Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45549.t1 | XP_003597433.2 | 100 | 180 | 0 | 0 | 34 | 213 | 15 | 194 | 8.60E-99 | 369.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45549.t1 | Q9ATF5 | 89.9 | 178 | 18 | 0 | 36 | 213 | 1 | 178 | 1.4e-89 | 330.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45549.t1 | A0A396JFT6 | 100.0 | 180 | 0 | 0 | 34 | 213 | 15 | 194 | 6.2e-99 | 369.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene017080 | MS.gene45549 | PPI |
MS.gene45549 | MS.gene92155 | PPI |
MS.gene69509 | MS.gene45549 | PPI |
MS.gene45549 | MS.gene073967 | PPI |
MS.gene017078 | MS.gene45549 | PPI |
MS.gene45549 | MS.gene48048 | PPI |
MS.gene038296 | MS.gene45549 | PPI |
MS.gene45549 | MS.gene08259 | PPI |
MS.gene038298 | MS.gene45549 | PPI |
MS.gene09188 | MS.gene45549 | PPI |
MS.gene45549 | MS.gene057092 | PPI |
MS.gene45549 | MS.gene78387 | PPI |
MS.gene09187 | MS.gene45549 | PPI |
MS.gene45549 | MS.gene017080 | PPI |
MS.gene45549 | MS.gene29778 | PPI |
MS.gene48046 | MS.gene45549 | PPI |
MS.gene039012 | MS.gene45549 | PPI |
MS.gene023381 | MS.gene45549 | PPI |
MS.gene45549 | MS.gene09046 | PPI |
MS.gene019193 | MS.gene45549 | PPI |
MS.gene45549 | MS.gene31095 | PPI |
MS.gene08260 | MS.gene45549 | PPI |
MS.gene45549 | MS.gene052057 | PPI |
MS.gene45549 | MS.gene22178 | PPI |
MS.gene77617 | MS.gene45549 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45549.t1 | MTR_5g091135 | 100.000 | 178 | 0 | 0 | 36 | 213 | 1 | 178 | 9.67e-133 | 370 |
MS.gene45549.t1 | MTR_5g091120 | 100.000 | 178 | 0 | 0 | 36 | 213 | 1 | 178 | 9.67e-133 | 370 |
MS.gene45549.t1 | MTR_2g098000 | 100.000 | 178 | 0 | 0 | 36 | 213 | 1 | 178 | 9.67e-133 | 370 |
MS.gene45549.t1 | MTR_3g046320 | 94.382 | 178 | 10 | 0 | 36 | 213 | 1 | 178 | 7.74e-125 | 350 |
MS.gene45549.t1 | MTR_3g046320 | 95.402 | 174 | 8 | 0 | 40 | 213 | 3 | 176 | 9.29e-124 | 347 |
MS.gene45549.t1 | MTR_2g019720 | 62.353 | 85 | 32 | 0 | 127 | 211 | 1 | 85 | 2.18e-33 | 116 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45549.t1 | AT2G34480 | 82.828 | 198 | 33 | 1 | 17 | 213 | 20 | 217 | 9.58e-121 | 341 |
MS.gene45549.t1 | AT2G34480 | 90.230 | 174 | 17 | 0 | 40 | 213 | 5 | 178 | 1.01e-118 | 335 |
MS.gene45549.t1 | AT1G29965 | 87.079 | 178 | 23 | 0 | 36 | 213 | 1 | 178 | 4.35e-117 | 331 |
MS.gene45549.t1 | AT3G14600 | 87.079 | 178 | 23 | 0 | 36 | 213 | 1 | 178 | 1.27e-116 | 329 |
MS.gene45549.t1 | AT1G29970 | 89.017 | 173 | 19 | 0 | 41 | 213 | 140 | 312 | 2.63e-114 | 328 |
Find 56 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACCAAGGGGAACTTGATTT+TGG | 0.160265 | 2.1:+6227457 | None:intergenic |
AGATTAAGAACTATGGAATT+TGG | 0.243479 | 2.1:-6227679 | MS.gene45549:CDS |
GAAAAGTAATGGACAAGTTT+TGG | 0.246012 | 2.1:-6228390 | MS.gene45549:CDS |
GTTGGGCTTCTTAGCTTTGT+AGG | 0.272211 | 2.1:+6227394 | None:intergenic |
ACTACAATCAGCTCGGAAAA+TGG | 0.314844 | 2.1:-6228763 | MS.gene45549:CDS |
ACGAAATGGCATCTCGTCAT+AGG | 0.320455 | 2.1:-6227568 | MS.gene45549:CDS |
AAAAGGTCCACCATTGATTA+GGG | 0.340282 | 2.1:-6228841 | MS.gene45549:CDS |
AGATTTATCGCATGAAGCTT+TGG | 0.341025 | 2.1:-6228579 | MS.gene45549:CDS |
CCTACCAAGATTAAGAACTA+TGG | 0.366976 | 2.1:-6227686 | MS.gene45549:CDS |
GATTTATCGCATGAAGCTTT+GGG | 0.367321 | 2.1:-6228578 | MS.gene45549:CDS |
AACTTACCAGAACTTGGATT+TGG | 0.367421 | 2.1:+6228537 | None:intergenic |
TCGAACTCAATGGGTCAAAA+AGG | 0.370780 | 2.1:-6228858 | None:intergenic |
AAGCTTCATGCGATAAATCT+TGG | 0.383045 | 2.1:+6228582 | None:intergenic |
CTTGTACATATTGTGATAAC+CGG | 0.391731 | 2.1:+6227637 | None:intergenic |
CCTTGGTGTACAAGAAGATT+AGG | 0.391832 | 2.1:-6227442 | MS.gene45549:CDS |
TCCCAGCTAATCTGTGCAAA+AGG | 0.391912 | 2.1:-6227505 | MS.gene45549:CDS |
ATTCACTGAATCACATAAAC+AGG | 0.401523 | 2.1:+6227372 | None:intergenic |
AATTCCATAGTTCTTAATCT+TGG | 0.403701 | 2.1:+6227682 | None:intergenic |
TGGTGGCAGTCTTAATGATT+TGG | 0.405998 | 2.1:+6227528 | None:intergenic |
TACCGTGATACTACTCTAAA+CGG | 0.448863 | 2.1:-6227611 | MS.gene45549:CDS |
ATAAGGAACTTACCAGAACT+TGG | 0.449276 | 2.1:+6228531 | None:intergenic |
TTCGTGCCAAATCCAAGTTC+TGG | 0.468779 | 2.1:-6228543 | MS.gene45549:intron |
AGCTTCATGCGATAAATCTT+GGG | 0.476384 | 2.1:+6228583 | None:intergenic |
TAAAATAAAACCCTAATCAA+TGG | 0.482054 | 2.1:+6228831 | None:intergenic |
CTGAATCACATAAACAGGTT+GGG | 0.486125 | 2.1:+6227377 | None:intergenic |
CTCTTCCGACAACCTGGTAC+TGG | 0.487827 | 2.1:+6228632 | None:intergenic |
TTTCTTGAGGAAGTTGAAGA+AGG | 0.490067 | 2.1:-6228417 | MS.gene45549:CDS |
TGGCATCTCGTCATAGGGTC+AGG | 0.499078 | 2.1:-6227562 | MS.gene45549:CDS |
AGAAGATTAGGCCTCCTACT+AGG | 0.511127 | 2.1:-6227430 | MS.gene45549:CDS |
TCCACAGTTTCACCAGTACC+AGG | 0.511898 | 2.1:-6228644 | MS.gene45549:intron |
AAGAAGGTTAAGAAAAGTAA+TGG | 0.518066 | 2.1:-6228401 | MS.gene45549:CDS |
TTTGCACAGATTAGCTGGGA+TGG | 0.520373 | 2.1:+6227508 | None:intergenic |
GGAGACAATGTACAACGAAA+TGG | 0.522780 | 2.1:-6227582 | MS.gene45549:CDS |
CCCAGCTAATCTGTGCAAAA+GGG | 0.524734 | 2.1:-6227504 | MS.gene45549:CDS |
AAGAGCACTTCCCACCGAAA+AGG | 0.530461 | 2.1:-6228614 | MS.gene45549:CDS |
CGGTTATCACAATATGTACA+AGG | 0.531139 | 2.1:-6227636 | MS.gene45549:CDS |
TTTCACCAGTACCAGGTTGT+CGG | 0.538716 | 2.1:-6228637 | MS.gene45549:CDS |
CGAAATGGCATCTCGTCATA+GGG | 0.541059 | 2.1:-6227567 | MS.gene45549:CDS |
CCATAGTTCTTAATCTTGGT+AGG | 0.548600 | 2.1:+6227686 | None:intergenic |
TCGGAAAATGGTTAACGCTA+AGG | 0.552440 | 2.1:-6228751 | MS.gene45549:intron |
TTCCAAAATCAAGTTCCCCT+TGG | 0.555039 | 2.1:-6227459 | MS.gene45549:CDS |
GGATTTGGCACGAACCTCGT+TGG | 0.555937 | 2.1:+6228552 | None:intergenic |
ACTGAATCACATAAACAGGT+TGG | 0.563649 | 2.1:+6227376 | None:intergenic |
GTCTTAATGATTTGGATGCA+AGG | 0.568304 | 2.1:+6227536 | None:intergenic |
CTAATCTTCTTGTACACCAA+GGG | 0.571190 | 2.1:+6227443 | None:intergenic |
GAAGTGCTCTTCCGACAACC+TGG | 0.588662 | 2.1:+6228626 | None:intergenic |
TTGCGTTATCAGAGTCGTAC+CGG | 0.589286 | 2.1:-6227656 | MS.gene45549:CDS |
AATAAAACCCTAATCAATGG+TGG | 0.601555 | 2.1:+6228834 | None:intergenic |
GCACAGATTAGCTGGGATGG+TGG | 0.612537 | 2.1:+6227511 | None:intergenic |
ACAGAAAACTACAATCAGCT+CGG | 0.620129 | 2.1:-6228770 | MS.gene45549:CDS |
CCTAATCTTCTTGTACACCA+AGG | 0.642782 | 2.1:+6227442 | None:intergenic |
TACTACTCTAAACGGTGCTG+TGG | 0.650976 | 2.1:-6227603 | MS.gene45549:CDS |
ATTGTTGTAGGTATTTCTTG+AGG | 0.651477 | 2.1:-6228430 | MS.gene45549:intron |
CACCGTTTAGAGTAGTATCA+CGG | 0.660256 | 2.1:+6227609 | None:intergenic |
TAATCTTCTTGTACACCAAG+GGG | 0.679937 | 2.1:+6227444 | None:intergenic |
GAAGCTTTGGGCAACCAACG+AGG | 0.727612 | 2.1:-6228566 | MS.gene45549:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAATTAATAAATAAATA+AGG | + | chr2.1:6227720-6227739 | None:intergenic | 0.0% |
!! | TTAATAATGTTAATTGTTGT+AGG | - | chr2.1:6227789-6227808 | MS.gene45549:intron | 15.0% |
!! | AAAGATCTGCAATAAAAAAA+AGG | + | chr2.1:6228516-6228535 | None:intergenic | 20.0% |
!! | AAATCATTGAAATGTCATAT+CGG | + | chr2.1:6228021-6228040 | None:intergenic | 20.0% |
!! | ATTCAAATTTGATACAACTT+AGG | - | chr2.1:6227904-6227923 | MS.gene45549:intron | 20.0% |
!! | TAAAATAAAACCCTAATCAA+TGG | + | chr2.1:6227403-6227422 | None:intergenic | 20.0% |
!! | TGTATCAAATTTGAATTAAG+AGG | + | chr2.1:6227900-6227919 | None:intergenic | 20.0% |
!! | TTGTTGTAACATATCTATTA+AGG | - | chr2.1:6228225-6228244 | MS.gene45549:intron | 20.0% |
! | AAGAAGGTTAAGAAAAGTAA+TGG | - | chr2.1:6227830-6227849 | MS.gene45549:intron | 25.0% |
! | AATAGATATGTTACAACAAC+AGG | + | chr2.1:6228224-6228243 | None:intergenic | 25.0% |
! | AATTCCATAGTTCTTAATCT+TGG | + | chr2.1:6228552-6228571 | None:intergenic | 25.0% |
! | AGATTAAGAACTATGGAATT+TGG | - | chr2.1:6228552-6228571 | MS.gene45549:CDS | 25.0% |
! | CAATTATTCTAGGCAAAATA+AGG | - | chr2.1:6228387-6228406 | MS.gene45549:CDS | 25.0% |
! | CGTATTGTTTCAATTATTCT+AGG | - | chr2.1:6228377-6228396 | MS.gene45549:intron | 25.0% |
! | TTATGTCAAAATCCAAACAT+AGG | - | chr2.1:6228195-6228214 | MS.gene45549:intron | 25.0% |
AATAAAACCCTAATCAATGG+TGG | + | chr2.1:6227400-6227419 | None:intergenic | 30.0% | |
AATTGTGGTGAAAGAATATG+TGG | - | chr2.1:6228412-6228431 | MS.gene45549:CDS | 30.0% | |
ATAACAACTAAAGCAAACAC+AGG | + | chr2.1:6228449-6228468 | None:intergenic | 30.0% | |
ATTGTTGTAGGTATTTCTTG+AGG | - | chr2.1:6227801-6227820 | MS.gene45549:intron | 30.0% | |
CTTGTACATATTGTGATAAC+CGG | + | chr2.1:6228597-6228616 | None:intergenic | 30.0% | |
TAACAACTAAAGCAAACACA+GGG | + | chr2.1:6228448-6228467 | None:intergenic | 30.0% | |
TTTGTGTGTGAATCTTAACA+CGG | - | chr2.1:6227549-6227568 | MS.gene45549:CDS | 30.0% | |
!!! | GAAAAGTAATGGACAAGTTT+TGG | - | chr2.1:6227841-6227860 | MS.gene45549:intron | 30.0% |
!!! | TAGCTTTGTAGGTTGTTTTT+AGG | + | chr2.1:6228829-6228848 | None:intergenic | 30.0% |
AACAACAGGTTACCTATGTT+TGG | + | chr2.1:6228210-6228229 | None:intergenic | 35.0% | |
AACTTACCAGAACTTGGATT+TGG | + | chr2.1:6227697-6227716 | None:intergenic | 35.0% | |
AAGCTTCATGCGATAAATCT+TGG | + | chr2.1:6227652-6227671 | None:intergenic | 35.0% | |
ACAGAAAACTACAATCAGCT+CGG | - | chr2.1:6227461-6227480 | MS.gene45549:CDS | 35.0% | |
ACAGCTTACACTCAAATGTT+TGG | + | chr2.1:6228159-6228178 | None:intergenic | 35.0% | |
AGATTTATCGCATGAAGCTT+TGG | - | chr2.1:6227652-6227671 | MS.gene45549:CDS | 35.0% | |
AGCTTCATGCGATAAATCTT+GGG | + | chr2.1:6227651-6227670 | None:intergenic | 35.0% | |
AGGCAAAATAAGGCTAATTG+TGG | - | chr2.1:6228397-6228416 | MS.gene45549:CDS | 35.0% | |
ATAACGAACAAGTGCTTCTA+TGG | + | chr2.1:6227976-6227995 | None:intergenic | 35.0% | |
ATAAGGAACTTACCAGAACT+TGG | + | chr2.1:6227703-6227722 | None:intergenic | 35.0% | |
CCATAGTTCTTAATCTTGGT+AGG | + | chr2.1:6228548-6228567 | None:intergenic | 35.0% | |
CCTACCAAGATTAAGAACTA+TGG | - | chr2.1:6228545-6228564 | MS.gene45549:CDS | 35.0% | |
CGGTTATCACAATATGTACA+AGG | - | chr2.1:6228595-6228614 | MS.gene45549:CDS | 35.0% | |
CTAATCTTCTTGTACACCAA+GGG | + | chr2.1:6228791-6228810 | None:intergenic | 35.0% | |
GATTTATCGCATGAAGCTTT+GGG | - | chr2.1:6227653-6227672 | MS.gene45549:CDS | 35.0% | |
TAACGAACAAGTGCTTCTAT+GGG | + | chr2.1:6227975-6227994 | None:intergenic | 35.0% | |
TAATCTTCTTGTACACCAAG+GGG | + | chr2.1:6228790-6228809 | None:intergenic | 35.0% | |
TACCGTGATACTACTCTAAA+CGG | - | chr2.1:6228620-6228639 | MS.gene45549:CDS | 35.0% | |
TCAGCTATGAAATTAGTCAC+TGG | + | chr2.1:6228327-6228346 | None:intergenic | 35.0% | |
TCCAAAAAGACTGCAATTGA+AGG | + | chr2.1:6228476-6228495 | None:intergenic | 35.0% | |
TGTCTTGAGTATTTCCTAGA+GGG | - | chr2.1:6228288-6228307 | MS.gene45549:intron | 35.0% | |
TTTCTTGAGGAAGTTGAAGA+AGG | - | chr2.1:6227814-6227833 | MS.gene45549:intron | 35.0% | |
! | AAAAAGGTCCACCATTGATT+AGG | - | chr2.1:6227389-6227408 | MS.gene45549:CDS | 35.0% |
! | AAAAGGTCCACCATTGATTA+GGG | - | chr2.1:6227390-6227409 | MS.gene45549:CDS | 35.0% |
! | AAAGTACTATGGTTGGGAAA+GGG | - | chr2.1:6228067-6228086 | MS.gene45549:intron | 35.0% |
! | ACCTTCAATTGCAGTCTTTT+TGG | - | chr2.1:6228472-6228491 | MS.gene45549:intron | 35.0% |
! | ATTGCAGTCTTTTTGGACAT+AGG | - | chr2.1:6228479-6228498 | MS.gene45549:intron | 35.0% |
! | GTCTTAATGATTTGGATGCA+AGG | + | chr2.1:6228698-6228717 | None:intergenic | 35.0% |
! | TTGCAGTCTTTTTGGACATA+GGG | - | chr2.1:6228480-6228499 | MS.gene45549:intron | 35.0% |
! | TTTTTGGACATAGGGGTTTA+TGG | - | chr2.1:6228488-6228507 | MS.gene45549:intron | 35.0% |
!! | AGCATTCCATGAAAGTACTA+TGG | - | chr2.1:6228056-6228075 | MS.gene45549:intron | 35.0% |
!! | TCCATGAAAGTACTATGGTT+GGG | - | chr2.1:6228061-6228080 | MS.gene45549:intron | 35.0% |
!! | TTCCATGAAAGTACTATGGT+TGG | - | chr2.1:6228060-6228079 | MS.gene45549:intron | 35.0% |
!!! | ACAAGTTTTGGCTATCAATG+AGG | - | chr2.1:6227853-6227872 | MS.gene45549:intron | 35.0% |
!!! | GGAACTTGATTTTGGAATTG+TGG | + | chr2.1:6228769-6228788 | None:intergenic | 35.0% |
!!! | GTTCTGTTTTGATTAGTGCT+GGG | - | chr2.1:6228093-6228112 | MS.gene45549:intron | 35.0% |
!!! | TGTTCTGTTTTGATTAGTGC+TGG | - | chr2.1:6228092-6228111 | MS.gene45549:intron | 35.0% |
ACTACAATCAGCTCGGAAAA+TGG | - | chr2.1:6227468-6227487 | MS.gene45549:CDS | 40.0% | |
CCTAATCTTCTTGTACACCA+AGG | + | chr2.1:6228792-6228811 | None:intergenic | 40.0% | |
CTGTCTTGAGTATTTCCTAG+AGG | - | chr2.1:6228287-6228306 | MS.gene45549:intron | 40.0% | |
GATACAACTTAGGCTGTGTT+TGG | - | chr2.1:6227914-6227933 | MS.gene45549:intron | 40.0% | |
GGAGACAATGTACAACGAAA+TGG | - | chr2.1:6228649-6228668 | MS.gene45549:intron | 40.0% | |
GGTGAAAGAATATGTGGAGT+AGG | - | chr2.1:6228418-6228437 | MS.gene45549:CDS | 40.0% | |
GTTTCATGCTAAAACCCTCT+AGG | + | chr2.1:6228305-6228324 | None:intergenic | 40.0% | |
TCCCAACCATAGTACTTTCA+TGG | + | chr2.1:6228065-6228084 | None:intergenic | 40.0% | |
TCGGAAAATGGTTAACGCTA+AGG | - | chr2.1:6227480-6227499 | MS.gene45549:CDS | 40.0% | |
TGGTGGCAGTCTTAATGATT+TGG | + | chr2.1:6228706-6228725 | None:intergenic | 40.0% | |
TTCCAAAATCAAGTTCCCCT+TGG | - | chr2.1:6228772-6228791 | MS.gene45549:CDS | 40.0% | |
! | CACCGTTTAGAGTAGTATCA+CGG | + | chr2.1:6228625-6228644 | None:intergenic | 40.0% |
! | CCTTGGTGTACAAGAAGATT+AGG | - | chr2.1:6228789-6228808 | MS.gene45549:CDS | 40.0% |
! | CTCTAGGAAATACTCAAGAC+AGG | + | chr2.1:6228289-6228308 | None:intergenic | 40.0% |
! | CTTGGGATGTTCATCCTTTT+CGG | + | chr2.1:6227634-6227653 | None:intergenic | 40.0% |
! | TGCAGTCTTTTTGGACATAG+GGG | - | chr2.1:6228481-6228500 | MS.gene45549:intron | 40.0% |
!! | GAAAGTACTATGGTTGGGAA+AGG | - | chr2.1:6228066-6228085 | MS.gene45549:intron | 40.0% |
!!! | GTTGTTTTTAGGCTCCTAGT+AGG | + | chr2.1:6228818-6228837 | None:intergenic | 40.0% |
ACGAAATGGCATCTCGTCAT+AGG | - | chr2.1:6228663-6228682 | MS.gene45549:intron | 45.0% | |
AGAAGATTAGGCCTCCTACT+AGG | - | chr2.1:6228801-6228820 | MS.gene45549:CDS | 45.0% | |
CCCAGCTAATCTGTGCAAAA+GGG | - | chr2.1:6228727-6228746 | MS.gene45549:intron | 45.0% | |
CGAAATGGCATCTCGTCATA+GGG | - | chr2.1:6228664-6228683 | MS.gene45549:intron | 45.0% | |
GGCAAACAGTGACAGTTTGA+AGG | + | chr2.1:6228268-6228287 | None:intergenic | 45.0% | |
TCCCAGCTAATCTGTGCAAA+AGG | - | chr2.1:6228726-6228745 | MS.gene45549:intron | 45.0% | |
TTCGTGCCAAATCCAAGTTC+TGG | - | chr2.1:6227688-6227707 | MS.gene45549:CDS | 45.0% | |
TTGCGTTATCAGAGTCGTAC+CGG | - | chr2.1:6228575-6228594 | MS.gene45549:CDS | 45.0% | |
TTTCACCAGTACCAGGTTGT+CGG | - | chr2.1:6227594-6227613 | MS.gene45549:CDS | 45.0% | |
! | CACCAAGGGGAACTTGATTT+TGG | + | chr2.1:6228777-6228796 | None:intergenic | 45.0% |
! | GGATGTTCATCCTTTTCGGT+GGG | + | chr2.1:6227630-6227649 | None:intergenic | 45.0% |
! | TACTACTCTAAACGGTGCTG+TGG | - | chr2.1:6228628-6228647 | MS.gene45549:CDS | 45.0% |
! | TCCCTTTTGCACAGATTAGC+TGG | + | chr2.1:6228731-6228750 | None:intergenic | 45.0% |
! | TTTGCACAGATTAGCTGGGA+TGG | + | chr2.1:6228726-6228745 | None:intergenic | 45.0% |
!! | CCCTTTTGCACAGATTAGCT+GGG | + | chr2.1:6228730-6228749 | None:intergenic | 45.0% |
!! | GTTGGGCTTCTTAGCTTTGT+AGG | + | chr2.1:6228840-6228859 | None:intergenic | 45.0% |
!! | GTTTTTAGGCTCCTAGTAGG+AGG | + | chr2.1:6228815-6228834 | None:intergenic | 45.0% |
TCCACAGTTTCACCAGTACC+AGG | - | chr2.1:6227587-6227606 | MS.gene45549:CDS | 50.0% | |
! | GGGATGTTCATCCTTTTCGG+TGG | + | chr2.1:6227631-6227650 | None:intergenic | 50.0% |
!! | AAGAGCACTTCCCACCGAAA+AGG | - | chr2.1:6227617-6227636 | MS.gene45549:CDS | 50.0% |
!! | ACCTGGTACTGGTGAAACTG+TGG | + | chr2.1:6227591-6227610 | None:intergenic | 50.0% |
CTCTTCCGACAACCTGGTAC+TGG | + | chr2.1:6227602-6227621 | None:intergenic | 55.0% | |
GGATTTGGCACGAACCTCGT+TGG | + | chr2.1:6227682-6227701 | None:intergenic | 55.0% | |
TGGCATCTCGTCATAGGGTC+AGG | - | chr2.1:6228669-6228688 | MS.gene45549:intron | 55.0% | |
! | GAAGTGCTCTTCCGACAACC+TGG | + | chr2.1:6227608-6227627 | None:intergenic | 55.0% |
! | GCACAGATTAGCTGGGATGG+TGG | + | chr2.1:6228723-6228742 | None:intergenic | 55.0% |
!! | GAAGCTTTGGGCAACCAACG+AGG | - | chr2.1:6227665-6227684 | MS.gene45549:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 6227382 | 6228871 | 6227382 | ID=MS.gene45549 |
chr2.1 | mRNA | 6227382 | 6228871 | 6227382 | ID=MS.gene45549.t1;Parent=MS.gene45549 |
chr2.1 | exon | 6228752 | 6228871 | 6228752 | ID=MS.gene45549.t1.exon1;Parent=MS.gene45549.t1 |
chr2.1 | CDS | 6228752 | 6228871 | 6228752 | ID=cds.MS.gene45549.t1;Parent=MS.gene45549.t1 |
chr2.1 | exon | 6228544 | 6228659 | 6228544 | ID=MS.gene45549.t1.exon2;Parent=MS.gene45549.t1 |
chr2.1 | CDS | 6228544 | 6228659 | 6228544 | ID=cds.MS.gene45549.t1;Parent=MS.gene45549.t1 |
chr2.1 | exon | 6228379 | 6228442 | 6228379 | ID=MS.gene45549.t1.exon3;Parent=MS.gene45549.t1 |
chr2.1 | CDS | 6228379 | 6228442 | 6228379 | ID=cds.MS.gene45549.t1;Parent=MS.gene45549.t1 |
chr2.1 | exon | 6227382 | 6227723 | 6227382 | ID=MS.gene45549.t1.exon4;Parent=MS.gene45549.t1 |
chr2.1 | CDS | 6227382 | 6227723 | 6227382 | ID=cds.MS.gene45549.t1;Parent=MS.gene45549.t1 |
Gene Sequence |
Protein sequence |