Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020833.t1 | XP_004491530.1 | 97.6 | 699 | 17 | 0 | 1 | 699 | 1 | 699 | 0.00E+00 | 1244.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020833.t1 | P36181 | 93.0 | 699 | 49 | 0 | 1 | 699 | 1 | 699 | 0.0e+00 | 1198.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020833.t1 | A0A1S2XPL0 | 97.6 | 699 | 17 | 0 | 1 | 699 | 1 | 699 | 0.0e+00 | 1244.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene020833 | MS.gene020886 | PPI |
| MS.gene37988 | MS.gene020833 | PPI |
| MS.gene37989 | MS.gene020833 | PPI |
| MS.gene020833 | MS.gene60613 | PPI |
| MS.gene020833 | MS.gene62607 | PPI |
| MS.gene020833 | MS.gene38262 | PPI |
| MS.gene020833 | MS.gene061126 | PPI |
| MS.gene020833 | MS.gene38261 | PPI |
| MS.gene24136 | MS.gene020833 | PPI |
| MS.gene020833 | MS.gene006231 | PPI |
| MS.gene020833 | MS.gene75388 | PPI |
| MS.gene020833 | MS.gene029690 | PPI |
| MS.gene020833 | MS.gene38210 | PPI |
| MS.gene020833 | MS.gene020834 | PPI |
| MS.gene020833 | MS.gene62123 | PPI |
| MS.gene020833 | MS.gene64023 | PPI |
| MS.gene020833 | MS.gene75389 | PPI |
| MS.gene020833 | MS.gene49154 | PPI |
| MS.gene81285 | MS.gene020833 | PPI |
| MS.gene020833 | MS.gene64024 | PPI |
| MS.gene81288 | MS.gene020833 | PPI |
| MS.gene020833 | MS.gene30654 | PPI |
| MS.gene81227 | MS.gene020833 | PPI |
| MS.gene020833 | MS.gene040499 | PPI |
| MS.gene020833 | MS.gene27084 | PPI |
| MS.gene020833 | MS.gene38049 | PPI |
| MS.gene020833 | MS.gene64225 | PPI |
| MS.gene58998 | MS.gene020833 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020833.t1 | MTR_5g096430 | 99.857 | 699 | 1 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1419 |
| MS.gene020833.t1 | MTR_5g096460 | 99.857 | 699 | 1 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1419 |
| MS.gene020833.t1 | MTR_6g452990 | 88.160 | 701 | 79 | 3 | 1 | 699 | 1 | 699 | 0.0 | 1186 |
| MS.gene020833.t1 | MTR_1g099840 | 84.692 | 699 | 92 | 2 | 1 | 699 | 6 | 689 | 0.0 | 1146 |
| MS.gene020833.t1 | MTR_1g025430 | 48.867 | 706 | 320 | 8 | 5 | 673 | 78 | 779 | 0.0 | 642 |
| MS.gene020833.t1 | MTR_5g097320 | 45.562 | 676 | 345 | 10 | 5 | 667 | 90 | 755 | 0.0 | 577 |
| MS.gene020833.t1 | MTR_0009s0390 | 45.634 | 710 | 354 | 13 | 5 | 698 | 82 | 775 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020833.t1 | AT5G56000 | 90.714 | 700 | 63 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1205 |
| MS.gene020833.t1 | AT5G56030 | 92.286 | 700 | 52 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1196 |
| MS.gene020833.t1 | AT5G56010 | 92.000 | 700 | 54 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1194 |
| MS.gene020833.t1 | AT5G56030 | 88.615 | 729 | 52 | 3 | 1 | 699 | 1 | 728 | 0.0 | 1181 |
| MS.gene020833.t1 | AT5G52640 | 85.185 | 702 | 99 | 5 | 1 | 699 | 1 | 700 | 0.0 | 1148 |
| MS.gene020833.t1 | AT4G24190 | 50.356 | 703 | 310 | 8 | 5 | 672 | 77 | 775 | 0.0 | 643 |
| MS.gene020833.t1 | AT4G24190 | 50.356 | 703 | 310 | 8 | 5 | 672 | 77 | 775 | 0.0 | 642 |
| MS.gene020833.t1 | AT2G04030 | 47.485 | 676 | 329 | 11 | 5 | 668 | 77 | 738 | 0.0 | 597 |
| MS.gene020833.t1 | AT3G07770 | 45.495 | 677 | 346 | 10 | 5 | 668 | 95 | 761 | 0.0 | 590 |
| MS.gene020833.t1 | AT3G07770 | 45.495 | 677 | 346 | 10 | 5 | 668 | 95 | 761 | 0.0 | 590 |
| MS.gene020833.t1 | AT3G07770 | 45.495 | 677 | 346 | 10 | 5 | 668 | 95 | 761 | 0.0 | 590 |
| MS.gene020833.t1 | AT2G04030 | 47.033 | 674 | 332 | 11 | 5 | 668 | 77 | 735 | 0.0 | 588 |
Find 186 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGGACAGTTGGAGTTTA+AGG | 0.160886 | 5.4:-75568427 | MS.gene020833:CDS |
| AATCTCCTTGTTACTGTAAA+AGG | 0.195492 | 5.4:+75570177 | None:intergenic |
| GAGACTGCTCTTCTTACTTC+TGG | 0.243959 | 5.4:-75567418 | MS.gene020833:CDS |
| TTTCCTCAGCTCCTCCATTA+TGG | 0.246479 | 5.4:+75567498 | None:intergenic |
| ACAAGAGACGTTTGCTTTCC+AGG | 0.252769 | 5.4:-75570236 | MS.gene020833:CDS |
| TTCTCAACCCAAAGAGAAAT+TGG | 0.256773 | 5.4:+75568720 | None:intergenic |
| TGAACAAGCAGAAGCCTATT+TGG | 0.260701 | 5.4:-75568551 | MS.gene020833:CDS |
| TTAGCTATCCAATTTCTCTT+TGG | 0.269210 | 5.4:-75568728 | MS.gene020833:CDS |
| TTCCTCAGCTCCTCCATTAT+GGG | 0.271018 | 5.4:+75567499 | None:intergenic |
| CTTGATGAGCCCAACACTTT+TGG | 0.271765 | 5.4:-75567388 | MS.gene020833:CDS |
| TAGCTATCCAATTTCTCTTT+GGG | 0.282969 | 5.4:-75568727 | MS.gene020833:CDS |
| ACTATCATTGATAGTGGAAT+TGG | 0.289715 | 5.4:-75569213 | MS.gene020833:CDS |
| CTCCTCCATTATGGGGTTCT+CGG | 0.308210 | 5.4:+75567507 | None:intergenic |
| CAATGATTGGGAAGAGCATT+TGG | 0.340719 | 5.4:-75568469 | MS.gene020833:CDS |
| TCCTCCATTATGGGGTTCTC+GGG | 0.353116 | 5.4:+75567508 | None:intergenic |
| TGTTTAGTGACTGGTGAGTA+TGG | 0.358330 | 5.4:-75567628 | MS.gene020833:CDS |
| TCATGCTAACTTACCAGCTT+TGG | 0.369152 | 5.4:+75569185 | None:intergenic |
| TCAGGCTTCCTCATCCAAAT+AGG | 0.372502 | 5.4:+75568537 | None:intergenic |
| GACATACAGCTTGATGTTGT+TGG | 0.373069 | 5.4:+75568347 | None:intergenic |
| GTCTGGTACCAAGGAATTCA+TGG | 0.376590 | 5.4:-75569036 | MS.gene020833:CDS |
| AATGACATTTACTACATTAC+CGG | 0.381181 | 5.4:-75567955 | MS.gene020833:CDS |
| ACAAGAGTCTCACCAATGAT+TGG | 0.384273 | 5.4:-75568482 | MS.gene020833:CDS |
| ACATACAGCTTGATGTTGTT+GGG | 0.394439 | 5.4:+75568348 | None:intergenic |
| AAGGTGTTGTTGGTCTTGTC+AGG | 0.401362 | 5.4:+75569237 | None:intergenic |
| TCAACAGAACAAGATTCTTA+AGG | 0.404319 | 5.4:-75568211 | MS.gene020833:CDS |
| GAAGAAGGAAGAGGAGGGTA+AGG | 0.417477 | 5.4:-75568655 | MS.gene020833:CDS |
| GGTGCTGATGTTAGCATGAT+TGG | 0.418135 | 5.4:-75568999 | MS.gene020833:CDS |
| CGAGGAAGAGAAGAAGGAAG+AGG | 0.429375 | 5.4:-75568664 | MS.gene020833:CDS |
| GGTCATGTCATCACCACTCT+TGG | 0.434025 | 5.4:+75568017 | None:intergenic |
| GGAAGAGGAGGGTAAGGTTG+AGG | 0.435286 | 5.4:-75568649 | MS.gene020833:CDS |
| CATGAAGGCACAGGCTTTGA+GGG | 0.435413 | 5.4:-75567581 | MS.gene020833:CDS |
| ACAAGATTCTTAAGGTCATC+AGG | 0.437555 | 5.4:-75568203 | MS.gene020833:CDS |
| CAACCCCGAGAACCCCATAA+TGG | 0.440515 | 5.4:-75567512 | MS.gene020833:CDS |
| GTTAGCATGATTGGACAGTT+TGG | 0.443805 | 5.4:-75568990 | MS.gene020833:CDS |
| TTTGTGTCAAAGAGATCAAA+AGG | 0.446679 | 5.4:+75568378 | None:intergenic |
| CTAGTGTCTGCAACTAAAGA+AGG | 0.450314 | 5.4:-75567799 | MS.gene020833:CDS |
| AATGATAGTCAAGGTGTTGT+TGG | 0.456218 | 5.4:+75569227 | None:intergenic |
| CCTTGAGAAGCTTAGGAAGA+AGG | 0.459680 | 5.4:-75567899 | MS.gene020833:CDS |
| CAAGAGTCTCACCAATGATT+GGG | 0.462392 | 5.4:-75568481 | MS.gene020833:CDS |
| CAAATGCTCTTCCCAATCAT+TGG | 0.463958 | 5.4:+75568470 | None:intergenic |
| TGGTCAACTCAAGGAATTTG+AGG | 0.466459 | 5.4:-75567830 | MS.gene020833:CDS |
| TCGTCCTTTGTGATCTCCTC+AGG | 0.466562 | 5.4:+75568519 | None:intergenic |
| TTGAGGGATAGCAGCATGGC+TGG | 0.470021 | 5.4:-75567565 | MS.gene020833:CDS |
| GGTGGTAACAATAACCTTCT+CGG | 0.473999 | 5.4:+75568938 | None:intergenic |
| ACCTTGACTATCATTGATAG+TGG | 0.474059 | 5.4:-75569219 | MS.gene020833:CDS |
| TCATGAAGGCACAGGCTTTG+AGG | 0.476598 | 5.4:-75567582 | MS.gene020833:CDS |
| TATGGCTTCCATGAATTCCT+TGG | 0.477216 | 5.4:+75569028 | None:intergenic |
| AGTGAATGACCCACCAGCTT+GGG | 0.479426 | 5.4:+75568881 | None:intergenic |
| TGAGGACGAGGAAGAGAAGA+AGG | 0.480741 | 5.4:-75568670 | MS.gene020833:CDS |
| AGAATCAAGCTTGCTCTTGT+CGG | 0.482487 | 5.4:+75569287 | None:intergenic |
| AGATCAAAAGGTGCTCTCTT+CGG | 0.483306 | 5.4:+75568390 | None:intergenic |
| CAACTGGTGAAGCTCTTGGC+AGG | 0.483720 | 5.4:-75568845 | MS.gene020833:CDS |
| CTTTGAAATTGCTGAGAACA+AGG | 0.486596 | 5.4:-75568148 | MS.gene020833:CDS |
| GGAAGAGAAGAAGGAAGAGG+AGG | 0.487208 | 5.4:-75568661 | MS.gene020833:CDS |
| TGTTAAGCACTTCTCTGTTG+AGG | 0.488225 | 5.4:-75568445 | MS.gene020833:CDS |
| CATGTCATCACCACTCTTGG+TGG | 0.488480 | 5.4:+75568020 | None:intergenic |
| ATTCTGTCCTTCCTTCATCC+TGG | 0.488551 | 5.4:+75567975 | None:intergenic |
| GTTAAGCACTTCTCTGTTGA+GGG | 0.489262 | 5.4:-75568444 | MS.gene020833:CDS |
| CAAAGCTTGCTGATTTGCTC+AGG | 0.489387 | 5.4:-75568050 | MS.gene020833:CDS |
| AACATCAGCACCAGCAGCTA+TGG | 0.489580 | 5.4:+75569010 | None:intergenic |
| ATTTCTCTTGAAATGTTAAG+TGG | 0.491469 | 5.4:+75568237 | None:intergenic |
| CTTCTCTAAGAACTTGAAGC+TGG | 0.492825 | 5.4:-75568100 | MS.gene020833:CDS |
| GGTGTCTAATGAATGGTCTT+TGG | 0.492991 | 5.4:-75568574 | MS.gene020833:CDS |
| TAGCTTTGTGAAGGGTATTG+TGG | 0.493429 | 5.4:-75568274 | MS.gene020833:CDS |
| GGAACGCCGTCTGAAGGACT+TGG | 0.493605 | 5.4:-75568772 | MS.gene020833:CDS |
| AACAGCTTTCTTGCTTTCAC+CGG | 0.494202 | 5.4:+75567936 | None:intergenic |
| CTTCTCTGTTGAGGGACAGT+TGG | 0.494681 | 5.4:-75568436 | MS.gene020833:CDS |
| CTTCCTAAGCTTCTCAAGGA+AGG | 0.495109 | 5.4:+75567903 | None:intergenic |
| CAATCTTTGCAAGGTGATCA+AGG | 0.496155 | 5.4:-75567713 | MS.gene020833:CDS |
| AGCTTCACCAGTTGTATCCC+TGG | 0.498334 | 5.4:+75568854 | None:intergenic |
| TCGCCTTGCTGTTTAGTGAC+TGG | 0.498348 | 5.4:-75567637 | MS.gene020833:CDS |
| AGTAGATGAGGAGAAAGAAA+AGG | 0.499471 | 5.4:-75568625 | MS.gene020833:CDS |
| GGGTGACAAGGTTGAGAAAG+TGG | 0.499707 | 5.4:-75567683 | MS.gene020833:CDS |
| CTTCACAAAGCTAAGATACT+CGG | 0.499785 | 5.4:+75568284 | None:intergenic |
| TTCATCATCATTGTGCTTGG+TGG | 0.500075 | 5.4:+75568920 | None:intergenic |
| GGAATTGGAATGACCAAAGC+TGG | 0.500501 | 5.4:-75569198 | MS.gene020833:intron |
| GATACAACTGGTGAAGCTCT+TGG | 0.501895 | 5.4:-75568849 | MS.gene020833:CDS |
| CTAGGTACCATTGCTAGGTC+TGG | 0.502477 | 5.4:-75569053 | MS.gene020833:CDS |
| TGCTTACCTTGTTGCCGAGA+AGG | 0.502623 | 5.4:-75568952 | MS.gene020833:CDS |
| GAAGAGAAGAAGGAAGAGGA+GGG | 0.502813 | 5.4:-75568660 | MS.gene020833:CDS |
| CTTGAGAAGCTTAGGAAGAA+GGG | 0.508184 | 5.4:-75567898 | MS.gene020833:CDS |
| CAAGGTGATCAAGGAGGTGT+TGG | 0.509412 | 5.4:-75567704 | MS.gene020833:CDS |
| TTCCTAAGCTTCTCAAGGAA+GGG | 0.510661 | 5.4:+75567904 | None:intergenic |
| GTGGGTCATTCACTGTGACC+AGG | 0.512028 | 5.4:-75568872 | MS.gene020833:CDS |
| TCCTAAGCTTCTCAAGGAAG+GGG | 0.515007 | 5.4:+75567905 | None:intergenic |
| TAAGGTCATCAGGAAGAACT+TGG | 0.516506 | 5.4:-75568193 | MS.gene020833:CDS |
| CTTCATGATCCTCTCCATGT+TGG | 0.521693 | 5.4:+75567597 | None:intergenic |
| ATGATTGGACAGTTTGGTGT+TGG | 0.524590 | 5.4:-75568984 | MS.gene020833:CDS |
| GGTCAACTCAAGGAATTTGA+GGG | 0.526415 | 5.4:-75567829 | MS.gene020833:CDS |
| TGCTGACATGCCACCATTGG+AGG | 0.530142 | 5.4:-75567302 | MS.gene020833:CDS |
| ATCCTGTTGCCAAAAGTGTT+GGG | 0.532827 | 5.4:+75567379 | None:intergenic |
| ATTCACAGGATGCTCAAGCT+TGG | 0.534491 | 5.4:-75567358 | MS.gene020833:CDS |
| TCAGCATCAGCTTCCTCCAA+TGG | 0.535356 | 5.4:+75567289 | None:intergenic |
| CATTGCTAGGTCTGGTACCA+AGG | 0.535688 | 5.4:-75569045 | MS.gene020833:CDS |
| TTAAGGAGGTGTCTAATGAA+TGG | 0.538054 | 5.4:-75568581 | MS.gene020833:CDS |
| AATCCTGTTGCCAAAAGTGT+TGG | 0.544511 | 5.4:+75567378 | None:intergenic |
| CTGTTCATCATCATTGTGCT+TGG | 0.544768 | 5.4:+75568917 | None:intergenic |
| TGATGCTGACATGCCACCAT+TGG | 0.545200 | 5.4:-75567305 | MS.gene020833:CDS |
| TAAGGTTGAGGAAGTAGATG+AGG | 0.545318 | 5.4:-75568637 | MS.gene020833:CDS |
| CGAGTATCTTAGCTTTGTGA+AGG | 0.545418 | 5.4:-75568283 | MS.gene020833:CDS |
| TTCATGGAAGCCATAGCTGC+TGG | 0.547466 | 5.4:-75569020 | MS.gene020833:CDS |
| TCCTCAGCTCCTCCATTATG+GGG | 0.548965 | 5.4:+75567500 | None:intergenic |
| ACCAACAGCATATTCATCAA+TGG | 0.549314 | 5.4:+75567849 | None:intergenic |
| GTGTGGGAGTCCCAAGCTGG+TGG | 0.550695 | 5.4:-75568891 | MS.gene020833:CDS |
| GGAGAGGATCATGAAGGCAC+AGG | 0.554892 | 5.4:-75567590 | MS.gene020833:CDS |
| CCTTCTTCCTAAGCTTCTCA+AGG | 0.555668 | 5.4:+75567899 | None:intergenic |
| CAGCTTCAAGTTCTTAGAGA+AGG | 0.556190 | 5.4:+75568101 | None:intergenic |
| GGAAACGTGCTGATGCGGAC+AGG | 0.560251 | 5.4:-75567480 | MS.gene020833:CDS |
| TAAAATAACTCTCATCCTCA+AGG | 0.561419 | 5.4:-75568817 | MS.gene020833:CDS |
| TAGTGACTGGTGAGTATGGT+TGG | 0.563826 | 5.4:-75567624 | MS.gene020833:CDS |
| CCAGATTTGGTGAACAACCT+AGG | 0.564348 | 5.4:-75569071 | MS.gene020833:intron |
| CAGTGAATGACCCACCAGCT+TGG | 0.566153 | 5.4:+75568880 | None:intergenic |
| GGACTATGTTACCAGGATGA+AGG | 0.567325 | 5.4:-75567986 | MS.gene020833:CDS |
| GAAAGAGATTTCTGATGATG+AGG | 0.568419 | 5.4:-75568688 | MS.gene020833:CDS |
| TCTTGAGGAACGCCGTCTGA+AGG | 0.568654 | 5.4:-75568778 | MS.gene020833:CDS |
| CAAAAGTGTTGGGCTCATCA+AGG | 0.569013 | 5.4:+75567389 | None:intergenic |
| ATAATGTGAATGAACAACTC+TGG | 0.569519 | 5.4:+75569261 | None:intergenic |
| ACTGTGACCAGGGATACAAC+TGG | 0.570046 | 5.4:-75568861 | MS.gene020833:CDS |
| AGAGGGAAGCAAGATGGAAG+AGG | 0.571151 | 5.4:-75567263 | MS.gene020833:CDS |
| CAATAACCTTCTCGGCAACA+AGG | 0.573151 | 5.4:+75568946 | None:intergenic |
| TTCTCTAAGAACTTGAAGCT+GGG | 0.573524 | 5.4:-75568099 | MS.gene020833:CDS |
| TGGGTCATTCACTGTGACCA+GGG | 0.573714 | 5.4:-75568871 | MS.gene020833:CDS |
| CAAGGAGGTGTTGGGTGACA+AGG | 0.575150 | 5.4:-75567695 | MS.gene020833:CDS |
| GGTAACATAGTCCTTGAGGC+TGG | 0.577318 | 5.4:+75567996 | None:intergenic |
| GGGATATGAAGTGATTTACA+TGG | 0.578493 | 5.4:-75567878 | MS.gene020833:CDS |
| ACAACCTAGGTACCATTGCT+AGG | 0.579010 | 5.4:-75569058 | MS.gene020833:CDS |
| TCTCAAACAGCAAGAGAACA+AGG | 0.580225 | 5.4:+75567437 | None:intergenic |
| TGTCGGTCAAGCCCTCAAAA+CGG | 0.582332 | 5.4:+75569304 | None:intergenic |
| AGCAGAAGCCTATTTGGATG+AGG | 0.584932 | 5.4:-75568545 | MS.gene020833:CDS |
| ACTGGTGAAGCTCTTGGCAG+GGG | 0.584964 | 5.4:-75568843 | MS.gene020833:CDS |
| GAAGTTGATTGATCTCAGCC+TGG | 0.587212 | 5.4:+75570218 | None:intergenic |
| AACTGGTGAAGCTCTTGGCA+GGG | 0.587596 | 5.4:-75568844 | MS.gene020833:CDS |
| GCTGAGGAAACGTGCTGATG+CGG | 0.588607 | 5.4:-75567485 | MS.gene020833:CDS |
| TTCACAAAGCTAAGATACTC+GGG | 0.588682 | 5.4:+75568285 | None:intergenic |
| CAGACCTAGCAATGGTACCT+AGG | 0.590700 | 5.4:+75569054 | None:intergenic |
| CATCACCACTCTTGGTGGAG+TGG | 0.592725 | 5.4:+75568025 | None:intergenic |
| GGCTTTGAGGGATAGCAGCA+TGG | 0.597369 | 5.4:-75567569 | MS.gene020833:CDS |
| ATATGCTGTTGGTCAACTCA+AGG | 0.599103 | 5.4:-75567839 | MS.gene020833:CDS |
| AGATTACAACAAGTTCTATG+AGG | 0.599707 | 5.4:-75568124 | MS.gene020833:CDS |
| GAAGTTCGACAATCTTTGCA+AGG | 0.601872 | 5.4:-75567722 | MS.gene020833:CDS |
| GAAGCTGATGCTGATGCAGA+GGG | 0.602230 | 5.4:-75567280 | MS.gene020833:CDS |
| ACCCCATAATGGAGGAGCTG+AGG | 0.602360 | 5.4:-75567501 | MS.gene020833:CDS |
| TGATGCAGAGGGAAGCAAGA+TGG | 0.604134 | 5.4:-75567269 | MS.gene020833:CDS |
| GATTTCTGATGATGAGGACG+AGG | 0.608743 | 5.4:-75568682 | MS.gene020833:CDS |
| TCCTGGTAACATAGTCCTTG+AGG | 0.608835 | 5.4:+75567992 | None:intergenic |
| TAGTGTCTGCAACTAAAGAA+GGG | 0.609080 | 5.4:-75567798 | MS.gene020833:CDS |
| GCCTCAAGGACTATGTTACC+AGG | 0.610223 | 5.4:-75567993 | MS.gene020833:CDS |
| CATGTCAAGCAAGAAGACAA+TGG | 0.611061 | 5.4:-75567539 | MS.gene020833:CDS |
| TATGTGTGGGAGTCCCAAGC+TGG | 0.615041 | 5.4:-75568894 | MS.gene020833:CDS |
| TCCACTATCAATGATAGTCA+AGG | 0.615433 | 5.4:+75569218 | None:intergenic |
| GCCATTGATGAATATGCTGT+TGG | 0.617134 | 5.4:-75567850 | MS.gene020833:CDS |
| GCTTGGTCTTAGCATTGATG+AGG | 0.619021 | 5.4:-75567341 | MS.gene020833:CDS |
| CAACATGGAGAGGATCATGA+AGG | 0.620851 | 5.4:-75567596 | MS.gene020833:CDS |
| CCTCCATTATGGGGTTCTCG+GGG | 0.620923 | 5.4:+75567509 | None:intergenic |
| GTTGAAACTTGACGAGAGTG+AGG | 0.621123 | 5.4:-75567776 | MS.gene020833:CDS |
| GGATCAACTTGAGTATCTTG+AGG | 0.629396 | 5.4:-75568793 | MS.gene020833:CDS |
| GAGTATCTTAGCTTTGTGAA+GGG | 0.631738 | 5.4:-75568282 | MS.gene020833:CDS |
| AGGTACCACTCCACCAAGAG+TGG | 0.636721 | 5.4:-75568030 | MS.gene020833:CDS |
| CAGGAATGACAAATCTGTCA+AGG | 0.640894 | 5.4:-75567461 | MS.gene020833:CDS |
| GTATGGTTGGACTGCCAACA+TGG | 0.641083 | 5.4:-75567611 | MS.gene020833:CDS |
| ACTCAAGTTGATCCTCCTTG+AGG | 0.641638 | 5.4:+75568802 | None:intergenic |
| TCTTAACCAAGTCCTTCAGA+CGG | 0.644789 | 5.4:+75568766 | None:intergenic |
| AGCAAGGCGAATCGACAACA+CGG | 0.645318 | 5.4:+75567650 | None:intergenic |
| TGTGGGAGTCCCAAGCTGGT+GGG | 0.646830 | 5.4:-75568890 | MS.gene020833:CDS |
| GCATCAGCTTCCTCCAATGG+TGG | 0.651686 | 5.4:+75567292 | None:intergenic |
| CCCCGAGAACCCCATAATGG+AGG | 0.653113 | 5.4:-75567509 | MS.gene020833:CDS |
| AAGGTGATCAAGGAGGTGTT+GGG | 0.654251 | 5.4:-75567703 | MS.gene020833:CDS |
| TGATGACATGACCAGCCTCA+AGG | 0.657377 | 5.4:-75568007 | MS.gene020833:CDS |
| CCTAAGCTTCTCAAGGAAGG+GGG | 0.664638 | 5.4:+75567906 | None:intergenic |
| GTTGGACTGCCAACATGGAG+AGG | 0.668192 | 5.4:-75567606 | MS.gene020833:CDS |
| TATGTTACCAGGATGAAGGA+AGG | 0.670222 | 5.4:-75567982 | MS.gene020833:CDS |
| GGAAGCTGATGCTGATGCAG+AGG | 0.671926 | 5.4:-75567281 | MS.gene020833:CDS |
| ATGATGATGAACAGTATGTG+TGG | 0.676362 | 5.4:-75568908 | MS.gene020833:CDS |
| AGTTGTCCATGATGAAAACA+CGG | 0.681053 | 5.4:+75568322 | None:intergenic |
| TCACCAGTCACTAAACAGCA+AGG | 0.686068 | 5.4:+75567634 | None:intergenic |
| GAAGGGTATTGTGGACTCTG+AGG | 0.693168 | 5.4:-75568265 | MS.gene020833:CDS |
| CTTGAAGCTGGGTATCCATG+AGG | 0.697436 | 5.4:-75568088 | MS.gene020833:CDS |
| AATAACTCTCATCCTCAAGG+AGG | 0.699652 | 5.4:-75568814 | MS.gene020833:CDS |
| CTTGGTACCAGACCTAGCAA+TGG | 0.700707 | 5.4:+75569046 | None:intergenic |
| CAATTTCAAAGAAAAGCTCG+AGG | 0.701411 | 5.4:+75568160 | None:intergenic |
| TTTCATCATGGACAACTGTG+AGG | 0.702798 | 5.4:-75568316 | MS.gene020833:CDS |
| GAAGCCTGAGGAGATCACAA+AGG | 0.711808 | 5.4:-75568523 | MS.gene020833:CDS |
| TGATGATGAACAGTATGTGT+GGG | 0.717373 | 5.4:-75568907 | MS.gene020833:CDS |
| TATTTGGATGAGGAAGCCTG+AGG | 0.739589 | 5.4:-75568535 | MS.gene020833:CDS |
| TCTTTGCAAGGTGATCAAGG+AGG | 0.803604 | 5.4:-75567710 | MS.gene020833:CDS |
| TGTCCATGATGAAAACACGG+CGG | 0.827708 | 5.4:+75568325 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAATTCAATTTCAATT+TGG | + | chr5.4:75567758-75567777 | None:intergenic | 10.0% |
| !! | TTAAAATTCAATTTCAATTT+GGG | + | chr5.4:75567757-75567776 | None:intergenic | 10.0% |
| !!! | AAATTGAATTTTAATTAGTT+CGG | - | chr5.4:75567763-75567782 | MS.gene020833:CDS | 10.0% |
| !!! | GTATTATTTTATCAATTTTA+GGG | - | chr5.4:75567491-75567510 | MS.gene020833:CDS | 10.0% |
| !! | ACTTTCTTTCAAAAAATTAA+AGG | + | chr5.4:75567992-75568011 | None:intergenic | 15.0% |
| !! | TATAATTGTTACTAATACTT+TGG | - | chr5.4:75568056-75568075 | MS.gene020833:CDS | 15.0% |
| !!! | AATTCAATTCTAAAACTAAA+AGG | + | chr5.4:75567960-75567979 | None:intergenic | 15.0% |
| !!! | ATTCAATTCTAAAACTAAAA+GGG | + | chr5.4:75567959-75567978 | None:intergenic | 15.0% |
| !!! | GGTATTATTTTATCAATTTT+AGG | - | chr5.4:75567490-75567509 | MS.gene020833:CDS | 15.0% |
| !!! | TAACTCTTTAATTTTTTGTA+TGG | - | chr5.4:75567921-75567940 | MS.gene020833:CDS | 15.0% |
| !!! | TGATTTTGATGAATTTTTTT+CGG | - | chr5.4:75567453-75567472 | MS.gene020833:CDS | 15.0% |
| !!! | TTTTTTCTTTTTGTTTCTTA+GGG | - | chr5.4:75567401-75567420 | MS.gene020833:CDS | 15.0% |
| !!! | TTTTTTTCTTTTTGTTTCTT+AGG | - | chr5.4:75567400-75567419 | MS.gene020833:CDS | 15.0% |
| !! | AAAAAATAGATCACATGATT+AGG | + | chr5.4:75567806-75567825 | None:intergenic | 20.0% |
| !! | AAAAATAGATCACATGATTA+GGG | + | chr5.4:75567805-75567824 | None:intergenic | 20.0% |
| !! | GTTAATTGAATATGTTGTTA+GGG | - | chr5.4:75567519-75567538 | MS.gene020833:CDS | 20.0% |
| !! | GTTGTTCTGATTATTATATT+GGG | - | chr5.4:75568144-75568163 | MS.gene020833:CDS | 20.0% |
| !! | TCAACTATGAAACATATATT+CGG | + | chr5.4:75567708-75567727 | None:intergenic | 20.0% |
| !! | TGTTAATTGAATATGTTGTT+AGG | - | chr5.4:75567518-75567537 | MS.gene020833:CDS | 20.0% |
| !! | TGTTGTTCTGATTATTATAT+TGG | - | chr5.4:75568143-75568162 | MS.gene020833:CDS | 20.0% |
| !!! | TTTTTGAAAGAAAGTTGTTT+GGG | - | chr5.4:75567997-75568016 | MS.gene020833:CDS | 20.0% |
| !!! | TTTTTTGAAAGAAAGTTGTT+TGG | - | chr5.4:75567996-75568015 | MS.gene020833:CDS | 20.0% |
| ! | AATGACATTTACTACATTAC+CGG | - | chr5.4:75569544-75569563 | MS.gene020833:intron | 25.0% |
| ! | AATGATGATTTAGTTGTTGT+GGG | - | chr5.4:75568114-75568133 | MS.gene020833:CDS | 25.0% |
| ! | ATTTCTCTTGAAATGTTAAG+TGG | + | chr5.4:75569265-75569284 | None:intergenic | 25.0% |
| ! | GAAGAAAAAGAAGAAGATTA+AGG | - | chr5.4:75568901-75568920 | MS.gene020833:CDS | 25.0% |
| ! | TAATGATGATTTAGTTGTTG+TGG | - | chr5.4:75568113-75568132 | MS.gene020833:CDS | 25.0% |
| !! | GTTATTGTCAATGTTATTTG+AGG | - | chr5.4:75568033-75568052 | MS.gene020833:CDS | 25.0% |
| !! | TTTTCGGTTATGATTCTTAT+TGG | - | chr5.4:75567469-75567488 | MS.gene020833:CDS | 25.0% |
| !!! | ATGATTTGTTAGTCATGTTT+AGG | - | chr5.4:75567607-75567626 | MS.gene020833:CDS | 25.0% |
| !!! | GTTTTAGAATTGAATTTGCA+TGG | - | chr5.4:75567964-75567983 | MS.gene020833:CDS | 25.0% |
| AAAAGAAAAAAAGAGCGAAG+AGG | + | chr5.4:75567392-75567411 | None:intergenic | 30.0% | |
| AATCTCCTTGTTACTGTAAA+AGG | + | chr5.4:75567325-75567344 | None:intergenic | 30.0% | |
| AGATTACAACAAGTTCTATG+AGG | - | chr5.4:75569375-75569394 | MS.gene020833:intron | 30.0% | |
| ATAATGTGAATGAACAACTC+TGG | + | chr5.4:75568241-75568260 | None:intergenic | 30.0% | |
| CTGTATTTATGTTCCAGATT+TGG | - | chr5.4:75568415-75568434 | MS.gene020833:CDS | 30.0% | |
| GAAAAAGAAGAAGATTAAGG+AGG | - | chr5.4:75568904-75568923 | MS.gene020833:CDS | 30.0% | |
| TAAAATAACTCTCATCCTCA+AGG | - | chr5.4:75568682-75568701 | MS.gene020833:CDS | 30.0% | |
| TAGCTATCCAATTTCTCTTT+GGG | - | chr5.4:75568772-75568791 | MS.gene020833:CDS | 30.0% | |
| TCAACAGAACAAGATTCTTA+AGG | - | chr5.4:75569288-75569307 | MS.gene020833:CDS | 30.0% | |
| TGAGGATGAAAAGAAAAAGA+TGG | - | chr5.4:75569741-75569760 | MS.gene020833:intron | 30.0% | |
| TTAGCTATCCAATTTCTCTT+TGG | - | chr5.4:75568771-75568790 | MS.gene020833:CDS | 30.0% | |
| TTTGTGTCAAAGAGATCAAA+AGG | + | chr5.4:75569124-75569143 | None:intergenic | 30.0% | |
| ! | GAATATGTTGTTAGGGTTTT+GGG | - | chr5.4:75567526-75567545 | MS.gene020833:CDS | 30.0% |
| ! | TACTGTGTAACATTTTCACT+TGG | - | chr5.4:75567829-75567848 | MS.gene020833:CDS | 30.0% |
| ! | TGAATATGTTGTTAGGGTTT+TGG | - | chr5.4:75567525-75567544 | MS.gene020833:CDS | 30.0% |
| !! | ACTATCATTGATAGTGGAAT+TGG | - | chr5.4:75568286-75568305 | MS.gene020833:CDS | 30.0% |
| !! | ATACTTTGGAATATCAGTGT+TGG | - | chr5.4:75568070-75568089 | MS.gene020833:CDS | 30.0% |
| !! | GAATATCAGTGTTGGATTTT+TGG | - | chr5.4:75568078-75568097 | MS.gene020833:CDS | 30.0% |
| ACAAGATTCTTAAGGTCATC+AGG | - | chr5.4:75569296-75569315 | MS.gene020833:CDS | 35.0% | |
| ACATACAGCTTGATGTTGTT+GGG | + | chr5.4:75569154-75569173 | None:intergenic | 35.0% | |
| ACCAACAGCATATTCATCAA+TGG | + | chr5.4:75569653-75569672 | None:intergenic | 35.0% | |
| ACCTTGACTATCATTGATAG+TGG | - | chr5.4:75568280-75568299 | MS.gene020833:CDS | 35.0% | |
| AGTAGATGAGGAGAAAGAAA+AGG | - | chr5.4:75568874-75568893 | MS.gene020833:CDS | 35.0% | |
| AGTTGTCCATGATGAAAACA+CGG | + | chr5.4:75569180-75569199 | None:intergenic | 35.0% | |
| ATATTGGGATGCTGTAATGT+AGG | - | chr5.4:75568159-75568178 | MS.gene020833:CDS | 35.0% | |
| CAATTTCAAAGAAAAGCTCG+AGG | + | chr5.4:75569342-75569361 | None:intergenic | 35.0% | |
| CATAAACCAATTACAGACTC+AGG | + | chr5.4:75568347-75568366 | None:intergenic | 35.0% | |
| CTTCACAAAGCTAAGATACT+CGG | + | chr5.4:75569218-75569237 | None:intergenic | 35.0% | |
| GAAAAAGATGGAAGAACAGA+AGG | - | chr5.4:75569753-75569772 | MS.gene020833:intron | 35.0% | |
| GGGATATGAAGTGATTTACA+TGG | - | chr5.4:75569621-75569640 | MS.gene020833:intron | 35.0% | |
| TAGTGTCTGCAACTAAAGAA+GGG | - | chr5.4:75569701-75569720 | MS.gene020833:intron | 35.0% | |
| TCCACTATCAATGATAGTCA+AGG | + | chr5.4:75568284-75568303 | None:intergenic | 35.0% | |
| TTCACAAAGCTAAGATACTC+GGG | + | chr5.4:75569217-75569236 | None:intergenic | 35.0% | |
| TTCTCAACCCAAAGAGAAAT+TGG | + | chr5.4:75568782-75568801 | None:intergenic | 35.0% | |
| ! | ATGATGATGAACAGTATGTG+TGG | - | chr5.4:75568591-75568610 | MS.gene020833:CDS | 35.0% |
| ! | CAACACCTTTTACAGTAACA+AGG | - | chr5.4:75567317-75567336 | MS.gene020833:CDS | 35.0% |
| ! | CTTTTTCCTGAGTCTGTAAT+TGG | - | chr5.4:75568338-75568357 | MS.gene020833:CDS | 35.0% |
| ! | GAAAGAGATTTCTGATGATG+AGG | - | chr5.4:75568811-75568830 | MS.gene020833:CDS | 35.0% |
| ! | TGATGATGAACAGTATGTGT+GGG | - | chr5.4:75568592-75568611 | MS.gene020833:CDS | 35.0% |
| ! | TTCTCTAAGAACTTGAAGCT+GGG | - | chr5.4:75569400-75569419 | MS.gene020833:intron | 35.0% |
| ! | TTGGATAAGATCCGTTTTGA+GGG | - | chr5.4:75568184-75568203 | MS.gene020833:CDS | 35.0% |
| ! | TTTGGATAAGATCCGTTTTG+AGG | - | chr5.4:75568183-75568202 | MS.gene020833:CDS | 35.0% |
| !! | AATGATAGTCAAGGTGTTGT+TGG | + | chr5.4:75568275-75568294 | None:intergenic | 35.0% |
| !! | CTTTGAAATTGCTGAGAACA+AGG | - | chr5.4:75569351-75569370 | MS.gene020833:intron | 35.0% |
| !! | GAGTATCTTAGCTTTGTGAA+GGG | - | chr5.4:75569217-75569236 | MS.gene020833:CDS | 35.0% |
| !! | TTAAGGAGGTGTCTAATGAA+TGG | - | chr5.4:75568918-75568937 | MS.gene020833:CDS | 35.0% |
| !!! | TCTTGTTTTGAGAATCCTCA+TGG | + | chr5.4:75569429-75569448 | None:intergenic | 35.0% |
| AACAGCTTTCTTGCTTTCAC+CGG | + | chr5.4:75569566-75569585 | None:intergenic | 40.0% | |
| AATAACTCTCATCCTCAAGG+AGG | - | chr5.4:75568685-75568704 | MS.gene020833:CDS | 40.0% | |
| ACAAGAGTCTCACCAATGAT+TGG | - | chr5.4:75569017-75569036 | MS.gene020833:CDS | 40.0% | |
| ATATGCTGTTGGTCAACTCA+AGG | - | chr5.4:75569660-75569679 | MS.gene020833:intron | 40.0% | |
| CAAATGCTCTTCCCAATCAT+TGG | + | chr5.4:75569032-75569051 | None:intergenic | 40.0% | |
| CAAGAGTCTCACCAATGATT+GGG | - | chr5.4:75569018-75569037 | MS.gene020833:CDS | 40.0% | |
| CAATCTTTGCAAGGTGATCA+AGG | - | chr5.4:75569786-75569805 | MS.gene020833:intron | 40.0% | |
| CAGGAATGACAAATCTGTCA+AGG | - | chr5.4:75570038-75570057 | MS.gene020833:intron | 40.0% | |
| CATGTCAAGCAAGAAGACAA+TGG | - | chr5.4:75569960-75569979 | MS.gene020833:intron | 40.0% | |
| CTAGTGTCTGCAACTAAAGA+AGG | - | chr5.4:75569700-75569719 | MS.gene020833:intron | 40.0% | |
| CTGTTCATCATCATTGTGCT+TGG | + | chr5.4:75568585-75568604 | None:intergenic | 40.0% | |
| CTTGAGAAGCTTAGGAAGAA+GGG | - | chr5.4:75569601-75569620 | MS.gene020833:intron | 40.0% | |
| GAAGAGGAAGAAGCTTACAT+CGG | + | chr5.4:75567376-75567395 | None:intergenic | 40.0% | |
| GAAGTTCGACAATCTTTGCA+AGG | - | chr5.4:75569777-75569796 | MS.gene020833:intron | 40.0% | |
| GACATACAGCTTGATGTTGT+TGG | + | chr5.4:75569155-75569174 | None:intergenic | 40.0% | |
| GCCATTGATGAATATGCTGT+TGG | - | chr5.4:75569649-75569668 | MS.gene020833:intron | 40.0% | |
| GGATCAACTTGAGTATCTTG+AGG | - | chr5.4:75568706-75568725 | MS.gene020833:CDS | 40.0% | |
| GGTCAACTCAAGGAATTTGA+GGG | - | chr5.4:75569670-75569689 | MS.gene020833:intron | 40.0% | |
| GGTGGTAACAATAACCTTCT+CGG | + | chr5.4:75568564-75568583 | None:intergenic | 40.0% | |
| GGTGTCTAATGAATGGTCTT+TGG | - | chr5.4:75568925-75568944 | MS.gene020833:CDS | 40.0% | |
| GTTAAGCACTTCTCTGTTGA+GGG | - | chr5.4:75569055-75569074 | MS.gene020833:CDS | 40.0% | |
| GTTAGCATGATTGGACAGTT+TGG | - | chr5.4:75568509-75568528 | MS.gene020833:CDS | 40.0% | |
| TAAGGTCATCAGGAAGAACT+TGG | - | chr5.4:75569306-75569325 | MS.gene020833:CDS | 40.0% | |
| TAAGGTTGAGGAAGTAGATG+AGG | - | chr5.4:75568862-75568881 | MS.gene020833:CDS | 40.0% | |
| TATGGCTTCCATGAATTCCT+TGG | + | chr5.4:75568474-75568493 | None:intergenic | 40.0% | |
| TATGTTACCAGGATGAAGGA+AGG | - | chr5.4:75569517-75569536 | MS.gene020833:intron | 40.0% | |
| TCATGCTAACTTACCAGCTT+TGG | + | chr5.4:75568317-75568336 | None:intergenic | 40.0% | |
| TCTCAAACAGCAAGAGAACA+AGG | + | chr5.4:75570065-75570084 | None:intergenic | 40.0% | |
| TCTTAACCAAGTCCTTCAGA+CGG | + | chr5.4:75568736-75568755 | None:intergenic | 40.0% | |
| TGAACAAGCAGAAGCCTATT+TGG | - | chr5.4:75568948-75568967 | MS.gene020833:CDS | 40.0% | |
| TGGTCAACTCAAGGAATTTG+AGG | - | chr5.4:75569669-75569688 | MS.gene020833:intron | 40.0% | |
| TGTTAAGCACTTCTCTGTTG+AGG | - | chr5.4:75569054-75569073 | MS.gene020833:CDS | 40.0% | |
| TGTTTAGTGACTGGTGAGTA+TGG | - | chr5.4:75569871-75569890 | MS.gene020833:intron | 40.0% | |
| TTCATCATCATTGTGCTTGG+TGG | + | chr5.4:75568582-75568601 | None:intergenic | 40.0% | |
| TTCCTAAGCTTCTCAAGGAA+GGG | + | chr5.4:75569598-75569617 | None:intergenic | 40.0% | |
| TTTCATCATGGACAACTGTG+AGG | - | chr5.4:75569183-75569202 | MS.gene020833:intron | 40.0% | |
| ! | AATCCTGTTGCCAAAAGTGT+TGG | + | chr5.4:75570124-75570143 | None:intergenic | 40.0% |
| ! | AGAATCAAGCTTGCTCTTGT+CGG | + | chr5.4:75568215-75568234 | None:intergenic | 40.0% |
| ! | CAGCTTCAAGTTCTTAGAGA+AGG | + | chr5.4:75569401-75569420 | None:intergenic | 40.0% |
| ! | CTTCTCTAAGAACTTGAAGC+TGG | - | chr5.4:75569399-75569418 | MS.gene020833:intron | 40.0% |
| !! | AGATCAAAAGGTGCTCTCTT+CGG | + | chr5.4:75569112-75569131 | None:intergenic | 40.0% |
| !! | ATCCTGTTGCCAAAAGTGTT+GGG | + | chr5.4:75570123-75570142 | None:intergenic | 40.0% |
| !! | ATGATTGGACAGTTTGGTGT+TGG | - | chr5.4:75568515-75568534 | MS.gene020833:CDS | 40.0% |
| !! | CAATGATTGGGAAGAGCATT+TGG | - | chr5.4:75569030-75569049 | MS.gene020833:CDS | 40.0% |
| !! | CGAGTATCTTAGCTTTGTGA+AGG | - | chr5.4:75569216-75569235 | MS.gene020833:CDS | 40.0% |
| !! | TAGCTTTGTGAAGGGTATTG+TGG | - | chr5.4:75569225-75569244 | MS.gene020833:CDS | 40.0% |
| ACAACCTAGGTACCATTGCT+AGG | - | chr5.4:75568441-75568460 | MS.gene020833:CDS | 45.0% | |
| ACAAGAGACGTTTGCTTTCC+AGG | - | chr5.4:75567263-75567282 | MS.gene020833:CDS | 45.0% | |
| AGCAGAAGCCTATTTGGATG+AGG | - | chr5.4:75568954-75568973 | MS.gene020833:CDS | 45.0% | |
| ATTCACAGGATGCTCAAGCT+TGG | - | chr5.4:75570141-75570160 | MS.gene020833:intron | 45.0% | |
| ATTCTGTCCTTCCTTCATCC+TGG | + | chr5.4:75569527-75569546 | None:intergenic | 45.0% | |
| CAACATGGAGAGGATCATGA+AGG | - | chr5.4:75569903-75569922 | MS.gene020833:intron | 45.0% | |
| CAATAACCTTCTCGGCAACA+AGG | + | chr5.4:75568556-75568575 | None:intergenic | 45.0% | |
| CCTAGGTTGTTCACCAAATC+TGG | + | chr5.4:75568431-75568450 | None:intergenic | 45.0% | |
| CCTTCTTCCTAAGCTTCTCA+AGG | + | chr5.4:75569603-75569622 | None:intergenic | 45.0% | |
| CCTTGAGAAGCTTAGGAAGA+AGG | - | chr5.4:75569600-75569619 | MS.gene020833:intron | 45.0% | |
| CTTCATGATCCTCTCCATGT+TGG | + | chr5.4:75569905-75569924 | None:intergenic | 45.0% | |
| CTTCCTAAGCTTCTCAAGGA+AGG | + | chr5.4:75569599-75569618 | None:intergenic | 45.0% | |
| GAAGAGAAGAAGGAAGAGGA+GGG | - | chr5.4:75568839-75568858 | MS.gene020833:CDS | 45.0% | |
| GAGACTGCTCTTCTTACTTC+TGG | - | chr5.4:75570081-75570100 | MS.gene020833:intron | 45.0% | |
| GATACAACTGGTGAAGCTCT+TGG | - | chr5.4:75568650-75568669 | MS.gene020833:CDS | 45.0% | |
| GGAATTGGAATGACCAAAGC+TGG | - | chr5.4:75568301-75568320 | MS.gene020833:CDS | 45.0% | |
| GGACTATGTTACCAGGATGA+AGG | - | chr5.4:75569513-75569532 | MS.gene020833:intron | 45.0% | |
| GGATGCTGTAATGTAGGCTT+TGG | - | chr5.4:75568165-75568184 | MS.gene020833:CDS | 45.0% | |
| GTCTGGTACCAAGGAATTCA+TGG | - | chr5.4:75568463-75568482 | MS.gene020833:CDS | 45.0% | |
| GTTGAAACTTGACGAGAGTG+AGG | - | chr5.4:75569723-75569742 | MS.gene020833:intron | 45.0% | |
| TAGTGACTGGTGAGTATGGT+TGG | - | chr5.4:75569875-75569894 | MS.gene020833:intron | 45.0% | |
| TATTTGGATGAGGAAGCCTG+AGG | - | chr5.4:75568964-75568983 | MS.gene020833:CDS | 45.0% | |
| TCACCAGTCACTAAACAGCA+AGG | + | chr5.4:75569868-75569887 | None:intergenic | 45.0% | |
| TCAGGCTTCCTCATCCAAAT+AGG | + | chr5.4:75568965-75568984 | None:intergenic | 45.0% | |
| TCCTAAGCTTCTCAAGGAAG+GGG | + | chr5.4:75569597-75569616 | None:intergenic | 45.0% | |
| TCCTGGTAACATAGTCCTTG+AGG | + | chr5.4:75569510-75569529 | None:intergenic | 45.0% | |
| TCTTTGCAAGGTGATCAAGG+AGG | - | chr5.4:75569789-75569808 | MS.gene020833:intron | 45.0% | |
| TGAGGGACAGTTGGAGTTTA+AGG | - | chr5.4:75569072-75569091 | MS.gene020833:intron | 45.0% | |
| TGTCCATGATGAAAACACGG+CGG | + | chr5.4:75569177-75569196 | None:intergenic | 45.0% | |
| TTCCTCAGCTCCTCCATTAT+GGG | + | chr5.4:75570003-75570022 | None:intergenic | 45.0% | |
| TTTCCTCAGCTCCTCCATTA+TGG | + | chr5.4:75570004-75570023 | None:intergenic | 45.0% | |
| ! | CTTGATGAGCCCAACACTTT+TGG | - | chr5.4:75570111-75570130 | MS.gene020833:intron | 45.0% |
| ! | CTTTTGGCAACAGGATTCAC+AGG | - | chr5.4:75570127-75570146 | MS.gene020833:intron | 45.0% |
| ! | GAAGTTGATTGATCTCAGCC+TGG | + | chr5.4:75567284-75567303 | None:intergenic | 45.0% |
| ! | GATTTCTGATGATGAGGACG+AGG | - | chr5.4:75568817-75568836 | MS.gene020833:CDS | 45.0% |
| !! | AAGGTGATCAAGGAGGTGTT+GGG | - | chr5.4:75569796-75569815 | MS.gene020833:intron | 45.0% |
| !! | AAGGTGTTGTTGGTCTTGTC+AGG | + | chr5.4:75568265-75568284 | None:intergenic | 45.0% |
| !! | ACTCAAGTTGATCCTCCTTG+AGG | + | chr5.4:75568700-75568719 | None:intergenic | 45.0% |
| !! | CAAAAGTGTTGGGCTCATCA+AGG | + | chr5.4:75570113-75570132 | None:intergenic | 45.0% |
| !! | CAAAGCTTGCTGATTTGCTC+AGG | - | chr5.4:75569449-75569468 | MS.gene020833:intron | 45.0% |
| !! | CCAGATTTGGTGAACAACCT+AGG | - | chr5.4:75568428-75568447 | MS.gene020833:CDS | 45.0% |
| !! | GCTTGGTCTTAGCATTGATG+AGG | - | chr5.4:75570158-75570177 | MS.gene020833:CDS | 45.0% |
| !! | GGTGCTGATGTTAGCATGAT+TGG | - | chr5.4:75568500-75568519 | MS.gene020833:CDS | 45.0% |
| AACATCAGCACCAGCAGCTA+TGG | + | chr5.4:75568492-75568511 | None:intergenic | 50.0% | |
| AACTGGTGAAGCTCTTGGCA+GGG | - | chr5.4:75568655-75568674 | MS.gene020833:CDS | 50.0% | |
| ACTGTGACCAGGGATACAAC+TGG | - | chr5.4:75568638-75568657 | MS.gene020833:CDS | 50.0% | |
| AGAGGGAAGCAAGATGGAAG+AGG | - | chr5.4:75570236-75570255 | MS.gene020833:CDS | 50.0% | |
| AGCAAGGCGAATCGACAACA+CGG | + | chr5.4:75569852-75569871 | None:intergenic | 50.0% | |
| AGCTTCACCAGTTGTATCCC+TGG | + | chr5.4:75568648-75568667 | None:intergenic | 50.0% | |
| AGTGAATGACCCACCAGCTT+GGG | + | chr5.4:75568621-75568640 | None:intergenic | 50.0% | |
| CAGACCTAGCAATGGTACCT+AGG | + | chr5.4:75568448-75568467 | None:intergenic | 50.0% | |
| CATGTCATCACCACTCTTGG+TGG | + | chr5.4:75569482-75569501 | None:intergenic | 50.0% | |
| CATTGCTAGGTCTGGTACCA+AGG | - | chr5.4:75568454-75568473 | MS.gene020833:CDS | 50.0% | |
| CCTAAGCTTCTCAAGGAAGG+GGG | + | chr5.4:75569596-75569615 | None:intergenic | 50.0% | |
| CGAGGAAGAGAAGAAGGAAG+AGG | - | chr5.4:75568835-75568854 | MS.gene020833:CDS | 50.0% | |
| CTAGGTACCATTGCTAGGTC+TGG | - | chr5.4:75568446-75568465 | MS.gene020833:CDS | 50.0% | |
| CTCCTCCATTATGGGGTTCT+CGG | + | chr5.4:75569995-75570014 | None:intergenic | 50.0% | |
| CTTCTCTGTTGAGGGACAGT+TGG | - | chr5.4:75569063-75569082 | MS.gene020833:CDS | 50.0% | |
| CTTGAAGCTGGGTATCCATG+AGG | - | chr5.4:75569411-75569430 | MS.gene020833:intron | 50.0% | |
| CTTGGTACCAGACCTAGCAA+TGG | + | chr5.4:75568456-75568475 | None:intergenic | 50.0% | |
| GAAGAAGGAAGAGGAGGGTA+AGG | - | chr5.4:75568844-75568863 | MS.gene020833:CDS | 50.0% | |
| GAAGCCTGAGGAGATCACAA+AGG | - | chr5.4:75568976-75568995 | MS.gene020833:CDS | 50.0% | |
| GAAGCTGATGCTGATGCAGA+GGG | - | chr5.4:75570219-75570238 | MS.gene020833:CDS | 50.0% | |
| GCCTCAAGGACTATGTTACC+AGG | - | chr5.4:75569506-75569525 | MS.gene020833:intron | 50.0% | |
| GGAAGAGAAGAAGGAAGAGG+AGG | - | chr5.4:75568838-75568857 | MS.gene020833:CDS | 50.0% | |
| GGGTGACAAGGTTGAGAAAG+TGG | - | chr5.4:75569816-75569835 | MS.gene020833:intron | 50.0% | |
| GGTAACATAGTCCTTGAGGC+TGG | + | chr5.4:75569506-75569525 | None:intergenic | 50.0% | |
| GGTCATGTCATCACCACTCT+TGG | + | chr5.4:75569485-75569504 | None:intergenic | 50.0% | |
| GTATGGTTGGACTGCCAACA+TGG | - | chr5.4:75569888-75569907 | MS.gene020833:intron | 50.0% | |
| TCAGCATCAGCTTCCTCCAA+TGG | + | chr5.4:75570213-75570232 | None:intergenic | 50.0% | |
| TCCTCAGCTCCTCCATTATG+GGG | + | chr5.4:75570002-75570021 | None:intergenic | 50.0% | |
| TCCTCCATTATGGGGTTCTC+GGG | + | chr5.4:75569994-75570013 | None:intergenic | 50.0% | |
| TCGTCCTTTGTGATCTCCTC+AGG | + | chr5.4:75568983-75569002 | None:intergenic | 50.0% | |
| TGAGGACGAGGAAGAGAAGA+AGG | - | chr5.4:75568829-75568848 | MS.gene020833:CDS | 50.0% | |
| TGATGACATGACCAGCCTCA+AGG | - | chr5.4:75569492-75569511 | MS.gene020833:intron | 50.0% | |
| TGATGCAGAGGGAAGCAAGA+TGG | - | chr5.4:75570230-75570249 | MS.gene020833:CDS | 50.0% | |
| TGATGCTGACATGCCACCAT+TGG | - | chr5.4:75570194-75570213 | MS.gene020833:CDS | 50.0% | |
| TGCTTACCTTGTTGCCGAGA+AGG | - | chr5.4:75568547-75568566 | MS.gene020833:CDS | 50.0% | |
| TGGGTCATTCACTGTGACCA+GGG | - | chr5.4:75568628-75568647 | MS.gene020833:CDS | 50.0% | |
| TGTCGGTCAAGCCCTCAAAA+CGG | + | chr5.4:75568198-75568217 | None:intergenic | 50.0% | |
| TTCATGGAAGCCATAGCTGC+TGG | - | chr5.4:75568479-75568498 | MS.gene020833:CDS | 50.0% | |
| ! | AGCCCAACACTTTTGGCAAC+AGG | - | chr5.4:75570118-75570137 | MS.gene020833:intron | 50.0% |
| ! | CAAGGTGATCAAGGAGGTGT+TGG | - | chr5.4:75569795-75569814 | MS.gene020833:intron | 50.0% |
| ! | CATGAAGGCACAGGCTTTGA+GGG | - | chr5.4:75569918-75569937 | MS.gene020833:intron | 50.0% |
| ! | TCATGAAGGCACAGGCTTTG+AGG | - | chr5.4:75569917-75569936 | MS.gene020833:intron | 50.0% |
| ! | TGTCCGCCGTGTTTTCATCA+TGG | - | chr5.4:75569171-75569190 | MS.gene020833:intron | 50.0% |
| !! | GAAGGGTATTGTGGACTCTG+AGG | - | chr5.4:75569234-75569253 | MS.gene020833:CDS | 50.0% |
| !! | TCGCCTTGCTGTTTAGTGAC+TGG | - | chr5.4:75569862-75569881 | MS.gene020833:intron | 50.0% |
| ACTGGTGAAGCTCTTGGCAG+GGG | - | chr5.4:75568656-75568675 | MS.gene020833:CDS | 55.0% | |
| AGGTACCACTCCACCAAGAG+TGG | - | chr5.4:75569469-75569488 | MS.gene020833:intron | 55.0% | |
| CAACCCCGAGAACCCCATAA+TGG | - | chr5.4:75569987-75570006 | MS.gene020833:intron | 55.0% | |
| CAACTGGTGAAGCTCTTGGC+AGG | - | chr5.4:75568654-75568673 | MS.gene020833:CDS | 55.0% | |
| CAGTGAATGACCCACCAGCT+TGG | + | chr5.4:75568622-75568641 | None:intergenic | 55.0% | |
| CATCACCACTCTTGGTGGAG+TGG | + | chr5.4:75569477-75569496 | None:intergenic | 55.0% | |
| CCCCCTTCCTTGAGAAGCTT+AGG | - | chr5.4:75569593-75569612 | MS.gene020833:intron | 55.0% | |
| CCTCCATTATGGGGTTCTCG+GGG | + | chr5.4:75569993-75570012 | None:intergenic | 55.0% | |
| GCATCAGCTTCCTCCAATGG+TGG | + | chr5.4:75570210-75570229 | None:intergenic | 55.0% | |
| GGAAGAGGAGGGTAAGGTTG+AGG | - | chr5.4:75568850-75568869 | MS.gene020833:CDS | 55.0% | |
| GGAAGCTGATGCTGATGCAG+AGG | - | chr5.4:75570218-75570237 | MS.gene020833:CDS | 55.0% | |
| GTGGGTCATTCACTGTGACC+AGG | - | chr5.4:75568627-75568646 | MS.gene020833:CDS | 55.0% | |
| GTTGGACTGCCAACATGGAG+AGG | - | chr5.4:75569893-75569912 | MS.gene020833:intron | 55.0% | |
| TATGTGTGGGAGTCCCAAGC+TGG | - | chr5.4:75568605-75568624 | MS.gene020833:CDS | 55.0% | |
| TCTTGAGGAACGCCGTCTGA+AGG | - | chr5.4:75568721-75568740 | MS.gene020833:CDS | 55.0% | |
| TGCTGACATGCCACCATTGG+AGG | - | chr5.4:75570197-75570216 | MS.gene020833:CDS | 55.0% | |
| TTGAGGGATAGCAGCATGGC+TGG | - | chr5.4:75569934-75569953 | MS.gene020833:intron | 55.0% | |
| ! | ACCCCATAATGGAGGAGCTG+AGG | - | chr5.4:75569998-75570017 | MS.gene020833:intron | 55.0% |
| ! | GCTGAGGAAACGTGCTGATG+CGG | - | chr5.4:75570014-75570033 | MS.gene020833:intron | 55.0% |
| ! | GGAGAGGATCATGAAGGCAC+AGG | - | chr5.4:75569909-75569928 | MS.gene020833:intron | 55.0% |
| !! | CAAGGAGGTGTTGGGTGACA+AGG | - | chr5.4:75569804-75569823 | MS.gene020833:intron | 55.0% |
| !! | GGCTTTGAGGGATAGCAGCA+TGG | - | chr5.4:75569930-75569949 | MS.gene020833:intron | 55.0% |
| CCCCGAGAACCCCATAATGG+AGG | - | chr5.4:75569990-75570009 | MS.gene020833:intron | 60.0% | |
| GGAACGCCGTCTGAAGGACT+TGG | - | chr5.4:75568727-75568746 | MS.gene020833:CDS | 60.0% | |
| TGTGGGAGTCCCAAGCTGGT+GGG | - | chr5.4:75568609-75568628 | MS.gene020833:CDS | 60.0% | |
| ! | GGAAACGTGCTGATGCGGAC+AGG | - | chr5.4:75570019-75570038 | MS.gene020833:intron | 60.0% |
| GTGTGGGAGTCCCAAGCTGG+TGG | - | chr5.4:75568608-75568627 | MS.gene020833:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 75567255 | 75570266 | 75567255 | ID=MS.gene020833 |
| chr5.4 | mRNA | 75567255 | 75570266 | 75567255 | ID=MS.gene020833.t1;Parent=MS.gene020833 |
| chr5.4 | exon | 75570144 | 75570266 | 75570144 | ID=MS.gene020833.t1.exon1;Parent=MS.gene020833.t1 |
| chr5.4 | CDS | 75570144 | 75570266 | 75570144 | ID=cds.MS.gene020833.t1;Parent=MS.gene020833.t1 |
| chr5.4 | exon | 75569199 | 75569340 | 75569199 | ID=MS.gene020833.t1.exon2;Parent=MS.gene020833.t1 |
| chr5.4 | CDS | 75569199 | 75569340 | 75569199 | ID=cds.MS.gene020833.t1;Parent=MS.gene020833.t1 |
| chr5.4 | exon | 75567255 | 75569089 | 75567255 | ID=MS.gene020833.t1.exon3;Parent=MS.gene020833.t1 |
| chr5.4 | CDS | 75567255 | 75569089 | 75567255 | ID=cds.MS.gene020833.t1;Parent=MS.gene020833.t1 |
| Gene Sequence |
| Protein sequence |
