AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene81288

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81288.t1 MTR_5g096430 99.857 699 1 0 1 699 1 699 0.0 1419
MS.gene81288.t1 MTR_5g096460 99.857 699 1 0 1 699 1 699 0.0 1419
MS.gene81288.t1 MTR_6g452990 88.160 701 79 3 1 699 1 699 0.0 1186
MS.gene81288.t1 MTR_1g099840 84.692 699 92 2 1 699 6 689 0.0 1146
MS.gene81288.t1 MTR_1g025430 48.867 706 320 8 5 673 78 779 0.0 642
MS.gene81288.t1 MTR_5g097320 45.562 676 345 10 5 667 90 755 0.0 577
MS.gene81288.t1 MTR_0009s0390 45.634 710 354 13 5 698 82 775 0.0 577
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene81288.t1 AT5G56000 90.714 700 63 2 1 699 1 699 0.0 1205
MS.gene81288.t1 AT5G56030 92.286 700 52 2 1 699 1 699 0.0 1196
MS.gene81288.t1 AT5G56010 92.000 700 54 2 1 699 1 699 0.0 1194
MS.gene81288.t1 AT5G56030 88.615 729 52 3 1 699 1 728 0.0 1181
MS.gene81288.t1 AT5G52640 85.185 702 99 5 1 699 1 700 0.0 1148
MS.gene81288.t1 AT4G24190 50.356 703 310 8 5 672 77 775 0.0 643
MS.gene81288.t1 AT4G24190 50.356 703 310 8 5 672 77 775 0.0 642
MS.gene81288.t1 AT2G04030 47.485 676 329 11 5 668 77 738 0.0 597
MS.gene81288.t1 AT3G07770 45.495 677 346 10 5 668 95 761 0.0 590
MS.gene81288.t1 AT3G07770 45.495 677 346 10 5 668 95 761 0.0 590
MS.gene81288.t1 AT3G07770 45.495 677 346 10 5 668 95 761 0.0 590
MS.gene81288.t1 AT2G04030 47.033 674 332 11 5 668 77 735 0.0 588

Find 186 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGGGACAGTTGGAGTTTA+AGG 0.160886 5.2:-80847204 MS.gene81288:CDS
AATCTCCTTGTTACTGTAAA+AGG 0.195492 5.2:+80848944 None:intergenic
GAGACTGCTCTTCTTACTTC+TGG 0.243959 5.2:-80846195 MS.gene81288:CDS
TTTCCTCAGCTCCTCCATTA+TGG 0.246479 5.2:+80846275 None:intergenic
ACAAGAGACGTTTGCTTTCC+AGG 0.252769 5.2:-80849003 MS.gene81288:CDS
TTCTCAACCCAAAGAGAAAT+TGG 0.256773 5.2:+80847497 None:intergenic
TGAACAAGCAGAAGCCTATT+TGG 0.260701 5.2:-80847328 MS.gene81288:CDS
TTAGCTATCCAATTTCTCTT+TGG 0.269210 5.2:-80847505 MS.gene81288:CDS
TTCCTCAGCTCCTCCATTAT+GGG 0.271018 5.2:+80846276 None:intergenic
CTTGATGAGCCCAACACTTT+TGG 0.271765 5.2:-80846165 MS.gene81288:CDS
TAGCTATCCAATTTCTCTTT+GGG 0.282969 5.2:-80847504 MS.gene81288:CDS
ACTATCATTGATAGTGGAAT+TGG 0.289715 5.2:-80847979 MS.gene81288:CDS
CTCCTCCATTATGGGGTTCT+CGG 0.308210 5.2:+80846284 None:intergenic
CAATGATTGGGAAGAGCATT+TGG 0.340719 5.2:-80847246 MS.gene81288:CDS
TCCTCCATTATGGGGTTCTC+GGG 0.353116 5.2:+80846285 None:intergenic
TGTTTAGTGACTGGTGAGTA+TGG 0.358330 5.2:-80846405 MS.gene81288:CDS
TCAGGCTTCCTCATCCAAAT+AGG 0.372502 5.2:+80847314 None:intergenic
GACATACAGCTTGATGTTGT+TGG 0.373069 5.2:+80847124 None:intergenic
GTCTGGTACCAAGGAATTCA+TGG 0.376590 5.2:-80847813 MS.gene81288:CDS
AATGACATTTACTACATTAC+CGG 0.381181 5.2:-80846732 MS.gene81288:CDS
ACAAGAGTCTCACCAATGAT+TGG 0.384273 5.2:-80847259 MS.gene81288:CDS
TCATGCTAACTTACCAGCTT+TGG 0.386587 5.2:+80847951 None:intergenic
ACATACAGCTTGATGTTGTT+GGG 0.394439 5.2:+80847125 None:intergenic
AAGGTGTTGTTGGTCTTGTC+AGG 0.401362 5.2:+80848003 None:intergenic
TCAACAGAACAAGATTCTTA+AGG 0.404319 5.2:-80846988 MS.gene81288:CDS
GAAGAAGGAAGAGGAGGGTA+AGG 0.417477 5.2:-80847432 MS.gene81288:CDS
GGTGCTGATGTTAGCATGAT+TGG 0.418135 5.2:-80847776 MS.gene81288:CDS
CGAGGAAGAGAAGAAGGAAG+AGG 0.429375 5.2:-80847441 MS.gene81288:CDS
GGTCATGTCATCACCACTCT+TGG 0.434025 5.2:+80846794 None:intergenic
GGAAGAGGAGGGTAAGGTTG+AGG 0.435286 5.2:-80847426 MS.gene81288:CDS
CATGAAGGCACAGGCTTTGA+GGG 0.435413 5.2:-80846358 MS.gene81288:CDS
ACAAGATTCTTAAGGTCATC+AGG 0.437555 5.2:-80846980 MS.gene81288:CDS
CAACCCCGAGAACCCCATAA+TGG 0.440515 5.2:-80846289 MS.gene81288:CDS
GTTAGCATGATTGGACAGTT+TGG 0.443805 5.2:-80847767 MS.gene81288:CDS
TTTGTGTCAAAGAGATCAAA+AGG 0.446679 5.2:+80847155 None:intergenic
CTAGTGTCTGCAACTAAAGA+AGG 0.450314 5.2:-80846576 MS.gene81288:CDS
AATGATAGTCAAGGTGTTGT+TGG 0.456218 5.2:+80847993 None:intergenic
CCTTGAGAAGCTTAGGAAGA+AGG 0.459680 5.2:-80846676 MS.gene81288:CDS
CAAGAGTCTCACCAATGATT+GGG 0.462392 5.2:-80847258 MS.gene81288:CDS
CAAATGCTCTTCCCAATCAT+TGG 0.463958 5.2:+80847247 None:intergenic
TCGTCCTTTGTGATCTCCTC+AGG 0.466562 5.2:+80847296 None:intergenic
TGGTCAGCTCAAGGAATTTG+AGG 0.468755 5.2:-80846607 MS.gene81288:CDS
TTGAGGGATAGCAGCATGGC+TGG 0.470021 5.2:-80846342 MS.gene81288:CDS
GGTGGTAACAATAACCTTCT+CGG 0.473999 5.2:+80847715 None:intergenic
ACCTTGACTATCATTGATAG+TGG 0.474059 5.2:-80847985 MS.gene81288:CDS
TCATGAAGGCACAGGCTTTG+AGG 0.476598 5.2:-80846359 MS.gene81288:CDS
TATGGCTTCCATGAATTCCT+TGG 0.477216 5.2:+80847805 None:intergenic
AGTGAATGACCCACCAGCTT+GGG 0.479426 5.2:+80847658 None:intergenic
TGAGGACGAGGAAGAGAAGA+AGG 0.480741 5.2:-80847447 MS.gene81288:CDS
AGAATCAAGCTTGCTCTTGT+CGG 0.482487 5.2:+80848053 None:intergenic
AGATCAAAAGGTGCTCTCTT+CGG 0.483306 5.2:+80847167 None:intergenic
CAACTGGTGAAGCTCTTGGC+AGG 0.483720 5.2:-80847622 MS.gene81288:CDS
CTTTGAAATTGCTGAGAACA+AGG 0.486596 5.2:-80846925 MS.gene81288:CDS
GGAAGAGAAGAAGGAAGAGG+AGG 0.487208 5.2:-80847438 MS.gene81288:CDS
TGTTAAGCACTTCTCTGTTG+AGG 0.488225 5.2:-80847222 MS.gene81288:CDS
CATGTCATCACCACTCTTGG+TGG 0.488480 5.2:+80846797 None:intergenic
ATTCTGTCCTTCCTTCATCC+TGG 0.488551 5.2:+80846752 None:intergenic
GTTAAGCACTTCTCTGTTGA+GGG 0.489262 5.2:-80847221 MS.gene81288:CDS
CAAAGCTTGCTGATTTGCTC+AGG 0.489387 5.2:-80846827 MS.gene81288:CDS
AACATCAGCACCAGCAGCTA+TGG 0.489580 5.2:+80847787 None:intergenic
ATTTCTCTTGAAATGTTAAG+TGG 0.491469 5.2:+80847014 None:intergenic
CTTCTCTAAGAACTTGAAGC+TGG 0.492825 5.2:-80846877 MS.gene81288:CDS
GGTGTCTAATGAATGGTCTT+TGG 0.492991 5.2:-80847351 MS.gene81288:CDS
TAGCTTTGTGAAGGGTATTG+TGG 0.493429 5.2:-80847051 MS.gene81288:CDS
GGAACGCCGTCTGAAGGACT+TGG 0.493605 5.2:-80847549 MS.gene81288:CDS
AACAGCTTTCTTGCTTTCAC+CGG 0.494202 5.2:+80846713 None:intergenic
CTTCTCTGTTGAGGGACAGT+TGG 0.494681 5.2:-80847213 MS.gene81288:CDS
CTTCCTAAGCTTCTCAAGGA+AGG 0.495109 5.2:+80846680 None:intergenic
CAATCTTTGCAAGGTGATCA+AGG 0.496155 5.2:-80846490 MS.gene81288:CDS
AGCTTCACCAGTTGTATCCC+TGG 0.498334 5.2:+80847631 None:intergenic
AGTAGATGAGGAGAAAGAAA+AGG 0.499471 5.2:-80847402 MS.gene81288:CDS
GGGTGACAAGGTTGAGAAAG+TGG 0.499707 5.2:-80846460 MS.gene81288:CDS
CTTCACAAAGCTAAGATACT+CGG 0.499785 5.2:+80847061 None:intergenic
TTCATCATCATTGTGCTTGG+TGG 0.500075 5.2:+80847697 None:intergenic
GGAATTGGAATGACCAAAGC+TGG 0.500501 5.2:-80847964 MS.gene81288:intron
GATACAACTGGTGAAGCTCT+TGG 0.501895 5.2:-80847626 MS.gene81288:CDS
CTAGGTACCATTGCTAGGTC+TGG 0.502477 5.2:-80847830 MS.gene81288:CDS
TGCTTACCTTGTTGCCGAGA+AGG 0.502623 5.2:-80847729 MS.gene81288:CDS
GAAGAGAAGAAGGAAGAGGA+GGG 0.502813 5.2:-80847437 MS.gene81288:CDS
TCTCCTTGCTGTTTAGTGAC+TGG 0.506819 5.2:-80846414 MS.gene81288:CDS
CTTGAGAAGCTTAGGAAGAA+GGG 0.508184 5.2:-80846675 MS.gene81288:CDS
CAAGGTGATCAAGGAGGTGT+TGG 0.509412 5.2:-80846481 MS.gene81288:CDS
TTCCTAAGCTTCTCAAGGAA+GGG 0.510661 5.2:+80846681 None:intergenic
GTGGGTCATTCACTGTGACC+AGG 0.512028 5.2:-80847649 MS.gene81288:CDS
TCCTAAGCTTCTCAAGGAAG+GGG 0.515007 5.2:+80846682 None:intergenic
TAAGGTCATCAGGAAGAACT+TGG 0.516506 5.2:-80846970 MS.gene81288:CDS
CTTCATGATCCTCTCCATGT+TGG 0.521693 5.2:+80846374 None:intergenic
ATGATTGGACAGTTTGGTGT+TGG 0.524590 5.2:-80847761 MS.gene81288:CDS
TGCTGACATGCCACCATTGG+AGG 0.530142 5.2:-80846079 MS.gene81288:CDS
ATCCTGTTGCCAAAAGTGTT+GGG 0.532827 5.2:+80846156 None:intergenic
ATTCACAGGATGCTCAAGCT+TGG 0.534491 5.2:-80846135 MS.gene81288:CDS
TCAGCATCAGCTTCCTCCAA+TGG 0.535356 5.2:+80846066 None:intergenic
CATTGCTAGGTCTGGTACCA+AGG 0.535688 5.2:-80847822 MS.gene81288:CDS
TTAAGGAGGTGTCTAATGAA+TGG 0.538054 5.2:-80847358 MS.gene81288:CDS
AATCCTGTTGCCAAAAGTGT+TGG 0.544511 5.2:+80846155 None:intergenic
CTGTTCATCATCATTGTGCT+TGG 0.544768 5.2:+80847694 None:intergenic
TGATGCTGACATGCCACCAT+TGG 0.545200 5.2:-80846082 MS.gene81288:CDS
TAAGGTTGAGGAAGTAGATG+AGG 0.545318 5.2:-80847414 MS.gene81288:CDS
CGAGTATCTTAGCTTTGTGA+AGG 0.545418 5.2:-80847060 MS.gene81288:CDS
TTCATGGAAGCCATAGCTGC+TGG 0.547466 5.2:-80847797 MS.gene81288:CDS
GGTCAGCTCAAGGAATTTGA+GGG 0.548038 5.2:-80846606 MS.gene81288:CDS
TCCTCAGCTCCTCCATTATG+GGG 0.548965 5.2:+80846277 None:intergenic
ACCAACAGCATATTCATCAA+TGG 0.549314 5.2:+80846626 None:intergenic
GTGTGGGAGTCCCAAGCTGG+TGG 0.550695 5.2:-80847668 MS.gene81288:CDS
GGAGAGGATCATGAAGGCAC+AGG 0.554892 5.2:-80846367 MS.gene81288:CDS
CCTTCTTCCTAAGCTTCTCA+AGG 0.555668 5.2:+80846676 None:intergenic
CAGCTTCAAGTTCTTAGAGA+AGG 0.556190 5.2:+80846878 None:intergenic
GGAAACGTGCTGATGCGGAC+AGG 0.560251 5.2:-80846257 MS.gene81288:CDS
TAAAATAACTCTCATCCTCA+AGG 0.561419 5.2:-80847594 MS.gene81288:CDS
TAGTGACTGGTGAGTATGGT+TGG 0.563826 5.2:-80846401 MS.gene81288:CDS
CCAGATTTGGTGAACAACCT+AGG 0.564348 5.2:-80847848 MS.gene81288:intron
CAGTGAATGACCCACCAGCT+TGG 0.566153 5.2:+80847657 None:intergenic
GGACTATGTTACCAGGATGA+AGG 0.567325 5.2:-80846763 MS.gene81288:CDS
GAAAGAGATTTCTGATGATG+AGG 0.568419 5.2:-80847465 MS.gene81288:CDS
TCTTGAGGAACGCCGTCTGA+AGG 0.568654 5.2:-80847555 MS.gene81288:CDS
CAAAAGTGTTGGGCTCATCA+AGG 0.569013 5.2:+80846166 None:intergenic
ATAATGTGAATGAACAACTC+TGG 0.569519 5.2:+80848027 None:intergenic
ACTGTGACCAGGGATACAAC+TGG 0.570046 5.2:-80847638 MS.gene81288:CDS
AGAGGGAAGCAAGATGGAAG+AGG 0.571151 5.2:-80846040 MS.gene81288:CDS
CAATAACCTTCTCGGCAACA+AGG 0.573151 5.2:+80847723 None:intergenic
TTCTCTAAGAACTTGAAGCT+GGG 0.573524 5.2:-80846876 MS.gene81288:CDS
TGGGTCATTCACTGTGACCA+GGG 0.573714 5.2:-80847648 MS.gene81288:CDS
CAAGGAGGTGTTGGGTGACA+AGG 0.575150 5.2:-80846472 MS.gene81288:CDS
GGTAACATAGTCCTTGAGGC+TGG 0.577318 5.2:+80846773 None:intergenic
GGGATATGAAGTGATTTACA+TGG 0.578493 5.2:-80846655 MS.gene81288:CDS
ACAACCTAGGTACCATTGCT+AGG 0.579010 5.2:-80847835 MS.gene81288:CDS
TCTCAAACAGCAAGAGAACA+AGG 0.580225 5.2:+80846214 None:intergenic
TGTCGGTCAAGCCCTCAAAA+CGG 0.582332 5.2:+80848070 None:intergenic
AGCAGAAGCCTATTTGGATG+AGG 0.584932 5.2:-80847322 MS.gene81288:CDS
ACTGGTGAAGCTCTTGGCAG+GGG 0.584964 5.2:-80847620 MS.gene81288:CDS
GAAGTTGATTGATCTCAGCC+TGG 0.587212 5.2:+80848985 None:intergenic
AACTGGTGAAGCTCTTGGCA+GGG 0.587596 5.2:-80847621 MS.gene81288:CDS
GCTGAGGAAACGTGCTGATG+CGG 0.588607 5.2:-80846262 MS.gene81288:CDS
TTCACAAAGCTAAGATACTC+GGG 0.588682 5.2:+80847062 None:intergenic
CAGACCTAGCAATGGTACCT+AGG 0.590700 5.2:+80847831 None:intergenic
CATCACCACTCTTGGTGGAG+TGG 0.592725 5.2:+80846802 None:intergenic
GGCTTTGAGGGATAGCAGCA+TGG 0.597369 5.2:-80846346 MS.gene81288:CDS
AGACTACAACAAGTTCTATG+AGG 0.598933 5.2:-80846901 MS.gene81288:CDS
ATATGCTGTTGGTCAGCTCA+AGG 0.599835 5.2:-80846616 MS.gene81288:CDS
GAAGTTCGACAATCTTTGCA+AGG 0.601872 5.2:-80846499 MS.gene81288:CDS
GAAGCTGATGCTGATGCAGA+GGG 0.602230 5.2:-80846057 MS.gene81288:CDS
ACCCCATAATGGAGGAGCTG+AGG 0.602360 5.2:-80846278 MS.gene81288:CDS
TGATGCAGAGGGAAGCAAGA+TGG 0.604134 5.2:-80846046 MS.gene81288:CDS
GATTTCTGATGATGAGGACG+AGG 0.608743 5.2:-80847459 MS.gene81288:CDS
TCCTGGTAACATAGTCCTTG+AGG 0.608835 5.2:+80846769 None:intergenic
TAGTGTCTGCAACTAAAGAA+GGG 0.609080 5.2:-80846575 MS.gene81288:CDS
GCCTCAAGGACTATGTTACC+AGG 0.610223 5.2:-80846770 MS.gene81288:CDS
CATGTCAAGCAAGAAGACAA+TGG 0.611061 5.2:-80846316 MS.gene81288:CDS
TATGTGTGGGAGTCCCAAGC+TGG 0.615041 5.2:-80847671 MS.gene81288:CDS
TCCACTATCAATGATAGTCA+AGG 0.615433 5.2:+80847984 None:intergenic
GCCATTGATGAATATGCTGT+TGG 0.617134 5.2:-80846627 MS.gene81288:CDS
GCTTGGTCTTAGCATTGATG+AGG 0.619021 5.2:-80846118 MS.gene81288:CDS
CAACATGGAGAGGATCATGA+AGG 0.620851 5.2:-80846373 MS.gene81288:CDS
CCTCCATTATGGGGTTCTCG+GGG 0.620923 5.2:+80846286 None:intergenic
GTTGAAACTTGACGAGAGTG+AGG 0.621123 5.2:-80846553 MS.gene81288:CDS
GGATCAACTTGAGTATCTTG+AGG 0.629396 5.2:-80847570 MS.gene81288:CDS
GAGTATCTTAGCTTTGTGAA+GGG 0.631738 5.2:-80847059 MS.gene81288:CDS
AGCAAGGAGAATCGACAACA+CGG 0.631988 5.2:+80846427 None:intergenic
AGGTACCACTCCACCAAGAG+TGG 0.636721 5.2:-80846807 MS.gene81288:CDS
CAGGAATGACAAATCTGTCA+AGG 0.640894 5.2:-80846238 MS.gene81288:CDS
GTATGGTTGGACTGCCAACA+TGG 0.641083 5.2:-80846388 MS.gene81288:CDS
ACTCAAGTTGATCCTCCTTG+AGG 0.641638 5.2:+80847579 None:intergenic
TCTTAACCAAGTCCTTCAGA+CGG 0.644789 5.2:+80847543 None:intergenic
TGTGGGAGTCCCAAGCTGGT+GGG 0.646830 5.2:-80847667 MS.gene81288:CDS
GCATCAGCTTCCTCCAATGG+TGG 0.651686 5.2:+80846069 None:intergenic
CCCCGAGAACCCCATAATGG+AGG 0.653113 5.2:-80846286 MS.gene81288:CDS
AAGGTGATCAAGGAGGTGTT+GGG 0.654251 5.2:-80846480 MS.gene81288:CDS
TGATGACATGACCAGCCTCA+AGG 0.657377 5.2:-80846784 MS.gene81288:CDS
CCTAAGCTTCTCAAGGAAGG+GGG 0.664638 5.2:+80846683 None:intergenic
GTTGGACTGCCAACATGGAG+AGG 0.668192 5.2:-80846383 MS.gene81288:CDS
TATGTTACCAGGATGAAGGA+AGG 0.670222 5.2:-80846759 MS.gene81288:CDS
GGAAGCTGATGCTGATGCAG+AGG 0.671926 5.2:-80846058 MS.gene81288:CDS
ATGATGATGAACAGTATGTG+TGG 0.676362 5.2:-80847685 MS.gene81288:CDS
AGTTGTCCATGATGAAAACA+CGG 0.681053 5.2:+80847099 None:intergenic
TCACCAGTCACTAAACAGCA+AGG 0.682332 5.2:+80846411 None:intergenic
GAAGGGTATTGTGGACTCTG+AGG 0.693168 5.2:-80847042 MS.gene81288:CDS
CTTGAAGCTGGGTATCCATG+AGG 0.697436 5.2:-80846865 MS.gene81288:CDS
AATAACTCTCATCCTCAAGG+AGG 0.699652 5.2:-80847591 MS.gene81288:CDS
CTTGGTACCAGACCTAGCAA+TGG 0.700707 5.2:+80847823 None:intergenic
CAATTTCAAAGAAAAGCTCG+AGG 0.701411 5.2:+80846937 None:intergenic
TTTCATCATGGACAACTGTG+AGG 0.702798 5.2:-80847093 MS.gene81288:CDS
GAAGCCTGAGGAGATCACAA+AGG 0.711808 5.2:-80847300 MS.gene81288:CDS
TGATGATGAACAGTATGTGT+GGG 0.717373 5.2:-80847684 MS.gene81288:CDS
TATTTGGATGAGGAAGCCTG+AGG 0.739589 5.2:-80847312 MS.gene81288:CDS
TCTTTGCAAGGTGATCAAGG+AGG 0.803604 5.2:-80846487 MS.gene81288:CDS
TGTCCATGATGAAAACACGG+CGG 0.827708 5.2:+80847102 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATTCAATTTCAATT+TGG + chr5.2:80846534-80846553 None:intergenic 10.0%
!! TTAAAATTCAATTTCAATTT+GGG + chr5.2:80846533-80846552 None:intergenic 10.0%
!!! AAATTGAATTTTAATTAGTT+CGG - chr5.2:80846539-80846558 MS.gene81288:CDS 10.0%
!!! GTATTATTTTATCAATTTTA+GGG - chr5.2:80846267-80846286 MS.gene81288:CDS 10.0%
!! ACTTTCATTCATATAATTAA+AGG + chr5.2:80846647-80846666 None:intergenic 15.0%
!! ACTTTCTTTCAAAAAATTAA+AGG + chr5.2:80846770-80846789 None:intergenic 15.0%
!! TATAATTGTTACTAATACTT+TGG - chr5.2:80846834-80846853 MS.gene81288:CDS 15.0%
!!! AATTCAATTCTAAAACTAAA+AGG + chr5.2:80846738-80846757 None:intergenic 15.0%
!!! ATGATTTTGATGAATTTTTT+CGG - chr5.2:80846229-80846248 MS.gene81288:CDS 15.0%
!!! ATTCAATTCTAAAACTAAAA+GGG + chr5.2:80846737-80846756 None:intergenic 15.0%
!!! GGTATTATTTTATCAATTTT+AGG - chr5.2:80846266-80846285 MS.gene81288:CDS 15.0%
!!! TAACTCTTTAATTTTTTGAA+TGG - chr5.2:80846699-80846718 MS.gene81288:CDS 15.0%
!!! TTTTTTCTTTTTGTTTCTTA+GGG - chr5.2:80846178-80846197 MS.gene81288:CDS 15.0%
!!! TTTTTTTCTTTTTGTTTCTT+AGG - chr5.2:80846177-80846196 MS.gene81288:CDS 15.0%
!! AAAAAATAGATCACATGATT+AGG + chr5.2:80846582-80846601 None:intergenic 20.0%
!! AAAAATAGATCACATGATTA+GGG + chr5.2:80846581-80846600 None:intergenic 20.0%
!! GTTAATTGAATATGTTGTTA+GGG - chr5.2:80846295-80846314 MS.gene81288:CDS 20.0%
!! GTTGTTCTGATTATTATATT+GGG - chr5.2:80846922-80846941 MS.gene81288:CDS 20.0%
!! TCAACTATGAAACATATATT+CGG + chr5.2:80846484-80846503 None:intergenic 20.0%
!! TGTTAATTGAATATGTTGTT+AGG - chr5.2:80846294-80846313 MS.gene81288:CDS 20.0%
!! TGTTGTTCTGATTATTATAT+TGG - chr5.2:80846921-80846940 MS.gene81288:CDS 20.0%
!!! TTTTTGAAAGAAAGTTGTTT+GGG - chr5.2:80846775-80846794 MS.gene81288:CDS 20.0%
!!! TTTTTTGAAAGAAAGTTGTT+TGG - chr5.2:80846774-80846793 MS.gene81288:CDS 20.0%
! AATGACATTTACTACATTAC+CGG - chr5.2:80848311-80848330 MS.gene81288:intron 25.0%
! AATGATGATTTAGTTGTTGT+GGG - chr5.2:80846892-80846911 MS.gene81288:CDS 25.0%
! ATTTCTCTTGAAATGTTAAG+TGG + chr5.2:80848032-80848051 None:intergenic 25.0%
! GAAGAAAAAGAAGAAGATTA+AGG - chr5.2:80847668-80847687 MS.gene81288:CDS 25.0%
! TAATGATGATTTAGTTGTTG+TGG - chr5.2:80846891-80846910 MS.gene81288:CDS 25.0%
!! GTTATTGTCAATGTTATTTG+AGG - chr5.2:80846811-80846830 MS.gene81288:CDS 25.0%
!! TTAATTAGTTCGGTTTGTAT+TGG - chr5.2:80846549-80846568 MS.gene81288:CDS 25.0%
!! TTTTCGGTTATGATTCTTAT+TGG - chr5.2:80846245-80846264 MS.gene81288:CDS 25.0%
!!! ATGATTTGTTAGTCATGTTT+AGG - chr5.2:80846383-80846402 MS.gene81288:CDS 25.0%
!!! GTTTTAGAATTGAATTTGCA+TGG - chr5.2:80846742-80846761 MS.gene81288:CDS 25.0%
AAAAGAAAAAAAGAGCGAAG+AGG + chr5.2:80846169-80846188 None:intergenic 30.0%
AATCTCCTTGTTACTGTAAA+AGG + chr5.2:80846102-80846121 None:intergenic 30.0%
ATAATGTGAATGAACAACTC+TGG + chr5.2:80847019-80847038 None:intergenic 30.0%
CTGTATTTATGTTCCAGATT+TGG - chr5.2:80847182-80847201 MS.gene81288:CDS 30.0%
GAAAAAGAAGAAGATTAAGG+AGG - chr5.2:80847671-80847690 MS.gene81288:CDS 30.0%
TAAAATAACTCTCATCCTCA+AGG - chr5.2:80847449-80847468 MS.gene81288:CDS 30.0%
TAGCTATCCAATTTCTCTTT+GGG - chr5.2:80847539-80847558 MS.gene81288:CDS 30.0%
TCAACAGAACAAGATTCTTA+AGG - chr5.2:80848055-80848074 MS.gene81288:CDS 30.0%
TGAGGATGAAAAGAAAAAGA+TGG - chr5.2:80848508-80848527 MS.gene81288:intron 30.0%
TTAGCTATCCAATTTCTCTT+TGG - chr5.2:80847538-80847557 MS.gene81288:CDS 30.0%
TTTGTGTCAAAGAGATCAAA+AGG + chr5.2:80847891-80847910 None:intergenic 30.0%
! GAATATGTTGTTAGGGTTTT+GGG - chr5.2:80846302-80846321 MS.gene81288:CDS 30.0%
! TACTGTGTAACATTTTCACT+TGG - chr5.2:80846607-80846626 MS.gene81288:CDS 30.0%
! TGAATATGTTGTTAGGGTTT+TGG - chr5.2:80846301-80846320 MS.gene81288:CDS 30.0%
!! ACTATCATTGATAGTGGAAT+TGG - chr5.2:80847064-80847083 MS.gene81288:CDS 30.0%
!! ATACTTTGGAATATCAGTGT+TGG - chr5.2:80846848-80846867 MS.gene81288:CDS 30.0%
!! GAATATCAGTGTTGGATTTT+TGG - chr5.2:80846856-80846875 MS.gene81288:CDS 30.0%
ACAAGATTCTTAAGGTCATC+AGG - chr5.2:80848063-80848082 MS.gene81288:CDS 35.0%
ACATACAGCTTGATGTTGTT+GGG + chr5.2:80847921-80847940 None:intergenic 35.0%
ACCAACAGCATATTCATCAA+TGG + chr5.2:80848420-80848439 None:intergenic 35.0%
ACCTTGACTATCATTGATAG+TGG - chr5.2:80847058-80847077 MS.gene81288:CDS 35.0%
AGACTACAACAAGTTCTATG+AGG - chr5.2:80848142-80848161 MS.gene81288:intron 35.0%
AGTAGATGAGGAGAAAGAAA+AGG - chr5.2:80847641-80847660 MS.gene81288:CDS 35.0%
AGTTGTCCATGATGAAAACA+CGG + chr5.2:80847947-80847966 None:intergenic 35.0%
ATATTGGGATGCTGTAATGT+AGG - chr5.2:80846937-80846956 MS.gene81288:CDS 35.0%
CAATTTCAAAGAAAAGCTCG+AGG + chr5.2:80848109-80848128 None:intergenic 35.0%
CTTCACAAAGCTAAGATACT+CGG + chr5.2:80847985-80848004 None:intergenic 35.0%
GAAAAAGATGGAAGAACAGA+AGG - chr5.2:80848520-80848539 MS.gene81288:intron 35.0%
GGGATATGAAGTGATTTACA+TGG - chr5.2:80848388-80848407 MS.gene81288:intron 35.0%
TAGTGTCTGCAACTAAAGAA+GGG - chr5.2:80848468-80848487 MS.gene81288:intron 35.0%
TCCACTATCAATGATAGTCA+AGG + chr5.2:80847062-80847081 None:intergenic 35.0%
TTCACAAAGCTAAGATACTC+GGG + chr5.2:80847984-80848003 None:intergenic 35.0%
TTCTCAACCCAAAGAGAAAT+TGG + chr5.2:80847549-80847568 None:intergenic 35.0%
! ATGATGATGAACAGTATGTG+TGG - chr5.2:80847358-80847377 MS.gene81288:CDS 35.0%
! CAACACCTTTTACAGTAACA+AGG - chr5.2:80846094-80846113 MS.gene81288:CDS 35.0%
! GAAAGAGATTTCTGATGATG+AGG - chr5.2:80847578-80847597 MS.gene81288:CDS 35.0%
! TGATGATGAACAGTATGTGT+GGG - chr5.2:80847359-80847378 MS.gene81288:CDS 35.0%
! TTCTCTAAGAACTTGAAGCT+GGG - chr5.2:80848167-80848186 MS.gene81288:intron 35.0%
! TTGGATAAGATCCGTTTTGA+GGG - chr5.2:80846962-80846981 MS.gene81288:CDS 35.0%
! TTTGGATAAGATCCGTTTTG+AGG - chr5.2:80846961-80846980 MS.gene81288:CDS 35.0%
!! AATGATAGTCAAGGTGTTGT+TGG + chr5.2:80847053-80847072 None:intergenic 35.0%
!! CTTTGAAATTGCTGAGAACA+AGG - chr5.2:80848118-80848137 MS.gene81288:intron 35.0%
!! GAGTATCTTAGCTTTGTGAA+GGG - chr5.2:80847984-80848003 MS.gene81288:CDS 35.0%
!! GTTAGCATGAACTCTGAAAT+TGG - chr5.2:80847105-80847124 MS.gene81288:CDS 35.0%
!! TTAAGGAGGTGTCTAATGAA+TGG - chr5.2:80847685-80847704 MS.gene81288:CDS 35.0%
!!! TCTTGTTTTGAGAATCCTCA+TGG + chr5.2:80848196-80848215 None:intergenic 35.0%
AACAGCTTTCTTGCTTTCAC+CGG + chr5.2:80848333-80848352 None:intergenic 40.0%
AATAACTCTCATCCTCAAGG+AGG - chr5.2:80847452-80847471 MS.gene81288:CDS 40.0%
ACAAGAGTCTCACCAATGAT+TGG - chr5.2:80847784-80847803 MS.gene81288:CDS 40.0%
CAAATGCTCTTCCCAATCAT+TGG + chr5.2:80847799-80847818 None:intergenic 40.0%
CAAGAGTCTCACCAATGATT+GGG - chr5.2:80847785-80847804 MS.gene81288:CDS 40.0%
CAATCTTTGCAAGGTGATCA+AGG - chr5.2:80848553-80848572 MS.gene81288:intron 40.0%
CAGGAATGACAAATCTGTCA+AGG - chr5.2:80848805-80848824 MS.gene81288:intron 40.0%
CATGTCAAGCAAGAAGACAA+TGG - chr5.2:80848727-80848746 MS.gene81288:intron 40.0%
CTAGTGTCTGCAACTAAAGA+AGG - chr5.2:80848467-80848486 MS.gene81288:intron 40.0%
CTGTTCATCATCATTGTGCT+TGG + chr5.2:80847352-80847371 None:intergenic 40.0%
CTTGAGAAGCTTAGGAAGAA+GGG - chr5.2:80848368-80848387 MS.gene81288:intron 40.0%
GAAGAGGAAGAAGCTTACAT+CGG + chr5.2:80846153-80846172 None:intergenic 40.0%
GAAGTTCGACAATCTTTGCA+AGG - chr5.2:80848544-80848563 MS.gene81288:intron 40.0%
GACATACAGCTTGATGTTGT+TGG + chr5.2:80847922-80847941 None:intergenic 40.0%
GCCATTGATGAATATGCTGT+TGG - chr5.2:80848416-80848435 MS.gene81288:intron 40.0%
GGATCAACTTGAGTATCTTG+AGG - chr5.2:80847473-80847492 MS.gene81288:CDS 40.0%
GGTGGTAACAATAACCTTCT+CGG + chr5.2:80847331-80847350 None:intergenic 40.0%
GGTGTCTAATGAATGGTCTT+TGG - chr5.2:80847692-80847711 MS.gene81288:CDS 40.0%
GTTAAGCACTTCTCTGTTGA+GGG - chr5.2:80847822-80847841 MS.gene81288:CDS 40.0%
GTTAGCATGATTGGACAGTT+TGG - chr5.2:80847276-80847295 MS.gene81288:CDS 40.0%
TAAGGTCATCAGGAAGAACT+TGG - chr5.2:80848073-80848092 MS.gene81288:CDS 40.0%
TAAGGTTGAGGAAGTAGATG+AGG - chr5.2:80847629-80847648 MS.gene81288:CDS 40.0%
TATGGCTTCCATGAATTCCT+TGG + chr5.2:80847241-80847260 None:intergenic 40.0%
TATGTTACCAGGATGAAGGA+AGG - chr5.2:80848284-80848303 MS.gene81288:intron 40.0%
TCATGCTAACTTACCAGCTT+TGG + chr5.2:80847095-80847114 None:intergenic 40.0%
TCTCAAACAGCAAGAGAACA+AGG + chr5.2:80848832-80848851 None:intergenic 40.0%
TCTTAACCAAGTCCTTCAGA+CGG + chr5.2:80847503-80847522 None:intergenic 40.0%
TGAACAAGCAGAAGCCTATT+TGG - chr5.2:80847715-80847734 MS.gene81288:CDS 40.0%
TGTTAAGCACTTCTCTGTTG+AGG - chr5.2:80847821-80847840 MS.gene81288:CDS 40.0%
TGTTTAGTGACTGGTGAGTA+TGG - chr5.2:80848638-80848657 MS.gene81288:intron 40.0%
TTCATCATCATTGTGCTTGG+TGG + chr5.2:80847349-80847368 None:intergenic 40.0%
TTCCTAAGCTTCTCAAGGAA+GGG + chr5.2:80848365-80848384 None:intergenic 40.0%
TTTCATCATGGACAACTGTG+AGG - chr5.2:80847950-80847969 MS.gene81288:intron 40.0%
! AATCCTGTTGCCAAAAGTGT+TGG + chr5.2:80848891-80848910 None:intergenic 40.0%
! AGAATCAAGCTTGCTCTTGT+CGG + chr5.2:80846993-80847012 None:intergenic 40.0%
! CAGCTTCAAGTTCTTAGAGA+AGG + chr5.2:80848168-80848187 None:intergenic 40.0%
! CTTCTCTAAGAACTTGAAGC+TGG - chr5.2:80848166-80848185 MS.gene81288:intron 40.0%
!! AGATCAAAAGGTGCTCTCTT+CGG + chr5.2:80847879-80847898 None:intergenic 40.0%
!! ATCCTGTTGCCAAAAGTGTT+GGG + chr5.2:80848890-80848909 None:intergenic 40.0%
!! ATGATTGGACAGTTTGGTGT+TGG - chr5.2:80847282-80847301 MS.gene81288:CDS 40.0%
!! CAATGATTGGGAAGAGCATT+TGG - chr5.2:80847797-80847816 MS.gene81288:CDS 40.0%
!! CGAGTATCTTAGCTTTGTGA+AGG - chr5.2:80847983-80848002 MS.gene81288:CDS 40.0%
!! TAGCTTTGTGAAGGGTATTG+TGG - chr5.2:80847992-80848011 MS.gene81288:CDS 40.0%
ACAACCTAGGTACCATTGCT+AGG - chr5.2:80847208-80847227 MS.gene81288:CDS 45.0%
ACAAGAGACGTTTGCTTTCC+AGG - chr5.2:80846040-80846059 MS.gene81288:CDS 45.0%
AGCAAGGAGAATCGACAACA+CGG + chr5.2:80848619-80848638 None:intergenic 45.0%
AGCAGAAGCCTATTTGGATG+AGG - chr5.2:80847721-80847740 MS.gene81288:CDS 45.0%
ATATGCTGTTGGTCAGCTCA+AGG - chr5.2:80848427-80848446 MS.gene81288:intron 45.0%
ATTCACAGGATGCTCAAGCT+TGG - chr5.2:80848908-80848927 MS.gene81288:intron 45.0%
ATTCTGTCCTTCCTTCATCC+TGG + chr5.2:80848294-80848313 None:intergenic 45.0%
CAACATGGAGAGGATCATGA+AGG - chr5.2:80848670-80848689 MS.gene81288:intron 45.0%
CAATAACCTTCTCGGCAACA+AGG + chr5.2:80847323-80847342 None:intergenic 45.0%
CCTAGGTTGTTCACCAAATC+TGG + chr5.2:80847198-80847217 None:intergenic 45.0%
CCTTCTTCCTAAGCTTCTCA+AGG + chr5.2:80848370-80848389 None:intergenic 45.0%
CCTTGAGAAGCTTAGGAAGA+AGG - chr5.2:80848367-80848386 MS.gene81288:intron 45.0%
CTTCATGATCCTCTCCATGT+TGG + chr5.2:80848672-80848691 None:intergenic 45.0%
CTTCCTAAGCTTCTCAAGGA+AGG + chr5.2:80848366-80848385 None:intergenic 45.0%
GAAGAGAAGAAGGAAGAGGA+GGG - chr5.2:80847606-80847625 MS.gene81288:CDS 45.0%
GAGACTGCTCTTCTTACTTC+TGG - chr5.2:80848848-80848867 MS.gene81288:intron 45.0%
GATACAACTGGTGAAGCTCT+TGG - chr5.2:80847417-80847436 MS.gene81288:CDS 45.0%
GGAATTGGAATGACCAAAGC+TGG - chr5.2:80847079-80847098 MS.gene81288:CDS 45.0%
GGACTATGTTACCAGGATGA+AGG - chr5.2:80848280-80848299 MS.gene81288:intron 45.0%
GGATGCTGTAATGTAGGCTT+TGG - chr5.2:80846943-80846962 MS.gene81288:CDS 45.0%
GGTCAGCTCAAGGAATTTGA+GGG - chr5.2:80848437-80848456 MS.gene81288:intron 45.0%
GTCTGGTACCAAGGAATTCA+TGG - chr5.2:80847230-80847249 MS.gene81288:CDS 45.0%
GTTGAAACTTGACGAGAGTG+AGG - chr5.2:80848490-80848509 MS.gene81288:intron 45.0%
TAGTGACTGGTGAGTATGGT+TGG - chr5.2:80848642-80848661 MS.gene81288:intron 45.0%
TATTTGGATGAGGAAGCCTG+AGG - chr5.2:80847731-80847750 MS.gene81288:CDS 45.0%
TCACCAGTCACTAAACAGCA+AGG + chr5.2:80848635-80848654 None:intergenic 45.0%
TCAGGCTTCCTCATCCAAAT+AGG + chr5.2:80847732-80847751 None:intergenic 45.0%
TCCTAAGCTTCTCAAGGAAG+GGG + chr5.2:80848364-80848383 None:intergenic 45.0%
TCCTGGTAACATAGTCCTTG+AGG + chr5.2:80848277-80848296 None:intergenic 45.0%
TCTTTGCAAGGTGATCAAGG+AGG - chr5.2:80848556-80848575 MS.gene81288:intron 45.0%
TGAGGGACAGTTGGAGTTTA+AGG - chr5.2:80847839-80847858 MS.gene81288:CDS 45.0%
TGGTCAGCTCAAGGAATTTG+AGG - chr5.2:80848436-80848455 MS.gene81288:intron 45.0%
TGTCCATGATGAAAACACGG+CGG + chr5.2:80847944-80847963 None:intergenic 45.0%
TTCCTCAGCTCCTCCATTAT+GGG + chr5.2:80848770-80848789 None:intergenic 45.0%
TTTCCTCAGCTCCTCCATTA+TGG + chr5.2:80848771-80848790 None:intergenic 45.0%
! CTTGATGAGCCCAACACTTT+TGG - chr5.2:80848878-80848897 MS.gene81288:intron 45.0%
! CTTTTGGCAACAGGATTCAC+AGG - chr5.2:80848894-80848913 MS.gene81288:intron 45.0%
! GAAGTTGATTGATCTCAGCC+TGG + chr5.2:80846061-80846080 None:intergenic 45.0%
! GATTTCTGATGATGAGGACG+AGG - chr5.2:80847584-80847603 MS.gene81288:CDS 45.0%
!! AAGGTGATCAAGGAGGTGTT+GGG - chr5.2:80848563-80848582 MS.gene81288:intron 45.0%
!! AAGGTGTTGTTGGTCTTGTC+AGG + chr5.2:80847043-80847062 None:intergenic 45.0%
!! ACTCAAGTTGATCCTCCTTG+AGG + chr5.2:80847467-80847486 None:intergenic 45.0%
!! CAAAAGTGTTGGGCTCATCA+AGG + chr5.2:80848880-80848899 None:intergenic 45.0%
!! CAAAGCTTGCTGATTTGCTC+AGG - chr5.2:80848216-80848235 MS.gene81288:intron 45.0%
!! CCAGATTTGGTGAACAACCT+AGG - chr5.2:80847195-80847214 MS.gene81288:CDS 45.0%
!! GCTTGGTCTTAGCATTGATG+AGG - chr5.2:80848925-80848944 MS.gene81288:CDS 45.0%
!! GGTGCTGATGTTAGCATGAT+TGG - chr5.2:80847267-80847286 MS.gene81288:CDS 45.0%
!! TCTCCTTGCTGTTTAGTGAC+TGG - chr5.2:80848629-80848648 MS.gene81288:intron 45.0%
AACATCAGCACCAGCAGCTA+TGG + chr5.2:80847259-80847278 None:intergenic 50.0%
AACTGGTGAAGCTCTTGGCA+GGG - chr5.2:80847422-80847441 MS.gene81288:CDS 50.0%
ACTGTGACCAGGGATACAAC+TGG - chr5.2:80847405-80847424 MS.gene81288:CDS 50.0%
AGAGGGAAGCAAGATGGAAG+AGG - chr5.2:80849003-80849022 MS.gene81288:CDS 50.0%
AGCTTCACCAGTTGTATCCC+TGG + chr5.2:80847415-80847434 None:intergenic 50.0%
AGTGAATGACCCACCAGCTT+GGG + chr5.2:80847388-80847407 None:intergenic 50.0%
CAGACCTAGCAATGGTACCT+AGG + chr5.2:80847215-80847234 None:intergenic 50.0%
CATGTCATCACCACTCTTGG+TGG + chr5.2:80848249-80848268 None:intergenic 50.0%
CATTGCTAGGTCTGGTACCA+AGG - chr5.2:80847221-80847240 MS.gene81288:CDS 50.0%
CCTAAGCTTCTCAAGGAAGG+GGG + chr5.2:80848363-80848382 None:intergenic 50.0%
CGAGGAAGAGAAGAAGGAAG+AGG - chr5.2:80847602-80847621 MS.gene81288:CDS 50.0%
CTAGGTACCATTGCTAGGTC+TGG - chr5.2:80847213-80847232 MS.gene81288:CDS 50.0%
CTCCTCCATTATGGGGTTCT+CGG + chr5.2:80848762-80848781 None:intergenic 50.0%
CTTCTCTGTTGAGGGACAGT+TGG - chr5.2:80847830-80847849 MS.gene81288:CDS 50.0%
CTTGAAGCTGGGTATCCATG+AGG - chr5.2:80848178-80848197 MS.gene81288:intron 50.0%
CTTGGTACCAGACCTAGCAA+TGG + chr5.2:80847223-80847242 None:intergenic 50.0%
GAAGAAGGAAGAGGAGGGTA+AGG - chr5.2:80847611-80847630 MS.gene81288:CDS 50.0%
GAAGCCTGAGGAGATCACAA+AGG - chr5.2:80847743-80847762 MS.gene81288:CDS 50.0%
GAAGCTGATGCTGATGCAGA+GGG - chr5.2:80848986-80849005 MS.gene81288:CDS 50.0%
GCCTCAAGGACTATGTTACC+AGG - chr5.2:80848273-80848292 MS.gene81288:intron 50.0%
GGAAGAGAAGAAGGAAGAGG+AGG - chr5.2:80847605-80847624 MS.gene81288:CDS 50.0%
GGGTGACAAGGTTGAGAAAG+TGG - chr5.2:80848583-80848602 MS.gene81288:intron 50.0%
GGTAACATAGTCCTTGAGGC+TGG + chr5.2:80848273-80848292 None:intergenic 50.0%
GGTCATGTCATCACCACTCT+TGG + chr5.2:80848252-80848271 None:intergenic 50.0%
GTATGGTTGGACTGCCAACA+TGG - chr5.2:80848655-80848674 MS.gene81288:intron 50.0%
TCAGCATCAGCTTCCTCCAA+TGG + chr5.2:80848980-80848999 None:intergenic 50.0%
TCCTCAGCTCCTCCATTATG+GGG + chr5.2:80848769-80848788 None:intergenic 50.0%
TCCTCCATTATGGGGTTCTC+GGG + chr5.2:80848761-80848780 None:intergenic 50.0%
TCGTCCTTTGTGATCTCCTC+AGG + chr5.2:80847750-80847769 None:intergenic 50.0%
TGAGGACGAGGAAGAGAAGA+AGG - chr5.2:80847596-80847615 MS.gene81288:CDS 50.0%
TGATGACATGACCAGCCTCA+AGG - chr5.2:80848259-80848278 MS.gene81288:intron 50.0%
TGATGCAGAGGGAAGCAAGA+TGG - chr5.2:80848997-80849016 MS.gene81288:CDS 50.0%
TGATGCTGACATGCCACCAT+TGG - chr5.2:80848961-80848980 MS.gene81288:CDS 50.0%
TGCTTACCTTGTTGCCGAGA+AGG - chr5.2:80847314-80847333 MS.gene81288:CDS 50.0%
TGGGTCATTCACTGTGACCA+GGG - chr5.2:80847395-80847414 MS.gene81288:CDS 50.0%
TGTCGGTCAAGCCCTCAAAA+CGG + chr5.2:80846976-80846995 None:intergenic 50.0%
TTCATGGAAGCCATAGCTGC+TGG - chr5.2:80847246-80847265 MS.gene81288:CDS 50.0%
! AGCCCAACACTTTTGGCAAC+AGG - chr5.2:80848885-80848904 MS.gene81288:intron 50.0%
! CAAGGTGATCAAGGAGGTGT+TGG - chr5.2:80848562-80848581 MS.gene81288:intron 50.0%
! CATGAAGGCACAGGCTTTGA+GGG - chr5.2:80848685-80848704 MS.gene81288:intron 50.0%
! TCATGAAGGCACAGGCTTTG+AGG - chr5.2:80848684-80848703 MS.gene81288:intron 50.0%
! TGTCCGCCGTGTTTTCATCA+TGG - chr5.2:80847938-80847957 MS.gene81288:intron 50.0%
!! GAAGGGTATTGTGGACTCTG+AGG - chr5.2:80848001-80848020 MS.gene81288:CDS 50.0%
ACTGGTGAAGCTCTTGGCAG+GGG - chr5.2:80847423-80847442 MS.gene81288:CDS 55.0%
AGGTACCACTCCACCAAGAG+TGG - chr5.2:80848236-80848255 MS.gene81288:intron 55.0%
CAACCCCGAGAACCCCATAA+TGG - chr5.2:80848754-80848773 MS.gene81288:intron 55.0%
CAACTGGTGAAGCTCTTGGC+AGG - chr5.2:80847421-80847440 MS.gene81288:CDS 55.0%
CAGTGAATGACCCACCAGCT+TGG + chr5.2:80847389-80847408 None:intergenic 55.0%
CATCACCACTCTTGGTGGAG+TGG + chr5.2:80848244-80848263 None:intergenic 55.0%
CCCCCTTCCTTGAGAAGCTT+AGG - chr5.2:80848360-80848379 MS.gene81288:intron 55.0%
CCTCCATTATGGGGTTCTCG+GGG + chr5.2:80848760-80848779 None:intergenic 55.0%
GCATCAGCTTCCTCCAATGG+TGG + chr5.2:80848977-80848996 None:intergenic 55.0%
GGAAGAGGAGGGTAAGGTTG+AGG - chr5.2:80847617-80847636 MS.gene81288:CDS 55.0%
GGAAGCTGATGCTGATGCAG+AGG - chr5.2:80848985-80849004 MS.gene81288:CDS 55.0%
GTGGGTCATTCACTGTGACC+AGG - chr5.2:80847394-80847413 MS.gene81288:CDS 55.0%
GTTGGACTGCCAACATGGAG+AGG - chr5.2:80848660-80848679 MS.gene81288:intron 55.0%
TATGTGTGGGAGTCCCAAGC+TGG - chr5.2:80847372-80847391 MS.gene81288:CDS 55.0%
TCTTGAGGAACGCCGTCTGA+AGG - chr5.2:80847488-80847507 MS.gene81288:CDS 55.0%
TGCTGACATGCCACCATTGG+AGG - chr5.2:80848964-80848983 MS.gene81288:CDS 55.0%
TTGAGGGATAGCAGCATGGC+TGG - chr5.2:80848701-80848720 MS.gene81288:intron 55.0%
! ACCCCATAATGGAGGAGCTG+AGG - chr5.2:80848765-80848784 MS.gene81288:intron 55.0%
! GCTGAGGAAACGTGCTGATG+CGG - chr5.2:80848781-80848800 MS.gene81288:intron 55.0%
! GGAGAGGATCATGAAGGCAC+AGG - chr5.2:80848676-80848695 MS.gene81288:intron 55.0%
!! CAAGGAGGTGTTGGGTGACA+AGG - chr5.2:80848571-80848590 MS.gene81288:intron 55.0%
!! GGCTTTGAGGGATAGCAGCA+TGG - chr5.2:80848697-80848716 MS.gene81288:intron 55.0%
CCCCGAGAACCCCATAATGG+AGG - chr5.2:80848757-80848776 MS.gene81288:intron 60.0%
GGAACGCCGTCTGAAGGACT+TGG - chr5.2:80847494-80847513 MS.gene81288:CDS 60.0%
TGTGGGAGTCCCAAGCTGGT+GGG - chr5.2:80847376-80847395 MS.gene81288:CDS 60.0%
! GGAAACGTGCTGATGCGGAC+AGG - chr5.2:80848786-80848805 MS.gene81288:intron 60.0%
GTGTGGGAGTCCCAAGCTGG+TGG - chr5.2:80847375-80847394 MS.gene81288:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 80846032 80849033 80846032 ID=MS.gene81288
chr5.2 mRNA 80846032 80849033 80846032 ID=MS.gene81288.t1;Parent=MS.gene81288
chr5.2 exon 80848911 80849033 80848911 ID=MS.gene81288.t1.exon1;Parent=MS.gene81288.t1
chr5.2 CDS 80848911 80849033 80848911 ID=cds.MS.gene81288.t1;Parent=MS.gene81288.t1
chr5.2 exon 80847965 80848106 80847965 ID=MS.gene81288.t1.exon2;Parent=MS.gene81288.t1
chr5.2 CDS 80847965 80848106 80847965 ID=cds.MS.gene81288.t1;Parent=MS.gene81288.t1
chr5.2 exon 80846032 80847866 80846032 ID=MS.gene81288.t1.exon3;Parent=MS.gene81288.t1
chr5.2 CDS 80846032 80847866 80846032 ID=cds.MS.gene81288.t1;Parent=MS.gene81288.t1
Gene Sequence

>MS.gene81288

ATGGCGGAACAAGAGACGTTTGCTTTCCAGGCTGAGATCAATCAACTTCTCAGTCTCATCATCAACACCTTTTACAGTAACAAGGAGATTTTTCTTCGTGAACTCATCAGTAACGCTTCCGATGTAAGCTTCTTCCTCTTCGCTCTTTTTTTCTTTTTGTTTCTTAGGGTTCGATCTAGTTTAAGTTCTATTTTATTATGATTTTGATGAATTTTTTCGGTTATGATTCTTATTGGTATTATTTTATCAATTTTAGGGTTTATGTTAATTGAATATGTTGTTAGGGTTTTGGGATTATTGCGTTGTTTACGATCTTTGTGATTTTTGCGTTGTTGTTGTTTGAACACAGTGATGATTTGTTAGTCATGTTTAGGTTTCATTGATTTAAATTTGAATTTAAATTGTGATGAATGTTCTATGCAGTCAATTAACGTTATCTTGATTTTGAACCGAATATATGTTTCATAGTTGATTCATAGTAGAGTCATACTTGAAATACCCAAATTGAAATTGAATTTTAATTAGTTCGGTTTGTATTGGTATCAACCCTAATCATGTGATCTATTTTTTTTTTTTACTGTGTAACATTTTCACTTGGAAAGTTGTATTGATCCTTTAATTATATGAATGAAAGTTGTATGTGACAAATAATCGACGTTAGTCATAATAACTCTTTAATTTTTTGAATGGAAGTTGTATCAACCCTTTTAGTTTTAGAATTGAATTTGCATGGATCCTTTAATTTTTTGAAAGAAAGTTGTTTGGGACAAAAAGTCAATGTTATTGTCAATGTTATTTGAGGTATAATTGTTACTAATACTTTGGAATATCAGTGTTGGATTTTTGGAATGTTTGCTGTTAATGATGATTTAGTTGTTGTGGGTATAAATGTTGTTCTGATTATTATATTGGGATGCTGTAATGTAGGCTTTGGATAAGATCCGTTTTGAGGGCTTGACCGACAAGAGCAAGCTTGATTCTCAGCCAGAGTTGTTCATTCACATTATTCCTGACAAGACCAACAACACCTTGACTATCATTGATAGTGGAATTGGAATGACCAAAGCTGGTAAGTTAGCATGAACTCTGAAATTGGTTTATGTAGCAGTACTGTGTTGTTTGATAATTTATGTTGTTTACTAATATTTGTCTGTATTTATGTTCCAGATTTGGTGAACAACCTAGGTACCATTGCTAGGTCTGGTACCAAGGAATTCATGGAAGCCATAGCTGCTGGTGCTGATGTTAGCATGATTGGACAGTTTGGTGTTGGTTTCTACTCTGCTTACCTTGTTGCCGAGAAGGTTATTGTTACCACCAAGCACAATGATGATGAACAGTATGTGTGGGAGTCCCAAGCTGGTGGGTCATTCACTGTGACCAGGGATACAACTGGTGAAGCTCTTGGCAGGGGAACTAAAATAACTCTCATCCTCAAGGAGGATCAACTTGAGTATCTTGAGGAACGCCGTCTGAAGGACTTGGTTAAGAAGCATTCTGAATTTATTAGCTATCCAATTTCTCTTTGGGTTGAGAAGACTATTGAGAAAGAGATTTCTGATGATGAGGACGAGGAAGAGAAGAAGGAAGAGGAGGGTAAGGTTGAGGAAGTAGATGAGGAGAAAGAAAAGGAAGAGAAGAAAAAGAAGAAGATTAAGGAGGTGTCTAATGAATGGTCTTTGGTGAACAAGCAGAAGCCTATTTGGATGAGGAAGCCTGAGGAGATCACAAAGGACGAGTATGCTGCTTTTTACAAGAGTCTCACCAATGATTGGGAAGAGCATTTGGCTGTTAAGCACTTCTCTGTTGAGGGACAGTTGGAGTTTAAGGCTGTTCTCTTTGTACCGAAGAGAGCACCTTTTGATCTCTTTGACACAAAGAAGAAGCCCAACAACATCAAGCTGTATGTCCGCCGTGTTTTCATCATGGACAACTGTGAGGAGCTGATGCCCGAGTATCTTAGCTTTGTGAAGGGTATTGTGGACTCTGAGGATCTTCCACTTAACATTTCAAGAGAAATGCTTCAACAGAACAAGATTCTTAAGGTCATCAGGAAGAACTTGGTGAAGAAGTGCCTCGAGCTTTTCTTTGAAATTGCTGAGAACAAGGAAGACTACAACAAGTTCTATGAGGCCTTCTCTAAGAACTTGAAGCTGGGTATCCATGAGGATTCTCAAAACAAGACAAAGCTTGCTGATTTGCTCAGGTACCACTCCACCAAGAGTGGTGATGACATGACCAGCCTCAAGGACTATGTTACCAGGATGAAGGAAGGACAGAATGACATTTACTACATTACCGGTGAAAGCAAGAAAGCTGTTGAGAATTCCCCCTTCCTTGAGAAGCTTAGGAAGAAGGGATATGAAGTGATTTACATGGTTGACGCCATTGATGAATATGCTGTTGGTCAGCTCAAGGAATTTGAGGGTAAGAAGCTAGTGTCTGCAACTAAAGAAGGGTTGAAACTTGACGAGAGTGAGGATGAAAAGAAAAAGATGGAAGAACAGAAGGAGAAGTTCGACAATCTTTGCAAGGTGATCAAGGAGGTGTTGGGTGACAAGGTTGAGAAAGTGGTTGTATCTGACCGTGTTGTCGATTCTCCTTGCTGTTTAGTGACTGGTGAGTATGGTTGGACTGCCAACATGGAGAGGATCATGAAGGCACAGGCTTTGAGGGATAGCAGCATGGCTGGTTACATGTCAAGCAAGAAGACAATGGAAATCAACCCCGAGAACCCCATAATGGAGGAGCTGAGGAAACGTGCTGATGCGGACAGGAATGACAAATCTGTCAAGGACCTTGTTCTCTTGCTGTTTGAGACTGCTCTTCTTACTTCTGGATTCAGCCTTGATGAGCCCAACACTTTTGGCAACAGGATTCACAGGATGCTCAAGCTTGGTCTTAGCATTGATGAGGATGCAGCAGAAGCTGATGCTGACATGCCACCATTGGAGGAAGCTGATGCTGATGCAGAGGGAAGCAAGATGGAAGAGGTCGATTAA
Protein sequence

>MS.gene81288.t1

MAEQETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFEGLTDKSKLDSQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEAIAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTVTRDTTGEALGRGTKITLILKEDQLEYLEERRLKDLVKKHSEFISYPISLWVEKTIEKEISDDEDEEEKKEEEGKVEEVDEEKEKEEKKKKKIKEVSNEWSLVNKQKPIWMRKPEEITKDEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKPNNIKLYVRRVFIMDNCEELMPEYLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFFEIAENKEDYNKFYEAFSKNLKLGIHEDSQNKTKLADLLRYHSTKSGDDMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLRKKGYEVIYMVDAIDEYAVGQLKEFEGKKLVSATKEGLKLDESEDEKKKMEEQKEKFDNLCKVIKEVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENPIMEELRKRADADRNDKSVKDLVLLLFETALLTSGFSLDEPNTFGNRIHRMLKLGLSIDEDAAEADADMPPLEEADADAEGSKMEEVD