Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37989.t1 | XP_004491530.1 | 97.6 | 699 | 17 | 0 | 1 | 699 | 1 | 699 | 0.00E+00 | 1244.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37989.t1 | P36181 | 93.0 | 699 | 49 | 0 | 1 | 699 | 1 | 699 | 0.0e+00 | 1198.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37989.t1 | A0A1S2XPL0 | 97.6 | 699 | 17 | 0 | 1 | 699 | 1 | 699 | 0.0e+00 | 1244.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene37989 | 0.823126 | 1.64E-53 | -1.69E-46 |
| MS.gene049166 | MS.gene37989 | 0.823374 | 1.43E-53 | -1.69E-46 |
| MS.gene04917 | MS.gene37989 | 0.8222 | 2.69E-53 | -1.69E-46 |
| MS.gene049786 | MS.gene37989 | 0.802458 | 5.56E-49 | -1.69E-46 |
| MS.gene04984 | MS.gene37989 | 0.809954 | 1.47E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene37989 | 0.809511 | 1.83E-50 | -1.69E-46 |
| MS.gene050317 | MS.gene37989 | 0.822849 | 1.90E-53 | -1.69E-46 |
| MS.gene050629 | MS.gene37989 | -0.816827 | 4.52E-52 | -1.69E-46 |
| MS.gene050654 | MS.gene37989 | 0.84973 | 2.68E-60 | -1.69E-46 |
| MS.gene050838 | MS.gene37989 | 0.810812 | 9.57E-51 | -1.69E-46 |
| MS.gene050941 | MS.gene37989 | 0.812763 | 3.60E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene37989 | 0.815956 | 7.09E-52 | -1.69E-46 |
| MS.gene051184 | MS.gene37989 | 0.801295 | 9.63E-49 | -1.69E-46 |
| MS.gene051831 | MS.gene37989 | 0.809282 | 2.04E-50 | -1.69E-46 |
| MS.gene052342 | MS.gene37989 | 0.825799 | 3.85E-54 | -1.69E-46 |
| MS.gene052434 | MS.gene37989 | 0.849048 | 4.15E-60 | -1.69E-46 |
| MS.gene053058 | MS.gene37989 | 0.82945 | 5.11E-55 | -1.69E-46 |
| MS.gene053381 | MS.gene37989 | 0.831266 | 1.84E-55 | -1.69E-46 |
| MS.gene055311 | MS.gene37989 | 0.845145 | 4.88E-59 | -1.69E-46 |
| MS.gene055313 | MS.gene37989 | 0.817977 | 2.49E-52 | -1.69E-46 |
| MS.gene055314 | MS.gene37989 | 0.817531 | 3.14E-52 | -1.69E-46 |
| MS.gene056045 | MS.gene37989 | 0.802345 | 5.86E-49 | -1.69E-46 |
| MS.gene056097 | MS.gene37989 | 0.811695 | 6.16E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene37989 | 0.840374 | 9.04E-58 | -1.69E-46 |
| MS.gene056752 | MS.gene37989 | 0.821307 | 4.33E-53 | -1.69E-46 |
| MS.gene056787 | MS.gene37989 | 0.817367 | 3.42E-52 | -1.69E-46 |
| MS.gene056849 | MS.gene37989 | 0.861548 | 9.50E-64 | -1.69E-46 |
| MS.gene057721 | MS.gene37989 | 0.841985 | 3.41E-58 | -1.69E-46 |
| MS.gene058081 | MS.gene37989 | 0.801651 | 8.14E-49 | -1.69E-46 |
| MS.gene058278 | MS.gene37989 | 0.832446 | 9.41E-56 | -1.69E-46 |
| MS.gene058646 | MS.gene37989 | 0.80119 | 1.01E-48 | -1.69E-46 |
| MS.gene058654 | MS.gene37989 | 0.807617 | 4.63E-50 | -1.69E-46 |
| MS.gene058758 | MS.gene37989 | 0.834889 | 2.31E-56 | -1.69E-46 |
| MS.gene059170 | MS.gene37989 | 0.834202 | 3.43E-56 | -1.69E-46 |
| MS.gene059290 | MS.gene37989 | 0.862717 | 4.16E-64 | -1.69E-46 |
| MS.gene06010 | MS.gene37989 | 0.830921 | 2.24E-55 | -1.69E-46 |
| MS.gene06011 | MS.gene37989 | 0.819464 | 1.15E-52 | -1.69E-46 |
| MS.gene060296 | MS.gene37989 | 0.81104 | 8.54E-51 | -1.69E-46 |
| MS.gene060563 | MS.gene37989 | 0.807054 | 6.10E-50 | -1.69E-46 |
| MS.gene060869 | MS.gene37989 | 0.863426 | 2.51E-64 | -1.69E-46 |
| MS.gene060870 | MS.gene37989 | 0.853513 | 2.27E-61 | -1.69E-46 |
| MS.gene060932 | MS.gene37989 | 0.831754 | 1.40E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene58998 | MS.gene37989 | PPI |
| MS.gene37989 | MS.gene75388 | PPI |
| MS.gene37989 | MS.gene38210 | PPI |
| MS.gene37989 | MS.gene020834 | PPI |
| MS.gene37989 | MS.gene60613 | PPI |
| MS.gene24136 | MS.gene37989 | PPI |
| MS.gene37988 | MS.gene37989 | PPI |
| MS.gene37989 | MS.gene020833 | PPI |
| MS.gene37989 | MS.gene62123 | PPI |
| MS.gene37989 | MS.gene64023 | PPI |
| MS.gene37989 | MS.gene061126 | PPI |
| MS.gene37989 | MS.gene37988 | PPI |
| MS.gene37989 | MS.gene38261 | PPI |
| MS.gene37989 | MS.gene006231 | PPI |
| MS.gene37989 | MS.gene029690 | PPI |
| MS.gene37989 | MS.gene64024 | PPI |
| MS.gene37989 | MS.gene30654 | PPI |
| MS.gene37989 | MS.gene27084 | PPI |
| MS.gene37989 | MS.gene81285 | PPI |
| MS.gene37989 | MS.gene38049 | PPI |
| MS.gene37989 | MS.gene75389 | PPI |
| MS.gene37989 | MS.gene81288 | PPI |
| MS.gene37989 | MS.gene020886 | PPI |
| MS.gene37989 | MS.gene49154 | PPI |
| MS.gene37989 | MS.gene040499 | PPI |
| MS.gene81288 | MS.gene37989 | PPI |
| MS.gene37989 | MS.gene64225 | PPI |
| MS.gene81227 | MS.gene37989 | PPI |
| MS.gene37989 | MS.gene62607 | PPI |
| MS.gene37989 | MS.gene38262 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37989.t1 | MTR_5g096430 | 99.857 | 699 | 1 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1419 |
| MS.gene37989.t1 | MTR_5g096460 | 99.857 | 699 | 1 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1419 |
| MS.gene37989.t1 | MTR_6g452990 | 88.160 | 701 | 79 | 3 | 1 | 699 | 1 | 699 | 0.0 | 1186 |
| MS.gene37989.t1 | MTR_1g099840 | 84.692 | 699 | 92 | 2 | 1 | 699 | 6 | 689 | 0.0 | 1146 |
| MS.gene37989.t1 | MTR_1g025430 | 48.867 | 706 | 320 | 8 | 5 | 673 | 78 | 779 | 0.0 | 642 |
| MS.gene37989.t1 | MTR_5g097320 | 45.562 | 676 | 345 | 10 | 5 | 667 | 90 | 755 | 0.0 | 577 |
| MS.gene37989.t1 | MTR_0009s0390 | 45.634 | 710 | 354 | 13 | 5 | 698 | 82 | 775 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37989.t1 | AT5G56000 | 90.714 | 700 | 63 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1205 |
| MS.gene37989.t1 | AT5G56030 | 92.286 | 700 | 52 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1196 |
| MS.gene37989.t1 | AT5G56010 | 92.000 | 700 | 54 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1194 |
| MS.gene37989.t1 | AT5G56030 | 88.615 | 729 | 52 | 3 | 1 | 699 | 1 | 728 | 0.0 | 1181 |
| MS.gene37989.t1 | AT5G52640 | 85.185 | 702 | 99 | 5 | 1 | 699 | 1 | 700 | 0.0 | 1148 |
| MS.gene37989.t1 | AT4G24190 | 50.356 | 703 | 310 | 8 | 5 | 672 | 77 | 775 | 0.0 | 643 |
| MS.gene37989.t1 | AT4G24190 | 50.356 | 703 | 310 | 8 | 5 | 672 | 77 | 775 | 0.0 | 642 |
| MS.gene37989.t1 | AT2G04030 | 47.485 | 676 | 329 | 11 | 5 | 668 | 77 | 738 | 0.0 | 597 |
| MS.gene37989.t1 | AT3G07770 | 45.495 | 677 | 346 | 10 | 5 | 668 | 95 | 761 | 0.0 | 590 |
| MS.gene37989.t1 | AT3G07770 | 45.495 | 677 | 346 | 10 | 5 | 668 | 95 | 761 | 0.0 | 590 |
| MS.gene37989.t1 | AT3G07770 | 45.495 | 677 | 346 | 10 | 5 | 668 | 95 | 761 | 0.0 | 590 |
| MS.gene37989.t1 | AT2G04030 | 47.033 | 674 | 332 | 11 | 5 | 668 | 77 | 735 | 0.0 | 588 |
Find 174 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGGTCAGTTGGAGTTTA+AGG | 0.170053 | 5.1:-76883500 | MS.gene37989:CDS |
| GAGACTGCTCTTCTTACTTC+TGG | 0.243959 | 5.1:-76882491 | MS.gene37989:CDS |
| TTCTCAACCCAAAGAGAAAT+TGG | 0.256773 | 5.1:+76883793 | None:intergenic |
| TGAACAAGCAGAAGCCTATT+TGG | 0.260701 | 5.1:-76883624 | MS.gene37989:CDS |
| TTAGCTATCCAATTTCTCTT+TGG | 0.269210 | 5.1:-76883801 | MS.gene37989:CDS |
| CTTGATGAGCCCAACACTTT+TGG | 0.271765 | 5.1:-76882461 | MS.gene37989:CDS |
| TAGCTATCCAATTTCTCTTT+GGG | 0.282969 | 5.1:-76883800 | MS.gene37989:CDS |
| ACAAGAGACGTTCGCTTTCC+AGG | 0.298645 | 5.1:-76885259 | MS.gene37989:CDS |
| ACTCAAGTTGATCCTCCTTT+AGG | 0.313372 | 5.1:+76883875 | None:intergenic |
| TCCTCCATGATGGGATTCTC+AGG | 0.339757 | 5.1:+76882581 | None:intergenic |
| CAATGATTGGGAAGAGCATT+TGG | 0.340719 | 5.1:-76883542 | MS.gene37989:CDS |
| TGTTTAGTGACTGGTGAGTA+TGG | 0.358330 | 5.1:-76882701 | MS.gene37989:CDS |
| GACATACAGCTTGATGTTGT+TGG | 0.373069 | 5.1:+76883420 | None:intergenic |
| AAACGTTAGCTTACCAGCTT+TGG | 0.375649 | 5.1:+76884253 | None:intergenic |
| GTCTGGTACCAAGGAATTCA+TGG | 0.376590 | 5.1:-76884109 | MS.gene37989:CDS |
| AATGACATTTACTACATTAC+CGG | 0.381181 | 5.1:-76883028 | MS.gene37989:CDS |
| AGTTCTTCCTGATGACCTTA+AGG | 0.384170 | 5.1:+76883269 | None:intergenic |
| ACAAGAGTCTCACCAATGAT+TGG | 0.384273 | 5.1:-76883555 | MS.gene37989:CDS |
| TGAGTATCTTAGCTTTGTTA+AGG | 0.384871 | 5.1:-76883356 | MS.gene37989:CDS |
| TCTGGCTTCCTCATCCAAAT+AGG | 0.390372 | 5.1:+76883610 | None:intergenic |
| ACATACAGCTTGATGTTGTT+GGG | 0.394439 | 5.1:+76883421 | None:intergenic |
| GAGATCAAAAGGTGCTCTCT+TGG | 0.403770 | 5.1:+76883462 | None:intergenic |
| AAAGTGTTGTTGGTCTTGTC+AGG | 0.406501 | 5.1:+76884305 | None:intergenic |
| AATGATAGTCAAAGTGTTGT+TGG | 0.411318 | 5.1:+76884295 | None:intergenic |
| TCATCCTTTGTAATCTCCTC+TGG | 0.414109 | 5.1:+76883592 | None:intergenic |
| GAAGAAGGAAGAGGAGGGTA+AGG | 0.417477 | 5.1:-76883728 | MS.gene37989:CDS |
| ACTATCATTGATAGTGGCAT+TGG | 0.423433 | 5.1:-76884281 | MS.gene37989:CDS |
| GTGAGTATGATTGGACAGTT+TGG | 0.425748 | 5.1:-76884063 | MS.gene37989:CDS |
| CGAGGAAGAGAAGAAGGAAG+AGG | 0.429375 | 5.1:-76883737 | MS.gene37989:CDS |
| GGTCATGTCATCACCACTCT+TGG | 0.434025 | 5.1:+76883090 | None:intergenic |
| GGAAGAGGAGGGTAAGGTTG+AGG | 0.435286 | 5.1:-76883722 | MS.gene37989:CDS |
| CTTCTCTGTTGAGGGTCAGT+TGG | 0.437261 | 5.1:-76883509 | MS.gene37989:CDS |
| ACAAGATCCTTAAGGTCATC+AGG | 0.437555 | 5.1:-76883276 | MS.gene37989:CDS |
| GAGTATCTTAGCTTTGTTAA+GGG | 0.438963 | 5.1:-76883355 | MS.gene37989:CDS |
| CATGAAGGCACAAGCTTTGA+GGG | 0.445178 | 5.1:-76882654 | MS.gene37989:CDS |
| TTTGTGTCAAAGAGATCAAA+AGG | 0.446679 | 5.1:+76883451 | None:intergenic |
| GTTAAGCACTTCTCTGTTGA+GGG | 0.447502 | 5.1:-76883517 | MS.gene37989:CDS |
| CTAGTGTCTGCAACTAAAGA+AGG | 0.450314 | 5.1:-76882872 | MS.gene37989:CDS |
| ACTTTGACTATCATTGATAG+TGG | 0.450944 | 5.1:-76884287 | MS.gene37989:CDS |
| CCTTGAGAAGCTTAGGAAGA+AGG | 0.459680 | 5.1:-76882972 | MS.gene37989:CDS |
| CAAGAGTCTCACCAATGATT+GGG | 0.462392 | 5.1:-76883554 | MS.gene37989:CDS |
| CAAATGCTCTTCCCAATCAT+TGG | 0.463958 | 5.1:+76883543 | None:intergenic |
| TATAGCTTCCATGAATTCCT+TGG | 0.467031 | 5.1:+76884101 | None:intergenic |
| TGGTCAGCTCAAGGAATTTG+AGG | 0.468755 | 5.1:-76882903 | MS.gene37989:CDS |
| TGCTTACCTTGTTGCTGAGA+AGG | 0.468853 | 5.1:-76884025 | MS.gene37989:CDS |
| TGTTAAGCACTTCTCTGTTG+AGG | 0.472630 | 5.1:-76883518 | MS.gene37989:CDS |
| TTCCTCAGCTCCTCCATGAT+GGG | 0.474148 | 5.1:+76882572 | None:intergenic |
| AGTAGACGAGGAGAAAGAAA+AGG | 0.477035 | 5.1:-76883698 | MS.gene37989:CDS |
| TTTCTCTAAGAACTTGAAGC+TGG | 0.477075 | 5.1:-76883173 | MS.gene37989:CDS |
| GGTGCTGATGTGAGTATGAT+TGG | 0.477447 | 5.1:-76884072 | MS.gene37989:CDS |
| TTGAGGGATAGCAGCATGGC+TGG | 0.477457 | 5.1:-76882638 | MS.gene37989:CDS |
| TCATGAAGGCACAAGCTTTG+AGG | 0.479345 | 5.1:-76882655 | MS.gene37989:CDS |
| AGTGAATGACCCACCAGCTT+GGG | 0.479426 | 5.1:+76883954 | None:intergenic |
| AGATCAAAAGGTGCTCTCTT+GGG | 0.479988 | 5.1:+76883463 | None:intergenic |
| TGAGGACGAGGAAGAGAAGA+AGG | 0.480741 | 5.1:-76883743 | MS.gene37989:CDS |
| AGAATCAAGCTTGCTCTTGT+CGG | 0.482487 | 5.1:+76884355 | None:intergenic |
| TAGCTTTGTTAAGGGTATTG+TGG | 0.484688 | 5.1:-76883347 | MS.gene37989:CDS |
| CTTTGAAATTGCTGAGAACA+AGG | 0.486596 | 5.1:-76883221 | MS.gene37989:CDS |
| GGAAGAGAAGAAGGAAGAGG+AGG | 0.487208 | 5.1:-76883734 | MS.gene37989:CDS |
| CATGTCATCACCACTCTTGG+TGG | 0.488480 | 5.1:+76883093 | None:intergenic |
| ATTCTGTCCTTCCTTCATCC+TGG | 0.488551 | 5.1:+76883048 | None:intergenic |
| CTAAGCTTGCTGATTTGCTC+AGG | 0.489387 | 5.1:-76883123 | MS.gene37989:CDS |
| TCAACAGAACAAGATCCTTA+AGG | 0.489546 | 5.1:-76883284 | MS.gene37989:CDS |
| GGTGTCTAATGAATGGTCTT+TGG | 0.492991 | 5.1:-76883647 | MS.gene37989:CDS |
| ATGATTGGACAGTTTGGTGT+TGG | 0.493545 | 5.1:-76884057 | MS.gene37989:CDS |
| GGAACGCCGTCTGAAGGACT+TGG | 0.493605 | 5.1:-76883845 | MS.gene37989:CDS |
| AACAGCTTTCTTGCTTTCAC+CGG | 0.494202 | 5.1:+76883009 | None:intergenic |
| TAAAATAACTCTCATCCTAA+AGG | 0.494415 | 5.1:-76883890 | MS.gene37989:CDS |
| CTTCCTAAGCTTCTCAAGGA+AGG | 0.495109 | 5.1:+76882976 | None:intergenic |
| CAATCTTTGCAAGGTGATCA+AGG | 0.496155 | 5.1:-76882786 | MS.gene37989:CDS |
| GGCATTGGAATGACCAAAGC+TGG | 0.498686 | 5.1:-76884266 | MS.gene37989:intron |
| GGGTGACAAGGTTGAGAAAG+TGG | 0.499707 | 5.1:-76882756 | MS.gene37989:CDS |
| ATCTCTCTTGAAATGTTAAG+TGG | 0.500434 | 5.1:+76883310 | None:intergenic |
| TTCGTCATCATTGTGCTTGG+TGG | 0.500444 | 5.1:+76883993 | None:intergenic |
| CTAGGTACCATTGCTAGGTC+TGG | 0.502477 | 5.1:-76884126 | MS.gene37989:CDS |
| GAAGAGAAGAAGGAAGAGGA+GGG | 0.502813 | 5.1:-76883733 | MS.gene37989:CDS |
| GATACTACTGGTGAAGCTCT+TGG | 0.506627 | 5.1:-76883922 | MS.gene37989:CDS |
| TCTCCTTGCTGTTTAGTGAC+TGG | 0.506819 | 5.1:-76882710 | MS.gene37989:CDS |
| TTTCCTCAGCTCCTCCATGA+TGG | 0.507054 | 5.1:+76882571 | None:intergenic |
| CTTGAGAAGCTTAGGAAGAA+GGG | 0.508184 | 5.1:-76882971 | MS.gene37989:CDS |
| CAAGGTGATCAAGGAGGTGT+TGG | 0.509412 | 5.1:-76882777 | MS.gene37989:CDS |
| TTCCTAAGCTTCTCAAGGAA+GGG | 0.510661 | 5.1:+76882977 | None:intergenic |
| GTGGGTCATTCACTGTGACC+AGG | 0.512028 | 5.1:-76883945 | MS.gene37989:CDS |
| TCCTAAGCTTCTCAAGGAAG+GGG | 0.515007 | 5.1:+76882978 | None:intergenic |
| AGCTTCACCAGTAGTATCCC+TGG | 0.516220 | 5.1:+76883927 | None:intergenic |
| CTTCATGATCCTCTCCATGT+TGG | 0.521693 | 5.1:+76882670 | None:intergenic |
| TGCTGACATGCCACCATTGG+AGG | 0.530142 | 5.1:-76882375 | MS.gene37989:CDS |
| ATCCTGTTGCCAAAAGTGTT+GGG | 0.532827 | 5.1:+76882452 | None:intergenic |
| ATTCACAGGATGCTCAAGCT+TGG | 0.534491 | 5.1:-76882431 | MS.gene37989:CDS |
| TCAGCATCAGCTTCCTCCAA+TGG | 0.535356 | 5.1:+76882362 | None:intergenic |
| CATTGCTAGGTCTGGTACCA+AGG | 0.535688 | 5.1:-76884118 | MS.gene37989:CDS |
| TTAAGGAGGTGTCTAATGAA+TGG | 0.538054 | 5.1:-76883654 | MS.gene37989:CDS |
| TACTGGTGAAGCTCTTGGTA+GGG | 0.540570 | 5.1:-76883917 | MS.gene37989:CDS |
| TTCATGGAAGCTATAGCTGC+TGG | 0.543301 | 5.1:-76884093 | MS.gene37989:CDS |
| AATCCTGTTGCCAAAAGTGT+TGG | 0.544511 | 5.1:+76882451 | None:intergenic |
| TGATGCTGACATGCCACCAT+TGG | 0.545200 | 5.1:-76882378 | MS.gene37989:CDS |
| TTCTCTAAGAACTTGAAGCT+GGG | 0.547307 | 5.1:-76883172 | MS.gene37989:CDS |
| GGTCAGCTCAAGGAATTTGA+GGG | 0.548038 | 5.1:-76882902 | MS.gene37989:CDS |
| GTGTGGGAGTCCCAAGCTGG+TGG | 0.550695 | 5.1:-76883964 | MS.gene37989:CDS |
| CTGTTCGTCATCATTGTGCT+TGG | 0.552015 | 5.1:+76883990 | None:intergenic |
| TTAACAAAGCTAAGATACTC+AGG | 0.554583 | 5.1:+76883358 | None:intergenic |
| ATAATGTGAATGAACAGCTC+TGG | 0.554976 | 5.1:+76884329 | None:intergenic |
| TAAGGTCATCAGGAAGAACT+TGG | 0.555403 | 5.1:-76883266 | MS.gene37989:CDS |
| CCTTCTTCCTAAGCTTCTCA+AGG | 0.555668 | 5.1:+76882972 | None:intergenic |
| CTACTGGTGAAGCTCTTGGT+AGG | 0.561530 | 5.1:-76883918 | MS.gene37989:CDS |
| GGAAACGTGCTGATGCTGAC+AGG | 0.562915 | 5.1:-76882553 | MS.gene37989:CDS |
| TAGTGACTGGTGAGTATGGT+TGG | 0.563826 | 5.1:-76882697 | MS.gene37989:CDS |
| CAGTGAATGACCCACCAGCT+TGG | 0.566153 | 5.1:+76883953 | None:intergenic |
| GGACTATGTTACCAGGATGA+AGG | 0.567325 | 5.1:-76883059 | MS.gene37989:CDS |
| GAAAGAGATTTCTGATGATG+AGG | 0.568419 | 5.1:-76883761 | MS.gene37989:CDS |
| TCTTGAGGAACGCCGTCTGA+AGG | 0.568654 | 5.1:-76883851 | MS.gene37989:CDS |
| CAAAAGTGTTGGGCTCATCA+AGG | 0.569013 | 5.1:+76882462 | None:intergenic |
| AGAGGGAAGCAAGATGGAAG+AGG | 0.571151 | 5.1:-76882336 | MS.gene37989:CDS |
| TGGGTCATTCACTGTGACCA+GGG | 0.573714 | 5.1:-76883944 | MS.gene37989:CDS |
| CAAGGAGGTGTTGGGTGACA+AGG | 0.575150 | 5.1:-76882768 | MS.gene37989:CDS |
| GGTAACATAGTCCTTGAGGC+TGG | 0.577318 | 5.1:+76883069 | None:intergenic |
| GGGATATGAAGTGATTTACA+TGG | 0.578493 | 5.1:-76882951 | MS.gene37989:CDS |
| CCTCCATGATGGGATTCTCA+GGG | 0.578771 | 5.1:+76882582 | None:intergenic |
| ACAACCTAGGTACCATTGCT+AGG | 0.579010 | 5.1:-76884131 | MS.gene37989:CDS |
| TGTCGGTCAAGCCCTCAAAA+CGG | 0.582332 | 5.1:+76884372 | None:intergenic |
| GCAGATTTGGTGAACAACCT+AGG | 0.583680 | 5.1:-76884144 | MS.gene37989:intron |
| AGCAGAAGCCTATTTGGATG+AGG | 0.584932 | 5.1:-76883618 | MS.gene37989:CDS |
| ACTGGTGAAGCTCTTGGTAG+GGG | 0.586981 | 5.1:-76883916 | MS.gene37989:CDS |
| GAAGTTGATTGATCTCAGCC+TGG | 0.587212 | 5.1:+76885241 | None:intergenic |
| CAGACCTAGCAATGGTACCT+AGG | 0.590700 | 5.1:+76884127 | None:intergenic |
| CATCACCACTCTTGGTGGAG+TGG | 0.592725 | 5.1:+76883098 | None:intergenic |
| TAAGGTTGAGGAAGTAGACG+AGG | 0.592744 | 5.1:-76883710 | MS.gene37989:CDS |
| CAACCCTGAGAATCCCATCA+TGG | 0.597286 | 5.1:-76882585 | MS.gene37989:CDS |
| ATCCCATCATGGAGGAGCTG+AGG | 0.597622 | 5.1:-76882574 | MS.gene37989:CDS |
| GTATGCTGTTGGTCAGCTCA+AGG | 0.599835 | 5.1:-76882912 | MS.gene37989:CDS |
| GAAGTTCGACAATCTTTGCA+AGG | 0.601872 | 5.1:-76882795 | MS.gene37989:CDS |
| GAAGCTGATGCTGATGCAGA+GGG | 0.602230 | 5.1:-76882353 | MS.gene37989:CDS |
| TGATGCAGAGGGAAGCAAGA+TGG | 0.604134 | 5.1:-76882342 | MS.gene37989:CDS |
| CAGGAATGACAAATCTGTGA+AGG | 0.605359 | 5.1:-76882534 | MS.gene37989:CDS |
| GATTTCTGATGATGAGGACG+AGG | 0.608743 | 5.1:-76883755 | MS.gene37989:CDS |
| TCCTGGTAACATAGTCCTTG+AGG | 0.608835 | 5.1:+76883065 | None:intergenic |
| TAGTGTCTGCAACTAAAGAA+GGG | 0.609080 | 5.1:-76882871 | MS.gene37989:CDS |
| GCCTCAAGGACTATGTTACC+AGG | 0.610223 | 5.1:-76883066 | MS.gene37989:CDS |
| CATGTCAAGCAAGAAGACAA+TGG | 0.611061 | 5.1:-76882612 | MS.gene37989:CDS |
| CAATAACCTTCTCAGCAACA+AGG | 0.612540 | 5.1:+76884019 | None:intergenic |
| TATGTGTGGGAGTCCCAAGC+TGG | 0.615041 | 5.1:-76883967 | MS.gene37989:CDS |
| AGCTTTGAGGGATAGCAGCA+TGG | 0.615872 | 5.1:-76882642 | MS.gene37989:CDS |
| AATAACTCTCATCCTAAAGG+AGG | 0.618093 | 5.1:-76883887 | MS.gene37989:CDS |
| GCTTGGTCTTAGCATTGATG+AGG | 0.619021 | 5.1:-76882414 | MS.gene37989:CDS |
| CAACATGGAGAGGATCATGA+AGG | 0.620851 | 5.1:-76882669 | MS.gene37989:CDS |
| GTTGAAACTTGACGAGAGTG+AGG | 0.621123 | 5.1:-76882849 | MS.gene37989:CDS |
| ACTGTGACCAGGGATACTAC+TGG | 0.624760 | 5.1:-76883934 | MS.gene37989:CDS |
| GGATCAACTTGAGTATCTTG+AGG | 0.629396 | 5.1:-76883866 | MS.gene37989:CDS |
| AGCAAGGAGAATCGACAACA+CGG | 0.631988 | 5.1:+76882723 | None:intergenic |
| TAAGGGTATTGTGGACTCTG+AGG | 0.633755 | 5.1:-76883338 | MS.gene37989:CDS |
| AGGTACCACTCCACCAAGAG+TGG | 0.636721 | 5.1:-76883103 | MS.gene37989:CDS |
| GCAATTGATGAGTATGCTGT+TGG | 0.641021 | 5.1:-76882923 | MS.gene37989:CDS |
| GTATGGTTGGACTGCCAACA+TGG | 0.641083 | 5.1:-76882684 | MS.gene37989:CDS |
| TCTTAACCAAGTCCTTCAGA+CGG | 0.644789 | 5.1:+76883839 | None:intergenic |
| TGTGGGAGTCCCAAGCTGGT+GGG | 0.646830 | 5.1:-76883963 | MS.gene37989:CDS |
| GCATCAGCTTCCTCCAATGG+TGG | 0.651686 | 5.1:+76882365 | None:intergenic |
| AAGGTGATCAAGGAGGTGTT+GGG | 0.654251 | 5.1:-76882776 | MS.gene37989:CDS |
| TGATGACATGACCAGCCTCA+AGG | 0.657377 | 5.1:-76883080 | MS.gene37989:CDS |
| CCTAAGCTTCTCAAGGAAGG+GGG | 0.664638 | 5.1:+76882979 | None:intergenic |
| GTTGGACTGCCAACATGGAG+AGG | 0.668192 | 5.1:-76882679 | MS.gene37989:CDS |
| TATGTTACCAGGATGAAGGA+AGG | 0.670222 | 5.1:-76883055 | MS.gene37989:CDS |
| GGAAGCTGATGCTGATGCAG+AGG | 0.671926 | 5.1:-76882354 | MS.gene37989:CDS |
| AGTTGTCCATGATGAAAACA+CGG | 0.681053 | 5.1:+76883395 | None:intergenic |
| TCACCAGTCACTAAACAGCA+AGG | 0.682332 | 5.1:+76882707 | None:intergenic |
| GAAGCCAGAGGAGATTACAA+AGG | 0.683556 | 5.1:-76883596 | MS.gene37989:CDS |
| CTTGAAGCTGGGTATCCATG+AGG | 0.697436 | 5.1:-76883161 | MS.gene37989:CDS |
| ATGATGACGAACAGTATGTG+TGG | 0.698166 | 5.1:-76883981 | MS.gene37989:CDS |
| CTTGGTACCAGACCTAGCAA+TGG | 0.700707 | 5.1:+76884119 | None:intergenic |
| TTTCATCATGGACAACTGTG+AGG | 0.702798 | 5.1:-76883389 | MS.gene37989:CDS |
| CCCTGAGAATCCCATCATGG+AGG | 0.716906 | 5.1:-76882582 | MS.gene37989:CDS |
| TATTTGGATGAGGAAGCCAG+AGG | 0.740409 | 5.1:-76883608 | MS.gene37989:CDS |
| TGATGACGAACAGTATGTGT+GGG | 0.740423 | 5.1:-76883980 | MS.gene37989:CDS |
| TCTTTGCAAGGTGATCAAGG+AGG | 0.803604 | 5.1:-76882783 | MS.gene37989:CDS |
| TGTCCATGATGAAAACACGG+CGG | 0.827708 | 5.1:+76883398 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATTCAATTTCAATTT+AGG | + | chr5.1:76882834-76882853 | None:intergenic | 10.0% |
| !! | AAAAAATTGATCACATAATA+AGG | + | chr5.1:76882883-76882902 | None:intergenic | 15.0% |
| !! | ACTTTCATTCATATAATTAA+AGG | + | chr5.1:76882992-76883011 | None:intergenic | 15.0% |
| !! | ATATGATTAACATAGATTAT+TGG | + | chr5.1:76883024-76883043 | None:intergenic | 15.0% |
| !! | ATGAATGATATTGATATAAT+CGG | - | chr5.1:76882934-76882953 | MS.gene37989:CDS | 15.0% |
| !! | TAATTGATTATATACTCTTA+GGG | - | chr5.1:76882591-76882610 | MS.gene37989:CDS | 15.0% |
| !! | TCTAATACTTTGATATATTA+GGG | - | chr5.1:76883094-76883113 | MS.gene37989:CDS | 15.0% |
| !! | TTAATTGATTATATACTCTT+AGG | - | chr5.1:76882590-76882609 | MS.gene37989:CDS | 15.0% |
| !!! | AAATTGAATTTTAATTAGTC+CGG | - | chr5.1:76882840-76882859 | MS.gene37989:CDS | 15.0% |
| !!! | GGATTATTTTTTCAATTTTA+GGG | - | chr5.1:76882561-76882580 | MS.gene37989:CDS | 15.0% |
| !!! | TGGATTATTTTTTCAATTTT+AGG | - | chr5.1:76882560-76882579 | MS.gene37989:CDS | 15.0% |
| !! | GTCTAATACTTTGATATATT+AGG | - | chr5.1:76883093-76883112 | MS.gene37989:CDS | 20.0% |
| !!! | ATGATTTTTTAGTCATGTTT+AGG | - | chr5.1:76882684-76882703 | MS.gene37989:CDS | 20.0% |
| !!! | GAATGATGATTTTATTATTG+TGG | - | chr5.1:76883141-76883160 | MS.gene37989:CDS | 20.0% |
| !!! | TCTTTTGTTATCGTTTTTAT+TGG | - | chr5.1:76882540-76882559 | MS.gene37989:CDS | 20.0% |
| ! | AATGACATTTACTACATTAC+CGG | - | chr5.1:76884567-76884586 | MS.gene37989:intron | 25.0% |
| ! | ACATGACTAAAAAATCATCA+CGG | + | chr5.1:76882682-76882701 | None:intergenic | 25.0% |
| ! | ATACTTTGATATATTAGGGT+TGG | - | chr5.1:76883098-76883117 | MS.gene37989:CDS | 25.0% |
| ! | ATTGTGATGAATGTTCTATA+CGG | - | chr5.1:76882733-76882752 | MS.gene37989:CDS | 25.0% |
| ! | GAAGAAAAAGAAGAAGATTA+AGG | - | chr5.1:76883924-76883943 | MS.gene37989:CDS | 25.0% |
| ! | TAAAATAACTCTCATCCTAA+AGG | - | chr5.1:76883705-76883724 | MS.gene37989:CDS | 25.0% |
| !! | ATATATTAGGGTTGGATTTT+AGG | - | chr5.1:76883106-76883125 | MS.gene37989:CDS | 25.0% |
| !! | ATTATATACTCTTAGGGTTT+TGG | - | chr5.1:76882597-76882616 | MS.gene37989:CDS | 25.0% |
| !!! | CAATACTTTTTACAGTAACA+AGG | - | chr5.1:76882390-76882409 | MS.gene37989:CDS | 25.0% |
| !!! | TGTTTTTATGAGTCAGAAAT+TGG | - | chr5.1:76883364-76883383 | MS.gene37989:CDS | 25.0% |
| ACTTTGACTATCATTGATAG+TGG | - | chr5.1:76883308-76883327 | MS.gene37989:CDS | 30.0% | |
| ATCTCTCTTGAAATGTTAAG+TGG | + | chr5.1:76884288-76884307 | None:intergenic | 30.0% | |
| GAAAAAGAAGAAGATTAAGG+AGG | - | chr5.1:76883927-76883946 | MS.gene37989:CDS | 30.0% | |
| TAGCTATCCAATTTCTCTTT+GGG | - | chr5.1:76883795-76883814 | MS.gene37989:CDS | 30.0% | |
| TATTGTTCTGATTCTTGTGT+TGG | - | chr5.1:76883171-76883190 | MS.gene37989:CDS | 30.0% | |
| TCAAACAACAACAACAACAA+CGG | + | chr5.1:76882656-76882675 | None:intergenic | 30.0% | |
| TGAGGATGAAAAGAAAAAGA+TGG | - | chr5.1:76884764-76884783 | MS.gene37989:intron | 30.0% | |
| TTAACAAAGCTAAGATACTC+AGG | + | chr5.1:76884240-76884259 | None:intergenic | 30.0% | |
| TTAGCTATCCAATTTCTCTT+TGG | - | chr5.1:76883794-76883813 | MS.gene37989:CDS | 30.0% | |
| TTTGTGTCAAAGAGATCAAA+AGG | + | chr5.1:76884147-76884166 | None:intergenic | 30.0% | |
| ! | TCTGTTTTATGTTGCAGATT+TGG | - | chr5.1:76883438-76883457 | MS.gene37989:CDS | 30.0% |
| !! | AATGATAGTCAAAGTGTTGT+TGG | + | chr5.1:76883303-76883322 | None:intergenic | 30.0% |
| !! | AGACTACAACAAGTTTTATG+AGG | - | chr5.1:76884398-76884417 | MS.gene37989:intron | 30.0% |
| !! | GAGTATCTTAGCTTTGTTAA+GGG | - | chr5.1:76884240-76884259 | MS.gene37989:intron | 30.0% |
| !! | TGAGTATCTTAGCTTTGTTA+AGG | - | chr5.1:76884239-76884258 | MS.gene37989:intron | 30.0% |
| AATAACTCTCATCCTAAAGG+AGG | - | chr5.1:76883708-76883727 | MS.gene37989:CDS | 35.0% | |
| ACATACAGCTTGATGTTGTT+GGG | + | chr5.1:76884177-76884196 | None:intergenic | 35.0% | |
| AGTTGTCCATGATGAAAACA+CGG | + | chr5.1:76884203-76884222 | None:intergenic | 35.0% | |
| ATAATGTGAATGAACAGCTC+TGG | + | chr5.1:76883269-76883288 | None:intergenic | 35.0% | |
| GAAAAAGATGGAAGAACAGA+AGG | - | chr5.1:76884776-76884795 | MS.gene37989:intron | 35.0% | |
| GAAGAAGAAGAAGCTTACAT+CGG | + | chr5.1:76882449-76882468 | None:intergenic | 35.0% | |
| GGATTGATATCAATACAAGC+CGG | + | chr5.1:76882862-76882881 | None:intergenic | 35.0% | |
| GGGATATGAAGTGATTTACA+TGG | - | chr5.1:76884644-76884663 | MS.gene37989:intron | 35.0% | |
| TAGTGTCTGCAACTAAAGAA+GGG | - | chr5.1:76884724-76884743 | MS.gene37989:intron | 35.0% | |
| TATAGCTTCCATGAATTCCT+TGG | + | chr5.1:76883497-76883516 | None:intergenic | 35.0% | |
| TCAACAGAACAAGATCCTTA+AGG | - | chr5.1:76884311-76884330 | MS.gene37989:CDS | 35.0% | |
| TTCTCAACCCAAAGAGAAAT+TGG | + | chr5.1:76883805-76883824 | None:intergenic | 35.0% | |
| ! | GAAAGAGATTTCTGATGATG+AGG | - | chr5.1:76883834-76883853 | MS.gene37989:CDS | 35.0% |
| ! | TTCTCTAAGAACTTGAAGCT+GGG | - | chr5.1:76884423-76884442 | MS.gene37989:intron | 35.0% |
| ! | TTGGATAAGATCCGTTTTGA+GGG | - | chr5.1:76883212-76883231 | MS.gene37989:CDS | 35.0% |
| ! | TTTCTCTAAGAACTTGAAGC+TGG | - | chr5.1:76884422-76884441 | MS.gene37989:intron | 35.0% |
| ! | TTTGGATAAGATCCGTTTTG+AGG | - | chr5.1:76883211-76883230 | MS.gene37989:CDS | 35.0% |
| !! | ACTATCATTGATAGTGGCAT+TGG | - | chr5.1:76883314-76883333 | MS.gene37989:CDS | 35.0% |
| !! | ATCGGCACTTTAAGTTTTGA+AGG | - | chr5.1:76882952-76882971 | MS.gene37989:CDS | 35.0% |
| !! | CTTTGAAATTGCTGAGAACA+AGG | - | chr5.1:76884374-76884393 | MS.gene37989:CDS | 35.0% |
| !! | TAGCTTTGTTAAGGGTATTG+TGG | - | chr5.1:76884248-76884267 | MS.gene37989:intron | 35.0% |
| !! | TATACTCTTAGGGTTTTGGT+TGG | - | chr5.1:76882601-76882620 | MS.gene37989:CDS | 35.0% |
| !! | TTAAGGAGGTGTCTAATGAA+TGG | - | chr5.1:76883941-76883960 | MS.gene37989:CDS | 35.0% |
| !!! | TCTTGTTTTGAGAATCCTCA+TGG | + | chr5.1:76884452-76884471 | None:intergenic | 35.0% |
| AACAGCTTTCTTGCTTTCAC+CGG | + | chr5.1:76884589-76884608 | None:intergenic | 40.0% | |
| ACAAGAGTCTCACCAATGAT+TGG | - | chr5.1:76884040-76884059 | MS.gene37989:CDS | 40.0% | |
| ACAAGATCCTTAAGGTCATC+AGG | - | chr5.1:76884319-76884338 | MS.gene37989:CDS | 40.0% | |
| AGTAGACGAGGAGAAAGAAA+AGG | - | chr5.1:76883897-76883916 | MS.gene37989:CDS | 40.0% | |
| AGTTCTTCCTGATGACCTTA+AGG | + | chr5.1:76884329-76884348 | None:intergenic | 40.0% | |
| CAAATGCTCTTCCCAATCAT+TGG | + | chr5.1:76884055-76884074 | None:intergenic | 40.0% | |
| CAAGAGTCTCACCAATGATT+GGG | - | chr5.1:76884041-76884060 | MS.gene37989:CDS | 40.0% | |
| CAATAACCTTCTCAGCAACA+AGG | + | chr5.1:76883579-76883598 | None:intergenic | 40.0% | |
| CAATCTTTGCAAGGTGATCA+AGG | - | chr5.1:76884809-76884828 | MS.gene37989:intron | 40.0% | |
| CAGGAATGACAAATCTGTGA+AGG | - | chr5.1:76885061-76885080 | MS.gene37989:intron | 40.0% | |
| CATGTCAAGCAAGAAGACAA+TGG | - | chr5.1:76884983-76885002 | MS.gene37989:intron | 40.0% | |
| CTAGTGTCTGCAACTAAAGA+AGG | - | chr5.1:76884723-76884742 | MS.gene37989:intron | 40.0% | |
| CTTGAGAAGCTTAGGAAGAA+GGG | - | chr5.1:76884624-76884643 | MS.gene37989:intron | 40.0% | |
| GAAGTTCGACAATCTTTGCA+AGG | - | chr5.1:76884800-76884819 | MS.gene37989:intron | 40.0% | |
| GAATGTTGTGTTGTAGGCTT+TGG | - | chr5.1:76883193-76883212 | MS.gene37989:CDS | 40.0% | |
| GACATACAGCTTGATGTTGT+TGG | + | chr5.1:76884178-76884197 | None:intergenic | 40.0% | |
| GCAATTGATGAGTATGCTGT+TGG | - | chr5.1:76884672-76884691 | MS.gene37989:intron | 40.0% | |
| GGATCAACTTGAGTATCTTG+AGG | - | chr5.1:76883729-76883748 | MS.gene37989:CDS | 40.0% | |
| GGTGTCTAATGAATGGTCTT+TGG | - | chr5.1:76883948-76883967 | MS.gene37989:CDS | 40.0% | |
| GTGAGTATGATTGGACAGTT+TGG | - | chr5.1:76883532-76883551 | MS.gene37989:CDS | 40.0% | |
| GTGTTGGAATGTTGTGTTGT+AGG | - | chr5.1:76883187-76883206 | MS.gene37989:CDS | 40.0% | |
| GTTAAGCACTTCTCTGTTGA+GGG | - | chr5.1:76884078-76884097 | MS.gene37989:CDS | 40.0% | |
| TAAGGTCATCAGGAAGAACT+TGG | - | chr5.1:76884329-76884348 | MS.gene37989:CDS | 40.0% | |
| TATGTTACCAGGATGAAGGA+AGG | - | chr5.1:76884540-76884559 | MS.gene37989:intron | 40.0% | |
| TCATCCTTTGTAATCTCCTC+TGG | + | chr5.1:76884006-76884025 | None:intergenic | 40.0% | |
| TCTTAACCAAGTCCTTCAGA+CGG | + | chr5.1:76883759-76883778 | None:intergenic | 40.0% | |
| TGAACAAGCAGAAGCCTATT+TGG | - | chr5.1:76883971-76883990 | MS.gene37989:CDS | 40.0% | |
| TGTTAAGCACTTCTCTGTTG+AGG | - | chr5.1:76884077-76884096 | MS.gene37989:CDS | 40.0% | |
| TGTTTAGTGACTGGTGAGTA+TGG | - | chr5.1:76884894-76884913 | MS.gene37989:intron | 40.0% | |
| TTCCTAAGCTTCTCAAGGAA+GGG | + | chr5.1:76884621-76884640 | None:intergenic | 40.0% | |
| TTTCATCATGGACAACTGTG+AGG | - | chr5.1:76884206-76884225 | MS.gene37989:intron | 40.0% | |
| ! | AAACGTTAGCTTACCAGCTT+TGG | + | chr5.1:76883345-76883364 | None:intergenic | 40.0% |
| ! | AATCCTGTTGCCAAAAGTGT+TGG | + | chr5.1:76885147-76885166 | None:intergenic | 40.0% |
| ! | AGAATCAAGCTTGCTCTTGT+CGG | + | chr5.1:76883243-76883262 | None:intergenic | 40.0% |
| ! | ATGATGACGAACAGTATGTG+TGG | - | chr5.1:76883614-76883633 | MS.gene37989:CDS | 40.0% |
| ! | TGATGACGAACAGTATGTGT+GGG | - | chr5.1:76883615-76883634 | MS.gene37989:CDS | 40.0% |
| !! | AAAGTGTTGTTGGTCTTGTC+AGG | + | chr5.1:76883293-76883312 | None:intergenic | 40.0% |
| !! | ACTCAAGTTGATCCTCCTTT+AGG | + | chr5.1:76883723-76883742 | None:intergenic | 40.0% |
| !! | AGATCAAAAGGTGCTCTCTT+GGG | + | chr5.1:76884135-76884154 | None:intergenic | 40.0% |
| !! | ATCCTGTTGCCAAAAGTGTT+GGG | + | chr5.1:76885146-76885165 | None:intergenic | 40.0% |
| !! | ATGATTGGACAGTTTGGTGT+TGG | - | chr5.1:76883538-76883557 | MS.gene37989:CDS | 40.0% |
| !! | CAATGATTGGGAAGAGCATT+TGG | - | chr5.1:76884053-76884072 | MS.gene37989:CDS | 40.0% |
| ACAACCTAGGTACCATTGCT+AGG | - | chr5.1:76883464-76883483 | MS.gene37989:CDS | 45.0% | |
| AGCAAGGAGAATCGACAACA+CGG | + | chr5.1:76884875-76884894 | None:intergenic | 45.0% | |
| AGCAGAAGCCTATTTGGATG+AGG | - | chr5.1:76883977-76883996 | MS.gene37989:CDS | 45.0% | |
| ATTCACAGGATGCTCAAGCT+TGG | - | chr5.1:76885164-76885183 | MS.gene37989:intron | 45.0% | |
| ATTCTGTCCTTCCTTCATCC+TGG | + | chr5.1:76884550-76884569 | None:intergenic | 45.0% | |
| CAACATGGAGAGGATCATGA+AGG | - | chr5.1:76884926-76884945 | MS.gene37989:intron | 45.0% | |
| CCTTCTTCCTAAGCTTCTCA+AGG | + | chr5.1:76884626-76884645 | None:intergenic | 45.0% | |
| CCTTGAGAAGCTTAGGAAGA+AGG | - | chr5.1:76884623-76884642 | MS.gene37989:intron | 45.0% | |
| CTGTTCGTCATCATTGTGCT+TGG | + | chr5.1:76883608-76883627 | None:intergenic | 45.0% | |
| CTTCATGATCCTCTCCATGT+TGG | + | chr5.1:76884928-76884947 | None:intergenic | 45.0% | |
| CTTCCTAAGCTTCTCAAGGA+AGG | + | chr5.1:76884622-76884641 | None:intergenic | 45.0% | |
| GAAGAGAAGAAGGAAGAGGA+GGG | - | chr5.1:76883862-76883881 | MS.gene37989:CDS | 45.0% | |
| GAAGCCAGAGGAGATTACAA+AGG | - | chr5.1:76883999-76884018 | MS.gene37989:CDS | 45.0% | |
| GAGACTGCTCTTCTTACTTC+TGG | - | chr5.1:76885104-76885123 | MS.gene37989:intron | 45.0% | |
| GATACTACTGGTGAAGCTCT+TGG | - | chr5.1:76883673-76883692 | MS.gene37989:CDS | 45.0% | |
| GGACTATGTTACCAGGATGA+AGG | - | chr5.1:76884536-76884555 | MS.gene37989:intron | 45.0% | |
| GGTCAGCTCAAGGAATTTGA+GGG | - | chr5.1:76884693-76884712 | MS.gene37989:intron | 45.0% | |
| GTCTGGTACCAAGGAATTCA+TGG | - | chr5.1:76883486-76883505 | MS.gene37989:CDS | 45.0% | |
| GTTGAAACTTGACGAGAGTG+AGG | - | chr5.1:76884746-76884765 | MS.gene37989:intron | 45.0% | |
| TAAGGTTGAGGAAGTAGACG+AGG | - | chr5.1:76883885-76883904 | MS.gene37989:CDS | 45.0% | |
| TACTGGTGAAGCTCTTGGTA+GGG | - | chr5.1:76883678-76883697 | MS.gene37989:CDS | 45.0% | |
| TAGTGACTGGTGAGTATGGT+TGG | - | chr5.1:76884898-76884917 | MS.gene37989:intron | 45.0% | |
| TATTTGGATGAGGAAGCCAG+AGG | - | chr5.1:76883987-76884006 | MS.gene37989:CDS | 45.0% | |
| TCACCAGTCACTAAACAGCA+AGG | + | chr5.1:76884891-76884910 | None:intergenic | 45.0% | |
| TCCTAAGCTTCTCAAGGAAG+GGG | + | chr5.1:76884620-76884639 | None:intergenic | 45.0% | |
| TCCTGGTAACATAGTCCTTG+AGG | + | chr5.1:76884533-76884552 | None:intergenic | 45.0% | |
| TCTTTGCAAGGTGATCAAGG+AGG | - | chr5.1:76884812-76884831 | MS.gene37989:intron | 45.0% | |
| TGAGGGTCAGTTGGAGTTTA+AGG | - | chr5.1:76884095-76884114 | MS.gene37989:CDS | 45.0% | |
| TGCTTACCTTGTTGCTGAGA+AGG | - | chr5.1:76883570-76883589 | MS.gene37989:CDS | 45.0% | |
| TGGTCAGCTCAAGGAATTTG+AGG | - | chr5.1:76884692-76884711 | MS.gene37989:intron | 45.0% | |
| TGTCCATGATGAAAACACGG+CGG | + | chr5.1:76884200-76884219 | None:intergenic | 45.0% | |
| TTCATGGAAGCTATAGCTGC+TGG | - | chr5.1:76883502-76883521 | MS.gene37989:CDS | 45.0% | |
| TTCGTCATCATTGTGCTTGG+TGG | + | chr5.1:76883605-76883624 | None:intergenic | 45.0% | |
| ! | CATGAAGGCACAAGCTTTGA+GGG | - | chr5.1:76884941-76884960 | MS.gene37989:intron | 45.0% |
| ! | CTTGATGAGCCCAACACTTT+TGG | - | chr5.1:76885134-76885153 | MS.gene37989:intron | 45.0% |
| ! | CTTTTGGCAACAGGATTCAC+AGG | - | chr5.1:76885150-76885169 | MS.gene37989:intron | 45.0% |
| ! | GAAGTTGATTGATCTCAGCC+TGG | + | chr5.1:76882357-76882376 | None:intergenic | 45.0% |
| ! | GATTTCTGATGATGAGGACG+AGG | - | chr5.1:76883840-76883859 | MS.gene37989:CDS | 45.0% |
| ! | TCATGAAGGCACAAGCTTTG+AGG | - | chr5.1:76884940-76884959 | MS.gene37989:intron | 45.0% |
| ! | TCTGGCTTCCTCATCCAAAT+AGG | + | chr5.1:76883988-76884007 | None:intergenic | 45.0% |
| !! | AAGGTGATCAAGGAGGTGTT+GGG | - | chr5.1:76884819-76884838 | MS.gene37989:intron | 45.0% |
| !! | CAAAAGTGTTGGGCTCATCA+AGG | + | chr5.1:76885136-76885155 | None:intergenic | 45.0% |
| !! | CTAAGCTTGCTGATTTGCTC+AGG | - | chr5.1:76884472-76884491 | MS.gene37989:intron | 45.0% |
| !! | GAGATCAAAAGGTGCTCTCT+TGG | + | chr5.1:76884136-76884155 | None:intergenic | 45.0% |
| !! | GCAGATTTGGTGAACAACCT+AGG | - | chr5.1:76883451-76883470 | MS.gene37989:CDS | 45.0% |
| !! | GCTTGGTCTTAGCATTGATG+AGG | - | chr5.1:76885181-76885200 | MS.gene37989:CDS | 45.0% |
| !! | GGTGCTGATGTGAGTATGAT+TGG | - | chr5.1:76883523-76883542 | MS.gene37989:CDS | 45.0% |
| !! | TAAGGGTATTGTGGACTCTG+AGG | - | chr5.1:76884257-76884276 | MS.gene37989:intron | 45.0% |
| !! | TCTCCTTGCTGTTTAGTGAC+TGG | - | chr5.1:76884885-76884904 | MS.gene37989:intron | 45.0% |
| !! | TTTGGTTGGTGGCGTTGTTT+AGG | - | chr5.1:76882615-76882634 | MS.gene37989:CDS | 45.0% |
| !!! | ACTCTTAGGGTTTTGGTTGG+TGG | - | chr5.1:76882604-76882623 | MS.gene37989:CDS | 45.0% |
| !!! | TTTTATTTTTTTGTTTATTA+GGG | - | chr5.1:76882474-76882493 | MS.gene37989:CDS | 5.0% |
| !!! | TTTTTATTTTTTTGTTTATT+AGG | - | chr5.1:76882473-76882492 | MS.gene37989:CDS | 5.0% |
| ACAAGAGACGTTCGCTTTCC+AGG | - | chr5.1:76882336-76882355 | MS.gene37989:CDS | 50.0% | |
| ACTGGTGAAGCTCTTGGTAG+GGG | - | chr5.1:76883679-76883698 | MS.gene37989:CDS | 50.0% | |
| ACTGTGACCAGGGATACTAC+TGG | - | chr5.1:76883661-76883680 | MS.gene37989:CDS | 50.0% | |
| AGAGGGAAGCAAGATGGAAG+AGG | - | chr5.1:76885259-76885278 | MS.gene37989:CDS | 50.0% | |
| AGCTTCACCAGTAGTATCCC+TGG | + | chr5.1:76883671-76883690 | None:intergenic | 50.0% | |
| AGTGAATGACCCACCAGCTT+GGG | + | chr5.1:76883644-76883663 | None:intergenic | 50.0% | |
| CAACCCTGAGAATCCCATCA+TGG | - | chr5.1:76885010-76885029 | MS.gene37989:intron | 50.0% | |
| CAGACCTAGCAATGGTACCT+AGG | + | chr5.1:76883471-76883490 | None:intergenic | 50.0% | |
| CATGTCATCACCACTCTTGG+TGG | + | chr5.1:76884505-76884524 | None:intergenic | 50.0% | |
| CATTGCTAGGTCTGGTACCA+AGG | - | chr5.1:76883477-76883496 | MS.gene37989:CDS | 50.0% | |
| CCTAAGCTTCTCAAGGAAGG+GGG | + | chr5.1:76884619-76884638 | None:intergenic | 50.0% | |
| CGAGGAAGAGAAGAAGGAAG+AGG | - | chr5.1:76883858-76883877 | MS.gene37989:CDS | 50.0% | |
| CTACTGGTGAAGCTCTTGGT+AGG | - | chr5.1:76883677-76883696 | MS.gene37989:CDS | 50.0% | |
| CTAGGTACCATTGCTAGGTC+TGG | - | chr5.1:76883469-76883488 | MS.gene37989:CDS | 50.0% | |
| CTTCTCTGTTGAGGGTCAGT+TGG | - | chr5.1:76884086-76884105 | MS.gene37989:CDS | 50.0% | |
| CTTGAAGCTGGGTATCCATG+AGG | - | chr5.1:76884434-76884453 | MS.gene37989:intron | 50.0% | |
| CTTGGTACCAGACCTAGCAA+TGG | + | chr5.1:76883479-76883498 | None:intergenic | 50.0% | |
| GAAGAAGGAAGAGGAGGGTA+AGG | - | chr5.1:76883867-76883886 | MS.gene37989:CDS | 50.0% | |
| GAAGCTGATGCTGATGCAGA+GGG | - | chr5.1:76885242-76885261 | MS.gene37989:CDS | 50.0% | |
| GCCTCAAGGACTATGTTACC+AGG | - | chr5.1:76884529-76884548 | MS.gene37989:intron | 50.0% | |
| GGAAGAGAAGAAGGAAGAGG+AGG | - | chr5.1:76883861-76883880 | MS.gene37989:CDS | 50.0% | |
| GGGTGACAAGGTTGAGAAAG+TGG | - | chr5.1:76884839-76884858 | MS.gene37989:intron | 50.0% | |
| GGTAACATAGTCCTTGAGGC+TGG | + | chr5.1:76884529-76884548 | None:intergenic | 50.0% | |
| GGTCATGTCATCACCACTCT+TGG | + | chr5.1:76884508-76884527 | None:intergenic | 50.0% | |
| GTATGCTGTTGGTCAGCTCA+AGG | - | chr5.1:76884683-76884702 | MS.gene37989:intron | 50.0% | |
| GTATGGTTGGACTGCCAACA+TGG | - | chr5.1:76884911-76884930 | MS.gene37989:intron | 50.0% | |
| TCAGCATCAGCTTCCTCCAA+TGG | + | chr5.1:76885236-76885255 | None:intergenic | 50.0% | |
| TGAGGACGAGGAAGAGAAGA+AGG | - | chr5.1:76883852-76883871 | MS.gene37989:CDS | 50.0% | |
| TGATGACATGACCAGCCTCA+AGG | - | chr5.1:76884515-76884534 | MS.gene37989:intron | 50.0% | |
| TGATGCAGAGGGAAGCAAGA+TGG | - | chr5.1:76885253-76885272 | MS.gene37989:CDS | 50.0% | |
| TGATGCTGACATGCCACCAT+TGG | - | chr5.1:76885217-76885236 | MS.gene37989:CDS | 50.0% | |
| TGGGTCATTCACTGTGACCA+GGG | - | chr5.1:76883651-76883670 | MS.gene37989:CDS | 50.0% | |
| TGTCGGTCAAGCCCTCAAAA+CGG | + | chr5.1:76883226-76883245 | None:intergenic | 50.0% | |
| TTCCTCAGCTCCTCCATGAT+GGG | + | chr5.1:76885026-76885045 | None:intergenic | 50.0% | |
| TTTCCTCAGCTCCTCCATGA+TGG | + | chr5.1:76885027-76885046 | None:intergenic | 50.0% | |
| ! | AGCCCAACACTTTTGGCAAC+AGG | - | chr5.1:76885141-76885160 | MS.gene37989:intron | 50.0% |
| ! | CAAGGTGATCAAGGAGGTGT+TGG | - | chr5.1:76884818-76884837 | MS.gene37989:intron | 50.0% |
| ! | CCTCCATGATGGGATTCTCA+GGG | + | chr5.1:76885016-76885035 | None:intergenic | 50.0% |
| ! | GGCATTGGAATGACCAAAGC+TGG | - | chr5.1:76883329-76883348 | MS.gene37989:CDS | 50.0% |
| ! | TCCTCCATGATGGGATTCTC+AGG | + | chr5.1:76885017-76885036 | None:intergenic | 50.0% |
| ! | TGTCCGCCGTGTTTTCATCA+TGG | - | chr5.1:76884194-76884213 | MS.gene37989:intron | 50.0% |
| !! | AGCTTTGAGGGATAGCAGCA+TGG | - | chr5.1:76884953-76884972 | MS.gene37989:intron | 50.0% |
| AGGTACCACTCCACCAAGAG+TGG | - | chr5.1:76884492-76884511 | MS.gene37989:intron | 55.0% | |
| ATCCCATCATGGAGGAGCTG+AGG | - | chr5.1:76885021-76885040 | MS.gene37989:intron | 55.0% | |
| CAGTGAATGACCCACCAGCT+TGG | + | chr5.1:76883645-76883664 | None:intergenic | 55.0% | |
| CATCACCACTCTTGGTGGAG+TGG | + | chr5.1:76884500-76884519 | None:intergenic | 55.0% | |
| CCCCCTTCCTTGAGAAGCTT+AGG | - | chr5.1:76884616-76884635 | MS.gene37989:intron | 55.0% | |
| CCCTGAGAATCCCATCATGG+AGG | - | chr5.1:76885013-76885032 | MS.gene37989:intron | 55.0% | |
| GCATCAGCTTCCTCCAATGG+TGG | + | chr5.1:76885233-76885252 | None:intergenic | 55.0% | |
| GGAAGAGGAGGGTAAGGTTG+AGG | - | chr5.1:76883873-76883892 | MS.gene37989:CDS | 55.0% | |
| GGAAGCTGATGCTGATGCAG+AGG | - | chr5.1:76885241-76885260 | MS.gene37989:CDS | 55.0% | |
| GTGGGTCATTCACTGTGACC+AGG | - | chr5.1:76883650-76883669 | MS.gene37989:CDS | 55.0% | |
| GTTGGACTGCCAACATGGAG+AGG | - | chr5.1:76884916-76884935 | MS.gene37989:intron | 55.0% | |
| TATGTGTGGGAGTCCCAAGC+TGG | - | chr5.1:76883628-76883647 | MS.gene37989:CDS | 55.0% | |
| TCTTGAGGAACGCCGTCTGA+AGG | - | chr5.1:76883744-76883763 | MS.gene37989:CDS | 55.0% | |
| TGCTGACATGCCACCATTGG+AGG | - | chr5.1:76885220-76885239 | MS.gene37989:CDS | 55.0% | |
| TTGAGGGATAGCAGCATGGC+TGG | - | chr5.1:76884957-76884976 | MS.gene37989:intron | 55.0% | |
| ! | GGAAACGTGCTGATGCTGAC+AGG | - | chr5.1:76885042-76885061 | MS.gene37989:intron | 55.0% |
| !! | CAAGGAGGTGTTGGGTGACA+AGG | - | chr5.1:76884827-76884846 | MS.gene37989:intron | 55.0% |
| GGAACGCCGTCTGAAGGACT+TGG | - | chr5.1:76883750-76883769 | MS.gene37989:CDS | 60.0% | |
| TGTGGGAGTCCCAAGCTGGT+GGG | - | chr5.1:76883632-76883651 | MS.gene37989:CDS | 60.0% | |
| GTGTGGGAGTCCCAAGCTGG+TGG | - | chr5.1:76883631-76883650 | MS.gene37989:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 76882328 | 76885289 | 76882328 | ID=MS.gene37989 |
| chr5.1 | mRNA | 76882328 | 76885289 | 76882328 | ID=MS.gene37989.t1;Parent=MS.gene37989 |
| chr5.1 | exon | 76885167 | 76885289 | 76885167 | ID=MS.gene37989.t1.exon1;Parent=MS.gene37989.t1 |
| chr5.1 | CDS | 76885167 | 76885289 | 76885167 | ID=cds.MS.gene37989.t1;Parent=MS.gene37989.t1 |
| chr5.1 | exon | 76884267 | 76884408 | 76884267 | ID=MS.gene37989.t1.exon2;Parent=MS.gene37989.t1 |
| chr5.1 | CDS | 76884267 | 76884408 | 76884267 | ID=cds.MS.gene37989.t1;Parent=MS.gene37989.t1 |
| chr5.1 | exon | 76882328 | 76884162 | 76882328 | ID=MS.gene37989.t1.exon3;Parent=MS.gene37989.t1 |
| chr5.1 | CDS | 76882328 | 76884162 | 76882328 | ID=cds.MS.gene37989.t1;Parent=MS.gene37989.t1 |
| Gene Sequence |
| Protein sequence |
