Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052057.t1 | XP_003597433.2 | 100 | 180 | 0 | 0 | 34 | 213 | 15 | 194 | 8.60E-99 | 369.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052057.t1 | Q9ATF5 | 89.9 | 178 | 18 | 0 | 36 | 213 | 1 | 178 | 1.4e-89 | 330.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052057.t1 | A0A396JFT6 | 100.0 | 180 | 0 | 0 | 34 | 213 | 15 | 194 | 6.2e-99 | 369.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052057 | MS.gene066034 | 0.819145 | 1.35E-52 | -1.69E-46 |
| MS.gene052057 | MS.gene071364 | 0.802028 | 6.81E-49 | -1.69E-46 |
| MS.gene052057 | MS.gene073078 | 0.808148 | 3.57E-50 | -1.69E-46 |
| MS.gene052057 | MS.gene82038 | 0.812404 | 4.31E-51 | -1.69E-46 |
| MS.gene052057 | MS.gene82545 | 0.808235 | 3.42E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene48046 | MS.gene052057 | PPI |
| MS.gene038298 | MS.gene052057 | PPI |
| MS.gene052057 | MS.gene92155 | PPI |
| MS.gene09188 | MS.gene052057 | PPI |
| MS.gene052057 | MS.gene073967 | PPI |
| MS.gene09187 | MS.gene052057 | PPI |
| MS.gene08260 | MS.gene052057 | PPI |
| MS.gene052057 | MS.gene48048 | PPI |
| MS.gene052057 | MS.gene08259 | PPI |
| MS.gene039012 | MS.gene052057 | PPI |
| MS.gene052057 | MS.gene057092 | PPI |
| MS.gene052057 | MS.gene78387 | PPI |
| MS.gene023381 | MS.gene052057 | PPI |
| MS.gene019193 | MS.gene052057 | PPI |
| MS.gene22178 | MS.gene052057 | PPI |
| MS.gene77617 | MS.gene052057 | PPI |
| MS.gene017078 | MS.gene052057 | PPI |
| MS.gene017080 | MS.gene052057 | PPI |
| MS.gene29778 | MS.gene052057 | PPI |
| MS.gene057092 | MS.gene052057 | PPI |
| MS.gene69509 | MS.gene052057 | PPI |
| MS.gene052057 | MS.gene09046 | PPI |
| MS.gene052057 | MS.gene31095 | PPI |
| MS.gene45549 | MS.gene052057 | PPI |
| MS.gene052057 | MS.gene22178 | PPI |
| MS.gene038296 | MS.gene052057 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052057.t1 | MTR_5g091135 | 100.000 | 178 | 0 | 0 | 36 | 213 | 1 | 178 | 9.67e-133 | 370 |
| MS.gene052057.t1 | MTR_5g091120 | 100.000 | 178 | 0 | 0 | 36 | 213 | 1 | 178 | 9.67e-133 | 370 |
| MS.gene052057.t1 | MTR_2g098000 | 100.000 | 178 | 0 | 0 | 36 | 213 | 1 | 178 | 9.67e-133 | 370 |
| MS.gene052057.t1 | MTR_3g046320 | 94.382 | 178 | 10 | 0 | 36 | 213 | 1 | 178 | 7.74e-125 | 350 |
| MS.gene052057.t1 | MTR_3g046320 | 95.402 | 174 | 8 | 0 | 40 | 213 | 3 | 176 | 9.29e-124 | 347 |
| MS.gene052057.t1 | MTR_2g019720 | 62.353 | 85 | 32 | 0 | 127 | 211 | 1 | 85 | 2.18e-33 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052057.t1 | AT2G34480 | 82.828 | 198 | 33 | 1 | 17 | 213 | 20 | 217 | 9.58e-121 | 341 |
| MS.gene052057.t1 | AT2G34480 | 90.230 | 174 | 17 | 0 | 40 | 213 | 5 | 178 | 1.01e-118 | 335 |
| MS.gene052057.t1 | AT1G29965 | 87.079 | 178 | 23 | 0 | 36 | 213 | 1 | 178 | 4.35e-117 | 331 |
| MS.gene052057.t1 | AT3G14600 | 87.079 | 178 | 23 | 0 | 36 | 213 | 1 | 178 | 1.27e-116 | 329 |
| MS.gene052057.t1 | AT1G29970 | 89.017 | 173 | 19 | 0 | 41 | 213 | 140 | 312 | 2.63e-114 | 328 |
Find 53 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCAATGGGAACTTGATTT+TGG | 0.119520 | 2.2:+4648654 | None:intergenic |
| AGATTAAGAACTATGGAATT+TGG | 0.243479 | 2.2:-4648876 | MS.gene052057:CDS |
| GAAAAGTAATGGACAAGTTT+TGG | 0.246012 | 2.2:-4649608 | MS.gene052057:CDS |
| GTTGGGCTTCTTAGCTTTGT+AGG | 0.272211 | 2.2:+4648591 | None:intergenic |
| ACTACAATCAGCTCGGAAAA+TGG | 0.314844 | 2.2:-4649970 | MS.gene052057:CDS |
| ACGAAATGGCATCTCGTCAT+AGG | 0.320455 | 2.2:-4648765 | MS.gene052057:CDS |
| AGATTTATCGCATGAAGCTT+TGG | 0.333905 | 2.2:-4649787 | MS.gene052057:CDS |
| AAAAGGTCCACCATTGATTA+GGG | 0.340282 | 2.2:-4650048 | MS.gene052057:CDS |
| GATTTATCGCATGAAGCTTT+GGG | 0.349457 | 2.2:-4649786 | MS.gene052057:CDS |
| CCTACCAAGATTAAGAACTA+TGG | 0.366976 | 2.2:-4648883 | MS.gene052057:CDS |
| AACTTACCAGAACTTGGATT+TGG | 0.367421 | 2.2:+4649745 | None:intergenic |
| TCGAACTCAATGGGTCAAAA+AGG | 0.370780 | 2.2:-4650065 | None:intergenic |
| TCCCAGCTAATCTGTGCAAA+AGG | 0.391912 | 2.2:-4648702 | MS.gene052057:CDS |
| AATTCCATAGTTCTTAATCT+TGG | 0.403701 | 2.2:+4648879 | None:intergenic |
| ATTCACTGAATCACATAAAC+AGG | 0.404006 | 2.2:+4648569 | None:intergenic |
| CATTGGTGTACAAGAAGATT+AGG | 0.404454 | 2.2:-4648639 | MS.gene052057:CDS |
| AGCTTCATGCGATAAATCTT+AGG | 0.407205 | 2.2:+4649791 | None:intergenic |
| TGGTGGCGGTCTTAATGATC+TGG | 0.424945 | 2.2:+4648725 | None:intergenic |
| TACCGTGATACTACTCTAAA+CGG | 0.448863 | 2.2:-4648808 | MS.gene052057:CDS |
| ATAAGGAACTTACCAGAACT+TGG | 0.449276 | 2.2:+4649739 | None:intergenic |
| TTCGTGCCAAATCCAAGTTC+TGG | 0.468779 | 2.2:-4649751 | MS.gene052057:intron |
| TAAAATAAAACCCTAATCAA+TGG | 0.482054 | 2.2:+4650038 | None:intergenic |
| CTGAATCACATAAACAGGTT+GGG | 0.486125 | 2.2:+4648574 | None:intergenic |
| CTCTTCCGACAACCTGGTAC+TGG | 0.487827 | 2.2:+4649840 | None:intergenic |
| TTTCTTGAGGAAGTTGAAGA+AGG | 0.490067 | 2.2:-4649635 | MS.gene052057:CDS |
| TAATCTTCTTGTACACCAAT+GGG | 0.498182 | 2.2:+4648641 | None:intergenic |
| TGGCATCTCGTCATAGGGTC+AGG | 0.499078 | 2.2:-4648759 | MS.gene052057:CDS |
| TTGCGTTATCAGAGTCGTAC+TGG | 0.505845 | 2.2:-4648853 | MS.gene052057:CDS |
| AGAAGATTAGGCCTCCTACT+AGG | 0.511127 | 2.2:-4648627 | MS.gene052057:CDS |
| TCCACAGTTTCACCAGTACC+AGG | 0.511898 | 2.2:-4649852 | MS.gene052057:intron |
| AAGAAGGTTAAGAAAAGTAA+TGG | 0.518066 | 2.2:-4649619 | MS.gene052057:CDS |
| TTTGCACAGATTAGCTGGGA+TGG | 0.520373 | 2.2:+4648705 | None:intergenic |
| GGAGACAATGTACAACGAAA+TGG | 0.522780 | 2.2:-4648779 | MS.gene052057:CDS |
| CCCAGCTAATCTGTGCAAAA+GGG | 0.524734 | 2.2:-4648701 | MS.gene052057:CDS |
| AAGAGCACTTCCCACCGAAA+AGG | 0.530461 | 2.2:-4649822 | MS.gene052057:CDS |
| TTTCACCAGTACCAGGTTGT+CGG | 0.538716 | 2.2:-4649845 | MS.gene052057:CDS |
| CTAATCTTCTTGTACACCAA+TGG | 0.540589 | 2.2:+4648640 | None:intergenic |
| CGAAATGGCATCTCGTCATA+GGG | 0.541059 | 2.2:-4648764 | MS.gene052057:CDS |
| CCATAGTTCTTAATCTTGGT+AGG | 0.548600 | 2.2:+4648883 | None:intergenic |
| TCGGAAAATGGTTAACGCTA+AGG | 0.552440 | 2.2:-4649958 | MS.gene052057:intron |
| GGATTTGGCACGAACCTCGT+TGG | 0.555937 | 2.2:+4649760 | None:intergenic |
| CAGATTAGCTGGGATGGTGG+CGG | 0.559030 | 2.2:+4648711 | None:intergenic |
| TTCCAAAATCAAGTTCCCAT+TGG | 0.559786 | 2.2:-4648656 | MS.gene052057:CDS |
| ACTGAATCACATAAACAGGT+TGG | 0.563649 | 2.2:+4648573 | None:intergenic |
| GTCTTAATGATCTGGATGCA+AGG | 0.582689 | 2.2:+4648733 | None:intergenic |
| GAAGTGCTCTTCCGACAACC+TGG | 0.588662 | 2.2:+4649834 | None:intergenic |
| GCACAGATTAGCTGGGATGG+TGG | 0.592241 | 2.2:+4648708 | None:intergenic |
| AATAAAACCCTAATCAATGG+TGG | 0.601555 | 2.2:+4650041 | None:intergenic |
| TGGTTATCACAATATGTACA+AGG | 0.613559 | 2.2:-4648833 | MS.gene052057:CDS |
| ACAGAAAACTACAATCAGCT+CGG | 0.620129 | 2.2:-4649977 | MS.gene052057:CDS |
| TACTACTCTAAACGGTGCTG+TGG | 0.650976 | 2.2:-4648800 | MS.gene052057:CDS |
| CACCGTTTAGAGTAGTATCA+CGG | 0.660256 | 2.2:+4648806 | None:intergenic |
| GAAGCTTTGGGCAACCAACG+AGG | 0.727612 | 2.2:-4649774 | MS.gene052057:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAATAAATAAATAAATA+AGG | + | chr2.2:4648916-4648935 | None:intergenic | 0.0% |
| !!! | TTAATAATGTTAATTTTTGT+AGG | - | chr2.2:4648975-4648994 | MS.gene052057:intron | 10.0% |
| !! | AAAGATCTGCAATAAAAAAA+AGG | + | chr2.2:4649723-4649742 | None:intergenic | 20.0% |
| !! | AAATCATTGAAATGTCATAT+AGG | + | chr2.2:4649207-4649226 | None:intergenic | 20.0% |
| !! | ATTCAAATTTGATACAACTT+AGG | - | chr2.2:4649090-4649109 | MS.gene052057:intron | 20.0% |
| !! | TAAAATAAAACCCTAATCAA+TGG | + | chr2.2:4648600-4648619 | None:intergenic | 20.0% |
| !! | TGTATCAAATTTGAATTAAG+AGG | + | chr2.2:4649086-4649105 | None:intergenic | 20.0% |
| !! | TTGTTGTAACATATCTATTA+AGG | - | chr2.2:4649432-4649451 | MS.gene052057:intron | 20.0% |
| ! | AAGAAGGTTAAGAAAAGTAA+TGG | - | chr2.2:4649016-4649035 | MS.gene052057:intron | 25.0% |
| ! | AATAGATATGTTACAACAAC+AGG | + | chr2.2:4649431-4649450 | None:intergenic | 25.0% |
| ! | AATTCCATAGTTCTTAATCT+TGG | + | chr2.2:4649759-4649778 | None:intergenic | 25.0% |
| ! | AGATTAAGAACTATGGAATT+TGG | - | chr2.2:4649759-4649778 | MS.gene052057:CDS | 25.0% |
| ! | CAATTATTCTAGGCAAAATA+AGG | - | chr2.2:4649594-4649613 | MS.gene052057:intron | 25.0% |
| ! | CGTATTGTTTCAATTATTCT+AGG | - | chr2.2:4649584-4649603 | MS.gene052057:intron | 25.0% |
| ! | TTATGTCAAAATCCAAACAT+AGG | - | chr2.2:4649402-4649421 | MS.gene052057:intron | 25.0% |
| !! | ATTTTTGTAGGTATTTCTTG+AGG | - | chr2.2:4648987-4649006 | MS.gene052057:intron | 25.0% |
| AATAAAACCCTAATCAATGG+TGG | + | chr2.2:4648597-4648616 | None:intergenic | 30.0% | |
| AATTGTGGTGAAAGAATATG+TGG | - | chr2.2:4649619-4649638 | MS.gene052057:CDS | 30.0% | |
| ACAAGTCATAAACTGTATCA+TGG | + | chr2.2:4649251-4649270 | None:intergenic | 30.0% | |
| ATAACAACTAAAGCAAACAC+AGG | + | chr2.2:4649656-4649675 | None:intergenic | 30.0% | |
| TAACAACTAAAGCAAACACA+GGG | + | chr2.2:4649655-4649674 | None:intergenic | 30.0% | |
| TAATCTTCTTGTACACCAAT+GGG | + | chr2.2:4649997-4650016 | None:intergenic | 30.0% | |
| TCATAAACTGTATCATGGAA+TGG | + | chr2.2:4649246-4649265 | None:intergenic | 30.0% | |
| TGGTTATCACAATATGTACA+AGG | - | chr2.2:4649802-4649821 | MS.gene052057:CDS | 30.0% | |
| !! | TGACTTGTTTGAAAGTACTT+TGG | - | chr2.2:4649263-4649282 | MS.gene052057:intron | 30.0% |
| !! | TGTTTGAAAGTACTTTGGTT+GGG | - | chr2.2:4649268-4649287 | MS.gene052057:intron | 30.0% |
| !! | TTGTTTGAAAGTACTTTGGT+TGG | - | chr2.2:4649267-4649286 | MS.gene052057:intron | 30.0% |
| !!! | GAAAAGTAATGGACAAGTTT+TGG | - | chr2.2:4649027-4649046 | MS.gene052057:intron | 30.0% |
| !!! | TAGCTTTGTAGGTTGTTTTT+AGG | + | chr2.2:4650036-4650055 | None:intergenic | 30.0% |
| AACAACAGGTTACCTATGTT+TGG | + | chr2.2:4649417-4649436 | None:intergenic | 35.0% | |
| AACTTACCAGAACTTGGATT+TGG | + | chr2.2:4648893-4648912 | None:intergenic | 35.0% | |
| ACAGAAAACTACAATCAGCT+CGG | - | chr2.2:4648658-4648677 | MS.gene052057:CDS | 35.0% | |
| ACAGCTTACACTCAAATGTT+TGG | + | chr2.2:4649366-4649385 | None:intergenic | 35.0% | |
| AGATTTATCGCATGAAGCTT+TGG | - | chr2.2:4648848-4648867 | MS.gene052057:CDS | 35.0% | |
| AGCTTCATGCGATAAATCTT+AGG | + | chr2.2:4648847-4648866 | None:intergenic | 35.0% | |
| AGGCAAAATAAGGCTAATTG+TGG | - | chr2.2:4649604-4649623 | MS.gene052057:CDS | 35.0% | |
| ATAAGGAACTTACCAGAACT+TGG | + | chr2.2:4648899-4648918 | None:intergenic | 35.0% | |
| CATTGGTGTACAAGAAGATT+AGG | - | chr2.2:4649996-4650015 | MS.gene052057:CDS | 35.0% | |
| CCATAGTTCTTAATCTTGGT+AGG | + | chr2.2:4649755-4649774 | None:intergenic | 35.0% | |
| CCTACCAAGATTAAGAACTA+TGG | - | chr2.2:4649752-4649771 | MS.gene052057:CDS | 35.0% | |
| CTAATCTTCTTGTACACCAA+TGG | + | chr2.2:4649998-4650017 | None:intergenic | 35.0% | |
| GATTTATCGCATGAAGCTTT+GGG | - | chr2.2:4648849-4648868 | MS.gene052057:CDS | 35.0% | |
| TACCGTGATACTACTCTAAA+CGG | - | chr2.2:4649827-4649846 | MS.gene052057:CDS | 35.0% | |
| TCAGCTATGAAATTAGTCAC+TGG | + | chr2.2:4649534-4649553 | None:intergenic | 35.0% | |
| TCTGTGTGTGAATCTTAACA+CGG | - | chr2.2:4648745-4648764 | MS.gene052057:CDS | 35.0% | |
| TGTCTTGAGTATTTCCTAGA+GGG | - | chr2.2:4649495-4649514 | MS.gene052057:intron | 35.0% | |
| TTCCAAAATCAAGTTCCCAT+TGG | - | chr2.2:4649979-4649998 | MS.gene052057:CDS | 35.0% | |
| TTTCTTGAGGAAGTTGAAGA+AGG | - | chr2.2:4649000-4649019 | MS.gene052057:intron | 35.0% | |
| ! | AAAAAGGTCCACCATTGATT+AGG | - | chr2.2:4648586-4648605 | MS.gene052057:CDS | 35.0% |
| ! | AAAAGGTCCACCATTGATTA+GGG | - | chr2.2:4648587-4648606 | MS.gene052057:CDS | 35.0% |
| ! | AAAGTACTTTGGTTGGGAAA+GGG | - | chr2.2:4649274-4649293 | MS.gene052057:intron | 35.0% |
| ! | CTTAGGATGTTCATCCTTTT+CGG | + | chr2.2:4648830-4648849 | None:intergenic | 35.0% |
| ! | TTTTTGGACATAGGGGTTTA+TGG | - | chr2.2:4649695-4649714 | MS.gene052057:intron | 35.0% |
| !!! | ACAAGTTTTGGCTATCAATG+AGG | - | chr2.2:4649039-4649058 | MS.gene052057:intron | 35.0% |
| !!! | GGAACTTGATTTTGGAATTG+TGG | + | chr2.2:4649976-4649995 | None:intergenic | 35.0% |
| !!! | GTTCTGTTTTGATTAGTGCT+GGG | - | chr2.2:4649300-4649319 | MS.gene052057:intron | 35.0% |
| !!! | TGTTCTGTTTTGATTAGTGC+TGG | - | chr2.2:4649299-4649318 | MS.gene052057:intron | 35.0% |
| AATACCGAACAAGTGCTTCT+AGG | + | chr2.2:4649163-4649182 | None:intergenic | 40.0% | |
| ACTACAATCAGCTCGGAAAA+TGG | - | chr2.2:4648665-4648684 | MS.gene052057:CDS | 40.0% | |
| ATACCGAACAAGTGCTTCTA+GGG | + | chr2.2:4649162-4649181 | None:intergenic | 40.0% | |
| CTGTCTTGAGTATTTCCTAG+AGG | - | chr2.2:4649494-4649513 | MS.gene052057:intron | 40.0% | |
| GATACAACTTAGGCTGTGTT+TGG | - | chr2.2:4649100-4649119 | MS.gene052057:intron | 40.0% | |
| GGAGACAATGTACAACGAAA+TGG | - | chr2.2:4649856-4649875 | MS.gene052057:intron | 40.0% | |
| GGTGAAAGAATATGTGGAGT+AGG | - | chr2.2:4649625-4649644 | MS.gene052057:CDS | 40.0% | |
| GTCTTAATGATCTGGATGCA+AGG | + | chr2.2:4649905-4649924 | None:intergenic | 40.0% | |
| GTTTCATGCTAAAACCCTCT+AGG | + | chr2.2:4649512-4649531 | None:intergenic | 40.0% | |
| TCCAAAAAGACTGCAGTTGA+AGG | + | chr2.2:4649683-4649702 | None:intergenic | 40.0% | |
| TCGGAAAATGGTTAACGCTA+AGG | - | chr2.2:4648677-4648696 | MS.gene052057:CDS | 40.0% | |
| ! | ACCTTCAACTGCAGTCTTTT+TGG | - | chr2.2:4649679-4649698 | MS.gene052057:intron | 40.0% |
| ! | ACTGCAGTCTTTTTGGACAT+AGG | - | chr2.2:4649686-4649705 | MS.gene052057:intron | 40.0% |
| ! | CACCAATGGGAACTTGATTT+TGG | + | chr2.2:4649984-4650003 | None:intergenic | 40.0% |
| ! | CACCGTTTAGAGTAGTATCA+CGG | + | chr2.2:4649832-4649851 | None:intergenic | 40.0% |
| ! | CTCTAGGAAATACTCAAGAC+AGG | + | chr2.2:4649496-4649515 | None:intergenic | 40.0% |
| ! | CTGCAGTCTTTTTGGACATA+GGG | - | chr2.2:4649687-4649706 | MS.gene052057:intron | 40.0% |
| ! | TGCAGTCTTTTTGGACATAG+GGG | - | chr2.2:4649688-4649707 | MS.gene052057:intron | 40.0% |
| !! | GAAAGTACTTTGGTTGGGAA+AGG | - | chr2.2:4649273-4649292 | MS.gene052057:intron | 40.0% |
| !!! | GTTGTTTTTAGGCTCCTAGT+AGG | + | chr2.2:4650025-4650044 | None:intergenic | 40.0% |
| ACGAAATGGCATCTCGTCAT+AGG | - | chr2.2:4649870-4649889 | MS.gene052057:intron | 45.0% | |
| AGAAGATTAGGCCTCCTACT+AGG | - | chr2.2:4650008-4650027 | MS.gene052057:CDS | 45.0% | |
| CCCAGCTAATCTGTGCAAAA+GGG | - | chr2.2:4649934-4649953 | MS.gene052057:intron | 45.0% | |
| CGAAATGGCATCTCGTCATA+GGG | - | chr2.2:4649871-4649890 | MS.gene052057:intron | 45.0% | |
| GGCAAACAGTGACAGTTTGA+AGG | + | chr2.2:4649475-4649494 | None:intergenic | 45.0% | |
| TACCGAACAAGTGCTTCTAG+GGG | + | chr2.2:4649161-4649180 | None:intergenic | 45.0% | |
| TCCCAGCTAATCTGTGCAAA+AGG | - | chr2.2:4649933-4649952 | MS.gene052057:intron | 45.0% | |
| TTCGTGCCAAATCCAAGTTC+TGG | - | chr2.2:4648884-4648903 | MS.gene052057:CDS | 45.0% | |
| TTGCGTTATCAGAGTCGTAC+TGG | - | chr2.2:4649782-4649801 | MS.gene052057:CDS | 45.0% | |
| TTTCACCAGTACCAGGTTGT+CGG | - | chr2.2:4648790-4648809 | MS.gene052057:CDS | 45.0% | |
| ! | AGGATGTTCATCCTTTTCGG+TGG | + | chr2.2:4648827-4648846 | None:intergenic | 45.0% |
| ! | GGATGTTCATCCTTTTCGGT+GGG | + | chr2.2:4648826-4648845 | None:intergenic | 45.0% |
| ! | TACTACTCTAAACGGTGCTG+TGG | - | chr2.2:4649835-4649854 | MS.gene052057:CDS | 45.0% |
| ! | TCCCTTTTGCACAGATTAGC+TGG | + | chr2.2:4649938-4649957 | None:intergenic | 45.0% |
| ! | TTTGCACAGATTAGCTGGGA+TGG | + | chr2.2:4649933-4649952 | None:intergenic | 45.0% |
| !! | CCCTTTTGCACAGATTAGCT+GGG | + | chr2.2:4649937-4649956 | None:intergenic | 45.0% |
| !! | GTTGGGCTTCTTAGCTTTGT+AGG | + | chr2.2:4650047-4650066 | None:intergenic | 45.0% |
| !! | GTTTTTAGGCTCCTAGTAGG+AGG | + | chr2.2:4650022-4650041 | None:intergenic | 45.0% |
| TCCACAGTTTCACCAGTACC+AGG | - | chr2.2:4648783-4648802 | MS.gene052057:CDS | 50.0% | |
| !! | AAGAGCACTTCCCACCGAAA+AGG | - | chr2.2:4648813-4648832 | MS.gene052057:CDS | 50.0% |
| !! | ACCTGGTACTGGTGAAACTG+TGG | + | chr2.2:4648787-4648806 | None:intergenic | 50.0% |
| !! | GACCCCTAGAAGCACTTGTT+CGG | - | chr2.2:4649156-4649175 | MS.gene052057:intron | 50.0% |
| !! | TGGTGGCGGTCTTAATGATC+TGG | + | chr2.2:4649913-4649932 | None:intergenic | 50.0% |
| CTCTTCCGACAACCTGGTAC+TGG | + | chr2.2:4648798-4648817 | None:intergenic | 55.0% | |
| GGATTTGGCACGAACCTCGT+TGG | + | chr2.2:4648878-4648897 | None:intergenic | 55.0% | |
| TGGCATCTCGTCATAGGGTC+AGG | - | chr2.2:4649876-4649895 | MS.gene052057:intron | 55.0% | |
| ! | CAGATTAGCTGGGATGGTGG+CGG | + | chr2.2:4649927-4649946 | None:intergenic | 55.0% |
| ! | GAAGTGCTCTTCCGACAACC+TGG | + | chr2.2:4648804-4648823 | None:intergenic | 55.0% |
| ! | GCACAGATTAGCTGGGATGG+TGG | + | chr2.2:4649930-4649949 | None:intergenic | 55.0% |
| !! | GAAGCTTTGGGCAACCAACG+AGG | - | chr2.2:4648861-4648880 | MS.gene052057:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 4648579 | 4650078 | 4648579 | ID=MS.gene052057 |
| chr2.2 | mRNA | 4648579 | 4650078 | 4648579 | ID=MS.gene052057.t1;Parent=MS.gene052057 |
| chr2.2 | exon | 4649959 | 4650078 | 4649959 | ID=MS.gene052057.t1.exon1;Parent=MS.gene052057.t1 |
| chr2.2 | CDS | 4649959 | 4650078 | 4649959 | ID=cds.MS.gene052057.t1;Parent=MS.gene052057.t1 |
| chr2.2 | exon | 4649752 | 4649867 | 4649752 | ID=MS.gene052057.t1.exon2;Parent=MS.gene052057.t1 |
| chr2.2 | CDS | 4649752 | 4649867 | 4649752 | ID=cds.MS.gene052057.t1;Parent=MS.gene052057.t1 |
| chr2.2 | exon | 4649597 | 4649660 | 4649597 | ID=MS.gene052057.t1.exon3;Parent=MS.gene052057.t1 |
| chr2.2 | CDS | 4649597 | 4649660 | 4649597 | ID=cds.MS.gene052057.t1;Parent=MS.gene052057.t1 |
| chr2.2 | exon | 4648579 | 4648920 | 4648579 | ID=MS.gene052057.t1.exon4;Parent=MS.gene052057.t1 |
| chr2.2 | CDS | 4648579 | 4648920 | 4648579 | ID=cds.MS.gene052057.t1;Parent=MS.gene052057.t1 |
| Gene Sequence |
| Protein sequence |