Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018731.t1 | XP_013449859.1 | 96.4 | 1012 | 29 | 2 | 1 | 1011 | 1 | 1006 | 0.00E+00 | 1935.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018731.t1 | Q9ZP54 | 68.9 | 1016 | 278 | 10 | 1 | 1011 | 1 | 983 | 0.0e+00 | 1342.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018731.t1 | A0A072U2F3 | 96.4 | 1012 | 29 | 2 | 1 | 1011 | 1 | 1006 | 0.0e+00 | 1935.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018731 | MS.gene047613 | PPI |
| MS.gene043818 | MS.gene018731 | PPI |
| MS.gene024860 | MS.gene018731 | PPI |
| MS.gene08109 | MS.gene018731 | PPI |
| MS.gene018731 | MS.gene015168 | PPI |
| MS.gene071364 | MS.gene018731 | PPI |
| MS.gene04079 | MS.gene018731 | PPI |
| MS.gene018731 | MS.gene001031 | PPI |
| MS.gene018731 | MS.gene78972 | PPI |
| MS.gene018731 | MS.gene067030 | PPI |
| MS.gene21834 | MS.gene018731 | PPI |
| MS.gene018731 | MS.gene75579 | PPI |
| MS.gene77160 | MS.gene018731 | PPI |
| MS.gene018731 | MS.gene043821 | PPI |
| MS.gene045239 | MS.gene018731 | PPI |
| MS.gene018731 | MS.gene95803 | PPI |
| MS.gene81099 | MS.gene018731 | PPI |
| MS.gene071366 | MS.gene018731 | PPI |
| MS.gene018731 | MS.gene77163 | PPI |
| MS.gene018731 | MS.gene34372 | PPI |
| MS.gene04418 | MS.gene018731 | PPI |
| MS.gene018731 | MS.gene041066 | PPI |
| MS.gene018731 | MS.gene49473 | PPI |
| MS.gene018731 | MS.gene010334 | PPI |
| MS.gene070946 | MS.gene018731 | PPI |
| MS.gene05640 | MS.gene018731 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018731.t1 | MTR_7g096520 | 97.826 | 1012 | 15 | 2 | 1 | 1011 | 1 | 1006 | 0.0 | 2053 |
| MS.gene018731.t1 | MTR_1g088375 | 39.175 | 485 | 264 | 11 | 542 | 1007 | 127 | 599 | 7.69e-110 | 355 |
| MS.gene018731.t1 | MTR_4g053530 | 30.477 | 817 | 482 | 21 | 242 | 1010 | 28 | 806 | 8.66e-110 | 360 |
| MS.gene018731.t1 | MTR_1g088400 | 42.188 | 256 | 139 | 4 | 727 | 974 | 22 | 276 | 2.10e-61 | 211 |
| MS.gene018731.t1 | MTR_1g088400 | 45.575 | 226 | 120 | 3 | 751 | 974 | 5 | 229 | 3.38e-61 | 209 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018731.t1 | AT2G31320 | 68.209 | 1016 | 285 | 10 | 1 | 1011 | 1 | 983 | 0.0 | 1397 |
| MS.gene018731.t1 | AT4G02390 | 39.754 | 488 | 264 | 10 | 542 | 1010 | 89 | 565 | 4.01e-107 | 345 |
| MS.gene018731.t1 | AT4G02390 | 39.754 | 488 | 264 | 10 | 542 | 1010 | 160 | 636 | 1.07e-106 | 346 |
| MS.gene018731.t1 | AT4G02390 | 39.754 | 488 | 264 | 10 | 542 | 1010 | 158 | 634 | 1.09e-106 | 346 |
| MS.gene018731.t1 | AT5G22470 | 30.424 | 825 | 478 | 23 | 234 | 1010 | 29 | 805 | 8.44e-101 | 335 |
| MS.gene018731.t1 | AT3G14890 | 28.782 | 271 | 176 | 8 | 9 | 266 | 49 | 315 | 6.68e-12 | 70.1 |
| MS.gene018731.t1 | AT3G14890 | 31.658 | 199 | 122 | 6 | 9 | 197 | 49 | 243 | 9.12e-11 | 66.6 |
Find 253 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTCATCCACATATTATT+AGG | 0.105501 | 7.1:-11200921 | MS.gene018731:CDS |
| GGGCATGAGGCCATCGAATT+TGG | 0.181131 | 7.1:+11206363 | None:intergenic |
| TCATGATGCTTCTGGCTTAC+AGG | 0.215456 | 7.1:-11202701 | MS.gene018731:CDS |
| CGACTATTCTTTGAGAAAAC+TGG | 0.242070 | 7.1:-11201617 | MS.gene018731:CDS |
| TAGCCAGTTGCTGGGGCTTC+AGG | 0.259348 | 7.1:+11199186 | None:intergenic |
| CAGTGGTTCAAATCTCAAAA+AGG | 0.259566 | 7.1:-11203450 | MS.gene018731:CDS |
| TGTTCTCTACTTCAGGTTCT+AGG | 0.267279 | 7.1:-11199257 | MS.gene018731:intron |
| GCTTCTGGCTTACAGGATTC+TGG | 0.269734 | 7.1:-11202694 | MS.gene018731:CDS |
| ATCTTGATCAATTCTATTAA+TGG | 0.278783 | 7.1:+11201353 | None:intergenic |
| GGTTGCAATGGGACTCTTGC+AGG | 0.282998 | 7.1:+11206420 | None:intergenic |
| GATTTGAGAGTTGCCATCTC+TGG | 0.283526 | 7.1:-11203324 | MS.gene018731:CDS |
| CATTCATCCACATATTATTA+GGG | 0.284288 | 7.1:-11200920 | MS.gene018731:CDS |
| TACTGATTATCTGTTTCCTT+TGG | 0.287387 | 7.1:+11203550 | None:intergenic |
| TATCTTCTTCAATTATTTGC+AGG | 0.292751 | 7.1:+11201750 | None:intergenic |
| CAAATAATTGAAGAAGATAA+TGG | 0.297851 | 7.1:-11201746 | MS.gene018731:CDS |
| AATAGTCAGAGAGGACTATT+TGG | 0.300812 | 7.1:-11202833 | MS.gene018731:CDS |
| AGTGCTGTTCATGATGCTTC+TGG | 0.309886 | 7.1:-11202709 | MS.gene018731:CDS |
| ACTGATTATCTGTTTCCTTT+GGG | 0.313751 | 7.1:+11203551 | None:intergenic |
| CAGTTTCCCAAGTGGCATTT+CGG | 0.317336 | 7.1:+11201205 | None:intergenic |
| CTGGAAACCCTTGGGAGGCC+TGG | 0.325393 | 7.1:-11201598 | MS.gene018731:CDS |
| CACTTCCCTTCAGCACGCTT+TGG | 0.326046 | 7.1:+11203580 | None:intergenic |
| ATTTGTCTACTGGTATTAAC+AGG | 0.328166 | 7.1:-11202618 | MS.gene018731:intron |
| ACTTTGCATATTCAGATTCC+AGG | 0.332395 | 7.1:+11198614 | None:intergenic |
| TTGCCAACTTTGTCTCTGTA+AGG | 0.340991 | 7.1:+11200289 | None:intergenic |
| AGCCCCAGCAACTGGCTATA+TGG | 0.348497 | 7.1:-11199181 | MS.gene018731:intron |
| GAGCCCAGAGATCTTTGCTC+TGG | 0.349228 | 7.1:+11204259 | None:intergenic |
| ACTTTGCCCCTTGACTTTGA+TGG | 0.354008 | 7.1:+11202729 | None:intergenic |
| CCTCCTGAAGCCCCAGCAAC+TGG | 0.366832 | 7.1:-11199189 | MS.gene018731:CDS |
| AGCCTGATGGTCAAGGTGCC+AGG | 0.368170 | 7.1:-11204717 | MS.gene018731:CDS |
| GGACTATTTGGTTGACTGTA+TGG | 0.370013 | 7.1:-11202821 | MS.gene018731:CDS |
| TGGTCAAGGTGCCAGGGGTT+TGG | 0.371181 | 7.1:-11204710 | MS.gene018731:CDS |
| CTTCCAAAGGTGGCACTAAA+CGG | 0.382184 | 7.1:-11204416 | MS.gene018731:CDS |
| TTCCAAAGGTGGCACTAAAC+GGG | 0.385197 | 7.1:-11204415 | MS.gene018731:CDS |
| TGTCGAAATCTGATGCAATC+AGG | 0.391979 | 7.1:-11201649 | MS.gene018731:CDS |
| AAGGTGCCAGGGGTTTGGCT+TGG | 0.393692 | 7.1:-11204705 | MS.gene018731:CDS |
| GGTGGTCAGTGGAGCGCTTA+AGG | 0.394139 | 7.1:-11202985 | MS.gene018731:CDS |
| GCCAAAGTTTCACTGTTTGA+TGG | 0.394353 | 7.1:+11203348 | None:intergenic |
| ATCAATGGAGTCGTCGTTGT+TGG | 0.395881 | 7.1:+11200598 | None:intergenic |
| ATTTATACAACGGAATCTTC+AGG | 0.397858 | 7.1:+11203297 | None:intergenic |
| AATATGTCTGATTTGTCTAC+TGG | 0.398742 | 7.1:-11202628 | MS.gene018731:CDS |
| ATTGCTACGTGTTTCGCAAA+TGG | 0.400336 | 7.1:-11201718 | MS.gene018731:CDS |
| ATTGTGTTAACATACCCTTT+TGG | 0.408371 | 7.1:+11201168 | None:intergenic |
| AGGCCCAGAGCAAAGATCTC+TGG | 0.408797 | 7.1:-11204263 | MS.gene018731:CDS |
| AGTGCTGATGGAATGATGTT+TGG | 0.410252 | 7.1:-11203715 | MS.gene018731:CDS |
| TTGCTACGTGTTTCGCAAAT+GGG | 0.412307 | 7.1:-11201717 | MS.gene018731:CDS |
| AGATAATCAGTACCTTAAAA+AGG | 0.412335 | 7.1:-11203539 | MS.gene018731:intron |
| CCTAATAATATGTGGATGAA+TGG | 0.413880 | 7.1:+11200921 | None:intergenic |
| CTTAAAAGCATTAGACCAAC+AGG | 0.419926 | 7.1:+11198921 | None:intergenic |
| TAAACTGCAATTCTTGTTGA+AGG | 0.420099 | 7.1:-11197913 | MS.gene018731:CDS |
| TGAAATAGCCTCAAGATTAG+TGG | 0.423165 | 7.1:-11200630 | MS.gene018731:CDS |
| CTTCTTATAATTATCATCAA+TGG | 0.427067 | 7.1:+11200583 | None:intergenic |
| TCCATCCTCATTTCTTGTGA+TGG | 0.429629 | 7.1:+11197883 | None:intergenic |
| AAATAGTCCTCTCTGACTAT+TGG | 0.430169 | 7.1:+11202835 | None:intergenic |
| AAATTATCCACTTCAATTGA+TGG | 0.434056 | 7.1:+11204652 | None:intergenic |
| ATTTGAGAGTTGCCATCTCT+GGG | 0.434588 | 7.1:-11203323 | MS.gene018731:CDS |
| TTCAGCACGCTTTGGTTCGC+AGG | 0.440730 | 7.1:+11203588 | None:intergenic |
| CCCCTGGCACCTTGACCATC+AGG | 0.441143 | 7.1:+11204715 | None:intergenic |
| CGTTGTTCCCTGTGGGAAAC+CGG | 0.449287 | 7.1:-11198578 | MS.gene018731:CDS |
| GAGCAAAAGTAATATCCAAA+AGG | 0.451321 | 7.1:-11201183 | MS.gene018731:CDS |
| ACCTGGGAGATTCTTCCCCT+TGG | 0.453013 | 7.1:-11201552 | MS.gene018731:CDS |
| TCAACTTTGTACATATCAAA+TGG | 0.457516 | 7.1:+11202781 | None:intergenic |
| AGCAGAGATGCGTGAAATGC+TGG | 0.457723 | 7.1:-11204205 | MS.gene018731:CDS |
| TGCTCATTGATGCTAGCAAT+AGG | 0.458324 | 7.1:-11200963 | MS.gene018731:CDS |
| TATTGTCATTTCAGTGCTGA+TGG | 0.458515 | 7.1:-11203727 | MS.gene018731:intron |
| CAAGATTGGAGGGAACAAAC+TGG | 0.458917 | 7.1:-11201678 | MS.gene018731:CDS |
| CACATCTCCCTTGACTTTAG+CGG | 0.462505 | 7.1:+11204359 | None:intergenic |
| TTGAGAAAACTGGAAACCCT+TGG | 0.466084 | 7.1:-11201607 | MS.gene018731:CDS |
| TTCTAGGTTGACGAACTTTG+TGG | 0.466090 | 7.1:-11199241 | MS.gene018731:CDS |
| TGGAAACCCTTGGGAGGCCT+GGG | 0.466277 | 7.1:-11201597 | MS.gene018731:CDS |
| TCTCTCATCTTCTGATCAAT+CGG | 0.467085 | 7.1:-11204614 | MS.gene018731:CDS |
| AAATAATTGAAGAAGATAAT+GGG | 0.467660 | 7.1:-11201745 | MS.gene018731:CDS |
| TTTGCGTACTCTGCTTTCCA+TGG | 0.468447 | 7.1:+11206466 | None:intergenic |
| ACCATCAAACAGTGAAACTT+TGG | 0.468714 | 7.1:-11203349 | MS.gene018731:CDS |
| ATTGAAGTGGATAATTTGCC+TGG | 0.469195 | 7.1:-11204646 | MS.gene018731:CDS |
| AGTCCTTGCTCTCTATGTGA+TGG | 0.470443 | 7.1:-11203685 | MS.gene018731:CDS |
| AAAGCAGAGTACGCAAAATC+AGG | 0.472100 | 7.1:-11206460 | MS.gene018731:CDS |
| CGGAGCTTCTCGGTTGCAAT+GGG | 0.474695 | 7.1:+11206409 | None:intergenic |
| AGGCTATTTCAATATCTTGA+AGG | 0.475473 | 7.1:+11200642 | None:intergenic |
| GCACCATGCTAAGTGTCTCT+TGG | 0.477110 | 7.1:-11204683 | MS.gene018731:CDS |
| GAACTTAGAGTCGCTTCGTT+GGG | 0.480032 | 7.1:-11205957 | MS.gene018731:CDS |
| AGGGAGATGTGTCTGCGAGC+AGG | 0.481221 | 7.1:-11204347 | MS.gene018731:CDS |
| CTCAAGATCACGTGCCGCCC+CGG | 0.481538 | 7.1:+11204296 | None:intergenic |
| GGAGGAATGTACCGGTGCAC+TGG | 0.484725 | 7.1:-11203646 | MS.gene018731:CDS |
| TTTGCCTGCAGTTTGGCAAA+GGG | 0.487008 | 7.1:-11199004 | MS.gene018731:intron |
| GCCGCCTCTAAGTCGAGTGC+TGG | 0.487078 | 7.1:-11205848 | MS.gene018731:CDS |
| TGCCAACTTTGTCTCTGTAA+GGG | 0.487650 | 7.1:+11200290 | None:intergenic |
| GCCAATGGTCAAGATTCAAC+AGG | 0.488288 | 7.1:-11204180 | MS.gene018731:CDS |
| AGAACCATATAGCCAGTTGC+TGG | 0.488876 | 7.1:+11199177 | None:intergenic |
| TCTTTAATGTGGAAACATAC+AGG | 0.491969 | 7.1:-11201328 | MS.gene018731:intron |
| TGAGAAAACTGGAAACCCTT+GGG | 0.492370 | 7.1:-11201606 | MS.gene018731:CDS |
| AGCCCAGAGATCTTTGCTCT+GGG | 0.492857 | 7.1:+11204260 | None:intergenic |
| GCAATGCTGATCCATCAGTC+AGG | 0.495787 | 7.1:-11200993 | MS.gene018731:CDS |
| GGCGGAGGCAATATCCTAGT+TGG | 0.497852 | 7.1:+11203420 | None:intergenic |
| TTTAGTGCCACCTTTGGAAG+AGG | 0.498151 | 7.1:+11204419 | None:intergenic |
| TCCTGTTGAATCTTGACCAT+TGG | 0.499269 | 7.1:+11204179 | None:intergenic |
| TGTGTCTGCGAGCAGGGTAG+CGG | 0.500249 | 7.1:-11204340 | MS.gene018731:CDS |
| AAAGCATTCTACTAAAGGAC+TGG | 0.500575 | 7.1:-11198650 | MS.gene018731:CDS |
| GGCCCAGAGCAAAGATCTCT+GGG | 0.501573 | 7.1:-11204262 | MS.gene018731:CDS |
| ACGGAGCTTCTCGGTTGCAA+TGG | 0.502052 | 7.1:+11206408 | None:intergenic |
| TCCACATATTATTAGGGATG+AGG | 0.505116 | 7.1:-11200914 | MS.gene018731:CDS |
| AGCAAAAGTAATATCCAAAA+GGG | 0.506378 | 7.1:-11201182 | MS.gene018731:intron |
| CAAGGAAAGCATTCTACTAA+AGG | 0.506710 | 7.1:-11198655 | MS.gene018731:CDS |
| GTTTCGCAAACTTCACGTGC+TGG | 0.507650 | 7.1:-11205800 | MS.gene018731:CDS |
| TCTTCACTGTCATGAGGAAG+TGG | 0.510609 | 7.1:+11200542 | None:intergenic |
| ACCCTCAAAACGCGAAGCCA+TGG | 0.510955 | 7.1:-11206483 | MS.gene018731:CDS |
| AAGAAATAGTACAATTTCCA+AGG | 0.514163 | 7.1:+11201535 | None:intergenic |
| TCAGCAGAAGTCCTTGATGA+TGG | 0.516997 | 7.1:+11203399 | None:intergenic |
| AAGACTATTCAGAAGCAACC+TGG | 0.518065 | 7.1:-11201569 | MS.gene018731:CDS |
| ATCAATTCTATTAATGGAGG+GGG | 0.518129 | 7.1:+11201359 | None:intergenic |
| GCCTGATGGTCAAGGTGCCA+GGG | 0.518214 | 7.1:-11204716 | MS.gene018731:CDS |
| GAAATAGCCTCAAGATTAGT+GGG | 0.518552 | 7.1:-11200629 | MS.gene018731:CDS |
| CGCAAAATTGATGCAGTAGG+TGG | 0.519400 | 7.1:-11203142 | MS.gene018731:CDS |
| GCCAACTTTGTCTCTGTAAG+GGG | 0.519558 | 7.1:+11200291 | None:intergenic |
| TCTAGGTTGACGAACTTTGT+GGG | 0.519658 | 7.1:-11199240 | MS.gene018731:CDS |
| GAGGTGCAATTCTCAGTCCT+TGG | 0.520896 | 7.1:+11199208 | None:intergenic |
| CATGAGGCCATCGAATTTGG+AGG | 0.521208 | 7.1:+11206366 | None:intergenic |
| GGGAGATGTGTCTGCGAGCA+GGG | 0.522810 | 7.1:-11204346 | MS.gene018731:CDS |
| TTGGCAACAGAATGCTCCTA+TGG | 0.523040 | 7.1:-11200273 | MS.gene018731:CDS |
| TGCAATTCTTGTTGAAGGTG+AGG | 0.523731 | 7.1:-11197908 | MS.gene018731:CDS |
| GCTGAAAGTCAAACTTCTGT+AGG | 0.524644 | 7.1:-11203381 | MS.gene018731:CDS |
| CAAAGCGTGCTGAAGGGAAG+TGG | 0.527140 | 7.1:-11203579 | MS.gene018731:CDS |
| GTCGAAATCTGATGCAATCA+GGG | 0.527691 | 7.1:-11201648 | MS.gene018731:CDS |
| GGCTATTTCAATATCTTGAA+GGG | 0.528095 | 7.1:+11200643 | None:intergenic |
| AAGTACATTGAGAGCGGTGG+TGG | 0.529024 | 7.1:-11205914 | MS.gene018731:CDS |
| GTCAAAGGCCGCTAAAGTCA+AGG | 0.529642 | 7.1:-11204367 | MS.gene018731:CDS |
| CGCATATCTACTAAGCCTGA+TGG | 0.530256 | 7.1:-11204730 | MS.gene018731:CDS |
| TGATGACACCGGTTTCCCAC+AGG | 0.530388 | 7.1:+11198570 | None:intergenic |
| ACTGGGCAAGAAAATGCCCC+TGG | 0.531158 | 7.1:-11198632 | MS.gene018731:CDS |
| ATAATATGTGGATGAATGGA+AGG | 0.532035 | 7.1:+11200925 | None:intergenic |
| AAGTGGATAATTTGCCTGGA+TGG | 0.532909 | 7.1:-11204642 | MS.gene018731:CDS |
| TGCGAACCAAAGCGTGCTGA+AGG | 0.533007 | 7.1:-11203586 | MS.gene018731:CDS |
| TCCTCATCCCTAATAATATG+TGG | 0.533242 | 7.1:+11200913 | None:intergenic |
| TTTGAACCAGCATTCGACTT+CGG | 0.536967 | 7.1:+11205878 | None:intergenic |
| AGCTTGATTTGCGTGACCGT+TGG | 0.538235 | 7.1:-11204152 | MS.gene018731:intron |
| GAACCATATAGCCAGTTGCT+GGG | 0.542371 | 7.1:+11199178 | None:intergenic |
| GATCAAGATGCTCTTTAATG+TGG | 0.543678 | 7.1:-11201339 | MS.gene018731:CDS |
| ATGTACAAAGTTGAAATGAT+TGG | 0.544000 | 7.1:-11202772 | MS.gene018731:CDS |
| AGAACTTAGAGTCGCTTCGT+TGG | 0.544067 | 7.1:-11205958 | MS.gene018731:CDS |
| CTTCATGCAAAAGTGAAGAA+AGG | 0.545004 | 7.1:-11203115 | MS.gene018731:intron |
| GCAACCGAGAAGCTCCGTCT+TGG | 0.548248 | 7.1:-11206403 | MS.gene018731:CDS |
| CGAGTGGGAAATGACAAGAT+TGG | 0.548954 | 7.1:-11201692 | MS.gene018731:CDS |
| AAGTTTCACTGTTTGATGGT+TGG | 0.549237 | 7.1:+11203352 | None:intergenic |
| TCCAAAGGTGGCACTAAACG+GGG | 0.550317 | 7.1:-11204414 | MS.gene018731:CDS |
| GGCACACCGAAGTCGAATGC+TGG | 0.551393 | 7.1:-11205884 | MS.gene018731:CDS |
| TGATCAATTCTATTAATGGA+GGG | 0.554166 | 7.1:+11201357 | None:intergenic |
| TTGATCAATTCTATTAATGG+AGG | 0.555295 | 7.1:+11201356 | None:intergenic |
| TGAGCTCATACACATTTCCA+AGG | 0.555953 | 7.1:+11198889 | None:intergenic |
| CCAGTTGCTGGGGCTTCAGG+AGG | 0.557381 | 7.1:+11199189 | None:intergenic |
| ACTGAGCACTCTTGCTGACA+AGG | 0.558738 | 7.1:+11198967 | None:intergenic |
| GATCAATTCTATTAATGGAG+GGG | 0.558979 | 7.1:+11201358 | None:intergenic |
| ATCTTCAGGCAACCCAGAGA+TGG | 0.559690 | 7.1:+11203311 | None:intergenic |
| ATTGATCTCAAATTCCATCA+TGG | 0.560644 | 7.1:+11201232 | None:intergenic |
| AGCAAGCTATCCCTGACTGA+TGG | 0.560975 | 7.1:+11200982 | None:intergenic |
| TACAGATACTAACTGCTTGG+TGG | 0.561481 | 7.1:-11203003 | MS.gene018731:intron |
| AATATGTCCGAAATGCCACT+TGG | 0.562170 | 7.1:-11201212 | MS.gene018731:CDS |
| CAAAGATCTCTGGGCTCTGA+AGG | 0.563703 | 7.1:-11204253 | MS.gene018731:CDS |
| TGCTACGTGTTTCGCAAATG+GGG | 0.565409 | 7.1:-11201716 | MS.gene018731:CDS |
| TTTGTTCCCAGGCCTCCCAA+GGG | 0.569125 | 7.1:+11201591 | None:intergenic |
| CTTTGGTTCGCAGGTAGAGT+AGG | 0.569654 | 7.1:+11203597 | None:intergenic |
| CTTTGCATATTCAGATTCCA+GGG | 0.571220 | 7.1:+11198615 | None:intergenic |
| GTTTCGCAAATGGGGTCGAG+TGG | 0.571251 | 7.1:-11201708 | MS.gene018731:CDS |
| GTGGGAAATGACAAGATTGG+AGG | 0.572154 | 7.1:-11201689 | MS.gene018731:CDS |
| ACTTACAGATACTAACTGCT+TGG | 0.575225 | 7.1:-11203006 | MS.gene018731:intron |
| ACTATCTCCATCAATTGAAG+TGG | 0.576095 | 7.1:-11204659 | MS.gene018731:CDS |
| GAGAGCGGTGGTGGTAGTAG+TGG | 0.577586 | 7.1:-11205905 | MS.gene018731:CDS |
| ATGGTCACCATCAAAGTCAA+GGG | 0.578992 | 7.1:-11202736 | MS.gene018731:CDS |
| TATTGCCTCCGCCATCATCA+AGG | 0.581370 | 7.1:-11203410 | MS.gene018731:CDS |
| ACTAACTGCTTGGTGGTCAG+TGG | 0.581725 | 7.1:-11202996 | MS.gene018731:CDS |
| CATGGTCACCATCAAAGTCA+AGG | 0.582667 | 7.1:-11202737 | MS.gene018731:CDS |
| ACCGGTGTCATCAAATGTCA+AGG | 0.583088 | 7.1:-11198560 | MS.gene018731:CDS |
| TCCAAGGGGAAGAATCTCCC+AGG | 0.585297 | 7.1:+11201551 | None:intergenic |
| GATGAGAGACTACTCCATCC+AGG | 0.585331 | 7.1:+11204628 | None:intergenic |
| AGAAATAGTACAATTTCCAA+GGG | 0.587610 | 7.1:+11201536 | None:intergenic |
| ATGGTGCCAAGCCAAACCCC+TGG | 0.590698 | 7.1:+11204699 | None:intergenic |
| AGACTATTCAGAAGCAACCT+GGG | 0.591957 | 7.1:-11201568 | MS.gene018731:CDS |
| TCTGGCCACATACTAGAGGA+AGG | 0.592429 | 7.1:-11202676 | MS.gene018731:CDS |
| GCTGATGGAATGATGTTTGG+AGG | 0.592452 | 7.1:-11203712 | MS.gene018731:CDS |
| GTTATTCTGGAGGAATGTAC+CGG | 0.592767 | 7.1:-11203654 | MS.gene018731:CDS |
| TAGAGACATACCGTATGTGT+GGG | 0.593287 | 7.1:+11200479 | None:intergenic |
| TCTACTAAGCCTGATGGTCA+AGG | 0.596570 | 7.1:-11204724 | MS.gene018731:CDS |
| GTAGAATGCTTTCCTTGCGG+AGG | 0.597209 | 7.1:+11198661 | None:intergenic |
| GAAGTCCTTGATGATGGCGG+AGG | 0.598242 | 7.1:+11203405 | None:intergenic |
| TCAAAGGCCGCTAAAGTCAA+GGG | 0.599366 | 7.1:-11204366 | MS.gene018731:CDS |
| GCCCCTTACAGAGACAAAGT+TGG | 0.599749 | 7.1:-11200292 | MS.gene018731:CDS |
| AAACCATCACATAGAGAGCA+AGG | 0.601001 | 7.1:+11203682 | None:intergenic |
| AAGTTGAGATGCGGAAGGCA+AGG | 0.601482 | 7.1:-11202959 | MS.gene018731:intron |
| TGGGAAATGACAAGATTGGA+GGG | 0.601675 | 7.1:-11201688 | MS.gene018731:CDS |
| AACAGAATGCTCCTATGGCA+TGG | 0.602372 | 7.1:-11200268 | MS.gene018731:intron |
| AGGTTCCATCACAAGAAATG+AGG | 0.602431 | 7.1:-11197888 | None:intergenic |
| AAGCATTCTACTAAAGGACT+GGG | 0.602949 | 7.1:-11198649 | MS.gene018731:CDS |
| GATTGGTGAGGCTTCTAGCA+TGG | 0.603400 | 7.1:-11202755 | MS.gene018731:CDS |
| TCTTCAATATGCACTCAGCA+TGG | 0.604013 | 7.1:+11206106 | None:intergenic |
| TTTCGCAAATGGGGTCGAGT+GGG | 0.606651 | 7.1:-11201707 | MS.gene018731:CDS |
| ACGTGATCTTGAGAATAGAC+TGG | 0.608484 | 7.1:-11204286 | MS.gene018731:CDS |
| TCAATCGGCGGTCAGTGAGT+TGG | 0.609881 | 7.1:-11204599 | MS.gene018731:CDS |
| CGGAAATGTATCCAGTGCAC+CGG | 0.610371 | 7.1:+11203635 | None:intergenic |
| GCCTTGACATTTGATGACAC+CGG | 0.612387 | 7.1:+11198559 | None:intergenic |
| CTCATCTTCTGATCAATCGG+CGG | 0.612790 | 7.1:-11204611 | MS.gene018731:CDS |
| GTCAAATCCCACTAATCTTG+AGG | 0.614798 | 7.1:+11200622 | None:intergenic |
| AAGCTTAAAACTTACTTGAG+CGG | 0.615129 | 7.1:+11198498 | None:intergenic |
| AAACGCAAAATTGATGCAGT+AGG | 0.615874 | 7.1:-11203145 | MS.gene018731:CDS |
| CTAAAATCTTCACTGTCATG+AGG | 0.616080 | 7.1:+11200536 | None:intergenic |
| GTTCAATCCTCCAAATTCGA+TGG | 0.617034 | 7.1:-11206373 | MS.gene018731:CDS |
| TAATATGTGGATGAATGGAA+GGG | 0.619233 | 7.1:+11200926 | None:intergenic |
| CCTGATGGTCAAGGTGCCAG+GGG | 0.620093 | 7.1:-11204715 | MS.gene018731:CDS |
| AAGTTATGATTACGGGCATG+AGG | 0.620971 | 7.1:+11206350 | None:intergenic |
| GTAGGAACATTTACTCCACT+CGG | 0.621416 | 7.1:+11203615 | None:intergenic |
| GAGCTCATACACATTTCCAA+GGG | 0.623853 | 7.1:+11198890 | None:intergenic |
| CGTGCTGGTTGCAAGCATTG+CGG | 0.624498 | 7.1:-11205785 | MS.gene018731:CDS |
| GATGACACCGGTTTCCCACA+GGG | 0.624877 | 7.1:+11198571 | None:intergenic |
| AACCATATAGCCAGTTGCTG+GGG | 0.625838 | 7.1:+11199179 | None:intergenic |
| ATAGAGACATACCGTATGTG+TGG | 0.626667 | 7.1:+11200478 | None:intergenic |
| CAACAATCCTCTTCCAAAGG+TGG | 0.628043 | 7.1:-11204426 | MS.gene018731:CDS |
| GCGAACCAAAGCGTGCTGAA+GGG | 0.628775 | 7.1:-11203585 | MS.gene018731:CDS |
| ATATGTCCGAAATGCCACTT+GGG | 0.628831 | 7.1:-11201211 | MS.gene018731:CDS |
| CGTGAAATGCTGGATGCCAA+TGG | 0.629579 | 7.1:-11204195 | MS.gene018731:CDS |
| GATGATGTCGTTGTTCCCTG+TGG | 0.635856 | 7.1:-11198586 | MS.gene018731:CDS |
| TCCAGCACTCGACTTAGAGG+CGG | 0.639433 | 7.1:+11205847 | None:intergenic |
| AGAGGGTGAGCAAAAGTCAA+AGG | 0.641322 | 7.1:-11204382 | MS.gene018731:CDS |
| ACACAACAATCCTCTTCCAA+AGG | 0.641848 | 7.1:-11204429 | MS.gene018731:CDS |
| CAATGCTGATCCATCAGTCA+GGG | 0.642435 | 7.1:-11200992 | MS.gene018731:CDS |
| ACCAAAACTTACCATGCCAT+AGG | 0.643460 | 7.1:+11200257 | None:intergenic |
| TTTGGAAGAGGATTGTTGTG+TGG | 0.645988 | 7.1:+11204431 | None:intergenic |
| CTGGCCACATACTAGAGGAA+GGG | 0.647983 | 7.1:-11202675 | MS.gene018731:CDS |
| AGAAAGTACATTGAGAGCGG+TGG | 0.649025 | 7.1:-11205917 | MS.gene018731:CDS |
| GGATTCTGGCCACATACTAG+AGG | 0.653815 | 7.1:-11202680 | MS.gene018731:CDS |
| TTTGTGGGCATTCTTAACCA+AGG | 0.654222 | 7.1:-11199225 | MS.gene018731:CDS |
| TGGTAGTGGTACAAATGTCG+AGG | 0.657202 | 7.1:-11204472 | MS.gene018731:CDS |
| GAAAATACCAATAGTCAGAG+AGG | 0.660210 | 7.1:-11202842 | MS.gene018731:CDS |
| TATATGGATAAACCTCCGCA+AGG | 0.661215 | 7.1:-11198673 | MS.gene018731:CDS |
| CAAAGTTGAAATGATTGGTG+AGG | 0.661472 | 7.1:-11202767 | MS.gene018731:CDS |
| TTAGTAGAATGCTTTCCTTG+CGG | 0.662055 | 7.1:+11198658 | None:intergenic |
| TTTGCATATTCAGATTCCAG+GGG | 0.662095 | 7.1:+11198616 | None:intergenic |
| TGGAATCTGAATATGCAAAG+TGG | 0.664227 | 7.1:-11198612 | MS.gene018731:CDS |
| TGGTCACCATCAAAGTCAAG+GGG | 0.670459 | 7.1:-11202735 | MS.gene018731:CDS |
| GAAAACTGGAAACCCTTGGG+AGG | 0.670628 | 7.1:-11201603 | MS.gene018731:CDS |
| ATGATGTCGTTGTTCCCTGT+GGG | 0.672597 | 7.1:-11198585 | MS.gene018731:CDS |
| GCAGAAGTCCTTGATGATGG+CGG | 0.672844 | 7.1:+11203402 | None:intergenic |
| GGATGAAGTTGAGATGCGGA+AGG | 0.673329 | 7.1:-11202964 | MS.gene018731:CDS |
| GAGACATACCGTATGTGTGG+GGG | 0.676001 | 7.1:+11200481 | None:intergenic |
| AGAGACATACCGTATGTGTG+GGG | 0.679754 | 7.1:+11200480 | None:intergenic |
| GTTCCAAGAGACACTTAGCA+TGG | 0.680316 | 7.1:+11204680 | None:intergenic |
| CCAAAGGTGGCACTAAACGG+GGG | 0.682751 | 7.1:-11204413 | MS.gene018731:CDS |
| ATTAGAAAGTACATTGAGAG+CGG | 0.683297 | 7.1:-11205920 | MS.gene018731:CDS |
| TTAAGGATGAAGTTGAGATG+CGG | 0.698261 | 7.1:-11202968 | MS.gene018731:CDS |
| TGATCTTGAGAATAGACTGG+AGG | 0.707817 | 7.1:-11204283 | MS.gene018731:CDS |
| AGGGAAGTGGAAAATCCCAA+AGG | 0.709398 | 7.1:-11203566 | MS.gene018731:CDS |
| GAAATAGTACAATTTCCAAG+GGG | 0.718834 | 7.1:+11201537 | None:intergenic |
| GATCTCAAATTCCATCATGG+CGG | 0.725809 | 7.1:+11201235 | None:intergenic |
| GATTGGAGGGAACAAACTGG+AGG | 0.726096 | 7.1:-11201675 | MS.gene018731:CDS |
| AAATGCTGATGACTCCGGGG+CGG | 0.729846 | 7.1:-11204310 | MS.gene018731:CDS |
| GCACTGGATACATTTCCGAG+TGG | 0.746551 | 7.1:-11203630 | MS.gene018731:CDS |
| GAAGTGGAGATATATCACAG+TGG | 0.820451 | 7.1:+11200558 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 11197890 | 11206512 | 11197890 | ID=MS.gene018731 |
| chr7.1 | mRNA | 11197890 | 11206512 | 11197890 | ID=MS.gene018731.t1;Parent=MS.gene018731 |
| chr7.1 | exon | 11206363 | 11206512 | 11206363 | ID=MS.gene018731.t1.exon1;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11206363 | 11206512 | 11206363 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11206087 | 11206136 | 11206087 | ID=MS.gene018731.t1.exon2;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11206087 | 11206136 | 11206087 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11205763 | 11205994 | 11205763 | ID=MS.gene018731.t1.exon3;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11205763 | 11205994 | 11205763 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11204569 | 11204755 | 11204569 | ID=MS.gene018731.t1.exon4;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11204569 | 11204755 | 11204569 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11204153 | 11204495 | 11204153 | ID=MS.gene018731.t1.exon5;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11204153 | 11204495 | 11204153 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11203540 | 11203735 | 11203540 | ID=MS.gene018731.t1.exon6;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11203540 | 11203735 | 11203540 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11203305 | 11203469 | 11203305 | ID=MS.gene018731.t1.exon7;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11203305 | 11203469 | 11203305 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11203116 | 11203176 | 11203116 | ID=MS.gene018731.t1.exon8;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11203116 | 11203176 | 11203116 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11202960 | 11203020 | 11202960 | ID=MS.gene018731.t1.exon9;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11202960 | 11203020 | 11202960 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11202619 | 11202870 | 11202619 | ID=MS.gene018731.t1.exon10;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11202619 | 11202870 | 11202619 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11201547 | 11201781 | 11201547 | ID=MS.gene018731.t1.exon11;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11201547 | 11201781 | 11201547 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11201329 | 11201441 | 11201329 | ID=MS.gene018731.t1.exon12;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11201329 | 11201441 | 11201329 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11201183 | 11201259 | 11201183 | ID=MS.gene018731.t1.exon13;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11201183 | 11201259 | 11201183 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11200897 | 11201057 | 11200897 | ID=MS.gene018731.t1.exon14;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11200897 | 11201057 | 11200897 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11200490 | 11200681 | 11200490 | ID=MS.gene018731.t1.exon15;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11200490 | 11200681 | 11200490 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11200269 | 11200377 | 11200269 | ID=MS.gene018731.t1.exon16;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11200269 | 11200377 | 11200269 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11199182 | 11199264 | 11199182 | ID=MS.gene018731.t1.exon17;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11199182 | 11199264 | 11199182 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11198878 | 11199015 | 11198878 | ID=MS.gene018731.t1.exon18;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11198878 | 11199015 | 11198878 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11198513 | 11198695 | 11198513 | ID=MS.gene018731.t1.exon19;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11198513 | 11198695 | 11198513 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| chr7.1 | exon | 11197890 | 11197937 | 11197890 | ID=MS.gene018731.t1.exon20;Parent=MS.gene018731.t1 |
| chr7.1 | CDS | 11197890 | 11197937 | 11197890 | ID=cds.MS.gene018731.t1;Parent=MS.gene018731.t1 |
| Gene Sequence |
| Protein sequence |
