Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69509.t1 | XP_024633882.1 | 100 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 2.10E-98 | 368.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69509.t1 | P51418 | 88.8 | 178 | 20 | 0 | 1 | 178 | 1 | 178 | 3.1e-90 | 332.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69509.t1 | I3SJF6 | 100.0 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 1.5e-98 | 368.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69509 | MS.gene073967 | PPI |
| MS.gene69509 | MS.gene45549 | PPI |
| MS.gene69509 | MS.gene038296 | PPI |
| MS.gene69509 | MS.gene019193 | PPI |
| MS.gene69509 | MS.gene48048 | PPI |
| MS.gene69509 | MS.gene08259 | PPI |
| MS.gene69509 | MS.gene038298 | PPI |
| MS.gene69509 | MS.gene09188 | PPI |
| MS.gene69509 | MS.gene057092 | PPI |
| MS.gene69509 | MS.gene08260 | PPI |
| MS.gene69509 | MS.gene78387 | PPI |
| MS.gene69509 | MS.gene017080 | PPI |
| MS.gene038296 | MS.gene69509 | PPI |
| MS.gene69509 | MS.gene29778 | PPI |
| MS.gene48046 | MS.gene69509 | PPI |
| MS.gene69509 | MS.gene48046 | PPI |
| MS.gene69509 | MS.gene09046 | PPI |
| MS.gene69509 | MS.gene31095 | PPI |
| MS.gene69509 | MS.gene09187 | PPI |
| MS.gene69509 | MS.gene052057 | PPI |
| MS.gene039012 | MS.gene69509 | PPI |
| MS.gene69509 | MS.gene22178 | PPI |
| MS.gene69509 | MS.gene77617 | PPI |
| MS.gene69509 | MS.gene023381 | PPI |
| MS.gene69509 | MS.gene017078 | PPI |
| MS.gene69509 | MS.gene92155 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69509.t1 | MTR_3g046320 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 1.83e-133 | 370 |
| MS.gene69509.t1 | MTR_3g046320 | 99.425 | 174 | 1 | 0 | 5 | 178 | 3 | 176 | 8.34e-130 | 361 |
| MS.gene69509.t1 | MTR_5g091135 | 94.382 | 178 | 10 | 0 | 1 | 178 | 1 | 178 | 3.26e-125 | 350 |
| MS.gene69509.t1 | MTR_5g091120 | 94.382 | 178 | 10 | 0 | 1 | 178 | 1 | 178 | 3.26e-125 | 350 |
| MS.gene69509.t1 | MTR_2g098000 | 94.382 | 178 | 10 | 0 | 1 | 178 | 1 | 178 | 3.26e-125 | 350 |
| MS.gene69509.t1 | MTR_2g019720 | 77.273 | 66 | 15 | 0 | 92 | 157 | 1 | 66 | 1.30e-32 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69509.t1 | AT2G34480 | 88.764 | 178 | 20 | 0 | 1 | 178 | 40 | 217 | 1.98e-120 | 339 |
| MS.gene69509.t1 | AT2G34480 | 88.764 | 178 | 20 | 0 | 1 | 178 | 1 | 178 | 2.73e-120 | 337 |
| MS.gene69509.t1 | AT1G29965 | 87.079 | 178 | 23 | 0 | 1 | 178 | 1 | 178 | 7.11e-118 | 331 |
| MS.gene69509.t1 | AT3G14600 | 87.079 | 178 | 23 | 0 | 1 | 178 | 1 | 178 | 8.30e-118 | 331 |
| MS.gene69509.t1 | AT1G29970 | 87.006 | 177 | 23 | 0 | 2 | 178 | 136 | 312 | 4.01e-114 | 327 |
Find 55 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTAAGAACTACGGAATT+TGG | 0.227031 | 3.1:+32494698 | MS.gene69509:CDS |
| TACCGCGACACTACACTAAA+TGG | 0.308319 | 3.1:+32494766 | MS.gene69509:CDS |
| TTGTCTTGAGCTTCCTGGTT+GGG | 0.316740 | 3.1:-32494960 | None:intergenic |
| GTATGTTGTCTTGAGCTTCC+TGG | 0.318485 | 3.1:-32494965 | None:intergenic |
| GATTTACCAGAACTTGGATT+TGG | 0.356285 | 3.1:-32492109 | None:intergenic |
| CTTTGGTGTTCAAGAAGATT+AGG | 0.360558 | 3.1:+32494935 | MS.gene69509:CDS |
| CTTGTACATGTTGTGATATC+CGG | 0.368635 | 3.1:-32494740 | None:intergenic |
| CTCGAAAATCAAGTTTCCTT+TGG | 0.369229 | 3.1:+32494918 | MS.gene69509:CDS |
| AATTCCGTAGTTCTTAATCT+TGG | 0.384261 | 3.1:-32494695 | None:intergenic |
| AACTTCATCCTATAGATCTT+AGG | 0.390754 | 3.1:-32492063 | None:intergenic |
| CGAAATACATACCTCATTGA+TGG | 0.398520 | 3.1:-32492457 | None:intergenic |
| ATGAACATCCTAAGATCTAT+AGG | 0.408451 | 3.1:+32492055 | MS.gene69509:CDS |
| TGTCTTGAGCTTCCTGGTTG+GGG | 0.409521 | 3.1:-32494959 | None:intergenic |
| TCCCAGCTAACCTTTGCAAA+AGG | 0.413105 | 3.1:+32494872 | MS.gene69509:CDS |
| GAGAATTACATAAACATGTT+GGG | 0.416940 | 3.1:-32495000 | None:intergenic |
| TTTCCAAATGGCCACCTTCA+AGG | 0.419208 | 3.1:+32491775 | None:intergenic |
| TTGTGGCAGTCTTGATGATC+TGG | 0.419281 | 3.1:-32494849 | None:intergenic |
| GGATTTGGCACGCACTTCAT+TGG | 0.425117 | 3.1:-32492094 | None:intergenic |
| CATTGATTGGATTACCTTGA+AGG | 0.425908 | 3.1:-32491789 | None:intergenic |
| CTTCGATACCAGAGCCGAAC+CGG | 0.434164 | 3.1:+32494721 | MS.gene69509:CDS |
| ATCGTTGATTTACCAGAACT+TGG | 0.434565 | 3.1:-32492115 | None:intergenic |
| CCGTAGTTCTTAATCTTGGT+TGG | 0.442883 | 3.1:-32494691 | None:intergenic |
| TGCGTGCCAAATCCAAGTTC+TGG | 0.459519 | 3.1:+32492103 | MS.gene69509:CDS |
| TGTGATATCCGGTTCGGCTC+TGG | 0.459842 | 3.1:-32494729 | None:intergenic |
| TGAATATATGTACAATGAAA+TGG | 0.482427 | 3.1:+32494795 | MS.gene69509:CDS |
| CCCAGCTAACCTTTGCAAAA+GGG | 0.486205 | 3.1:+32494873 | MS.gene69509:CDS |
| GATCTATAGGATGAAGTTGT+GGG | 0.489458 | 3.1:+32492068 | MS.gene69509:CDS |
| TGAGAATTACATAAACATGT+TGG | 0.490122 | 3.1:-32495001 | None:intergenic |
| CTCTCCCCACAACCTGGTAC+TGG | 0.493497 | 3.1:-32492014 | None:intergenic |
| ACATGTTGTGATATCCGGTT+CGG | 0.502939 | 3.1:-32494735 | None:intergenic |
| TGGCTTCACGTCATAGAGTC+AGG | 0.506716 | 3.1:+32494815 | MS.gene69509:CDS |
| TTTGGCACGCACTTCATTGG+TGG | 0.507151 | 3.1:-32492091 | None:intergenic |
| GTTGTCTTGAGCTTCCTGGT+TGG | 0.517024 | 3.1:-32494961 | None:intergenic |
| GTATCACCAGTACCAGGTTG+TGG | 0.520361 | 3.1:+32492008 | MS.gene69509:intron |
| AGATCTATAGGATGAAGTTG+TGG | 0.528188 | 3.1:+32492067 | MS.gene69509:CDS |
| TATCACCAGTACCAGGTTGT+GGG | 0.531253 | 3.1:+32492009 | MS.gene69509:CDS |
| AGAAGGTTAAGAAGAGCAAT+GGG | 0.531968 | 3.1:+32492424 | MS.gene69509:CDS |
| CGGATATCACAACATGTACA+AGG | 0.534565 | 3.1:+32494741 | MS.gene69509:CDS |
| GGTTAAGAAGAGCAATGGGC+AGG | 0.558529 | 3.1:+32492428 | MS.gene69509:CDS |
| GCAAAGGTTAGCTGGGATTG+TGG | 0.562321 | 3.1:-32494866 | None:intergenic |
| GGATGTTCATCCTTCTCAGT+AGG | 0.562491 | 3.1:-32492042 | None:intergenic |
| GTCTTGATGATCTGGATGCA+TGG | 0.564131 | 3.1:-32494841 | None:intergenic |
| GTCTTGAGCTTCCTGGTTGG+GGG | 0.565257 | 3.1:-32494958 | None:intergenic |
| TTTCGAGTTATGGAACTGCT+TGG | 0.570105 | 3.1:-32494902 | None:intergenic |
| AAGAAGGTTAAGAAGAGCAA+TGG | 0.574791 | 3.1:+32492423 | MS.gene69509:CDS |
| CCAACCAAGATTAAGAACTA+CGG | 0.592484 | 3.1:+32494691 | MS.gene69509:CDS |
| GAGAGCTCTTCCTACTGAGA+AGG | 0.593469 | 3.1:+32492032 | MS.gene69509:CDS |
| CTAATCTTCTTGAACACCAA+AGG | 0.593573 | 3.1:-32494934 | None:intergenic |
| GAAGAGCTCTCCCCACAACC+TGG | 0.596843 | 3.1:-32492020 | None:intergenic |
| GAATCAGTATCACCAGTACC+AGG | 0.603715 | 3.1:+32492002 | MS.gene69509:intron |
| TGATTGGATTACCTTGAAGG+TGG | 0.611460 | 3.1:-32491786 | None:intergenic |
| GAAGCTCAAGACAACATACA+AGG | 0.626427 | 3.1:+32494969 | MS.gene69509:CDS |
| ATCACCAGTACCAGGTTGTG+GGG | 0.633258 | 3.1:+32492010 | MS.gene69509:CDS |
| CACCATTTAGTGTAGTGTCG+CGG | 0.677168 | 3.1:-32494768 | None:intergenic |
| GCAGGTGCTTGCCATCAATG+AGG | 0.695053 | 3.1:+32492446 | MS.gene69509:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTATTTATAGAAAAC+CGG | + | chr3.1:32493588-32493607 | MS.gene69509:intron | 10.0% |
| !! | TATATTATTTATAGAAAACC+GGG | + | chr3.1:32493589-32493608 | MS.gene69509:intron | 15.0% |
| !!! | ACAAAGGTTATAAAATATTT+TGG | + | chr3.1:32494212-32494231 | MS.gene69509:intron | 15.0% |
| !!! | TTTTTGTTTTGAAATTTTGT+AGG | + | chr3.1:32492382-32492401 | MS.gene69509:intron | 15.0% |
| !! | AAATGATTGAAAACACATTT+AGG | + | chr3.1:32493456-32493475 | MS.gene69509:intron | 20.0% |
| !! | AAGCTATACATATATTGTTA+GGG | + | chr3.1:32494290-32494309 | MS.gene69509:intron | 20.0% |
| !! | AATTAAAACCTAAAACTTTG+AGG | - | chr3.1:32494619-32494638 | None:intergenic | 20.0% |
| !! | ACTCTATTAAAACATTTAGA+AGG | + | chr3.1:32492925-32492944 | MS.gene69509:intron | 20.0% |
| !! | ATTGAACTAACAAATTATGA+AGG | - | chr3.1:32491871-32491890 | None:intergenic | 20.0% |
| !! | CTCTATTAAAACATTTAGAA+GGG | + | chr3.1:32492926-32492945 | MS.gene69509:intron | 20.0% |
| !! | GAAAATAAAAGATGAGATTA+TGG | - | chr3.1:32491824-32491843 | None:intergenic | 20.0% |
| !! | GAAATACAACAATAAAACAA+AGG | - | chr3.1:32492543-32492562 | None:intergenic | 20.0% |
| !! | TAAGCTATACATATATTGTT+AGG | + | chr3.1:32494289-32494308 | MS.gene69509:intron | 20.0% |
| !! | TATAATTTACTCTTCTTACT+AGG | - | chr3.1:32492872-32492891 | None:intergenic | 20.0% |
| !! | TGAATATATGTACAATGAAA+TGG | + | chr3.1:32494795-32494814 | MS.gene69509:CDS | 20.0% |
| !! | TTAAACACAAACTTACAATA+GGG | + | chr3.1:32493820-32493839 | MS.gene69509:intron | 20.0% |
| !! | TTTAAACACAAACTTACAAT+AGG | + | chr3.1:32493819-32493838 | MS.gene69509:intron | 20.0% |
| !!! | ATAAACTTTTACCTTTGTAA+TGG | - | chr3.1:32493290-32493309 | None:intergenic | 20.0% |
| !!! | ATGAGAAAAATGAAATTTTC+TGG | + | chr3.1:32493564-32493583 | MS.gene69509:intron | 20.0% |
| !!! | ATGTTAAAAAGTAGTATTGA+TGG | + | chr3.1:32493308-32493327 | MS.gene69509:intron | 20.0% |
| !!! | ATTAAATATTTCTGATGCAT+TGG | + | chr3.1:32491929-32491948 | MS.gene69509:intron | 20.0% |
| !!! | GTTAAACTATACACATTTTA+CGG | + | chr3.1:32493989-32494008 | MS.gene69509:intron | 20.0% |
| !!! | TCATAATTTGTTAGTTCAAT+TGG | + | chr3.1:32491871-32491890 | MS.gene69509:intron | 20.0% |
| !!! | TGAAACATGAATTTTAACTA+AGG | + | chr3.1:32492805-32492824 | MS.gene69509:intron | 20.0% |
| !!! | TGAGAAAAATGAAATTTTCT+GGG | + | chr3.1:32493565-32493584 | MS.gene69509:intron | 20.0% |
| !!! | TGTTAAAAAGTAGTATTGAT+GGG | + | chr3.1:32493309-32493328 | MS.gene69509:intron | 20.0% |
| ! | AAAAAACAAAATGTGATCAC+CGG | - | chr3.1:32492367-32492386 | None:intergenic | 25.0% |
| ! | AACGTTAAAAAAAACGAGTT+GGG | - | chr3.1:32493665-32493684 | None:intergenic | 25.0% |
| ! | AATAAAAGATGAGATTATGG+TGG | - | chr3.1:32491821-32491840 | None:intergenic | 25.0% |
| ! | ACAAATTATGAAGGCAAAAA+TGG | - | chr3.1:32491862-32491881 | None:intergenic | 25.0% |
| ! | AGAAGAGTAAATTATAGCTA+AGG | + | chr3.1:32492876-32492895 | MS.gene69509:intron | 25.0% |
| ! | AGCTATACATATATTGTTAG+GGG | + | chr3.1:32494291-32494310 | MS.gene69509:intron | 25.0% |
| ! | AGGATTCGAAAAAAAAATAG+TGG | + | chr3.1:32492690-32492709 | MS.gene69509:intron | 25.0% |
| ! | AGGTAAATTATATCGAAGTT+TGG | + | chr3.1:32494320-32494339 | MS.gene69509:intron | 25.0% |
| ! | ATCAGTCATTTAACTAAGTA+CGG | - | chr3.1:32493874-32493893 | None:intergenic | 25.0% |
| ! | GAATCATGCATCAAAAATTT+AGG | + | chr3.1:32494384-32494403 | MS.gene69509:intron | 25.0% |
| ! | TTATGCAGTACTCTATTTAA+CGG | - | chr3.1:32494518-32494537 | None:intergenic | 25.0% |
| !! | ATTACAATTTTACCCTTAAG+TGG | - | chr3.1:32493079-32493098 | None:intergenic | 25.0% |
| !! | CAAAGTATTTGGTTGAAAAT+AGG | + | chr3.1:32493407-32493426 | MS.gene69509:intron | 25.0% |
| !! | GAAAACGAAAACAAAGTATT+TGG | + | chr3.1:32493396-32493415 | MS.gene69509:intron | 25.0% |
| !! | TTACAATTTTACCCTTAAGT+GGG | - | chr3.1:32493078-32493097 | None:intergenic | 25.0% |
| !!! | AACATGAATTTTAACTAAGG+TGG | + | chr3.1:32492808-32492827 | MS.gene69509:intron | 25.0% |
| !!! | CTGATATTTTCTTTGATTTG+AGG | - | chr3.1:32494451-32494470 | None:intergenic | 25.0% |
| !!! | TAAGATGGCAAAATTTTAAC+TGG | + | chr3.1:32492631-32492650 | MS.gene69509:intron | 25.0% |
| !!! | TCAATTTTTTATATGTCCTC+TGG | + | chr3.1:32494254-32494273 | MS.gene69509:intron | 25.0% |
| AACATCTGCAAAGAATAAGA+TGG | + | chr3.1:32492616-32492635 | MS.gene69509:intron | 30.0% | |
| AACTTCATCCTATAGATCTT+AGG | - | chr3.1:32492066-32492085 | None:intergenic | 30.0% | |
| AATTCCGTAGTTCTTAATCT+TGG | - | chr3.1:32494698-32494717 | None:intergenic | 30.0% | |
| ACAATAAAACAAAGGCTTCA+TGG | - | chr3.1:32492535-32492554 | None:intergenic | 30.0% | |
| AGAAAACGAAACAGAGTTAT+GGG | + | chr3.1:32493365-32493384 | MS.gene69509:intron | 30.0% | |
| AGATTAAGAACTACGGAATT+TGG | + | chr3.1:32494698-32494717 | MS.gene69509:CDS | 30.0% | |
| ATGAACATCCTAAGATCTAT+AGG | + | chr3.1:32492055-32492074 | MS.gene69509:CDS | 30.0% | |
| ATTGAAAACACATTTAGGTG+AGG | + | chr3.1:32493461-32493480 | MS.gene69509:intron | 30.0% | |
| ATTGGAGAGTTTGTAATGAT+GGG | + | chr3.1:32491947-32491966 | MS.gene69509:intron | 30.0% | |
| CAAGAATTGAGAAAAATGCA+TGG | - | chr3.1:32493928-32493947 | None:intergenic | 30.0% | |
| CTCTTGCATATTCAAGAATA+TGG | + | chr3.1:32494021-32494040 | MS.gene69509:intron | 30.0% | |
| GAACGTTAAAAAAAACGAGT+TGG | - | chr3.1:32493666-32493685 | None:intergenic | 30.0% | |
| GATTCTCTGTTGTTAAACAT+TGG | + | chr3.1:32493891-32493910 | MS.gene69509:intron | 30.0% | |
| GTTTCAATTGCAGAAAATAG+CGG | - | chr3.1:32492791-32492810 | None:intergenic | 30.0% | |
| TATATCGAAGTTTGGACATA+GGG | + | chr3.1:32494328-32494347 | MS.gene69509:intron | 30.0% | |
| TTAGTACCAAAGAATACAGA+AGG | - | chr3.1:32494066-32494085 | None:intergenic | 30.0% | |
| TTATATCGAAGTTTGGACAT+AGG | + | chr3.1:32494327-32494346 | MS.gene69509:intron | 30.0% | |
| TTCTGTATTCTTTGGTACTA+AGG | + | chr3.1:32494065-32494084 | MS.gene69509:intron | 30.0% | |
| TTGAAAACACATTTAGGTGA+GGG | + | chr3.1:32493462-32493481 | MS.gene69509:intron | 30.0% | |
| TTGTAAAATTGCAGCACAAT+AGG | + | chr3.1:32492738-32492757 | MS.gene69509:intron | 30.0% | |
| TTGTTCATGAAAAGAGTTAC+CGG | + | chr3.1:32492345-32492364 | MS.gene69509:intron | 30.0% | |
| ! | AAACTTACAATAGGGCATTA+TGG | + | chr3.1:32493828-32493847 | MS.gene69509:intron | 30.0% |
| ! | AAGAAACTGTAGAACTTGTT+AGG | + | chr3.1:32494174-32494193 | MS.gene69509:intron | 30.0% |
| ! | CATTTTTCTCAATTCTTGTC+AGG | + | chr3.1:32493930-32493949 | MS.gene69509:intron | 30.0% |
| ! | GCATTGTTCTTATTTGATGA+TGG | + | chr3.1:32492160-32492179 | MS.gene69509:intron | 30.0% |
| ! | GTAAGTTTGTGTTTAAAGCA+AGG | - | chr3.1:32493816-32493835 | None:intergenic | 30.0% |
| ! | TTTGTTCTGTTGATTAGTTC+TGG | + | chr3.1:32492193-32492212 | MS.gene69509:intron | 30.0% |
| !! | AGAAACTGTAGAACTTGTTA+GGG | + | chr3.1:32494175-32494194 | MS.gene69509:intron | 30.0% |
| !! | GTTCTAGTTTGTCTAATAGT+GGG | - | chr3.1:32494576-32494595 | None:intergenic | 30.0% |
| !! | GTTTCTATGGATTGTCTTTT+GGG | - | chr3.1:32493261-32493280 | None:intergenic | 30.0% |
| !! | TGTTTCTATGGATTGTCTTT+TGG | - | chr3.1:32493262-32493281 | None:intergenic | 30.0% |
| !! | TGTTTTTGCATTGCTCTTTT+TGG | + | chr3.1:32492271-32492290 | MS.gene69509:intron | 30.0% |
| !!! | ATCGTTTTTTCCATGTTTGT+TGG | - | chr3.1:32493711-32493730 | None:intergenic | 30.0% |
| !!! | CGTTTTTTTGTTTGTTGTTG+TGG | + | chr3.1:32491975-32491994 | MS.gene69509:intron | 30.0% |
| !!! | GAAACTTGATTTTCGAGTTA+TGG | - | chr3.1:32494915-32494934 | None:intergenic | 30.0% |
| !!! | GAATTTTAACTAAGGTGGTT+TGG | + | chr3.1:32492813-32492832 | MS.gene69509:intron | 30.0% |
| !!! | TTTTTTGAGAAAGCTGAAGA+AGG | + | chr3.1:32492407-32492426 | MS.gene69509:CDS | 30.0% |
| AAGAAGGTTAAGAAGAGCAA+TGG | + | chr3.1:32492423-32492442 | MS.gene69509:CDS | 35.0% | |
| AAGAGAACGAAACAGAGTAA+TGG | + | chr3.1:32493336-32493355 | MS.gene69509:intron | 35.0% | |
| ACAATAGGATTGCTATGTAG+TGG | + | chr3.1:32492753-32492772 | MS.gene69509:intron | 35.0% | |
| AGAAGGTTAAGAAGAGCAAT+GGG | + | chr3.1:32492424-32492443 | MS.gene69509:CDS | 35.0% | |
| AGAGAACGAAACAGAGTAAT+GGG | + | chr3.1:32493337-32493356 | MS.gene69509:intron | 35.0% | |
| AGATCTATAGGATGAAGTTG+TGG | + | chr3.1:32492067-32492086 | MS.gene69509:CDS | 35.0% | |
| ATTTAGGAGTAAGTCACTGT+TGG | + | chr3.1:32494400-32494419 | MS.gene69509:intron | 35.0% | |
| CATTGGAGAGTTTGTAATGA+TGG | + | chr3.1:32491946-32491965 | MS.gene69509:intron | 35.0% | |
| CCAACCAAGATTAAGAACTA+CGG | + | chr3.1:32494691-32494710 | MS.gene69509:CDS | 35.0% | |
| CGAAATACATACCTCATTGA+TGG | - | chr3.1:32492460-32492479 | None:intergenic | 35.0% | |
| CTAATCTTCTTGAACACCAA+AGG | - | chr3.1:32494937-32494956 | None:intergenic | 35.0% | |
| CTCGAAAATCAAGTTTCCTT+TGG | + | chr3.1:32494918-32494937 | MS.gene69509:CDS | 35.0% | |
| CTTGTACATGTTGTGATATC+CGG | - | chr3.1:32494743-32494762 | None:intergenic | 35.0% | |
| GAAACAACATGCCATTACAA+AGG | + | chr3.1:32493276-32493295 | MS.gene69509:intron | 35.0% | |
| GAGAAAACGAAACAGAGTTA+TGG | + | chr3.1:32493364-32493383 | MS.gene69509:intron | 35.0% | |
| GATCTATAGGATGAAGTTGT+GGG | + | chr3.1:32492068-32492087 | MS.gene69509:CDS | 35.0% | |
| GATTTACCAGAACTTGGATT+TGG | - | chr3.1:32492112-32492131 | None:intergenic | 35.0% | |
| GGAAAAAACGATTCAGAACA+AGG | + | chr3.1:32493719-32493738 | MS.gene69509:intron | 35.0% | |
| GTATTTGGTTGAAAATAGGC+CGG | + | chr3.1:32493411-32493430 | MS.gene69509:intron | 35.0% | |
| TATATTGTTAGGGGTCATTG+AGG | + | chr3.1:32494300-32494319 | MS.gene69509:intron | 35.0% | |
| TCCTAACATGCTGGTATTAA+GGG | - | chr3.1:32494123-32494142 | None:intergenic | 35.0% | |
| TTTAGGAGTAAGTCACTGTT+GGG | + | chr3.1:32494401-32494420 | MS.gene69509:intron | 35.0% | |
| ! | ATGGAACATGATAGAGTACT+TGG | + | chr3.1:32494040-32494059 | MS.gene69509:intron | 35.0% |
| ! | CATTGATTGGATTACCTTGA+AGG | - | chr3.1:32491792-32491811 | None:intergenic | 35.0% |
| ! | GATTGCTATGTAGTGGAATT+TGG | + | chr3.1:32492760-32492779 | MS.gene69509:intron | 35.0% |
| ! | TCTTTTACAAATGTTGCTCG+TGG | + | chr3.1:32492561-32492580 | MS.gene69509:intron | 35.0% |
| ! | TTCTTTGGTACTAAGGTATC+AGG | + | chr3.1:32494072-32494091 | MS.gene69509:intron | 35.0% |
| ! | TTGCATTGCTCTTTTTGGAT+GGG | + | chr3.1:32492276-32492295 | MS.gene69509:intron | 35.0% |
| ! | TTTGCATTGCTCTTTTTGGA+TGG | + | chr3.1:32492275-32492294 | MS.gene69509:intron | 35.0% |
| !! | ATCGTTGATTTACCAGAACT+TGG | - | chr3.1:32492118-32492137 | None:intergenic | 35.0% |
| !! | CGTTCTAGTTTGTCTAATAG+TGG | - | chr3.1:32494577-32494596 | None:intergenic | 35.0% |
| !! | CTTTGGTGTTCAAGAAGATT+AGG | + | chr3.1:32494935-32494954 | MS.gene69509:CDS | 35.0% |
| !! | GTAATGGCATGTTGTTTCTA+TGG | - | chr3.1:32493274-32493293 | None:intergenic | 35.0% |
| !! | TCCTGACTACATTGGTTTAA+AGG | - | chr3.1:32492972-32492991 | None:intergenic | 35.0% |
| !! | TTGTCTAATAGTGGGTATAG+CGG | - | chr3.1:32494568-32494587 | None:intergenic | 35.0% |
| !! | TTTAGCTCACTTCCTTTTTC+CGG | - | chr3.1:32493433-32493452 | None:intergenic | 35.0% |
| !!! | GATGGCAAAATTTTAACTGG+TGG | + | chr3.1:32492634-32492653 | MS.gene69509:intron | 35.0% |
| !!! | TTTTTTAACGTTCGTGCATC+AGG | + | chr3.1:32493673-32493692 | MS.gene69509:intron | 35.0% |
| !!! | TTTTTTCCATGTTTGTTGGC+AGG | - | chr3.1:32493707-32493726 | None:intergenic | 35.0% |
| AATGTTGCTCGTGGTAAGAT+AGG | + | chr3.1:32492570-32492589 | MS.gene69509:intron | 40.0% | |
| AATTCGCCGGAAAAGATTCA+TGG | + | chr3.1:32493507-32493526 | MS.gene69509:intron | 40.0% | |
| ACATGTTGTGATATCCGGTT+CGG | - | chr3.1:32494738-32494757 | None:intergenic | 40.0% | |
| ACGAAACAGAGTTATGGGTA+TGG | + | chr3.1:32493370-32493389 | MS.gene69509:intron | 40.0% | |
| CCGTAGTTCTTAATCTTGGT+TGG | - | chr3.1:32494694-32494713 | None:intergenic | 40.0% | |
| CCTAACATGCTGGTATTAAG+GGG | - | chr3.1:32494122-32494141 | None:intergenic | 40.0% | |
| CGGATATCACAACATGTACA+AGG | + | chr3.1:32494741-32494760 | MS.gene69509:CDS | 40.0% | |
| GAAGCTCAAGACAACATACA+AGG | + | chr3.1:32494969-32494988 | MS.gene69509:CDS | 40.0% | |
| GCCTTTAAACCAATGTAGTC+AGG | + | chr3.1:32492968-32492987 | MS.gene69509:intron | 40.0% | |
| GGAAAAAGGAAGTGAGCTAA+AGG | + | chr3.1:32493432-32493451 | MS.gene69509:intron | 40.0% | |
| GGAGGAAGATTTAAGCACAA+AGG | + | chr3.1:32494196-32494215 | MS.gene69509:intron | 40.0% | |
| GTCCTAACATGCTGGTATTA+AGG | - | chr3.1:32494124-32494143 | None:intergenic | 40.0% | |
| GTTCGTAAGAACCCACTTAA+GGG | + | chr3.1:32493064-32493083 | MS.gene69509:intron | 40.0% | |
| GTTGAAAATAGGCCGGAAAA+AGG | + | chr3.1:32493418-32493437 | MS.gene69509:intron | 40.0% | |
| TGATTGGATTACCTTGAAGG+TGG | - | chr3.1:32491789-32491808 | None:intergenic | 40.0% | |
| ! | ACTTGGCCTTCTGTATTCTT+TGG | + | chr3.1:32494057-32494076 | MS.gene69509:intron | 40.0% |
| ! | ATGGTGGAAGAGACATTGAT+TGG | - | chr3.1:32491805-32491824 | None:intergenic | 40.0% |
| ! | GTGTTTAAAGCAAGGTAGTC+AGG | - | chr3.1:32493808-32493827 | None:intergenic | 40.0% |
| ! | GTTCTCAGCCTCAAAGTTTT+AGG | + | chr3.1:32494608-32494627 | MS.gene69509:intron | 40.0% |
| !! | AACTGTAGAACTTGTTAGGG+AGG | + | chr3.1:32494178-32494197 | MS.gene69509:intron | 40.0% |
| !! | ACGAAACAGAGTAATGGGTA+TGG | + | chr3.1:32493342-32493361 | MS.gene69509:intron | 40.0% |
| !! | TAGCCCAAACCAATTTTGAC+AGG | + | chr3.1:32493639-32493658 | MS.gene69509:intron | 40.0% |
| !! | TTTCGAGTTATGGAACTGCT+TGG | - | chr3.1:32494905-32494924 | None:intergenic | 40.0% |
| AACGATTCAGAACAAGGTCG+AGG | + | chr3.1:32493725-32493744 | MS.gene69509:intron | 45.0% | |
| AAGACTTGTAGAAGGGCAGA+AGG | + | chr3.1:32492846-32492865 | MS.gene69509:intron | 45.0% | |
| ACCAGCATGTTAGGACTAGA+CGG | + | chr3.1:32494128-32494147 | MS.gene69509:intron | 45.0% | |
| ACCTAAACCTAGCACACGAA+CGG | - | chr3.1:32493536-32493555 | None:intergenic | 45.0% | |
| ACGTGGAGAAGACTTGTAGA+AGG | + | chr3.1:32492838-32492857 | MS.gene69509:intron | 45.0% | |
| AGTTCCTACGTAGGTTCGAT+TGG | + | chr3.1:32492995-32493014 | MS.gene69509:intron | 45.0% | |
| ATCGAAGTTTGGACATAGGG+TGG | + | chr3.1:32494331-32494350 | MS.gene69509:intron | 45.0% | |
| CACCATTTAGTGTAGTGTCG+CGG | - | chr3.1:32494771-32494790 | None:intergenic | 45.0% | |
| CCCAGCTAACCTTTGCAAAA+GGG | + | chr3.1:32494873-32494892 | MS.gene69509:CDS | 45.0% | |
| CCCCTTAATACCAGCATGTT+AGG | + | chr3.1:32494119-32494138 | MS.gene69509:intron | 45.0% | |
| CGTGGAGAAGACTTGTAGAA+GGG | + | chr3.1:32492839-32492858 | MS.gene69509:intron | 45.0% | |
| CTTAAACATCTGCGATCCAG+AGG | - | chr3.1:32494273-32494292 | None:intergenic | 45.0% | |
| CTTGTCAGGAATTCGACTCA+GGG | + | chr3.1:32493944-32493963 | MS.gene69509:intron | 45.0% | |
| GAACTCGTTCCTGACTACAT+TGG | - | chr3.1:32492980-32492999 | None:intergenic | 45.0% | |
| GAATCAGTATCACCAGTACC+AGG | + | chr3.1:32492002-32492021 | MS.gene69509:intron | 45.0% | |
| GCTACAACGCTATTGCATAG+AGG | + | chr3.1:32492670-32492689 | MS.gene69509:intron | 45.0% | |
| GGATGTTCATCCTTCTCAGT+AGG | - | chr3.1:32492045-32492064 | None:intergenic | 45.0% | |
| GGTAGGGTCAAAAGATAACC+CGG | - | chr3.1:32493610-32493629 | None:intergenic | 45.0% | |
| GGTTCGTAAGAACCCACTTA+AGG | + | chr3.1:32493063-32493082 | MS.gene69509:intron | 45.0% | |
| GTATGTTGTCTTGAGCTTCC+TGG | - | chr3.1:32494968-32494987 | None:intergenic | 45.0% | |
| GTGTAGGAACGTAAACACGA+GGG | + | chr3.1:32493021-32493040 | MS.gene69509:intron | 45.0% | |
| TAAACACGAGGGACGTAACA+CGG | + | chr3.1:32493032-32493051 | MS.gene69509:intron | 45.0% | |
| TACCGCGACACTACACTAAA+TGG | + | chr3.1:32494766-32494785 | MS.gene69509:CDS | 45.0% | |
| TATCACCAGTACCAGGTTGT+GGG | + | chr3.1:32492009-32492028 | MS.gene69509:CDS | 45.0% | |
| TCCCAGCTAACCTTTGCAAA+AGG | + | chr3.1:32494872-32494891 | MS.gene69509:CDS | 45.0% | |
| TCGTGTTTACGTTCCTACAC+CGG | - | chr3.1:32493021-32493040 | None:intergenic | 45.0% | |
| TCTTGTCAGGAATTCGACTC+AGG | + | chr3.1:32493943-32493962 | MS.gene69509:intron | 45.0% | |
| TGGGCCTGTCAAAATTGGTT+TGG | - | chr3.1:32493646-32493665 | None:intergenic | 45.0% | |
| TTGTCTTGAGCTTCCTGGTT+GGG | - | chr3.1:32494963-32494982 | None:intergenic | 45.0% | |
| ! | ACTAAGGTGGTTTGGATACG+TGG | + | chr3.1:32492821-32492840 | MS.gene69509:intron | 45.0% |
| ! | GGGCCTGTCAAAATTGGTTT+GGG | - | chr3.1:32493645-32493664 | None:intergenic | 45.0% |
| ! | GGTTATCTTTTGACCCTACC+CGG | + | chr3.1:32493610-32493629 | MS.gene69509:intron | 45.0% |
| ! | GTCTTGATGATCTGGATGCA+TGG | - | chr3.1:32494844-32494863 | None:intergenic | 45.0% |
| ! | TCCCTTTTGCAAAGGTTAGC+TGG | - | chr3.1:32494877-32494896 | None:intergenic | 45.0% |
| ! | TTGTGGCAGTCTTGATGATC+TGG | - | chr3.1:32494852-32494871 | None:intergenic | 45.0% |
| !! | AATAGTGGGTATAGCGGTAG+TGG | - | chr3.1:32494562-32494581 | None:intergenic | 45.0% |
| !! | CCCTTTTGCAAAGGTTAGCT+GGG | - | chr3.1:32494876-32494895 | None:intergenic | 45.0% |
| AACAAGGTCGAGGCACGATT+GGG | + | chr3.1:32493735-32493754 | MS.gene69509:intron | 50.0% | |
| ACCGTTCGTGTGCTAGGTTT+AGG | + | chr3.1:32493532-32493551 | MS.gene69509:intron | 50.0% | |
| ATCACCAGTACCAGGTTGTG+GGG | + | chr3.1:32492010-32492029 | MS.gene69509:CDS | 50.0% | |
| CTCGTTCCTGCCAACAAACA+TGG | + | chr3.1:32493698-32493717 | MS.gene69509:intron | 50.0% | |
| GAGAGCTCTTCCTACTGAGA+AGG | + | chr3.1:32492032-32492051 | MS.gene69509:CDS | 50.0% | |
| GGACGTAACACGGTTCGTAA+CGG | + | chr3.1:32493042-32493061 | MS.gene69509:intron | 50.0% | |
| GGATTTGGCACGCACTTCAT+TGG | - | chr3.1:32492097-32492116 | None:intergenic | 50.0% | |
| GGTGTAGGAACGTAAACACG+AGG | + | chr3.1:32493020-32493039 | MS.gene69509:intron | 50.0% | |
| GGTTAAGAAGAGCAATGGGC+AGG | + | chr3.1:32492428-32492447 | MS.gene69509:CDS | 50.0% | |
| GTATCACCAGTACCAGGTTG+TGG | + | chr3.1:32492008-32492027 | MS.gene69509:intron | 50.0% | |
| GTTGTCTTGAGCTTCCTGGT+TGG | - | chr3.1:32494964-32494983 | None:intergenic | 50.0% | |
| TAAACCTAGCACACGAACGG+TGG | - | chr3.1:32493533-32493552 | None:intergenic | 50.0% | |
| TCAGGAACGAGTTCCTACGT+AGG | + | chr3.1:32492986-32493005 | MS.gene69509:intron | 50.0% | |
| TCGTGTGCTAGGTTTAGGTG+AGG | + | chr3.1:32493537-32493556 | MS.gene69509:intron | 50.0% | |
| TGAGGGTAGAGAGAGAACGA+CGG | + | chr3.1:32493479-32493498 | MS.gene69509:intron | 50.0% | |
| TGCGTGCCAAATCCAAGTTC+TGG | + | chr3.1:32492103-32492122 | MS.gene69509:CDS | 50.0% | |
| TGGCTTCACGTCATAGAGTC+AGG | + | chr3.1:32494815-32494834 | MS.gene69509:CDS | 50.0% | |
| TGTCTTGAGCTTCCTGGTTG+GGG | - | chr3.1:32494962-32494981 | None:intergenic | 50.0% | |
| TTTGGCACGCACTTCATTGG+TGG | - | chr3.1:32492094-32492113 | None:intergenic | 50.0% | |
| ! | CGAGTTGGGCCTGTCAAAAT+TGG | - | chr3.1:32493651-32493670 | None:intergenic | 50.0% |
| ! | CGGTGGCCATGAATCTTTTC+CGG | - | chr3.1:32493516-32493535 | None:intergenic | 50.0% |
| ! | GCAAAGGTTAGCTGGGATTG+TGG | - | chr3.1:32494869-32494888 | None:intergenic | 50.0% |
| ! | TCTTTTGACCCTACCCGGTT+CGG | + | chr3.1:32493615-32493634 | MS.gene69509:intron | 50.0% |
| ! | TGGTGCTCTCCCTTTTGCAA+AGG | - | chr3.1:32494885-32494904 | None:intergenic | 50.0% |
| AACGACGGCGAGAAATTCGC+CGG | + | chr3.1:32493494-32493513 | MS.gene69509:intron | 55.0% | |
| AACGGACGATCCTACGTGCT+GGG | + | chr3.1:32493775-32493794 | MS.gene69509:intron | 55.0% | |
| AGAAGATTAGGCCCCCAACC+AGG | + | chr3.1:32494947-32494966 | MS.gene69509:CDS | 55.0% | |
| CCTACGTAGGTTCGATTGGC+CGG | + | chr3.1:32492999-32493018 | MS.gene69509:intron | 55.0% | |
| CTTCGATACCAGAGCCGAAC+CGG | + | chr3.1:32494721-32494740 | MS.gene69509:CDS | 55.0% | |
| GAACAAGGTCGAGGCACGAT+TGG | + | chr3.1:32493734-32493753 | MS.gene69509:intron | 55.0% | |
| GCAGGTGCTTGCCATCAATG+AGG | + | chr3.1:32492446-32492465 | MS.gene69509:CDS | 55.0% | |
| GCATGTTAGGACTAGACGGC+TGG | + | chr3.1:32494132-32494151 | MS.gene69509:intron | 55.0% | |
| GCCGTCTAGTCCTAACATGC+TGG | - | chr3.1:32494132-32494151 | None:intergenic | 55.0% | |
| GTCTTGAGCTTCCTGGTTGG+GGG | - | chr3.1:32494961-32494980 | None:intergenic | 55.0% | |
| ! | ATTGGGTGTGGGAAGCACGT+AGG | + | chr3.1:32493752-32493771 | MS.gene69509:intron | 55.0% |
| ! | CTTTTGACCCTACCCGGTTC+GGG | + | chr3.1:32493616-32493635 | MS.gene69509:intron | 55.0% |
| ! | GTGTGGGAAGCACGTAGGAA+CGG | + | chr3.1:32493757-32493776 | MS.gene69509:intron | 55.0% |
| ! | TAGGTTCGATTGGCCGGTGT+AGG | + | chr3.1:32493005-32493024 | MS.gene69509:intron | 55.0% |
| !! | TGTGATATCCGGTTCGGCTC+TGG | - | chr3.1:32494732-32494751 | None:intergenic | 55.0% |
| !! | TTGGTTTGGGCTACCCGAAC+CGG | - | chr3.1:32493632-32493651 | None:intergenic | 55.0% |
| ATGGCCACCGTTCGTGTGCT+AGG | + | chr3.1:32493526-32493545 | MS.gene69509:intron | 60.0% | |
| CCGGCCAATCGAACCTACGT+AGG | - | chr3.1:32493002-32493021 | None:intergenic | 60.0% | |
| CTCTCCCCACAACCTGGTAC+TGG | - | chr3.1:32492017-32492036 | None:intergenic | 60.0% | |
| GAACGGACGATCCTACGTGC+TGG | + | chr3.1:32493774-32493793 | MS.gene69509:intron | 60.0% | |
| GAAGAGCTCTCCCCACAACC+TGG | - | chr3.1:32492023-32492042 | None:intergenic | 60.0% | |
| GTCGAGGCACGATTGGGTGT+GGG | + | chr3.1:32493741-32493760 | MS.gene69509:intron | 60.0% | |
| ! | TGGTTTGGGCTACCCGAACC+GGG | - | chr3.1:32493631-32493650 | None:intergenic | 60.0% |
| AGGCACGAGTCCCAGCACGT+AGG | - | chr3.1:32493788-32493807 | None:intergenic | 65.0% | |
| GGTCGAGGCACGATTGGGTG+TGG | + | chr3.1:32493740-32493759 | MS.gene69509:intron | 65.0% | |
| TGGGCTACCCGAACCGGGTA+GGG | - | chr3.1:32493626-32493645 | None:intergenic | 65.0% | |
| TTGGGCTACCCGAACCGGGT+AGG | - | chr3.1:32493627-32493646 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 32491782 | 32495017 | 32491782 | ID=MS.gene69509 |
| chr3.1 | mRNA | 32491782 | 32495017 | 32491782 | ID=MS.gene69509.t1;Parent=MS.gene69509 |
| chr3.1 | exon | 32491782 | 32491796 | 32491782 | ID=MS.gene69509.t1.exon1;Parent=MS.gene69509.t1 |
| chr3.1 | CDS | 32491782 | 32491796 | 32491782 | ID=cds.MS.gene69509.t1;Parent=MS.gene69509.t1 |
| chr3.1 | exon | 32492009 | 32492124 | 32492009 | ID=MS.gene69509.t1.exon2;Parent=MS.gene69509.t1 |
| chr3.1 | CDS | 32492009 | 32492124 | 32492009 | ID=cds.MS.gene69509.t1;Parent=MS.gene69509.t1 |
| chr3.1 | exon | 32492404 | 32492467 | 32492404 | ID=MS.gene69509.t1.exon3;Parent=MS.gene69509.t1 |
| chr3.1 | CDS | 32492404 | 32492467 | 32492404 | ID=cds.MS.gene69509.t1;Parent=MS.gene69509.t1 |
| chr3.1 | exon | 32494676 | 32495017 | 32494676 | ID=MS.gene69509.t1.exon4;Parent=MS.gene69509.t1 |
| chr3.1 | CDS | 32494676 | 32495017 | 32494676 | ID=cds.MS.gene69509.t1;Parent=MS.gene69509.t1 |
| Gene Sequence |
| Protein sequence |
