Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78387.t1 | XP_003597433.2 | 100 | 180 | 0 | 0 | 34 | 213 | 15 | 194 | 8.60E-99 | 369.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78387.t1 | Q9ATF5 | 89.9 | 178 | 18 | 0 | 36 | 213 | 1 | 178 | 1.4e-89 | 330.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78387.t1 | A0A396JFT6 | 100.0 | 180 | 0 | 0 | 34 | 213 | 15 | 194 | 6.2e-99 | 369.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene057094 | MS.gene78387 | 0.809899 | 1.51E-50 | -1.69E-46 |
MS.gene06001 | MS.gene78387 | 0.801607 | 8.32E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene023381 | MS.gene78387 | PPI |
MS.gene78387 | MS.gene09046 | PPI |
MS.gene78387 | MS.gene31095 | PPI |
MS.gene019193 | MS.gene78387 | PPI |
MS.gene22178 | MS.gene78387 | PPI |
MS.gene77617 | MS.gene78387 | PPI |
MS.gene08259 | MS.gene78387 | PPI |
MS.gene017078 | MS.gene78387 | PPI |
MS.gene017080 | MS.gene78387 | PPI |
MS.gene057092 | MS.gene78387 | PPI |
MS.gene78387 | MS.gene92155 | PPI |
MS.gene69509 | MS.gene78387 | PPI |
MS.gene31095 | MS.gene78387 | PPI |
MS.gene78387 | MS.gene073967 | PPI |
MS.gene45549 | MS.gene78387 | PPI |
MS.gene052057 | MS.gene78387 | PPI |
MS.gene78387 | MS.gene48048 | PPI |
MS.gene29778 | MS.gene78387 | PPI |
MS.gene038296 | MS.gene78387 | PPI |
MS.gene038298 | MS.gene78387 | PPI |
MS.gene09188 | MS.gene78387 | PPI |
MS.gene09187 | MS.gene78387 | PPI |
MS.gene08260 | MS.gene78387 | PPI |
MS.gene48046 | MS.gene78387 | PPI |
MS.gene48048 | MS.gene78387 | PPI |
MS.gene039012 | MS.gene78387 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78387.t1 | MTR_5g091135 | 100.000 | 178 | 0 | 0 | 36 | 213 | 1 | 178 | 9.67e-133 | 370 |
MS.gene78387.t1 | MTR_5g091120 | 100.000 | 178 | 0 | 0 | 36 | 213 | 1 | 178 | 9.67e-133 | 370 |
MS.gene78387.t1 | MTR_2g098000 | 100.000 | 178 | 0 | 0 | 36 | 213 | 1 | 178 | 9.67e-133 | 370 |
MS.gene78387.t1 | MTR_3g046320 | 94.382 | 178 | 10 | 0 | 36 | 213 | 1 | 178 | 7.74e-125 | 350 |
MS.gene78387.t1 | MTR_3g046320 | 95.402 | 174 | 8 | 0 | 40 | 213 | 3 | 176 | 9.29e-124 | 347 |
MS.gene78387.t1 | MTR_2g019720 | 62.353 | 85 | 32 | 0 | 127 | 211 | 1 | 85 | 2.18e-33 | 116 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78387.t1 | AT2G34480 | 82.828 | 198 | 33 | 1 | 17 | 213 | 20 | 217 | 9.58e-121 | 341 |
MS.gene78387.t1 | AT2G34480 | 90.230 | 174 | 17 | 0 | 40 | 213 | 5 | 178 | 1.01e-118 | 335 |
MS.gene78387.t1 | AT1G29965 | 87.079 | 178 | 23 | 0 | 36 | 213 | 1 | 178 | 4.35e-117 | 331 |
MS.gene78387.t1 | AT3G14600 | 87.079 | 178 | 23 | 0 | 36 | 213 | 1 | 178 | 1.27e-116 | 329 |
MS.gene78387.t1 | AT1G29970 | 89.017 | 173 | 19 | 0 | 41 | 213 | 140 | 312 | 2.63e-114 | 328 |
Find 55 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACCAATGGGAACTTGATTT+TGG | 0.119520 | 2.3:+5233104 | None:intergenic |
CATAAACAGGTTGGGCTTCT+TGG | 0.201042 | 2.3:+5233032 | None:intergenic |
AGATTAAGAACTATGGAATT+TGG | 0.243479 | 2.3:-5233326 | MS.gene78387:CDS |
GAAAAGTAATGGACAAGTTT+TGG | 0.246012 | 2.3:-5234061 | MS.gene78387:CDS |
GTTGGGCTTCTTGGCTTTGT+AGG | 0.248408 | 2.3:+5233041 | None:intergenic |
ACTACAATCAGCTCGGAAAA+TGG | 0.314844 | 2.3:-5234419 | MS.gene78387:CDS |
ACGAAATGGCATCTCGTCAT+AGG | 0.320455 | 2.3:-5233215 | MS.gene78387:CDS |
AGATTTATCGCATGAAGCTT+TGG | 0.333905 | 2.3:-5234236 | MS.gene78387:CDS |
AAAAGGTCCACCATTGATTA+GGG | 0.340282 | 2.3:-5234497 | MS.gene78387:CDS |
GATTTATCGCATGAAGCTTT+GGG | 0.349457 | 2.3:-5234235 | MS.gene78387:CDS |
CCTACCAAGATTAAGAACTA+TGG | 0.366976 | 2.3:-5233333 | MS.gene78387:CDS |
AACTTACCAGAACTTGGATT+TGG | 0.367421 | 2.3:+5234194 | None:intergenic |
TCGAACTCAATGGGTCAAAA+AGG | 0.370780 | 2.3:-5234514 | None:intergenic |
TCCCAGCTAATCTGTGCAAA+AGG | 0.391912 | 2.3:-5233152 | MS.gene78387:CDS |
ATTCTCTGAATCACATAAAC+AGG | 0.392786 | 2.3:+5233019 | None:intergenic |
AATTCCATAGTTCTTAATCT+TGG | 0.403701 | 2.3:+5233329 | None:intergenic |
CATTGGTGTACAAGAAGATT+AGG | 0.404454 | 2.3:-5233089 | MS.gene78387:CDS |
AGCTTCATGCGATAAATCTT+AGG | 0.407205 | 2.3:+5234240 | None:intergenic |
TGGTGGCGGTCTTAATGATC+TGG | 0.424945 | 2.3:+5233175 | None:intergenic |
TACCGTGATACTACTCTAAA+CGG | 0.448863 | 2.3:-5233258 | MS.gene78387:CDS |
ATAAGGAACTTACCAGAACT+TGG | 0.449276 | 2.3:+5234188 | None:intergenic |
CTGAATCACATAAACAGGTT+GGG | 0.459132 | 2.3:+5233024 | None:intergenic |
TTCGTGCCAAATCCAAGTTC+TGG | 0.468779 | 2.3:-5234200 | MS.gene78387:intron |
TAAAATAAAACCCTAATCAA+TGG | 0.482054 | 2.3:+5234487 | None:intergenic |
CTCTTCCGACAACCTGGTAC+TGG | 0.487827 | 2.3:+5234289 | None:intergenic |
TTTCTTGAGGAAGTTGAAGA+AGG | 0.490067 | 2.3:-5234088 | MS.gene78387:CDS |
TAATCTTCTTGTACACCAAT+GGG | 0.498182 | 2.3:+5233091 | None:intergenic |
TGGCATCTCGTCATAGGGTC+AGG | 0.499078 | 2.3:-5233209 | MS.gene78387:CDS |
TTGCGTTATCAGAGTCGTAC+TGG | 0.505845 | 2.3:-5233303 | MS.gene78387:CDS |
AGAAGATTAGGCCTCCTACT+AGG | 0.511127 | 2.3:-5233077 | MS.gene78387:CDS |
TCCACAGTTTCACCAGTACC+AGG | 0.511898 | 2.3:-5234301 | MS.gene78387:intron |
AAGAAGGTTAAGAAAAGTAA+TGG | 0.518066 | 2.3:-5234072 | MS.gene78387:CDS |
TTTGCACAGATTAGCTGGGA+TGG | 0.520373 | 2.3:+5233155 | None:intergenic |
GGAGACAATGTACAACGAAA+TGG | 0.522780 | 2.3:-5233229 | MS.gene78387:CDS |
CCCAGCTAATCTGTGCAAAA+GGG | 0.524734 | 2.3:-5233151 | MS.gene78387:CDS |
AAGAGCACTTCCCACCGAAA+AGG | 0.530461 | 2.3:-5234271 | MS.gene78387:CDS |
TCTGAATCACATAAACAGGT+TGG | 0.535578 | 2.3:+5233023 | None:intergenic |
TTTCACCAGTACCAGGTTGT+CGG | 0.538716 | 2.3:-5234294 | MS.gene78387:CDS |
CTAATCTTCTTGTACACCAA+TGG | 0.540589 | 2.3:+5233090 | None:intergenic |
CGAAATGGCATCTCGTCATA+GGG | 0.541059 | 2.3:-5233214 | MS.gene78387:CDS |
CCATAGTTCTTAATCTTGGT+AGG | 0.548600 | 2.3:+5233333 | None:intergenic |
TCGGAAAATGGTTAACGCTA+AGG | 0.552440 | 2.3:-5234407 | MS.gene78387:intron |
GGATTTGGCACGAACCTCGT+TGG | 0.555937 | 2.3:+5234209 | None:intergenic |
CAGATTAGCTGGGATGGTGG+CGG | 0.559030 | 2.3:+5233161 | None:intergenic |
TTCCAAAATCAAGTTCCCAT+TGG | 0.559786 | 2.3:-5233106 | MS.gene78387:CDS |
GTCTTAATGATCTGGATGCA+AGG | 0.582689 | 2.3:+5233183 | None:intergenic |
GAAGTGCTCTTCCGACAACC+TGG | 0.588662 | 2.3:+5234283 | None:intergenic |
GCACAGATTAGCTGGGATGG+TGG | 0.592241 | 2.3:+5233158 | None:intergenic |
AATAAAACCCTAATCAATGG+TGG | 0.601555 | 2.3:+5234490 | None:intergenic |
TGGTTATCACAATATGTACA+AGG | 0.613559 | 2.3:-5233283 | MS.gene78387:CDS |
ACAGAAAACTACAATCAGCT+CGG | 0.620129 | 2.3:-5234426 | MS.gene78387:CDS |
TACTACTCTAAACGGTGCTG+TGG | 0.650976 | 2.3:-5233250 | MS.gene78387:CDS |
ATTGTTGTAGGTATTTCTTG+AGG | 0.651477 | 2.3:-5234101 | MS.gene78387:intron |
CACCGTTTAGAGTAGTATCA+CGG | 0.660256 | 2.3:+5233256 | None:intergenic |
GAAGCTTTGGGCAACCAACG+AGG | 0.727612 | 2.3:-5234223 | MS.gene78387:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAATAATGTTAATTGTTGT+AGG | - | chr2.3:5233421-5233440 | MS.gene78387:intron | 15.0% |
!! | ATTCAAATTTGATACAACTT+AGG | - | chr2.3:5233536-5233555 | MS.gene78387:intron | 20.0% |
!! | CAATTATTATAGGCAAAATA+AGG | - | chr2.3:5234040-5234059 | MS.gene78387:intron | 20.0% |
!! | CGTATTGTTTCAATTATTAT+AGG | - | chr2.3:5234030-5234049 | MS.gene78387:intron | 20.0% |
!! | TAAAATAAAACCCTAATCAA+TGG | + | chr2.3:5233050-5233069 | None:intergenic | 20.0% |
!! | TTGTTGTAACATATCTATTA+AGG | - | chr2.3:5233878-5233897 | MS.gene78387:intron | 20.0% |
! | AAGAAGGTTAAGAAAAGTAA+TGG | - | chr2.3:5233462-5233481 | MS.gene78387:intron | 25.0% |
! | AATAGATATGTTACAACAAC+AGG | + | chr2.3:5233877-5233896 | None:intergenic | 25.0% |
! | AATTCCATAGTTCTTAATCT+TGG | + | chr2.3:5234208-5234227 | None:intergenic | 25.0% |
! | AGATTAAGAACTATGGAATT+TGG | - | chr2.3:5234208-5234227 | MS.gene78387:CDS | 25.0% |
! | TGTATCAAATTTGAATCAAG+AGG | + | chr2.3:5233532-5233551 | None:intergenic | 25.0% |
! | TTATGTCAAAATCCAAACAT+AGG | - | chr2.3:5233848-5233867 | MS.gene78387:intron | 25.0% |
AAGATCTGCAATCAAAAAAC+AGG | + | chr2.3:5234171-5234190 | None:intergenic | 30.0% | |
AATAAAACCCTAATCAATGG+TGG | + | chr2.3:5233047-5233066 | None:intergenic | 30.0% | |
AATTGTGGTGAAAGAATATG+TGG | - | chr2.3:5234065-5234084 | MS.gene78387:CDS | 30.0% | |
ACAAGTCATAAACTGTATCA+TGG | + | chr2.3:5233697-5233716 | None:intergenic | 30.0% | |
ATAACAACTAAAGCAAACAC+AGG | + | chr2.3:5234102-5234121 | None:intergenic | 30.0% | |
ATTGTTGTAGGTATTTCTTG+AGG | - | chr2.3:5233433-5233452 | MS.gene78387:intron | 30.0% | |
TAACAACTAAAGCAAACACA+GGG | + | chr2.3:5234101-5234120 | None:intergenic | 30.0% | |
TAATCTTCTTGTACACCAAT+GGG | + | chr2.3:5234446-5234465 | None:intergenic | 30.0% | |
TGGTTATCACAATATGTACA+AGG | - | chr2.3:5234251-5234270 | MS.gene78387:CDS | 30.0% | |
TTTGTGTGTGAATCTTAACA+CGG | - | chr2.3:5233195-5233214 | MS.gene78387:CDS | 30.0% | |
!! | TGACTTGTTTGAAAGTACTT+TGG | - | chr2.3:5233709-5233728 | MS.gene78387:intron | 30.0% |
!! | TGTTTGAAAGTACTTTGGTT+GGG | - | chr2.3:5233714-5233733 | MS.gene78387:intron | 30.0% |
!! | TTGTTTGAAAGTACTTTGGT+TGG | - | chr2.3:5233713-5233732 | MS.gene78387:intron | 30.0% |
!!! | GAAAAGTAATGGACAAGTTT+TGG | - | chr2.3:5233473-5233492 | MS.gene78387:intron | 30.0% |
AACAACAGGTTACCTATGTT+TGG | + | chr2.3:5233863-5233882 | None:intergenic | 35.0% | |
AACTTACCAGAACTTGGATT+TGG | + | chr2.3:5233343-5233362 | None:intergenic | 35.0% | |
ACAGAAAACTACAATCAGCT+CGG | - | chr2.3:5233108-5233127 | MS.gene78387:CDS | 35.0% | |
ACAGCTTACACTCAAATGTT+TGG | + | chr2.3:5233812-5233831 | None:intergenic | 35.0% | |
AGATTTATCGCATGAAGCTT+TGG | - | chr2.3:5233298-5233317 | MS.gene78387:CDS | 35.0% | |
AGCTTCATGCGATAAATCTT+AGG | + | chr2.3:5233297-5233316 | None:intergenic | 35.0% | |
AGGCAAAATAAGGCTAATTG+TGG | - | chr2.3:5234050-5234069 | MS.gene78387:CDS | 35.0% | |
ATAAGGAACTTACCAGAACT+TGG | + | chr2.3:5233349-5233368 | None:intergenic | 35.0% | |
CATTGGTGTACAAGAAGATT+AGG | - | chr2.3:5234445-5234464 | MS.gene78387:CDS | 35.0% | |
CCATAGTTCTTAATCTTGGT+AGG | + | chr2.3:5234204-5234223 | None:intergenic | 35.0% | |
CCTACCAAGATTAAGAACTA+TGG | - | chr2.3:5234201-5234220 | MS.gene78387:CDS | 35.0% | |
CTAATCTTCTTGTACACCAA+TGG | + | chr2.3:5234447-5234466 | None:intergenic | 35.0% | |
GATTTATCGCATGAAGCTTT+GGG | - | chr2.3:5233299-5233318 | MS.gene78387:CDS | 35.0% | |
TACCGTGATACTACTCTAAA+CGG | - | chr2.3:5234276-5234295 | MS.gene78387:CDS | 35.0% | |
TCAGCTATGAAATTAGTCAC+TGG | + | chr2.3:5233980-5233999 | None:intergenic | 35.0% | |
TCCAAAAAGACTGCAATTGA+AGG | + | chr2.3:5234129-5234148 | None:intergenic | 35.0% | |
TGTCTTGAGTATTTCCTAGA+GGG | - | chr2.3:5233941-5233960 | MS.gene78387:intron | 35.0% | |
TTCCAAAATCAAGTTCCCAT+TGG | - | chr2.3:5234428-5234447 | MS.gene78387:CDS | 35.0% | |
TTTCTTGAGGAAGTTGAAGA+AGG | - | chr2.3:5233446-5233465 | MS.gene78387:intron | 35.0% | |
TTTGGACATATAGGGGTTTA+TGG | - | chr2.3:5234143-5234162 | MS.gene78387:intron | 35.0% | |
! | AAAAAGGTCCACCATTGATT+AGG | - | chr2.3:5233036-5233055 | MS.gene78387:CDS | 35.0% |
! | AAAAGGTCCACCATTGATTA+GGG | - | chr2.3:5233037-5233056 | MS.gene78387:CDS | 35.0% |
! | AAAGTACTTTGGTTGGGAAA+GGG | - | chr2.3:5233720-5233739 | MS.gene78387:intron | 35.0% |
! | ACCTTCAATTGCAGTCTTTT+TGG | - | chr2.3:5234125-5234144 | MS.gene78387:intron | 35.0% |
! | CAGTCTTTTTGGACATATAG+GGG | - | chr2.3:5234136-5234155 | MS.gene78387:intron | 35.0% |
! | CTTAGGATGTTCATCCTTTT+CGG | + | chr2.3:5233280-5233299 | None:intergenic | 35.0% |
! | GCAGTCTTTTTGGACATATA+GGG | - | chr2.3:5234135-5234154 | MS.gene78387:intron | 35.0% |
! | TGCAGTCTTTTTGGACATAT+AGG | - | chr2.3:5234134-5234153 | MS.gene78387:intron | 35.0% |
!!! | ACAAGTTTTGGCTATCAATG+AGG | - | chr2.3:5233485-5233504 | MS.gene78387:intron | 35.0% |
!!! | GGAACTTGATTTTGGAATTG+TGG | + | chr2.3:5234425-5234444 | None:intergenic | 35.0% |
!!! | GTTCTGTTTTGATTAGTGCT+GGG | - | chr2.3:5233746-5233765 | MS.gene78387:intron | 35.0% |
!!! | TGGCTTTGTAGGTTGTTTTT+AGG | + | chr2.3:5234485-5234504 | None:intergenic | 35.0% |
!!! | TGTTCTGTTTTGATTAGTGC+TGG | - | chr2.3:5233745-5233764 | MS.gene78387:intron | 35.0% |
AACTTAGGCTGTGTTTGGAT+TGG | - | chr2.3:5233551-5233570 | MS.gene78387:intron | 40.0% | |
ACTACAATCAGCTCGGAAAA+TGG | - | chr2.3:5233115-5233134 | MS.gene78387:CDS | 40.0% | |
CTGTCTTGAGTATTTCCTAG+AGG | - | chr2.3:5233940-5233959 | MS.gene78387:intron | 40.0% | |
GATACAACTTAGGCTGTGTT+TGG | - | chr2.3:5233546-5233565 | MS.gene78387:intron | 40.0% | |
GGAGACAATGTACAACGAAA+TGG | - | chr2.3:5234305-5234324 | MS.gene78387:intron | 40.0% | |
GGCATACAGTAACAGTTTGA+AGG | + | chr2.3:5233921-5233940 | None:intergenic | 40.0% | |
GGTGAAAGAATATGTGGAGT+AGG | - | chr2.3:5234071-5234090 | MS.gene78387:CDS | 40.0% | |
GTCTTAATGATCTGGATGCA+AGG | + | chr2.3:5234354-5234373 | None:intergenic | 40.0% | |
GTTTCATGCTAAAACCCTCT+AGG | + | chr2.3:5233958-5233977 | None:intergenic | 40.0% | |
TCGGAAAATGGTTAACGCTA+AGG | - | chr2.3:5233127-5233146 | MS.gene78387:CDS | 40.0% | |
! | CACCAATGGGAACTTGATTT+TGG | + | chr2.3:5234433-5234452 | None:intergenic | 40.0% |
! | CACCGTTTAGAGTAGTATCA+CGG | + | chr2.3:5234281-5234300 | None:intergenic | 40.0% |
! | CTCTAGGAAATACTCAAGAC+AGG | + | chr2.3:5233942-5233961 | None:intergenic | 40.0% |
!! | ATACCGAAGAAGTGCTTCTA+CGG | + | chr2.3:5233608-5233627 | None:intergenic | 40.0% |
!! | GAAAGTACTTTGGTTGGGAA+AGG | - | chr2.3:5233719-5233738 | MS.gene78387:intron | 40.0% |
!!! | GTTGTTTTTAGGCTCCTAGT+AGG | + | chr2.3:5234474-5234493 | None:intergenic | 40.0% |
ACGAAATGGCATCTCGTCAT+AGG | - | chr2.3:5234319-5234338 | MS.gene78387:intron | 45.0% | |
AGAAGATTAGGCCTCCTACT+AGG | - | chr2.3:5234457-5234476 | MS.gene78387:CDS | 45.0% | |
CCCAGCTAATCTGTGCAAAA+GGG | - | chr2.3:5234383-5234402 | MS.gene78387:intron | 45.0% | |
CGAAATGGCATCTCGTCATA+GGG | - | chr2.3:5234320-5234339 | MS.gene78387:intron | 45.0% | |
TCCCAGCTAATCTGTGCAAA+AGG | - | chr2.3:5234382-5234401 | MS.gene78387:intron | 45.0% | |
TTCGTGCCAAATCCAAGTTC+TGG | - | chr2.3:5233334-5233353 | MS.gene78387:CDS | 45.0% | |
TTGCGTTATCAGAGTCGTAC+TGG | - | chr2.3:5234231-5234250 | MS.gene78387:CDS | 45.0% | |
TTTCACCAGTACCAGGTTGT+CGG | - | chr2.3:5233240-5233259 | MS.gene78387:CDS | 45.0% | |
! | AGGATGTTCATCCTTTTCGG+TGG | + | chr2.3:5233277-5233296 | None:intergenic | 45.0% |
! | CATAAACAGGTTGGGCTTCT+TGG | + | chr2.3:5234505-5234524 | None:intergenic | 45.0% |
! | GGATGTTCATCCTTTTCGGT+GGG | + | chr2.3:5233276-5233295 | None:intergenic | 45.0% |
! | TACTACTCTAAACGGTGCTG+TGG | - | chr2.3:5234284-5234303 | MS.gene78387:CDS | 45.0% |
! | TCCCTTTTGCACAGATTAGC+TGG | + | chr2.3:5234387-5234406 | None:intergenic | 45.0% |
! | TTTGCACAGATTAGCTGGGA+TGG | + | chr2.3:5234382-5234401 | None:intergenic | 45.0% |
!! | CCCTTTTGCACAGATTAGCT+GGG | + | chr2.3:5234386-5234405 | None:intergenic | 45.0% |
!! | GTTTTTAGGCTCCTAGTAGG+AGG | + | chr2.3:5234471-5234490 | None:intergenic | 45.0% |
!! | TACCGAAGAAGTGCTTCTAC+GGG | + | chr2.3:5233607-5233626 | None:intergenic | 45.0% |
!! | TGTTAATAAATAAATAAATA+AGG | + | chr2.3:5233366-5233385 | None:intergenic | 5.0% |
TCCACAGTTTCACCAGTACC+AGG | - | chr2.3:5233233-5233252 | MS.gene78387:CDS | 50.0% | |
!! | AAGAGCACTTCCCACCGAAA+AGG | - | chr2.3:5233263-5233282 | MS.gene78387:CDS | 50.0% |
!! | ACCTGGTACTGGTGAAACTG+TGG | + | chr2.3:5233237-5233256 | None:intergenic | 50.0% |
!! | GACCCGTAGAAGCACTTCTT+CGG | - | chr2.3:5233602-5233621 | MS.gene78387:intron | 50.0% |
!! | GTTGGGCTTCTTGGCTTTGT+AGG | + | chr2.3:5234496-5234515 | None:intergenic | 50.0% |
!! | TGGTGGCGGTCTTAATGATC+TGG | + | chr2.3:5234362-5234381 | None:intergenic | 50.0% |
CTCTTCCGACAACCTGGTAC+TGG | + | chr2.3:5233248-5233267 | None:intergenic | 55.0% | |
GGATTTGGCACGAACCTCGT+TGG | + | chr2.3:5233328-5233347 | None:intergenic | 55.0% | |
TGGCATCTCGTCATAGGGTC+AGG | - | chr2.3:5234325-5234344 | MS.gene78387:intron | 55.0% | |
! | CAGATTAGCTGGGATGGTGG+CGG | + | chr2.3:5234376-5234395 | None:intergenic | 55.0% |
! | GAAGTGCTCTTCCGACAACC+TGG | + | chr2.3:5233254-5233273 | None:intergenic | 55.0% |
! | GCACAGATTAGCTGGGATGG+TGG | + | chr2.3:5234379-5234398 | None:intergenic | 55.0% |
!! | GAAGCTTTGGGCAACCAACG+AGG | - | chr2.3:5233311-5233330 | MS.gene78387:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 5233029 | 5234527 | 5233029 | ID=MS.gene78387 |
chr2.3 | mRNA | 5233029 | 5234527 | 5233029 | ID=MS.gene78387.t1;Parent=MS.gene78387 |
chr2.3 | exon | 5234408 | 5234527 | 5234408 | ID=MS.gene78387.t1.exon1;Parent=MS.gene78387.t1 |
chr2.3 | CDS | 5234408 | 5234527 | 5234408 | ID=cds.MS.gene78387.t1;Parent=MS.gene78387.t1 |
chr2.3 | exon | 5234201 | 5234316 | 5234201 | ID=MS.gene78387.t1.exon2;Parent=MS.gene78387.t1 |
chr2.3 | CDS | 5234201 | 5234316 | 5234201 | ID=cds.MS.gene78387.t1;Parent=MS.gene78387.t1 |
chr2.3 | exon | 5234050 | 5234113 | 5234050 | ID=MS.gene78387.t1.exon3;Parent=MS.gene78387.t1 |
chr2.3 | CDS | 5234050 | 5234113 | 5234050 | ID=cds.MS.gene78387.t1;Parent=MS.gene78387.t1 |
chr2.3 | exon | 5233029 | 5233370 | 5233029 | ID=MS.gene78387.t1.exon4;Parent=MS.gene78387.t1 |
chr2.3 | CDS | 5233029 | 5233370 | 5233029 | ID=cds.MS.gene78387.t1;Parent=MS.gene78387.t1 |
Gene Sequence |
Protein sequence |