Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29778.t1 | XP_024633883.1 | 99.4 | 173 | 1 | 0 | 1 | 173 | 4 | 176 | 4.70E-95 | 357.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29778.t1 | P51418 | 89.6 | 173 | 18 | 0 | 1 | 173 | 6 | 178 | 2.8e-88 | 325.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29778.t1 | I3SJF6 | 99.4 | 173 | 1 | 0 | 1 | 173 | 6 | 178 | 3.4e-95 | 357.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene039012 | MS.gene29778 | PPI |
| MS.gene29778 | MS.gene48048 | PPI |
| MS.gene023381 | MS.gene29778 | PPI |
| MS.gene29778 | MS.gene08259 | PPI |
| MS.gene019193 | MS.gene29778 | PPI |
| MS.gene77617 | MS.gene29778 | PPI |
| MS.gene29778 | MS.gene057092 | PPI |
| MS.gene017078 | MS.gene29778 | PPI |
| MS.gene017080 | MS.gene29778 | PPI |
| MS.gene69509 | MS.gene29778 | PPI |
| MS.gene45549 | MS.gene29778 | PPI |
| MS.gene29778 | MS.gene78387 | PPI |
| MS.gene038296 | MS.gene29778 | PPI |
| MS.gene29778 | MS.gene052057 | PPI |
| MS.gene038298 | MS.gene29778 | PPI |
| MS.gene29778 | MS.gene22178 | PPI |
| MS.gene09188 | MS.gene29778 | PPI |
| MS.gene09187 | MS.gene29778 | PPI |
| MS.gene29778 | MS.gene92155 | PPI |
| MS.gene29778 | MS.gene09046 | PPI |
| MS.gene29778 | MS.gene31095 | PPI |
| MS.gene08260 | MS.gene29778 | PPI |
| MS.gene48046 | MS.gene29778 | PPI |
| MS.gene29778 | MS.gene073967 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29778.t1 | MTR_3g046320 | 99.422 | 173 | 1 | 0 | 1 | 173 | 6 | 178 | 3.39e-129 | 359 |
| MS.gene29778.t1 | MTR_3g046320 | 99.422 | 173 | 1 | 0 | 1 | 173 | 4 | 176 | 3.77e-129 | 359 |
| MS.gene29778.t1 | MTR_5g091135 | 95.376 | 173 | 8 | 0 | 1 | 173 | 6 | 178 | 1.21e-123 | 345 |
| MS.gene29778.t1 | MTR_5g091120 | 95.376 | 173 | 8 | 0 | 1 | 173 | 6 | 178 | 1.21e-123 | 345 |
| MS.gene29778.t1 | MTR_2g098000 | 95.376 | 173 | 8 | 0 | 1 | 173 | 6 | 178 | 1.21e-123 | 345 |
| MS.gene29778.t1 | MTR_2g019720 | 69.863 | 73 | 22 | 0 | 87 | 159 | 1 | 73 | 3.31e-32 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29778.t1 | AT2G34480 | 89.595 | 173 | 18 | 0 | 1 | 173 | 45 | 217 | 1.23e-117 | 332 |
| MS.gene29778.t1 | AT2G34480 | 89.595 | 173 | 18 | 0 | 1 | 173 | 6 | 178 | 1.40e-117 | 330 |
| MS.gene29778.t1 | AT1G29965 | 88.953 | 172 | 19 | 0 | 2 | 173 | 7 | 178 | 2.24e-116 | 327 |
| MS.gene29778.t1 | AT3G14600 | 87.861 | 173 | 21 | 0 | 1 | 173 | 6 | 178 | 2.50e-115 | 324 |
| MS.gene29778.t1 | AT1G29970 | 88.953 | 172 | 19 | 0 | 2 | 173 | 141 | 312 | 1.09e-113 | 325 |
Find 51 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTAAGAACTACGGAATT+TGG | 0.227031 | 3.4:+41277302 | MS.gene29778:CDS |
| TACCGCGACACTACACTAAA+TGG | 0.308319 | 3.4:+41277370 | MS.gene29778:CDS |
| TTGTCTTGAGCTTCCTGGTT+GGG | 0.316740 | 3.4:-41277564 | None:intergenic |
| GTATGTTGTCTTGAGCTTCC+TGG | 0.318485 | 3.4:-41277569 | None:intergenic |
| CATTGGTGTTTAAGAAGATT+AGG | 0.359879 | 3.4:+41277539 | MS.gene29778:CDS |
| GACTTACCAGAACTTGGATT+TGG | 0.361331 | 3.4:-41274677 | None:intergenic |
| CTTGTACATGTTGTGATATC+CGG | 0.368635 | 3.4:-41277344 | None:intergenic |
| AATTCCGTAGTTCTTAATCT+TGG | 0.384261 | 3.4:-41277299 | None:intergenic |
| AACTTCATCCTATAGATCTT+AGG | 0.390754 | 3.4:-41274631 | None:intergenic |
| CGAAATACATACCTCATTGA+TGG | 0.398520 | 3.4:-41275065 | None:intergenic |
| TCCCAGCTAATCTTTGCAAA+AGG | 0.406086 | 3.4:+41277476 | MS.gene29778:CDS |
| ATGAACATCCTAAGATCTAT+AGG | 0.408451 | 3.4:+41274623 | MS.gene29778:CDS |
| TGTCTTGAGCTTCCTGGTTG+GGG | 0.409521 | 3.4:-41277563 | None:intergenic |
| ATCATTGACTTACCAGAACT+TGG | 0.415763 | 3.4:-41274683 | None:intergenic |
| GAGAATTACATAAACATGTT+GGG | 0.416940 | 3.4:-41277604 | None:intergenic |
| TTGTGGCAGTCTTGATGATC+TGG | 0.419281 | 3.4:-41277453 | None:intergenic |
| GGATTTGGCACGCACTTCAT+TGG | 0.425117 | 3.4:-41274662 | None:intergenic |
| CTTCGATACCAGAGCCGAAC+CGG | 0.434164 | 3.4:+41277325 | MS.gene29778:CDS |
| CCGTAGTTCTTAATCTTGGT+TGG | 0.442883 | 3.4:-41277295 | None:intergenic |
| TGCGTGCCAAATCCAAGTTC+TGG | 0.459519 | 3.4:+41274671 | MS.gene29778:CDS |
| TGTGATATCCGGTTCGGCTC+TGG | 0.459842 | 3.4:-41277333 | None:intergenic |
| TAATCTTCTTAAACACCAAT+GGG | 0.461177 | 3.4:-41277537 | None:intergenic |
| TGAATATATGTACAATGAAA+TGG | 0.482427 | 3.4:+41277399 | MS.gene29778:CDS |
| CCCAGCTAATCTTTGCAAAA+GGG | 0.489014 | 3.4:+41277477 | MS.gene29778:CDS |
| GATCTATAGGATGAAGTTGT+GGG | 0.489458 | 3.4:+41274636 | MS.gene29778:CDS |
| TGAGAATTACATAAACATGT+TGG | 0.490122 | 3.4:-41277605 | None:intergenic |
| CTCTTCCCACAACCTGGTAC+TGG | 0.493497 | 3.4:-41274582 | None:intergenic |
| ACATGTTGTGATATCCGGTT+CGG | 0.502939 | 3.4:-41277339 | None:intergenic |
| TGGCTTCACGTCATAGAGTC+AGG | 0.506716 | 3.4:+41277419 | MS.gene29778:CDS |
| TTTGGCACGCACTTCATTGG+TGG | 0.507151 | 3.4:-41274659 | None:intergenic |
| GTTGTCTTGAGCTTCCTGGT+TGG | 0.517024 | 3.4:-41277565 | None:intergenic |
| GTATCACCAGTACCAGGTTG+TGG | 0.520361 | 3.4:+41274576 | None:intergenic |
| AGATCTATAGGATGAAGTTG+TGG | 0.528188 | 3.4:+41274635 | MS.gene29778:CDS |
| CTAATCTTCTTAAACACCAA+TGG | 0.530693 | 3.4:-41277538 | None:intergenic |
| AGAAGGTTAAGAAGAGCAAT+GGG | 0.531968 | 3.4:+41275032 | MS.gene29778:CDS |
| CGGATATCACAACATGTACA+AGG | 0.534565 | 3.4:+41277345 | MS.gene29778:CDS |
| TATCACCAGTACCAGGTTGT+GGG | 0.550528 | 3.4:+41274577 | MS.gene29778:CDS |
| CTCTAAAATCAAGTTCCCAT+TGG | 0.554953 | 3.4:+41277522 | MS.gene29778:CDS |
| GGTTAAGAAGAGCAATGGGC+AGG | 0.558529 | 3.4:+41275036 | MS.gene29778:CDS |
| GGATGTTCATCCTTCTCAGT+AGG | 0.562491 | 3.4:-41274610 | None:intergenic |
| GTCTTGATGATCTGGATGCA+TGG | 0.564131 | 3.4:-41277445 | None:intergenic |
| GTCTTGAGCTTCCTGGTTGG+GGG | 0.565257 | 3.4:-41277562 | None:intergenic |
| GCAAAGATTAGCTGGGATTG+TGG | 0.567461 | 3.4:-41277470 | None:intergenic |
| AAGAAGGTTAAGAAGAGCAA+TGG | 0.574791 | 3.4:+41275031 | MS.gene29778:CDS |
| GAAGAGCTCTTCCCACAACC+TGG | 0.580673 | 3.4:-41274588 | None:intergenic |
| CCAACCAAGATTAAGAACTA+CGG | 0.592484 | 3.4:+41277295 | MS.gene29778:CDS |
| AAGAGCTCTTCCTACTGAGA+AGG | 0.593469 | 3.4:+41274600 | MS.gene29778:CDS |
| GAATCAGTATCACCAGTACC+AGG | 0.603715 | 3.4:+41274570 | None:intergenic |
| GAAGCTCAAGACAACATACA+AGG | 0.626427 | 3.4:+41277573 | MS.gene29778:CDS |
| CACCATTTAGTGTAGTGTCG+CGG | 0.677168 | 3.4:-41277372 | None:intergenic |
| GCAGGTGCTTGCCATCAATG+AGG | 0.695053 | 3.4:+41275054 | MS.gene29778:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTATTTATAGAAAAC+CGG | + | chr3.4:41276188-41276207 | MS.gene29778:intron | 10.0% |
| !! | TATATTATTTATAGAAAACC+GGG | + | chr3.4:41276189-41276208 | MS.gene29778:intron | 15.0% |
| !!! | ACAAAGGTTATAAAATATTT+TGG | + | chr3.4:41276812-41276831 | MS.gene29778:intron | 15.0% |
| !!! | TTTTTGTTTTGAAATTTTGT+AGG | + | chr3.4:41274990-41275009 | MS.gene29778:intron | 15.0% |
| !! | AACGTTAAAAAAAACAAGTT+GGG | - | chr3.4:41276265-41276284 | None:intergenic | 20.0% |
| !! | AAGCTATACATATATTGTTA+GGG | + | chr3.4:41276890-41276909 | MS.gene29778:intron | 20.0% |
| !! | AATTAAAACCTAAAACTTTG+AGG | - | chr3.4:41277223-41277242 | None:intergenic | 20.0% |
| !! | ACTCTATTAAAACATTTAGA+AGG | + | chr3.4:41275535-41275554 | MS.gene29778:intron | 20.0% |
| !! | CTCTATTAAAACATTTAGAA+GGG | + | chr3.4:41275536-41275555 | MS.gene29778:intron | 20.0% |
| !! | GAAATACAACAATAAAACAA+AGG | - | chr3.4:41275151-41275170 | None:intergenic | 20.0% |
| !! | TAAGCTATACATATATTGTT+AGG | + | chr3.4:41276889-41276908 | MS.gene29778:intron | 20.0% |
| !! | TATAATTTACTCTTCTTACT+AGG | - | chr3.4:41275482-41275501 | None:intergenic | 20.0% |
| !! | TGAATATATGTACAATGAAA+TGG | + | chr3.4:41277399-41277418 | MS.gene29778:CDS | 20.0% |
| !! | TTAAACACAAACTTACAATA+GGG | + | chr3.4:41276420-41276439 | MS.gene29778:intron | 20.0% |
| !! | TTTAAACACAAACTTACAAT+AGG | + | chr3.4:41276419-41276438 | MS.gene29778:intron | 20.0% |
| !!! | ATAAACTTTTACCTTTGTAA+TGG | - | chr3.4:41275890-41275909 | None:intergenic | 20.0% |
| !!! | ATGAGAAAAATGAAATTTTC+TGG | + | chr3.4:41276164-41276183 | MS.gene29778:intron | 20.0% |
| !!! | ATGTTAAAAAGTAGTATTGA+TGG | + | chr3.4:41275908-41275927 | MS.gene29778:intron | 20.0% |
| !!! | GTTAAACTATACACATTTTA+CGG | + | chr3.4:41276589-41276608 | MS.gene29778:intron | 20.0% |
| !!! | TGAAACATGAATTTTAACTA+AGG | + | chr3.4:41275415-41275434 | MS.gene29778:intron | 20.0% |
| !!! | TGAGAAAAATGAAATTTTCT+GGG | + | chr3.4:41276165-41276184 | MS.gene29778:intron | 20.0% |
| !!! | TGTTAAAAAGTAGTATTGAT+GGG | + | chr3.4:41275909-41275928 | MS.gene29778:intron | 20.0% |
| ! | AAATGATTGAAAACACGTTT+AGG | + | chr3.4:41276056-41276075 | MS.gene29778:intron | 25.0% |
| ! | AGAAGAGTAAATTATAGCTA+AGG | + | chr3.4:41275486-41275505 | MS.gene29778:intron | 25.0% |
| ! | AGCTATACATATATTGTTAG+GGG | + | chr3.4:41276891-41276910 | MS.gene29778:intron | 25.0% |
| ! | AGGTAAATTATATCGAAGTT+TGG | + | chr3.4:41276920-41276939 | MS.gene29778:intron | 25.0% |
| ! | ATCAGTCATTTAACTAAGTA+CGG | - | chr3.4:41276474-41276493 | None:intergenic | 25.0% |
| ! | GAACGTTAAAAAAAACAAGT+TGG | - | chr3.4:41276266-41276285 | None:intergenic | 25.0% |
| ! | GAATCATGCATCAAAAATTT+AGG | + | chr3.4:41276984-41277003 | MS.gene29778:intron | 25.0% |
| ! | TAATCTTCTTAAACACCAAT+GGG | - | chr3.4:41277540-41277559 | None:intergenic | 25.0% |
| ! | TTATGCAGTACTCTATTTAA+CGG | - | chr3.4:41277118-41277137 | None:intergenic | 25.0% |
| !! | ATTACAATTTTACCCTTAAG+TGG | - | chr3.4:41275679-41275698 | None:intergenic | 25.0% |
| !! | GAAAACGAAAACAAAGTATT+TGG | + | chr3.4:41275996-41276015 | MS.gene29778:intron | 25.0% |
| !! | TTACAATTTTACCCTTAAGT+GGG | - | chr3.4:41275678-41275697 | None:intergenic | 25.0% |
| !! | TTTGCATTGTTCTTGTTTAA+TGG | + | chr3.4:41274739-41274758 | MS.gene29778:intron | 25.0% |
| !!! | AACATGAATTTTAACTAAGG+TGG | + | chr3.4:41275418-41275437 | MS.gene29778:intron | 25.0% |
| !!! | CTGATATTTTCTTTGATTTG+AGG | - | chr3.4:41277051-41277070 | None:intergenic | 25.0% |
| !!! | TAAGATGGCAAAATTTTAAC+TGG | + | chr3.4:41275242-41275261 | MS.gene29778:intron | 25.0% |
| !!! | TCAATTTTTTATATGTCCTC+TGG | + | chr3.4:41276854-41276873 | MS.gene29778:intron | 25.0% |
| AAAAAACAAAATGCGATCAC+CGG | - | chr3.4:41274975-41274994 | None:intergenic | 30.0% | |
| AACTTCATCCTATAGATCTT+AGG | - | chr3.4:41274634-41274653 | None:intergenic | 30.0% | |
| AATTCCGTAGTTCTTAATCT+TGG | - | chr3.4:41277302-41277321 | None:intergenic | 30.0% | |
| ACAATAAAACAAAGGCTTCA+TGG | - | chr3.4:41275143-41275162 | None:intergenic | 30.0% | |
| AGAAAACGAAACAGAGTTAT+GGG | + | chr3.4:41275965-41275984 | MS.gene29778:intron | 30.0% | |
| AGATTAAGAACTACGGAATT+TGG | + | chr3.4:41277302-41277321 | MS.gene29778:CDS | 30.0% | |
| ATGAACATCCTAAGATCTAT+AGG | + | chr3.4:41274623-41274642 | MS.gene29778:CDS | 30.0% | |
| CAAGAATTGAGAAAAATGCA+TGG | - | chr3.4:41276528-41276547 | None:intergenic | 30.0% | |
| CTAATCTTCTTAAACACCAA+TGG | - | chr3.4:41277541-41277560 | None:intergenic | 30.0% | |
| CTCTTGCATATTCAAGAATA+TGG | + | chr3.4:41276621-41276640 | MS.gene29778:intron | 30.0% | |
| GAGGATTCGAAAAAAAATAG+TGG | + | chr3.4:41275300-41275319 | MS.gene29778:intron | 30.0% | |
| GATTCTCTGTTGTTAAACTT+TGG | + | chr3.4:41276491-41276510 | MS.gene29778:intron | 30.0% | |
| GCAAAAACACAAAACATCAT+TGG | - | chr3.4:41274868-41274887 | None:intergenic | 30.0% | |
| GTTTCAATTGCAGAAAATAG+CGG | - | chr3.4:41275401-41275420 | None:intergenic | 30.0% | |
| TATATCGAAGTTTGGACATA+GGG | + | chr3.4:41276928-41276947 | MS.gene29778:intron | 30.0% | |
| TTATATCGAAGTTTGGACAT+AGG | + | chr3.4:41276927-41276946 | MS.gene29778:intron | 30.0% | |
| TTGTAAAATTGCAGCACAAT+AGG | + | chr3.4:41275348-41275367 | MS.gene29778:intron | 30.0% | |
| TTGTTCATGAAAAGAGTTAC+CGG | + | chr3.4:41274953-41274972 | MS.gene29778:intron | 30.0% | |
| ! | AAACTTACAATAGGGCATTA+TGG | + | chr3.4:41276428-41276447 | MS.gene29778:intron | 30.0% |
| ! | AAGAAACTGTAGAACTTGTT+AGG | + | chr3.4:41276774-41276793 | MS.gene29778:intron | 30.0% |
| ! | CAAAGTATTTGGTTGAAAAC+AGG | + | chr3.4:41276007-41276026 | MS.gene29778:intron | 30.0% |
| ! | CATTGGTGTTTAAGAAGATT+AGG | + | chr3.4:41277539-41277558 | MS.gene29778:CDS | 30.0% |
| ! | CATTTTTCTCAATTCTTGTC+AGG | + | chr3.4:41276530-41276549 | MS.gene29778:intron | 30.0% |
| ! | GTAAGTTTGTGTTTAAAGCA+AGG | - | chr3.4:41276416-41276435 | None:intergenic | 30.0% |
| ! | TTTGTTCTGTTGATTAGTTC+TGG | + | chr3.4:41274772-41274791 | MS.gene29778:intron | 30.0% |
| !! | AGAAACTGTAGAACTTGTTA+GGG | + | chr3.4:41276775-41276794 | MS.gene29778:intron | 30.0% |
| !! | GTTCTAGTTTGTCTAATAGT+GGG | - | chr3.4:41277176-41277195 | None:intergenic | 30.0% |
| !! | GTTTCTATGGATTGTCTTTT+GGG | - | chr3.4:41275861-41275880 | None:intergenic | 30.0% |
| !! | TGTTTCTATGGATTGTCTTT+TGG | - | chr3.4:41275862-41275881 | None:intergenic | 30.0% |
| !! | TGTTTTTGCATTGCTCTTTT+TGG | + | chr3.4:41274879-41274898 | MS.gene29778:intron | 30.0% |
| !!! | ATCGTTTTTTCCATGTTTGT+TGG | - | chr3.4:41276311-41276330 | None:intergenic | 30.0% |
| !!! | GAATTTTAACTAAGGTGGTT+TGG | + | chr3.4:41275423-41275442 | MS.gene29778:intron | 30.0% |
| !!! | GGAACTTGATTTTAGAGTTA+TGG | - | chr3.4:41277519-41277538 | None:intergenic | 30.0% |
| !!! | TTTTTTGAGAAAGCTGAAGA+AGG | + | chr3.4:41275015-41275034 | MS.gene29778:CDS | 30.0% |
| AACATCTGCGATGAATAAGA+TGG | + | chr3.4:41275227-41275246 | MS.gene29778:intron | 35.0% | |
| AAGAAGGTTAAGAAGAGCAA+TGG | + | chr3.4:41275031-41275050 | MS.gene29778:CDS | 35.0% | |
| AAGAGAACGAAACAGAGTAA+TGG | + | chr3.4:41275936-41275955 | MS.gene29778:intron | 35.0% | |
| ACAATAGGATTGCTATGTAG+TGG | + | chr3.4:41275363-41275382 | MS.gene29778:intron | 35.0% | |
| AGAAGGTTAAGAAGAGCAAT+GGG | + | chr3.4:41275032-41275051 | MS.gene29778:CDS | 35.0% | |
| AGAGAACGAAACAGAGTAAT+GGG | + | chr3.4:41275937-41275956 | MS.gene29778:intron | 35.0% | |
| AGATCTATAGGATGAAGTTG+TGG | + | chr3.4:41274635-41274654 | MS.gene29778:CDS | 35.0% | |
| ATTGAAAACACGTTTAGGTG+AGG | + | chr3.4:41276061-41276080 | MS.gene29778:intron | 35.0% | |
| ATTTAGGAGTAAGTCACTGT+TGG | + | chr3.4:41277000-41277019 | MS.gene29778:intron | 35.0% | |
| CCAACCAAGATTAAGAACTA+CGG | + | chr3.4:41277295-41277314 | MS.gene29778:CDS | 35.0% | |
| CGAAATACATACCTCATTGA+TGG | - | chr3.4:41275068-41275087 | None:intergenic | 35.0% | |
| CTTGTACATGTTGTGATATC+CGG | - | chr3.4:41277347-41277366 | None:intergenic | 35.0% | |
| GAAACAACATGCCATTACAA+AGG | + | chr3.4:41275876-41275895 | MS.gene29778:intron | 35.0% | |
| GAGAAAACGAAACAGAGTTA+TGG | + | chr3.4:41275964-41275983 | MS.gene29778:intron | 35.0% | |
| GATCTATAGGATGAAGTTGT+GGG | + | chr3.4:41274636-41274655 | MS.gene29778:CDS | 35.0% | |
| GGAAAAAACGATTCAGAACA+AGG | + | chr3.4:41276319-41276338 | MS.gene29778:intron | 35.0% | |
| TATATTGTTAGGGGTCATTG+AGG | + | chr3.4:41276900-41276919 | MS.gene29778:intron | 35.0% | |
| TCAGTACCAAAGAATACAGA+AGG | - | chr3.4:41276666-41276685 | None:intergenic | 35.0% | |
| TCCTAACATGCTGGTATTAA+GGG | - | chr3.4:41276723-41276742 | None:intergenic | 35.0% | |
| TTCTGTATTCTTTGGTACTG+AGG | + | chr3.4:41276665-41276684 | MS.gene29778:intron | 35.0% | |
| TTGAAAACACGTTTAGGTGA+GGG | + | chr3.4:41276062-41276081 | MS.gene29778:intron | 35.0% | |
| TTTAGGAGTAAGTCACTGTT+GGG | + | chr3.4:41277001-41277020 | MS.gene29778:intron | 35.0% | |
| TTTGCAAATGTTGCTCGTAA+TGG | + | chr3.4:41275172-41275191 | MS.gene29778:intron | 35.0% | |
| TTTGGATGGGATAAACATGT+TGG | + | chr3.4:41274897-41274916 | MS.gene29778:intron | 35.0% | |
| ! | ATGGAACATGATAGAGTACT+TGG | + | chr3.4:41276640-41276659 | MS.gene29778:intron | 35.0% |
| ! | GATTGCTATGTAGTGGAATT+TGG | + | chr3.4:41275370-41275389 | MS.gene29778:intron | 35.0% |
| ! | TTGCATTGCTCTTTTTGGAT+GGG | + | chr3.4:41274884-41274903 | MS.gene29778:intron | 35.0% |
| ! | TTTGCATTGCTCTTTTTGGA+TGG | + | chr3.4:41274883-41274902 | MS.gene29778:intron | 35.0% |
| !! | ATCATTGACTTACCAGAACT+TGG | - | chr3.4:41274686-41274705 | None:intergenic | 35.0% |
| !! | CGTTCTAGTTTGTCTAATAG+TGG | - | chr3.4:41277177-41277196 | None:intergenic | 35.0% |
| !! | CTCTAAAATCAAGTTCCCAT+TGG | + | chr3.4:41277522-41277541 | MS.gene29778:CDS | 35.0% |
| !! | GTAATGGCATGTTGTTTCTA+TGG | - | chr3.4:41275874-41275893 | None:intergenic | 35.0% |
| !! | TCCTGACTACATTGGTTTAA+AGG | - | chr3.4:41275582-41275601 | None:intergenic | 35.0% |
| !! | TTGTCTAATAGTGGGTATAG+CGG | - | chr3.4:41277168-41277187 | None:intergenic | 35.0% |
| !! | TTTAGCTCACTTCCTTTTTC+CGG | - | chr3.4:41276033-41276052 | None:intergenic | 35.0% |
| !!! | GATGGCAAAATTTTAACTGG+TGG | + | chr3.4:41275245-41275264 | MS.gene29778:intron | 35.0% |
| !!! | TTTTTTAACGTTCGTGCATC+AGG | + | chr3.4:41276273-41276292 | MS.gene29778:intron | 35.0% |
| !!! | TTTTTTCCATGTTTGTTGGC+AGG | - | chr3.4:41276307-41276326 | None:intergenic | 35.0% |
| AATTCGCCGGAAAAGATTCA+TGG | + | chr3.4:41276107-41276126 | MS.gene29778:intron | 40.0% | |
| ACATGTTGTGATATCCGGTT+CGG | - | chr3.4:41277342-41277361 | None:intergenic | 40.0% | |
| ACGAAACAGAGTTATGGGTA+TGG | + | chr3.4:41275970-41275989 | MS.gene29778:intron | 40.0% | |
| CCCAGCTAATCTTTGCAAAA+GGG | + | chr3.4:41277477-41277496 | MS.gene29778:CDS | 40.0% | |
| CCGTAGTTCTTAATCTTGGT+TGG | - | chr3.4:41277298-41277317 | None:intergenic | 40.0% | |
| CCTAACATGCTGGTATTAAG+GGG | - | chr3.4:41276722-41276741 | None:intergenic | 40.0% | |
| CGGATATCACAACATGTACA+AGG | + | chr3.4:41277345-41277364 | MS.gene29778:CDS | 40.0% | |
| GAAGCTCAAGACAACATACA+AGG | + | chr3.4:41277573-41277592 | MS.gene29778:CDS | 40.0% | |
| GACTTACCAGAACTTGGATT+TGG | - | chr3.4:41274680-41274699 | None:intergenic | 40.0% | |
| GCCTTTAAACCAATGTAGTC+AGG | + | chr3.4:41275578-41275597 | MS.gene29778:intron | 40.0% | |
| GGAAAAAGGAAGTGAGCTAA+AGG | + | chr3.4:41276032-41276051 | MS.gene29778:intron | 40.0% | |
| GGAGGAAGATTTAAGCACAA+AGG | + | chr3.4:41276796-41276815 | MS.gene29778:intron | 40.0% | |
| GTATTTGGTTGAAAACAGGC+CGG | + | chr3.4:41276011-41276030 | MS.gene29778:intron | 40.0% | |
| GTCCTAACATGCTGGTATTA+AGG | - | chr3.4:41276724-41276743 | None:intergenic | 40.0% | |
| GTTCGTAAGAACCCACTTAA+GGG | + | chr3.4:41275664-41275683 | MS.gene29778:intron | 40.0% | |
| GTTGCTCGTAATGGTAAGAT+AGG | + | chr3.4:41275181-41275200 | MS.gene29778:intron | 40.0% | |
| TCCCAGCTAATCTTTGCAAA+AGG | + | chr3.4:41277476-41277495 | MS.gene29778:CDS | 40.0% | |
| ! | ACTTGGCCTTCTGTATTCTT+TGG | + | chr3.4:41276657-41276676 | MS.gene29778:intron | 40.0% |
| ! | GTGTTTAAAGCAAGGTAGTC+AGG | - | chr3.4:41276408-41276427 | None:intergenic | 40.0% |
| ! | GTTCTCAGCCTCAAAGTTTT+AGG | + | chr3.4:41277212-41277231 | MS.gene29778:intron | 40.0% |
| ! | TCCCTTTTGCAAAGATTAGC+TGG | - | chr3.4:41277481-41277500 | None:intergenic | 40.0% |
| ! | TTCTTTGGTACTGAGGTATC+AGG | + | chr3.4:41276672-41276691 | MS.gene29778:intron | 40.0% |
| !! | AACTGTAGAACTTGTTAGGG+AGG | + | chr3.4:41276778-41276797 | MS.gene29778:intron | 40.0% |
| !! | ACGAAACAGAGTAATGGGTA+TGG | + | chr3.4:41275942-41275961 | MS.gene29778:intron | 40.0% |
| !! | CCCTTTTGCAAAGATTAGCT+GGG | - | chr3.4:41277480-41277499 | None:intergenic | 40.0% |
| !! | TAGCCCAAACCAATTTTGAC+AGG | + | chr3.4:41276239-41276258 | MS.gene29778:intron | 40.0% |
| AACGATTCAGAACAAGGTCG+AGG | + | chr3.4:41276325-41276344 | MS.gene29778:intron | 45.0% | |
| AAGACTTGTAGAAGGGCAGA+AGG | + | chr3.4:41275456-41275475 | MS.gene29778:intron | 45.0% | |
| AAGAGCTCTTCCTACTGAGA+AGG | + | chr3.4:41274600-41274619 | MS.gene29778:CDS | 45.0% | |
| ACCAGCATGTTAGGACTAGA+CGG | + | chr3.4:41276728-41276747 | MS.gene29778:intron | 45.0% | |
| ACCTAAACCTAGCACACGAA+CGG | - | chr3.4:41276136-41276155 | None:intergenic | 45.0% | |
| ACGTGGAGAAGACTTGTAGA+AGG | + | chr3.4:41275448-41275467 | MS.gene29778:intron | 45.0% | |
| AGTTCCTACGTAGGTTCGAT+TGG | + | chr3.4:41275605-41275624 | MS.gene29778:intron | 45.0% | |
| ATCGAAGTTTGGACATAGGG+TGG | + | chr3.4:41276931-41276950 | MS.gene29778:intron | 45.0% | |
| CACCATTTAGTGTAGTGTCG+CGG | - | chr3.4:41277375-41277394 | None:intergenic | 45.0% | |
| CCCCTTAATACCAGCATGTT+AGG | + | chr3.4:41276719-41276738 | MS.gene29778:intron | 45.0% | |
| CGTGGAGAAGACTTGTAGAA+GGG | + | chr3.4:41275449-41275468 | MS.gene29778:intron | 45.0% | |
| CTTAAACATCTGCGATCCAG+AGG | - | chr3.4:41276873-41276892 | None:intergenic | 45.0% | |
| CTTGTCAGGAATTCGACTCA+GGG | + | chr3.4:41276544-41276563 | MS.gene29778:intron | 45.0% | |
| GAACTCGTTCCTGACTACAT+TGG | - | chr3.4:41275590-41275609 | None:intergenic | 45.0% | |
| GCTACAACGCTATTGCATAG+AGG | + | chr3.4:41275281-41275300 | MS.gene29778:intron | 45.0% | |
| GGATGTTCATCCTTCTCAGT+AGG | - | chr3.4:41274613-41274632 | None:intergenic | 45.0% | |
| GGTAGGGTCAAAAGATAACC+CGG | - | chr3.4:41276210-41276229 | None:intergenic | 45.0% | |
| GGTTCGTAAGAACCCACTTA+AGG | + | chr3.4:41275663-41275682 | MS.gene29778:intron | 45.0% | |
| GTATGTTGTCTTGAGCTTCC+TGG | - | chr3.4:41277572-41277591 | None:intergenic | 45.0% | |
| GTGTAGGAACGTAAACACGA+GGG | + | chr3.4:41275631-41275650 | MS.gene29778:intron | 45.0% | |
| GTTGAAAACAGGCCGGAAAA+AGG | + | chr3.4:41276018-41276037 | MS.gene29778:intron | 45.0% | |
| TAAACACGAGGGACGTAACA+CGG | + | chr3.4:41275642-41275661 | MS.gene29778:intron | 45.0% | |
| TACCGCGACACTACACTAAA+TGG | + | chr3.4:41277370-41277389 | MS.gene29778:CDS | 45.0% | |
| TATCACCAGTACCAGGTTGT+GGG | + | chr3.4:41274577-41274596 | MS.gene29778:CDS | 45.0% | |
| TCGTGTTTACGTTCCTACAC+CGG | - | chr3.4:41275631-41275650 | None:intergenic | 45.0% | |
| TCTTGTCAGGAATTCGACTC+AGG | + | chr3.4:41276543-41276562 | MS.gene29778:intron | 45.0% | |
| TGGGCCTGTCAAAATTGGTT+TGG | - | chr3.4:41276246-41276265 | None:intergenic | 45.0% | |
| TTGTCTTGAGCTTCCTGGTT+GGG | - | chr3.4:41277567-41277586 | None:intergenic | 45.0% | |
| ! | ACTAAGGTGGTTTGGATACG+TGG | + | chr3.4:41275431-41275450 | MS.gene29778:intron | 45.0% |
| ! | CAAGTTGGGCCTGTCAAAAT+TGG | - | chr3.4:41276251-41276270 | None:intergenic | 45.0% |
| ! | GCAAAGATTAGCTGGGATTG+TGG | - | chr3.4:41277473-41277492 | None:intergenic | 45.0% |
| ! | GGGCCTGTCAAAATTGGTTT+GGG | - | chr3.4:41276245-41276264 | None:intergenic | 45.0% |
| ! | GGTTATCTTTTGACCCTACC+CGG | + | chr3.4:41276210-41276229 | MS.gene29778:intron | 45.0% |
| ! | GTCTTGATGATCTGGATGCA+TGG | - | chr3.4:41277448-41277467 | None:intergenic | 45.0% |
| ! | TTGTGGCAGTCTTGATGATC+TGG | - | chr3.4:41277456-41277475 | None:intergenic | 45.0% |
| !! | AATAGTGGGTATAGCGGTAG+TGG | - | chr3.4:41277162-41277181 | None:intergenic | 45.0% |
| AACAAGGTCGAGGCACGATT+GGG | + | chr3.4:41276335-41276354 | MS.gene29778:intron | 50.0% | |
| ACCGTTCGTGTGCTAGGTTT+AGG | + | chr3.4:41276132-41276151 | MS.gene29778:intron | 50.0% | |
| CTCGTTCCTGCCAACAAACA+TGG | + | chr3.4:41276298-41276317 | MS.gene29778:intron | 50.0% | |
| GGATTTGGCACGCACTTCAT+TGG | - | chr3.4:41274665-41274684 | None:intergenic | 50.0% | |
| GGTGTAGGAACGTAAACACG+AGG | + | chr3.4:41275630-41275649 | MS.gene29778:intron | 50.0% | |
| GGTTAAGAAGAGCAATGGGC+AGG | + | chr3.4:41275036-41275055 | MS.gene29778:CDS | 50.0% | |
| GTTGTCTTGAGCTTCCTGGT+TGG | - | chr3.4:41277568-41277587 | None:intergenic | 50.0% | |
| TAAACCTAGCACACGAACGG+TGG | - | chr3.4:41276133-41276152 | None:intergenic | 50.0% | |
| TCAGGAACGAGTTCCTACGT+AGG | + | chr3.4:41275596-41275615 | MS.gene29778:intron | 50.0% | |
| TCGTGTGCTAGGTTTAGGTG+AGG | + | chr3.4:41276137-41276156 | MS.gene29778:intron | 50.0% | |
| TGAGGGTAGAGAGAGAACGA+CGG | + | chr3.4:41276079-41276098 | MS.gene29778:intron | 50.0% | |
| TGCGTGCCAAATCCAAGTTC+TGG | + | chr3.4:41274671-41274690 | MS.gene29778:CDS | 50.0% | |
| TGGCTTCACGTCATAGAGTC+AGG | + | chr3.4:41277419-41277438 | MS.gene29778:CDS | 50.0% | |
| TGTCTTGAGCTTCCTGGTTG+GGG | - | chr3.4:41277566-41277585 | None:intergenic | 50.0% | |
| TTTGGCACGCACTTCATTGG+TGG | - | chr3.4:41274662-41274681 | None:intergenic | 50.0% | |
| ! | CGGTGGCCATGAATCTTTTC+CGG | - | chr3.4:41276116-41276135 | None:intergenic | 50.0% |
| ! | TCTTTTGACCCTACCCGGTT+CGG | + | chr3.4:41276215-41276234 | MS.gene29778:intron | 50.0% |
| AACGACGGCGAGAAATTCGC+CGG | + | chr3.4:41276094-41276113 | MS.gene29778:intron | 55.0% | |
| AACGGACGATCCTACGTGCT+GGG | + | chr3.4:41276375-41276394 | MS.gene29778:intron | 55.0% | |
| AGAAGATTAGGCCCCCAACC+AGG | + | chr3.4:41277551-41277570 | MS.gene29778:CDS | 55.0% | |
| CCTACGTAGGTTCGATTGGC+CGG | + | chr3.4:41275609-41275628 | MS.gene29778:intron | 55.0% | |
| CTCTTCCCACAACCTGGTAC+TGG | - | chr3.4:41274585-41274604 | None:intergenic | 55.0% | |
| CTTCGATACCAGAGCCGAAC+CGG | + | chr3.4:41277325-41277344 | MS.gene29778:CDS | 55.0% | |
| GAACAAGGTCGAGGCACGAT+TGG | + | chr3.4:41276334-41276353 | MS.gene29778:intron | 55.0% | |
| GAAGAGCTCTTCCCACAACC+TGG | - | chr3.4:41274591-41274610 | None:intergenic | 55.0% | |
| GCAGGTGCTTGCCATCAATG+AGG | + | chr3.4:41275054-41275073 | MS.gene29778:CDS | 55.0% | |
| GCATGTTAGGACTAGACGGC+TGG | + | chr3.4:41276732-41276751 | MS.gene29778:intron | 55.0% | |
| GCCGTCTAGTCCTAACATGC+TGG | - | chr3.4:41276732-41276751 | None:intergenic | 55.0% | |
| GTCTTGAGCTTCCTGGTTGG+GGG | - | chr3.4:41277565-41277584 | None:intergenic | 55.0% | |
| ! | ATTGGGTGTGGGAAGCACGT+AGG | + | chr3.4:41276352-41276371 | MS.gene29778:intron | 55.0% |
| ! | CTTTTGACCCTACCCGGTTC+GGG | + | chr3.4:41276216-41276235 | MS.gene29778:intron | 55.0% |
| ! | GTGTGGGAAGCACGTAGGAA+CGG | + | chr3.4:41276357-41276376 | MS.gene29778:intron | 55.0% |
| ! | TAGGTTCGATTGGCCGGTGT+AGG | + | chr3.4:41275615-41275634 | MS.gene29778:intron | 55.0% |
| !! | TGTGATATCCGGTTCGGCTC+TGG | - | chr3.4:41277336-41277355 | None:intergenic | 55.0% |
| !! | TTGGTTTGGGCTACCCGAAC+CGG | - | chr3.4:41276232-41276251 | None:intergenic | 55.0% |
| ATGGCCACCGTTCGTGTGCT+AGG | + | chr3.4:41276126-41276145 | MS.gene29778:intron | 60.0% | |
| CCGGCCAATCGAACCTACGT+AGG | - | chr3.4:41275612-41275631 | None:intergenic | 60.0% | |
| GAACGGACGATCCTACGTGC+TGG | + | chr3.4:41276374-41276393 | MS.gene29778:intron | 60.0% | |
| GTCGAGGCACGATTGGGTGT+GGG | + | chr3.4:41276341-41276360 | MS.gene29778:intron | 60.0% | |
| ! | TGGTTTGGGCTACCCGAACC+GGG | - | chr3.4:41276231-41276250 | None:intergenic | 60.0% |
| AGGCACGAGTCCCAGCACGT+AGG | - | chr3.4:41276388-41276407 | None:intergenic | 65.0% | |
| GGTCGAGGCACGATTGGGTG+TGG | + | chr3.4:41276340-41276359 | MS.gene29778:intron | 65.0% | |
| TGGGCTACCCGAACCGGGTA+GGG | - | chr3.4:41276226-41276245 | None:intergenic | 65.0% | |
| TTGGGCTACCCGAACCGGGT+AGG | - | chr3.4:41276227-41276246 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 41274577 | 41277621 | 41274577 | ID=MS.gene29778 |
| chr3.4 | mRNA | 41274577 | 41277621 | 41274577 | ID=MS.gene29778.t1;Parent=MS.gene29778 |
| chr3.4 | exon | 41274577 | 41274692 | 41274577 | ID=MS.gene29778.t1.exon1;Parent=MS.gene29778.t1 |
| chr3.4 | CDS | 41274577 | 41274692 | 41274577 | ID=cds.MS.gene29778.t1;Parent=MS.gene29778.t1 |
| chr3.4 | exon | 41275012 | 41275075 | 41275012 | ID=MS.gene29778.t1.exon2;Parent=MS.gene29778.t1 |
| chr3.4 | CDS | 41275012 | 41275075 | 41275012 | ID=cds.MS.gene29778.t1;Parent=MS.gene29778.t1 |
| chr3.4 | exon | 41277280 | 41277621 | 41277280 | ID=MS.gene29778.t1.exon3;Parent=MS.gene29778.t1 |
| chr3.4 | CDS | 41277280 | 41277621 | 41277280 | ID=cds.MS.gene29778.t1;Parent=MS.gene29778.t1 |
| Gene Sequence |
| Protein sequence |
