Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38261.t1 | XP_004491530.1 | 97.6 | 699 | 17 | 0 | 1 | 699 | 1 | 699 | 0.00E+00 | 1244.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38261.t1 | P36181 | 93.0 | 699 | 49 | 0 | 1 | 699 | 1 | 699 | 0.0e+00 | 1198.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38261.t1 | A0A1S2XPL0 | 97.6 | 699 | 17 | 0 | 1 | 699 | 1 | 699 | 0.0e+00 | 1244.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene38261 | 0.827514 | 1.50E-54 | -1.69E-46 |
| MS.gene049166 | MS.gene38261 | 0.854883 | 9.15E-62 | -1.69E-46 |
| MS.gene04917 | MS.gene38261 | 0.827381 | 1.61E-54 | -1.69E-46 |
| MS.gene049208 | MS.gene38261 | 0.809791 | 1.59E-50 | -1.69E-46 |
| MS.gene049685 | MS.gene38261 | 0.800968 | 1.12E-48 | -1.69E-46 |
| MS.gene049786 | MS.gene38261 | 0.807185 | 5.72E-50 | -1.69E-46 |
| MS.gene049887 | MS.gene38261 | 0.807566 | 4.75E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene38261 | 0.822642 | 2.12E-53 | -1.69E-46 |
| MS.gene050317 | MS.gene38261 | 0.84712 | 1.41E-59 | -1.69E-46 |
| MS.gene050629 | MS.gene38261 | -0.813651 | 2.30E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene38261 | 0.824184 | 9.26E-54 | -1.69E-46 |
| MS.gene050838 | MS.gene38261 | 0.838577 | 2.65E-57 | -1.69E-46 |
| MS.gene051003 | MS.gene38261 | 0.820754 | 5.80E-53 | -1.69E-46 |
| MS.gene051234 | MS.gene38261 | 0.800458 | 1.43E-48 | -1.69E-46 |
| MS.gene052342 | MS.gene38261 | 0.813896 | 2.03E-51 | -1.69E-46 |
| MS.gene052434 | MS.gene38261 | 0.872343 | 3.42E-67 | -1.69E-46 |
| MS.gene053058 | MS.gene38261 | 0.841058 | 5.98E-58 | -1.69E-46 |
| MS.gene053109 | MS.gene38261 | 0.81593 | 7.18E-52 | -1.69E-46 |
| MS.gene053381 | MS.gene38261 | 0.846541 | 2.04E-59 | -1.69E-46 |
| MS.gene054823 | MS.gene38261 | 0.80054 | 1.37E-48 | -1.69E-46 |
| MS.gene055311 | MS.gene38261 | 0.86418 | 1.46E-64 | -1.69E-46 |
| MS.gene055313 | MS.gene38261 | 0.828823 | 7.26E-55 | -1.69E-46 |
| MS.gene055314 | MS.gene38261 | 0.836733 | 7.87E-57 | -1.69E-46 |
| MS.gene056097 | MS.gene38261 | 0.819604 | 1.06E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene38261 | 0.85456 | 1.13E-61 | -1.69E-46 |
| MS.gene056432 | MS.gene38261 | 0.819818 | 9.51E-53 | -1.69E-46 |
| MS.gene056752 | MS.gene38261 | 0.830755 | 2.46E-55 | -1.69E-46 |
| MS.gene056787 | MS.gene38261 | 0.82818 | 1.04E-54 | -1.69E-46 |
| MS.gene056849 | MS.gene38261 | 0.827301 | 1.69E-54 | -1.69E-46 |
| MS.gene057721 | MS.gene38261 | 0.837952 | 3.84E-57 | -1.69E-46 |
| MS.gene05781 | MS.gene38261 | 0.812894 | 3.37E-51 | -1.69E-46 |
| MS.gene058278 | MS.gene38261 | 0.813055 | 3.11E-51 | -1.69E-46 |
| MS.gene058438 | MS.gene38261 | 0.802832 | 4.65E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene38261 | 0.81077 | 9.77E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene38261 | 0.826481 | 2.65E-54 | -1.69E-46 |
| MS.gene058646 | MS.gene38261 | 0.821412 | 4.09E-53 | -1.69E-46 |
| MS.gene058654 | MS.gene38261 | 0.839688 | 1.36E-57 | -1.69E-46 |
| MS.gene058758 | MS.gene38261 | 0.843695 | 1.20E-58 | -1.69E-46 |
| MS.gene059170 | MS.gene38261 | 0.805117 | 1.56E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene38261 | 0.803566 | 3.28E-49 | -1.69E-46 |
| MS.gene059290 | MS.gene38261 | 0.844751 | 6.23E-59 | -1.69E-46 |
| MS.gene06010 | MS.gene38261 | 0.829228 | 5.79E-55 | -1.69E-46 |
| MS.gene06011 | MS.gene38261 | 0.832556 | 8.83E-56 | -1.69E-46 |
| MS.gene060296 | MS.gene38261 | 0.808183 | 3.51E-50 | -1.69E-46 |
| MS.gene060563 | MS.gene38261 | 0.827847 | 1.25E-54 | -1.69E-46 |
| MS.gene060702 | MS.gene38261 | 0.806369 | 8.51E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene38261 | 0.802616 | 5.15E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene38261 | 0.879809 | 9.20E-70 | -1.69E-46 |
| MS.gene060870 | MS.gene38261 | 0.866322 | 3.10E-65 | -1.69E-46 |
| MS.gene061006 | MS.gene38261 | 0.805468 | 1.32E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38261 | MS.gene061126 | PPI |
| MS.gene020834 | MS.gene38261 | PPI |
| MS.gene38261 | MS.gene006231 | PPI |
| MS.gene38261 | MS.gene75388 | PPI |
| MS.gene24136 | MS.gene38261 | PPI |
| MS.gene37988 | MS.gene38261 | PPI |
| MS.gene38261 | MS.gene62123 | PPI |
| MS.gene38261 | MS.gene64023 | PPI |
| MS.gene37989 | MS.gene38261 | PPI |
| MS.gene64024 | MS.gene38261 | PPI |
| MS.gene020833 | MS.gene38261 | PPI |
| MS.gene029690 | MS.gene38261 | PPI |
| MS.gene38261 | MS.gene49154 | PPI |
| MS.gene38210 | MS.gene38261 | PPI |
| MS.gene38261 | MS.gene30654 | PPI |
| MS.gene38261 | MS.gene040499 | PPI |
| MS.gene38261 | MS.gene27084 | PPI |
| MS.gene81288 | MS.gene38261 | PPI |
| MS.gene38261 | MS.gene38049 | PPI |
| MS.gene38261 | MS.gene64225 | PPI |
| MS.gene81285 | MS.gene38261 | PPI |
| MS.gene38261 | MS.gene020886 | PPI |
| MS.gene58998 | MS.gene38261 | PPI |
| MS.gene38262 | MS.gene38261 | PPI |
| MS.gene38261 | MS.gene75389 | PPI |
| MS.gene81227 | MS.gene38261 | PPI |
| MS.gene38261 | MS.gene60613 | PPI |
| MS.gene38261 | MS.gene62607 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38261.t1 | MTR_5g096430 | 99.857 | 699 | 1 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1419 |
| MS.gene38261.t1 | MTR_5g096460 | 99.857 | 699 | 1 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1419 |
| MS.gene38261.t1 | MTR_6g452990 | 88.160 | 701 | 79 | 3 | 1 | 699 | 1 | 699 | 0.0 | 1186 |
| MS.gene38261.t1 | MTR_1g099840 | 84.692 | 699 | 92 | 2 | 1 | 699 | 6 | 689 | 0.0 | 1146 |
| MS.gene38261.t1 | MTR_1g025430 | 48.867 | 706 | 320 | 8 | 5 | 673 | 78 | 779 | 0.0 | 642 |
| MS.gene38261.t1 | MTR_5g097320 | 45.562 | 676 | 345 | 10 | 5 | 667 | 90 | 755 | 0.0 | 577 |
| MS.gene38261.t1 | MTR_0009s0390 | 45.634 | 710 | 354 | 13 | 5 | 698 | 82 | 775 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38261.t1 | AT5G56000 | 90.714 | 700 | 63 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1205 |
| MS.gene38261.t1 | AT5G56030 | 92.286 | 700 | 52 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1196 |
| MS.gene38261.t1 | AT5G56010 | 92.000 | 700 | 54 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1194 |
| MS.gene38261.t1 | AT5G56030 | 88.615 | 729 | 52 | 3 | 1 | 699 | 1 | 728 | 0.0 | 1181 |
| MS.gene38261.t1 | AT5G52640 | 85.185 | 702 | 99 | 5 | 1 | 699 | 1 | 700 | 0.0 | 1148 |
| MS.gene38261.t1 | AT4G24190 | 50.356 | 703 | 310 | 8 | 5 | 672 | 77 | 775 | 0.0 | 643 |
| MS.gene38261.t1 | AT4G24190 | 50.356 | 703 | 310 | 8 | 5 | 672 | 77 | 775 | 0.0 | 642 |
| MS.gene38261.t1 | AT2G04030 | 47.485 | 676 | 329 | 11 | 5 | 668 | 77 | 738 | 0.0 | 597 |
| MS.gene38261.t1 | AT3G07770 | 45.495 | 677 | 346 | 10 | 5 | 668 | 95 | 761 | 0.0 | 590 |
| MS.gene38261.t1 | AT3G07770 | 45.495 | 677 | 346 | 10 | 5 | 668 | 95 | 761 | 0.0 | 590 |
| MS.gene38261.t1 | AT3G07770 | 45.495 | 677 | 346 | 10 | 5 | 668 | 95 | 761 | 0.0 | 590 |
| MS.gene38261.t1 | AT2G04030 | 47.033 | 674 | 332 | 11 | 5 | 668 | 77 | 735 | 0.0 | 588 |
Find 174 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGGTCAGTTGGAGTTTA+AGG | 0.170053 | 5.3:-77918637 | MS.gene38261:CDS |
| GAGACTGCTCTTCTTACTTC+TGG | 0.243959 | 5.3:-77917628 | MS.gene38261:CDS |
| TTCTCAACCCAAAGAGAAAT+TGG | 0.256773 | 5.3:+77918930 | None:intergenic |
| TGAACAAGCAGAAGCCTATT+TGG | 0.260701 | 5.3:-77918761 | MS.gene38261:CDS |
| TTAGCTATCCAATTTCTCTT+TGG | 0.269210 | 5.3:-77918938 | MS.gene38261:CDS |
| CTTGATGAGCCCAACACTTT+TGG | 0.271765 | 5.3:-77917598 | MS.gene38261:CDS |
| TAGCTATCCAATTTCTCTTT+GGG | 0.282969 | 5.3:-77918937 | MS.gene38261:CDS |
| ACAAGAGACGTTCGCTTTCC+AGG | 0.298645 | 5.3:-77920399 | MS.gene38261:CDS |
| ACTCAAGTTGATCCTCCTTT+AGG | 0.313372 | 5.3:+77919012 | None:intergenic |
| TCCTCCATGATGGGATTCTC+AGG | 0.339757 | 5.3:+77917718 | None:intergenic |
| CAATGATTGGGAAGAGCATT+TGG | 0.340719 | 5.3:-77918679 | MS.gene38261:CDS |
| TGTTTAGTGACTGGTGAGTA+TGG | 0.358330 | 5.3:-77917838 | MS.gene38261:CDS |
| GACATACAGCTTGATGTTGT+TGG | 0.373069 | 5.3:+77918557 | None:intergenic |
| AAACGTTAGCTTACCAGCTT+TGG | 0.375649 | 5.3:+77919390 | None:intergenic |
| GTCTGGTACCAAGGAATTCA+TGG | 0.376590 | 5.3:-77919246 | MS.gene38261:CDS |
| AATGACATTTACTACATTAC+CGG | 0.381181 | 5.3:-77918165 | MS.gene38261:CDS |
| AGTTCTTCCTGATGACCTTA+AGG | 0.384170 | 5.3:+77918406 | None:intergenic |
| ACAAGAGTCTCACCAATGAT+TGG | 0.384273 | 5.3:-77918692 | MS.gene38261:CDS |
| TGAGTATCTTAGCTTTGTTA+AGG | 0.384871 | 5.3:-77918493 | MS.gene38261:CDS |
| TCTGGCTTCCTCATCCAAAT+AGG | 0.390372 | 5.3:+77918747 | None:intergenic |
| ACATACAGCTTGATGTTGTT+GGG | 0.394439 | 5.3:+77918558 | None:intergenic |
| GAGATCAAAAGGTGCTCTCT+TGG | 0.403770 | 5.3:+77918599 | None:intergenic |
| AAAGTGTTGTTGGTCTTGTC+AGG | 0.406501 | 5.3:+77919442 | None:intergenic |
| AATGATAGTCAAAGTGTTGT+TGG | 0.411318 | 5.3:+77919432 | None:intergenic |
| TCATCCTTTGTAATCTCCTC+TGG | 0.414109 | 5.3:+77918729 | None:intergenic |
| GAAGAAGGAAGAGGAGGGTA+AGG | 0.417477 | 5.3:-77918865 | MS.gene38261:CDS |
| ACTATCATTGATAGTGGCAT+TGG | 0.423433 | 5.3:-77919418 | MS.gene38261:CDS |
| GTGAGTATGATTGGACAGTT+TGG | 0.425748 | 5.3:-77919200 | MS.gene38261:CDS |
| CGAGGAAGAGAAGAAGGAAG+AGG | 0.429375 | 5.3:-77918874 | MS.gene38261:CDS |
| GGTCATGTCATCACCACTCT+TGG | 0.434025 | 5.3:+77918227 | None:intergenic |
| GGAAGAGGAGGGTAAGGTTG+AGG | 0.435286 | 5.3:-77918859 | MS.gene38261:CDS |
| CTTCTCTGTTGAGGGTCAGT+TGG | 0.437261 | 5.3:-77918646 | MS.gene38261:CDS |
| ACAAGATCCTTAAGGTCATC+AGG | 0.437555 | 5.3:-77918413 | MS.gene38261:CDS |
| GAGTATCTTAGCTTTGTTAA+GGG | 0.438963 | 5.3:-77918492 | MS.gene38261:CDS |
| CATGAAGGCACAAGCTTTGA+GGG | 0.445178 | 5.3:-77917791 | MS.gene38261:CDS |
| TTTGTGTCAAAGAGATCAAA+AGG | 0.446679 | 5.3:+77918588 | None:intergenic |
| GTTAAGCACTTCTCTGTTGA+GGG | 0.447502 | 5.3:-77918654 | MS.gene38261:CDS |
| CTAGTGTCTGCAACTAAAGA+AGG | 0.450314 | 5.3:-77918009 | MS.gene38261:CDS |
| ACTTTGACTATCATTGATAG+TGG | 0.450944 | 5.3:-77919424 | MS.gene38261:CDS |
| CCTTGAGAAGCTTAGGAAGA+AGG | 0.459680 | 5.3:-77918109 | MS.gene38261:CDS |
| CAAGAGTCTCACCAATGATT+GGG | 0.462392 | 5.3:-77918691 | MS.gene38261:CDS |
| CAAATGCTCTTCCCAATCAT+TGG | 0.463958 | 5.3:+77918680 | None:intergenic |
| TATAGCTTCCATGAATTCCT+TGG | 0.467031 | 5.3:+77919238 | None:intergenic |
| TGGTCAGCTCAAGGAATTTG+AGG | 0.468755 | 5.3:-77918040 | MS.gene38261:CDS |
| TGCTTACCTTGTTGCTGAGA+AGG | 0.468853 | 5.3:-77919162 | MS.gene38261:CDS |
| AGTAAATGACCCACCAGCTT+GGG | 0.469169 | 5.3:+77919091 | None:intergenic |
| TGTTAAGCACTTCTCTGTTG+AGG | 0.472630 | 5.3:-77918655 | MS.gene38261:CDS |
| TTCCTCAGCTCCTCCATGAT+GGG | 0.474148 | 5.3:+77917709 | None:intergenic |
| AGTAGACGAGGAGAAAGAAA+AGG | 0.477035 | 5.3:-77918835 | MS.gene38261:CDS |
| TTTCTCTAAGAACTTGAAGC+TGG | 0.477075 | 5.3:-77918310 | MS.gene38261:CDS |
| GGTGCTGATGTGAGTATGAT+TGG | 0.477447 | 5.3:-77919209 | MS.gene38261:CDS |
| TTGAGGGATAGCAGCATGGC+TGG | 0.477457 | 5.3:-77917775 | MS.gene38261:CDS |
| TCATGAAGGCACAAGCTTTG+AGG | 0.479345 | 5.3:-77917792 | MS.gene38261:CDS |
| AGATCAAAAGGTGCTCTCTT+GGG | 0.479988 | 5.3:+77918600 | None:intergenic |
| AGAATCAAGCTTGCTCTTGT+CGG | 0.482487 | 5.3:+77919492 | None:intergenic |
| TAGCTTTGTTAAGGGTATTG+TGG | 0.484688 | 5.3:-77918484 | MS.gene38261:CDS |
| CTTTGAAATTGCTGAGAACA+AGG | 0.486596 | 5.3:-77918358 | MS.gene38261:CDS |
| GGAAGAGAAGAAGGAAGAGG+AGG | 0.487208 | 5.3:-77918871 | MS.gene38261:CDS |
| CATGTCATCACCACTCTTGG+TGG | 0.488480 | 5.3:+77918230 | None:intergenic |
| ATTCTGTCCTTCCTTCATCC+TGG | 0.488551 | 5.3:+77918185 | None:intergenic |
| CAAAGCTTGCTGATTTGCTC+AGG | 0.489387 | 5.3:-77918260 | MS.gene38261:CDS |
| TCAACAGAACAAGATCCTTA+AGG | 0.489546 | 5.3:-77918421 | MS.gene38261:CDS |
| GGTGTCTAATGAATGGTCTT+TGG | 0.492991 | 5.3:-77918784 | MS.gene38261:CDS |
| ATGATTGGACAGTTTGGTGT+TGG | 0.493545 | 5.3:-77919194 | MS.gene38261:CDS |
| GGAACGCCGTCTGAAGGACT+TGG | 0.493605 | 5.3:-77918982 | MS.gene38261:CDS |
| AACAGCTTTCTTGCTTTCAC+CGG | 0.494202 | 5.3:+77918146 | None:intergenic |
| TAAAATAACTCTCATCCTAA+AGG | 0.494415 | 5.3:-77919027 | MS.gene38261:CDS |
| CTTCCTAAGCTTCTCAAGGA+AGG | 0.495109 | 5.3:+77918113 | None:intergenic |
| CAATCTTTGCAAGGTGATCA+AGG | 0.496155 | 5.3:-77917923 | MS.gene38261:CDS |
| GGCATTGGAATGACCAAAGC+TGG | 0.498686 | 5.3:-77919403 | MS.gene38261:intron |
| GGGTGACAAGGTTGAGAAAG+TGG | 0.499707 | 5.3:-77917893 | MS.gene38261:CDS |
| ATCTCTCTTGAAATGTTAAG+TGG | 0.500434 | 5.3:+77918447 | None:intergenic |
| TTCGTCATCATTGTGCTTGG+TGG | 0.500444 | 5.3:+77919130 | None:intergenic |
| CTAGGTACCATTGCTAGGTC+TGG | 0.502477 | 5.3:-77919263 | MS.gene38261:CDS |
| GAAGAGAAGAAGGAAGAGGA+GGG | 0.502813 | 5.3:-77918870 | MS.gene38261:CDS |
| GTGGGTCATTTACTGTGACC+AGG | 0.504199 | 5.3:-77919082 | MS.gene38261:CDS |
| GATACTACTGGTGAAGCTCT+TGG | 0.506627 | 5.3:-77919059 | MS.gene38261:CDS |
| TCTCCTTGCTGTTTAGTGAC+TGG | 0.506819 | 5.3:-77917847 | MS.gene38261:CDS |
| TTTCCTCAGCTCCTCCATGA+TGG | 0.507054 | 5.3:+77917708 | None:intergenic |
| CTTGAGAAGCTTAGGAAGAA+GGG | 0.508184 | 5.3:-77918108 | MS.gene38261:CDS |
| CAAGGTGATCAAGGAGGTGT+TGG | 0.509412 | 5.3:-77917914 | MS.gene38261:CDS |
| TTCCTAAGCTTCTCAAGGAA+GGG | 0.510661 | 5.3:+77918114 | None:intergenic |
| TCCTAAGCTTCTCAAGGAAG+GGG | 0.515007 | 5.3:+77918115 | None:intergenic |
| AGCTTCACCAGTAGTATCCC+TGG | 0.516220 | 5.3:+77919064 | None:intergenic |
| CTTCATGATCCTCTCCATGT+TGG | 0.521693 | 5.3:+77917807 | None:intergenic |
| TGAGGACGAGGAAGAGAAGA+AGG | 0.523115 | 5.3:-77918880 | MS.gene38261:CDS |
| TGCTGACATGCCACCATTGG+AGG | 0.530142 | 5.3:-77917512 | MS.gene38261:CDS |
| ATCCTGTTGCCAAAAGTGTT+GGG | 0.532827 | 5.3:+77917589 | None:intergenic |
| ATTCACAGGATGCTCAAGCT+TGG | 0.534491 | 5.3:-77917568 | MS.gene38261:CDS |
| TCAGCATCAGCTTCCTCCAA+TGG | 0.535356 | 5.3:+77917499 | None:intergenic |
| CATTGCTAGGTCTGGTACCA+AGG | 0.535688 | 5.3:-77919255 | MS.gene38261:CDS |
| TTAAGGAGGTGTCTAATGAA+TGG | 0.538054 | 5.3:-77918791 | MS.gene38261:CDS |
| TACTGGTGAAGCTCTTGGTA+GGG | 0.540570 | 5.3:-77919054 | MS.gene38261:CDS |
| TTCATGGAAGCTATAGCTGC+TGG | 0.543301 | 5.3:-77919230 | MS.gene38261:CDS |
| AATCCTGTTGCCAAAAGTGT+TGG | 0.544511 | 5.3:+77917588 | None:intergenic |
| TGATGCTGACATGCCACCAT+TGG | 0.545200 | 5.3:-77917515 | MS.gene38261:CDS |
| TTCTCTAAGAACTTGAAGCT+GGG | 0.547307 | 5.3:-77918309 | MS.gene38261:CDS |
| GGTCAGCTCAAGGAATTTGA+GGG | 0.548038 | 5.3:-77918039 | MS.gene38261:CDS |
| GTGTGGGAGTCCCAAGCTGG+TGG | 0.550695 | 5.3:-77919101 | MS.gene38261:CDS |
| CTGTTCGTCATCATTGTGCT+TGG | 0.552015 | 5.3:+77919127 | None:intergenic |
| TTAACAAAGCTAAGATACTC+AGG | 0.554583 | 5.3:+77918495 | None:intergenic |
| ATAATGTGAATGAACAGCTC+TGG | 0.554976 | 5.3:+77919466 | None:intergenic |
| TAAGGTCATCAGGAAGAACT+TGG | 0.555403 | 5.3:-77918403 | MS.gene38261:CDS |
| CCTTCTTCCTAAGCTTCTCA+AGG | 0.555668 | 5.3:+77918109 | None:intergenic |
| CAGTAAATGACCCACCAGCT+TGG | 0.561388 | 5.3:+77919090 | None:intergenic |
| CTACTGGTGAAGCTCTTGGT+AGG | 0.561530 | 5.3:-77919055 | MS.gene38261:CDS |
| GGAAACGTGCTGATGCTGAC+AGG | 0.562915 | 5.3:-77917690 | MS.gene38261:CDS |
| TAGTGACTGGTGAGTATGGT+TGG | 0.563826 | 5.3:-77917834 | MS.gene38261:CDS |
| GGACTATGTTACCAGGATGA+AGG | 0.567325 | 5.3:-77918196 | MS.gene38261:CDS |
| GATTTCTGACGATGAGGACG+AGG | 0.568643 | 5.3:-77918892 | MS.gene38261:CDS |
| TCTTGAGGAACGCCGTCTGA+AGG | 0.568654 | 5.3:-77918988 | MS.gene38261:CDS |
| CAAAAGTGTTGGGCTCATCA+AGG | 0.569013 | 5.3:+77917599 | None:intergenic |
| AGAGGGAAGCAAGATGGAAG+AGG | 0.571151 | 5.3:-77917473 | MS.gene38261:CDS |
| CAAGGAGGTGTTGGGTGACA+AGG | 0.575150 | 5.3:-77917905 | MS.gene38261:CDS |
| GGTAACATAGTCCTTGAGGC+TGG | 0.577318 | 5.3:+77918206 | None:intergenic |
| GGGATATGAAGTGATTTACA+TGG | 0.578493 | 5.3:-77918088 | MS.gene38261:CDS |
| CCTCCATGATGGGATTCTCA+GGG | 0.578771 | 5.3:+77917719 | None:intergenic |
| AGCAAGGAGAATCGACAACT+CGG | 0.578868 | 5.3:+77917860 | None:intergenic |
| ACAACCTAGGTACCATTGCT+AGG | 0.579010 | 5.3:-77919268 | MS.gene38261:CDS |
| TGTCGGTCAAGCCCTCAAAA+CGG | 0.582332 | 5.3:+77919509 | None:intergenic |
| GCAGATTTGGTGAACAACCT+AGG | 0.583680 | 5.3:-77919281 | MS.gene38261:intron |
| AGCAGAAGCCTATTTGGATG+AGG | 0.584932 | 5.3:-77918755 | MS.gene38261:CDS |
| ACTGGTGAAGCTCTTGGTAG+GGG | 0.586981 | 5.3:-77919053 | MS.gene38261:CDS |
| GAAGTTGATTGATCTCAGCC+TGG | 0.587212 | 5.3:+77920381 | None:intergenic |
| CAGACCTAGCAATGGTACCT+AGG | 0.590700 | 5.3:+77919264 | None:intergenic |
| CATCACCACTCTTGGTGGAG+TGG | 0.592725 | 5.3:+77918235 | None:intergenic |
| TAAGGTTGAGGAAGTAGACG+AGG | 0.592744 | 5.3:-77918847 | MS.gene38261:CDS |
| TGGGTCATTTACTGTGACCA+GGG | 0.596558 | 5.3:-77919081 | MS.gene38261:CDS |
| CAACCCTGAGAATCCCATCA+TGG | 0.597286 | 5.3:-77917722 | MS.gene38261:CDS |
| ATCCCATCATGGAGGAGCTG+AGG | 0.597622 | 5.3:-77917711 | MS.gene38261:CDS |
| GTATGCTGTTGGTCAGCTCA+AGG | 0.599835 | 5.3:-77918049 | MS.gene38261:CDS |
| GAAGTTCGACAATCTTTGCA+AGG | 0.601872 | 5.3:-77917932 | MS.gene38261:CDS |
| GAAGCTGATGCTGATGCAGA+GGG | 0.602230 | 5.3:-77917490 | MS.gene38261:CDS |
| TGATGCAGAGGGAAGCAAGA+TGG | 0.604134 | 5.3:-77917479 | MS.gene38261:CDS |
| CAGGAATGACAAATCTGTGA+AGG | 0.605359 | 5.3:-77917671 | MS.gene38261:CDS |
| TCCTGGTAACATAGTCCTTG+AGG | 0.608835 | 5.3:+77918202 | None:intergenic |
| TAGTGTCTGCAACTAAAGAA+GGG | 0.609080 | 5.3:-77918008 | MS.gene38261:CDS |
| GCCTCAAGGACTATGTTACC+AGG | 0.610223 | 5.3:-77918203 | MS.gene38261:CDS |
| CATGTCAAGCAAGAAGACAA+TGG | 0.611061 | 5.3:-77917749 | MS.gene38261:CDS |
| CAATAACCTTCTCAGCAACA+AGG | 0.612540 | 5.3:+77919156 | None:intergenic |
| TATGTGTGGGAGTCCCAAGC+TGG | 0.615041 | 5.3:-77919104 | MS.gene38261:CDS |
| AGCTTTGAGGGATAGCAGCA+TGG | 0.615872 | 5.3:-77917779 | MS.gene38261:CDS |
| AATAACTCTCATCCTAAAGG+AGG | 0.618093 | 5.3:-77919024 | MS.gene38261:CDS |
| GCTTGGTCTTAGCATTGATG+AGG | 0.619021 | 5.3:-77917551 | MS.gene38261:CDS |
| CAACATGGAGAGGATCATGA+AGG | 0.620851 | 5.3:-77917806 | MS.gene38261:CDS |
| GTTGAAACTTGACGAGAGTG+AGG | 0.621123 | 5.3:-77917986 | MS.gene38261:CDS |
| ACTGTGACCAGGGATACTAC+TGG | 0.626949 | 5.3:-77919071 | MS.gene38261:CDS |
| GGATCAACTTGAGTATCTTG+AGG | 0.629396 | 5.3:-77919003 | MS.gene38261:CDS |
| TAAGGGTATTGTGGACTCTG+AGG | 0.633755 | 5.3:-77918475 | MS.gene38261:CDS |
| AGGTACCACTCCACCAAGAG+TGG | 0.636721 | 5.3:-77918240 | MS.gene38261:CDS |
| GCAATTGATGAGTATGCTGT+TGG | 0.641021 | 5.3:-77918060 | MS.gene38261:CDS |
| GTATGGTTGGACTGCCAACA+TGG | 0.641083 | 5.3:-77917821 | MS.gene38261:CDS |
| GAAAGAGATTTCTGACGATG+AGG | 0.644456 | 5.3:-77918898 | MS.gene38261:CDS |
| TCTTAACCAAGTCCTTCAGA+CGG | 0.644789 | 5.3:+77918976 | None:intergenic |
| TGTGGGAGTCCCAAGCTGGT+GGG | 0.646830 | 5.3:-77919100 | MS.gene38261:CDS |
| GCATCAGCTTCCTCCAATGG+TGG | 0.651686 | 5.3:+77917502 | None:intergenic |
| AAGGTGATCAAGGAGGTGTT+GGG | 0.654251 | 5.3:-77917913 | MS.gene38261:CDS |
| TGATGACATGACCAGCCTCA+AGG | 0.657377 | 5.3:-77918217 | MS.gene38261:CDS |
| CCTAAGCTTCTCAAGGAAGG+GGG | 0.664638 | 5.3:+77918116 | None:intergenic |
| GTTGGACTGCCAACATGGAG+AGG | 0.668192 | 5.3:-77917816 | MS.gene38261:CDS |
| TATGTTACCAGGATGAAGGA+AGG | 0.670222 | 5.3:-77918192 | MS.gene38261:CDS |
| GGAAGCTGATGCTGATGCAG+AGG | 0.671926 | 5.3:-77917491 | MS.gene38261:CDS |
| AGTTGTCCATGATGAAAACA+CGG | 0.681053 | 5.3:+77918532 | None:intergenic |
| TCACCAGTCACTAAACAGCA+AGG | 0.682332 | 5.3:+77917844 | None:intergenic |
| GAAGCCAGAGGAGATTACAA+AGG | 0.683556 | 5.3:-77918733 | MS.gene38261:CDS |
| CTTGAAGCTGGGTATCCATG+AGG | 0.697436 | 5.3:-77918298 | MS.gene38261:CDS |
| ATGATGACGAACAGTATGTG+TGG | 0.698166 | 5.3:-77919118 | MS.gene38261:CDS |
| CTTGGTACCAGACCTAGCAA+TGG | 0.700707 | 5.3:+77919256 | None:intergenic |
| TTTCATCATGGACAACTGTG+AGG | 0.702798 | 5.3:-77918526 | MS.gene38261:CDS |
| CCCTGAGAATCCCATCATGG+AGG | 0.716906 | 5.3:-77917719 | MS.gene38261:CDS |
| TATTTGGATGAGGAAGCCAG+AGG | 0.740409 | 5.3:-77918745 | MS.gene38261:CDS |
| TGATGACGAACAGTATGTGT+GGG | 0.740423 | 5.3:-77919117 | MS.gene38261:CDS |
| TCTTTGCAAGGTGATCAAGG+AGG | 0.803604 | 5.3:-77917920 | MS.gene38261:CDS |
| TGTCCATGATGAAAACACGG+CGG | 0.827708 | 5.3:+77918535 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATTCAATTTCAATTT+AGG | + | chr5.3:77917969-77917988 | None:intergenic | 10.0% |
| !! | ACTTTCATTCATATAATTAA+AGG | + | chr5.3:77918127-77918146 | None:intergenic | 15.0% |
| !! | ATGAATGATATTGATATAAT+CGG | - | chr5.3:77918069-77918088 | MS.gene38261:CDS | 15.0% |
| !! | TAATTGATTATATACTCTTA+GGG | - | chr5.3:77917728-77917747 | MS.gene38261:CDS | 15.0% |
| !! | TTAATTGATTATATACTCTT+AGG | - | chr5.3:77917727-77917746 | MS.gene38261:CDS | 15.0% |
| !!! | AAATTGAATTTTAATTAGTC+CGG | - | chr5.3:77917975-77917994 | MS.gene38261:CDS | 15.0% |
| !!! | GGATTATTTTTTCAATTTTA+GGG | - | chr5.3:77917698-77917717 | MS.gene38261:CDS | 15.0% |
| !!! | TCTAATACTTTGAAATATTA+GGG | - | chr5.3:77918234-77918253 | MS.gene38261:CDS | 15.0% |
| !!! | TGGATTATTTTTTCAATTTT+AGG | - | chr5.3:77917697-77917716 | MS.gene38261:CDS | 15.0% |
| !! | AAAAAATTGATCACGTAATA+AGG | + | chr5.3:77918018-77918037 | None:intergenic | 20.0% |
| !!! | ATGATTTTTTAGTCATGTTT+AGG | - | chr5.3:77917818-77917837 | MS.gene38261:CDS | 20.0% |
| !!! | GTCTAATACTTTGAAATATT+AGG | - | chr5.3:77918233-77918252 | MS.gene38261:CDS | 20.0% |
| !!! | TCTTTTGTTATCGTTTTTAT+TGG | - | chr5.3:77917677-77917696 | MS.gene38261:CDS | 20.0% |
| ! | AATGACATTTACTACATTAC+CGG | - | chr5.3:77919707-77919726 | MS.gene38261:intron | 25.0% |
| ! | ACATGACTAAAAAATCATCA+CGG | + | chr5.3:77917816-77917835 | None:intergenic | 25.0% |
| ! | GAAGAAAAAGAAGAAGATTA+AGG | - | chr5.3:77919064-77919083 | MS.gene38261:CDS | 25.0% |
| ! | TAAAATAACTCTCATCCTAA+AGG | - | chr5.3:77918845-77918864 | MS.gene38261:CDS | 25.0% |
| ! | TTGTGATGAAATGTTCTATA+CGG | - | chr5.3:77917868-77917887 | MS.gene38261:CDS | 25.0% |
| !! | ATTATATACTCTTAGGGTTT+TGG | - | chr5.3:77917734-77917753 | MS.gene38261:CDS | 25.0% |
| !!! | ATACTTTGAAATATTAGGGT+TGG | - | chr5.3:77918238-77918257 | MS.gene38261:CDS | 25.0% |
| !!! | CAATACTTTTTACAGTAACA+AGG | - | chr5.3:77917527-77917546 | MS.gene38261:CDS | 25.0% |
| !!! | TACTTTGAAATATTAGGGTT+GGG | - | chr5.3:77918239-77918258 | MS.gene38261:CDS | 25.0% |
| !!! | TGTTTTTATGAGTCAGAAAT+TGG | - | chr5.3:77918504-77918523 | MS.gene38261:CDS | 25.0% |
| ACTTTGACTATCATTGATAG+TGG | - | chr5.3:77918448-77918467 | MS.gene38261:CDS | 30.0% | |
| ATCTCTCTTGAAATGTTAAG+TGG | + | chr5.3:77919428-77919447 | None:intergenic | 30.0% | |
| GAAAAAGAAGAAGATTAAGG+AGG | - | chr5.3:77919067-77919086 | MS.gene38261:CDS | 30.0% | |
| TAGCTATCCAATTTCTCTTT+GGG | - | chr5.3:77918935-77918954 | MS.gene38261:CDS | 30.0% | |
| TATTGTTCTGATTCTTGTGT+TGG | - | chr5.3:77918311-77918330 | MS.gene38261:CDS | 30.0% | |
| TGAGGATGAAAAGAAAAAGA+TGG | - | chr5.3:77919904-77919923 | MS.gene38261:intron | 30.0% | |
| TGTTCAAACAACAACAACAA+CGG | + | chr5.3:77917793-77917812 | None:intergenic | 30.0% | |
| TTAACAAAGCTAAGATACTC+AGG | + | chr5.3:77919380-77919399 | None:intergenic | 30.0% | |
| TTAGCTATCCAATTTCTCTT+TGG | - | chr5.3:77918934-77918953 | MS.gene38261:CDS | 30.0% | |
| TTTGTGTCAAAGAGATCAAA+AGG | + | chr5.3:77919287-77919306 | None:intergenic | 30.0% | |
| ! | AAATATTAGGGTTGGGTTTT+AGG | - | chr5.3:77918246-77918265 | MS.gene38261:CDS | 30.0% |
| ! | GCATGATGATTTTATTGTTG+TGG | - | chr5.3:77918281-77918300 | MS.gene38261:CDS | 30.0% |
| ! | TCTGTTTTATGTTGCAGATT+TGG | - | chr5.3:77918578-77918597 | MS.gene38261:CDS | 30.0% |
| !! | AATGATAGTCAAAGTGTTGT+TGG | + | chr5.3:77918443-77918462 | None:intergenic | 30.0% |
| !! | AGACTACAACAAGTTTTATG+AGG | - | chr5.3:77919538-77919557 | MS.gene38261:intron | 30.0% |
| !! | ATCGGCACTTTAATTTTTGA+AGG | - | chr5.3:77918087-77918106 | MS.gene38261:CDS | 30.0% |
| !! | GAGTATCTTAGCTTTGTTAA+GGG | - | chr5.3:77919380-77919399 | MS.gene38261:intron | 30.0% |
| !! | TGAGTATCTTAGCTTTGTTA+AGG | - | chr5.3:77919379-77919398 | MS.gene38261:intron | 30.0% |
| AATAACTCTCATCCTAAAGG+AGG | - | chr5.3:77918848-77918867 | MS.gene38261:CDS | 35.0% | |
| ACATACAGCTTGATGTTGTT+GGG | + | chr5.3:77919317-77919336 | None:intergenic | 35.0% | |
| AGTTGTCCATGATGAAAACA+CGG | + | chr5.3:77919343-77919362 | None:intergenic | 35.0% | |
| ATAATGTGAATGAACAGCTC+TGG | + | chr5.3:77918409-77918428 | None:intergenic | 35.0% | |
| GAAAAAGATGGAAGAACAGA+AGG | - | chr5.3:77919916-77919935 | MS.gene38261:intron | 35.0% | |
| GAAGAAGAAGAAGCTTACAT+CGG | + | chr5.3:77917586-77917605 | None:intergenic | 35.0% | |
| GGATTGATATCAATACAAGC+CGG | + | chr5.3:77917997-77918016 | None:intergenic | 35.0% | |
| GGGATATGAAGTGATTTACA+TGG | - | chr5.3:77919784-77919803 | MS.gene38261:intron | 35.0% | |
| TAGTGTCTGCAACTAAAGAA+GGG | - | chr5.3:77919864-77919883 | MS.gene38261:intron | 35.0% | |
| TATAGCTTCCATGAATTCCT+TGG | + | chr5.3:77918637-77918656 | None:intergenic | 35.0% | |
| TCAACAGAACAAGATCCTTA+AGG | - | chr5.3:77919451-77919470 | MS.gene38261:CDS | 35.0% | |
| TTCTCAACCCAAAGAGAAAT+TGG | + | chr5.3:77918945-77918964 | None:intergenic | 35.0% | |
| ! | TTCTCTAAGAACTTGAAGCT+GGG | - | chr5.3:77919563-77919582 | MS.gene38261:intron | 35.0% |
| ! | TTGGATAAGATCCGTTTTGA+GGG | - | chr5.3:77918352-77918371 | MS.gene38261:CDS | 35.0% |
| ! | TTTCTCTAAGAACTTGAAGC+TGG | - | chr5.3:77919562-77919581 | MS.gene38261:intron | 35.0% |
| ! | TTTGGATAAGATCCGTTTTG+AGG | - | chr5.3:77918351-77918370 | MS.gene38261:CDS | 35.0% |
| !! | ACTATCATTGATAGTGGCAT+TGG | - | chr5.3:77918454-77918473 | MS.gene38261:CDS | 35.0% |
| !! | CTTTGAAATTGCTGAGAACA+AGG | - | chr5.3:77919514-77919533 | MS.gene38261:CDS | 35.0% |
| !! | TAGCTTTGTTAAGGGTATTG+TGG | - | chr5.3:77919388-77919407 | MS.gene38261:intron | 35.0% |
| !! | TATACTCTTAGGGTTTTGGT+TGG | - | chr5.3:77917738-77917757 | MS.gene38261:CDS | 35.0% |
| !! | TTAAGGAGGTGTCTAATGAA+TGG | - | chr5.3:77919081-77919100 | MS.gene38261:CDS | 35.0% |
| !!! | TCTTGTTTTGAGAATCCTCA+TGG | + | chr5.3:77919592-77919611 | None:intergenic | 35.0% |
| AACAGCTTTCTTGCTTTCAC+CGG | + | chr5.3:77919729-77919748 | None:intergenic | 40.0% | |
| ACAAGAGTCTCACCAATGAT+TGG | - | chr5.3:77919180-77919199 | MS.gene38261:CDS | 40.0% | |
| ACAAGATCCTTAAGGTCATC+AGG | - | chr5.3:77919459-77919478 | MS.gene38261:CDS | 40.0% | |
| AGTAGACGAGGAGAAAGAAA+AGG | - | chr5.3:77919037-77919056 | MS.gene38261:CDS | 40.0% | |
| AGTTCTTCCTGATGACCTTA+AGG | + | chr5.3:77919469-77919488 | None:intergenic | 40.0% | |
| CAAATGCTCTTCCCAATCAT+TGG | + | chr5.3:77919195-77919214 | None:intergenic | 40.0% | |
| CAAGAGTCTCACCAATGATT+GGG | - | chr5.3:77919181-77919200 | MS.gene38261:CDS | 40.0% | |
| CAATAACCTTCTCAGCAACA+AGG | + | chr5.3:77918719-77918738 | None:intergenic | 40.0% | |
| CAATCTTTGCAAGGTGATCA+AGG | - | chr5.3:77919949-77919968 | MS.gene38261:intron | 40.0% | |
| CAGGAATGACAAATCTGTGA+AGG | - | chr5.3:77920201-77920220 | MS.gene38261:intron | 40.0% | |
| CATGTCAAGCAAGAAGACAA+TGG | - | chr5.3:77920123-77920142 | MS.gene38261:intron | 40.0% | |
| CTAGTGTCTGCAACTAAAGA+AGG | - | chr5.3:77919863-77919882 | MS.gene38261:intron | 40.0% | |
| CTTGAGAAGCTTAGGAAGAA+GGG | - | chr5.3:77919764-77919783 | MS.gene38261:intron | 40.0% | |
| GAAAGAGATTTCTGACGATG+AGG | - | chr5.3:77918974-77918993 | MS.gene38261:CDS | 40.0% | |
| GAAGTTCGACAATCTTTGCA+AGG | - | chr5.3:77919940-77919959 | MS.gene38261:intron | 40.0% | |
| GAATGTTGTGTTGTAGGCTT+TGG | - | chr5.3:77918333-77918352 | MS.gene38261:CDS | 40.0% | |
| GACATACAGCTTGATGTTGT+TGG | + | chr5.3:77919318-77919337 | None:intergenic | 40.0% | |
| GCAATTGATGAGTATGCTGT+TGG | - | chr5.3:77919812-77919831 | MS.gene38261:intron | 40.0% | |
| GGATCAACTTGAGTATCTTG+AGG | - | chr5.3:77918869-77918888 | MS.gene38261:CDS | 40.0% | |
| GGTGTCTAATGAATGGTCTT+TGG | - | chr5.3:77919088-77919107 | MS.gene38261:CDS | 40.0% | |
| GTGAGTATGATTGGACAGTT+TGG | - | chr5.3:77918672-77918691 | MS.gene38261:CDS | 40.0% | |
| GTGTTGGAATGTTGTGTTGT+AGG | - | chr5.3:77918327-77918346 | MS.gene38261:CDS | 40.0% | |
| GTTAAGCACTTCTCTGTTGA+GGG | - | chr5.3:77919218-77919237 | MS.gene38261:CDS | 40.0% | |
| TAAGGTCATCAGGAAGAACT+TGG | - | chr5.3:77919469-77919488 | MS.gene38261:CDS | 40.0% | |
| TATGTTACCAGGATGAAGGA+AGG | - | chr5.3:77919680-77919699 | MS.gene38261:intron | 40.0% | |
| TCATCCTTTGTAATCTCCTC+TGG | + | chr5.3:77919146-77919165 | None:intergenic | 40.0% | |
| TCTTAACCAAGTCCTTCAGA+CGG | + | chr5.3:77918899-77918918 | None:intergenic | 40.0% | |
| TGAACAAGCAGAAGCCTATT+TGG | - | chr5.3:77919111-77919130 | MS.gene38261:CDS | 40.0% | |
| TGTTAAGCACTTCTCTGTTG+AGG | - | chr5.3:77919217-77919236 | MS.gene38261:CDS | 40.0% | |
| TGTTTAGTGACTGGTGAGTA+TGG | - | chr5.3:77920034-77920053 | MS.gene38261:intron | 40.0% | |
| TTCCTAAGCTTCTCAAGGAA+GGG | + | chr5.3:77919761-77919780 | None:intergenic | 40.0% | |
| TTTCATCATGGACAACTGTG+AGG | - | chr5.3:77919346-77919365 | MS.gene38261:intron | 40.0% | |
| ! | AAACGTTAGCTTACCAGCTT+TGG | + | chr5.3:77918485-77918504 | None:intergenic | 40.0% |
| ! | AATCCTGTTGCCAAAAGTGT+TGG | + | chr5.3:77920287-77920306 | None:intergenic | 40.0% |
| ! | AGAATCAAGCTTGCTCTTGT+CGG | + | chr5.3:77918383-77918402 | None:intergenic | 40.0% |
| ! | ATGATGACGAACAGTATGTG+TGG | - | chr5.3:77918754-77918773 | MS.gene38261:CDS | 40.0% |
| ! | TGATGACGAACAGTATGTGT+GGG | - | chr5.3:77918755-77918774 | MS.gene38261:CDS | 40.0% |
| !! | AAAGTGTTGTTGGTCTTGTC+AGG | + | chr5.3:77918433-77918452 | None:intergenic | 40.0% |
| !! | ACTCAAGTTGATCCTCCTTT+AGG | + | chr5.3:77918863-77918882 | None:intergenic | 40.0% |
| !! | AGATCAAAAGGTGCTCTCTT+GGG | + | chr5.3:77919275-77919294 | None:intergenic | 40.0% |
| !! | ATCCTGTTGCCAAAAGTGTT+GGG | + | chr5.3:77920286-77920305 | None:intergenic | 40.0% |
| !! | ATGATTGGACAGTTTGGTGT+TGG | - | chr5.3:77918678-77918697 | MS.gene38261:CDS | 40.0% |
| !! | CAATGATTGGGAAGAGCATT+TGG | - | chr5.3:77919193-77919212 | MS.gene38261:CDS | 40.0% |
| ACAACCTAGGTACCATTGCT+AGG | - | chr5.3:77918604-77918623 | MS.gene38261:CDS | 45.0% | |
| AGCAAGGAGAATCGACAACT+CGG | + | chr5.3:77920015-77920034 | None:intergenic | 45.0% | |
| AGCAGAAGCCTATTTGGATG+AGG | - | chr5.3:77919117-77919136 | MS.gene38261:CDS | 45.0% | |
| AGTAAATGACCCACCAGCTT+GGG | + | chr5.3:77918784-77918803 | None:intergenic | 45.0% | |
| ATTCACAGGATGCTCAAGCT+TGG | - | chr5.3:77920304-77920323 | MS.gene38261:intron | 45.0% | |
| ATTCTGTCCTTCCTTCATCC+TGG | + | chr5.3:77919690-77919709 | None:intergenic | 45.0% | |
| CAACATGGAGAGGATCATGA+AGG | - | chr5.3:77920066-77920085 | MS.gene38261:intron | 45.0% | |
| CCTTCTTCCTAAGCTTCTCA+AGG | + | chr5.3:77919766-77919785 | None:intergenic | 45.0% | |
| CCTTGAGAAGCTTAGGAAGA+AGG | - | chr5.3:77919763-77919782 | MS.gene38261:intron | 45.0% | |
| CTGTTCGTCATCATTGTGCT+TGG | + | chr5.3:77918748-77918767 | None:intergenic | 45.0% | |
| CTTCATGATCCTCTCCATGT+TGG | + | chr5.3:77920068-77920087 | None:intergenic | 45.0% | |
| CTTCCTAAGCTTCTCAAGGA+AGG | + | chr5.3:77919762-77919781 | None:intergenic | 45.0% | |
| GAAGAGAAGAAGGAAGAGGA+GGG | - | chr5.3:77919002-77919021 | MS.gene38261:CDS | 45.0% | |
| GAAGCCAGAGGAGATTACAA+AGG | - | chr5.3:77919139-77919158 | MS.gene38261:CDS | 45.0% | |
| GAGACTGCTCTTCTTACTTC+TGG | - | chr5.3:77920244-77920263 | MS.gene38261:intron | 45.0% | |
| GATACTACTGGTGAAGCTCT+TGG | - | chr5.3:77918813-77918832 | MS.gene38261:CDS | 45.0% | |
| GGACTATGTTACCAGGATGA+AGG | - | chr5.3:77919676-77919695 | MS.gene38261:intron | 45.0% | |
| GGTCAGCTCAAGGAATTTGA+GGG | - | chr5.3:77919833-77919852 | MS.gene38261:intron | 45.0% | |
| GTCTGGTACCAAGGAATTCA+TGG | - | chr5.3:77918626-77918645 | MS.gene38261:CDS | 45.0% | |
| GTTGAAACTTGACGAGAGTG+AGG | - | chr5.3:77919886-77919905 | MS.gene38261:intron | 45.0% | |
| TAAGGTTGAGGAAGTAGACG+AGG | - | chr5.3:77919025-77919044 | MS.gene38261:CDS | 45.0% | |
| TACTGGTGAAGCTCTTGGTA+GGG | - | chr5.3:77918818-77918837 | MS.gene38261:CDS | 45.0% | |
| TAGTGACTGGTGAGTATGGT+TGG | - | chr5.3:77920038-77920057 | MS.gene38261:intron | 45.0% | |
| TATTTGGATGAGGAAGCCAG+AGG | - | chr5.3:77919127-77919146 | MS.gene38261:CDS | 45.0% | |
| TCACCAGTCACTAAACAGCA+AGG | + | chr5.3:77920031-77920050 | None:intergenic | 45.0% | |
| TCCTAAGCTTCTCAAGGAAG+GGG | + | chr5.3:77919760-77919779 | None:intergenic | 45.0% | |
| TCCTGGTAACATAGTCCTTG+AGG | + | chr5.3:77919673-77919692 | None:intergenic | 45.0% | |
| TCTTTGCAAGGTGATCAAGG+AGG | - | chr5.3:77919952-77919971 | MS.gene38261:intron | 45.0% | |
| TGAGGGTCAGTTGGAGTTTA+AGG | - | chr5.3:77919235-77919254 | MS.gene38261:CDS | 45.0% | |
| TGCTTACCTTGTTGCTGAGA+AGG | - | chr5.3:77918710-77918729 | MS.gene38261:CDS | 45.0% | |
| TGGGTCATTTACTGTGACCA+GGG | - | chr5.3:77918791-77918810 | MS.gene38261:CDS | 45.0% | |
| TGGTCAGCTCAAGGAATTTG+AGG | - | chr5.3:77919832-77919851 | MS.gene38261:intron | 45.0% | |
| TGTCCATGATGAAAACACGG+CGG | + | chr5.3:77919340-77919359 | None:intergenic | 45.0% | |
| TTCATGGAAGCTATAGCTGC+TGG | - | chr5.3:77918642-77918661 | MS.gene38261:CDS | 45.0% | |
| TTCGTCATCATTGTGCTTGG+TGG | + | chr5.3:77918745-77918764 | None:intergenic | 45.0% | |
| ! | CATGAAGGCACAAGCTTTGA+GGG | - | chr5.3:77920081-77920100 | MS.gene38261:intron | 45.0% |
| ! | CTTGATGAGCCCAACACTTT+TGG | - | chr5.3:77920274-77920293 | MS.gene38261:intron | 45.0% |
| ! | CTTTTGGCAACAGGATTCAC+AGG | - | chr5.3:77920290-77920309 | MS.gene38261:intron | 45.0% |
| ! | GAAGTTGATTGATCTCAGCC+TGG | + | chr5.3:77917494-77917513 | None:intergenic | 45.0% |
| ! | TCATGAAGGCACAAGCTTTG+AGG | - | chr5.3:77920080-77920099 | MS.gene38261:intron | 45.0% |
| ! | TCTGGCTTCCTCATCCAAAT+AGG | + | chr5.3:77919128-77919147 | None:intergenic | 45.0% |
| !! | AAGGTGATCAAGGAGGTGTT+GGG | - | chr5.3:77919959-77919978 | MS.gene38261:intron | 45.0% |
| !! | CAAAAGTGTTGGGCTCATCA+AGG | + | chr5.3:77920276-77920295 | None:intergenic | 45.0% |
| !! | CAAAGCTTGCTGATTTGCTC+AGG | - | chr5.3:77919612-77919631 | MS.gene38261:intron | 45.0% |
| !! | GAGATCAAAAGGTGCTCTCT+TGG | + | chr5.3:77919276-77919295 | None:intergenic | 45.0% |
| !! | GCAGATTTGGTGAACAACCT+AGG | - | chr5.3:77918591-77918610 | MS.gene38261:CDS | 45.0% |
| !! | GCTTGGTCTTAGCATTGATG+AGG | - | chr5.3:77920321-77920340 | MS.gene38261:CDS | 45.0% |
| !! | GGTGCTGATGTGAGTATGAT+TGG | - | chr5.3:77918663-77918682 | MS.gene38261:CDS | 45.0% |
| !! | TAAGGGTATTGTGGACTCTG+AGG | - | chr5.3:77919397-77919416 | MS.gene38261:intron | 45.0% |
| !! | TCTCCTTGCTGTTTAGTGAC+TGG | - | chr5.3:77920025-77920044 | MS.gene38261:intron | 45.0% |
| !! | TTTGGTTGGTGGCGTTGTTT+AGG | - | chr5.3:77917752-77917771 | MS.gene38261:CDS | 45.0% |
| !!! | ACTCTTAGGGTTTTGGTTGG+TGG | - | chr5.3:77917741-77917760 | MS.gene38261:CDS | 45.0% |
| !!! | TTTTATTTTTTTGTTTATTA+GGG | - | chr5.3:77917611-77917630 | MS.gene38261:CDS | 5.0% |
| !!! | TTTTTATTTTTTTGTTTATT+AGG | - | chr5.3:77917610-77917629 | MS.gene38261:CDS | 5.0% |
| ACAAGAGACGTTCGCTTTCC+AGG | - | chr5.3:77917473-77917492 | MS.gene38261:CDS | 50.0% | |
| ACTGGTGAAGCTCTTGGTAG+GGG | - | chr5.3:77918819-77918838 | MS.gene38261:CDS | 50.0% | |
| ACTGTGACCAGGGATACTAC+TGG | - | chr5.3:77918801-77918820 | MS.gene38261:CDS | 50.0% | |
| AGAGGGAAGCAAGATGGAAG+AGG | - | chr5.3:77920399-77920418 | MS.gene38261:CDS | 50.0% | |
| AGCTTCACCAGTAGTATCCC+TGG | + | chr5.3:77918811-77918830 | None:intergenic | 50.0% | |
| CAACCCTGAGAATCCCATCA+TGG | - | chr5.3:77920150-77920169 | MS.gene38261:intron | 50.0% | |
| CAGACCTAGCAATGGTACCT+AGG | + | chr5.3:77918611-77918630 | None:intergenic | 50.0% | |
| CAGTAAATGACCCACCAGCT+TGG | + | chr5.3:77918785-77918804 | None:intergenic | 50.0% | |
| CATGTCATCACCACTCTTGG+TGG | + | chr5.3:77919645-77919664 | None:intergenic | 50.0% | |
| CATTGCTAGGTCTGGTACCA+AGG | - | chr5.3:77918617-77918636 | MS.gene38261:CDS | 50.0% | |
| CCTAAGCTTCTCAAGGAAGG+GGG | + | chr5.3:77919759-77919778 | None:intergenic | 50.0% | |
| CGAGGAAGAGAAGAAGGAAG+AGG | - | chr5.3:77918998-77919017 | MS.gene38261:CDS | 50.0% | |
| CTACTGGTGAAGCTCTTGGT+AGG | - | chr5.3:77918817-77918836 | MS.gene38261:CDS | 50.0% | |
| CTAGGTACCATTGCTAGGTC+TGG | - | chr5.3:77918609-77918628 | MS.gene38261:CDS | 50.0% | |
| CTTCTCTGTTGAGGGTCAGT+TGG | - | chr5.3:77919226-77919245 | MS.gene38261:CDS | 50.0% | |
| CTTGAAGCTGGGTATCCATG+AGG | - | chr5.3:77919574-77919593 | MS.gene38261:intron | 50.0% | |
| CTTGGTACCAGACCTAGCAA+TGG | + | chr5.3:77918619-77918638 | None:intergenic | 50.0% | |
| GAAGAAGGAAGAGGAGGGTA+AGG | - | chr5.3:77919007-77919026 | MS.gene38261:CDS | 50.0% | |
| GAAGCTGATGCTGATGCAGA+GGG | - | chr5.3:77920382-77920401 | MS.gene38261:CDS | 50.0% | |
| GATTTCTGACGATGAGGACG+AGG | - | chr5.3:77918980-77918999 | MS.gene38261:CDS | 50.0% | |
| GCCTCAAGGACTATGTTACC+AGG | - | chr5.3:77919669-77919688 | MS.gene38261:intron | 50.0% | |
| GGAAGAGAAGAAGGAAGAGG+AGG | - | chr5.3:77919001-77919020 | MS.gene38261:CDS | 50.0% | |
| GGGTGACAAGGTTGAGAAAG+TGG | - | chr5.3:77919979-77919998 | MS.gene38261:intron | 50.0% | |
| GGTAACATAGTCCTTGAGGC+TGG | + | chr5.3:77919669-77919688 | None:intergenic | 50.0% | |
| GGTCATGTCATCACCACTCT+TGG | + | chr5.3:77919648-77919667 | None:intergenic | 50.0% | |
| GTATGCTGTTGGTCAGCTCA+AGG | - | chr5.3:77919823-77919842 | MS.gene38261:intron | 50.0% | |
| GTATGGTTGGACTGCCAACA+TGG | - | chr5.3:77920051-77920070 | MS.gene38261:intron | 50.0% | |
| GTGGGTCATTTACTGTGACC+AGG | - | chr5.3:77918790-77918809 | MS.gene38261:CDS | 50.0% | |
| TCAGCATCAGCTTCCTCCAA+TGG | + | chr5.3:77920376-77920395 | None:intergenic | 50.0% | |
| TGAGGACGAGGAAGAGAAGA+AGG | - | chr5.3:77918992-77919011 | MS.gene38261:CDS | 50.0% | |
| TGATGACATGACCAGCCTCA+AGG | - | chr5.3:77919655-77919674 | MS.gene38261:intron | 50.0% | |
| TGATGCAGAGGGAAGCAAGA+TGG | - | chr5.3:77920393-77920412 | MS.gene38261:CDS | 50.0% | |
| TGATGCTGACATGCCACCAT+TGG | - | chr5.3:77920357-77920376 | MS.gene38261:CDS | 50.0% | |
| TGTCGGTCAAGCCCTCAAAA+CGG | + | chr5.3:77918366-77918385 | None:intergenic | 50.0% | |
| TTCCTCAGCTCCTCCATGAT+GGG | + | chr5.3:77920166-77920185 | None:intergenic | 50.0% | |
| TTTCCTCAGCTCCTCCATGA+TGG | + | chr5.3:77920167-77920186 | None:intergenic | 50.0% | |
| ! | AGCCCAACACTTTTGGCAAC+AGG | - | chr5.3:77920281-77920300 | MS.gene38261:intron | 50.0% |
| ! | CAAGGTGATCAAGGAGGTGT+TGG | - | chr5.3:77919958-77919977 | MS.gene38261:intron | 50.0% |
| ! | CCTCCATGATGGGATTCTCA+GGG | + | chr5.3:77920156-77920175 | None:intergenic | 50.0% |
| ! | GGCATTGGAATGACCAAAGC+TGG | - | chr5.3:77918469-77918488 | MS.gene38261:CDS | 50.0% |
| ! | TCCTCCATGATGGGATTCTC+AGG | + | chr5.3:77920157-77920176 | None:intergenic | 50.0% |
| ! | TGTCCGCCGTGTTTTCATCA+TGG | - | chr5.3:77919334-77919353 | MS.gene38261:intron | 50.0% |
| !! | AGCTTTGAGGGATAGCAGCA+TGG | - | chr5.3:77920093-77920112 | MS.gene38261:intron | 50.0% |
| AGGTACCACTCCACCAAGAG+TGG | - | chr5.3:77919632-77919651 | MS.gene38261:intron | 55.0% | |
| ATCCCATCATGGAGGAGCTG+AGG | - | chr5.3:77920161-77920180 | MS.gene38261:intron | 55.0% | |
| CATCACCACTCTTGGTGGAG+TGG | + | chr5.3:77919640-77919659 | None:intergenic | 55.0% | |
| CCCCCTTCCTTGAGAAGCTT+AGG | - | chr5.3:77919756-77919775 | MS.gene38261:intron | 55.0% | |
| CCCTGAGAATCCCATCATGG+AGG | - | chr5.3:77920153-77920172 | MS.gene38261:intron | 55.0% | |
| GCATCAGCTTCCTCCAATGG+TGG | + | chr5.3:77920373-77920392 | None:intergenic | 55.0% | |
| GGAAGAGGAGGGTAAGGTTG+AGG | - | chr5.3:77919013-77919032 | MS.gene38261:CDS | 55.0% | |
| GGAAGCTGATGCTGATGCAG+AGG | - | chr5.3:77920381-77920400 | MS.gene38261:CDS | 55.0% | |
| GTTGGACTGCCAACATGGAG+AGG | - | chr5.3:77920056-77920075 | MS.gene38261:intron | 55.0% | |
| TATGTGTGGGAGTCCCAAGC+TGG | - | chr5.3:77918768-77918787 | MS.gene38261:CDS | 55.0% | |
| TCTTGAGGAACGCCGTCTGA+AGG | - | chr5.3:77918884-77918903 | MS.gene38261:CDS | 55.0% | |
| TGCTGACATGCCACCATTGG+AGG | - | chr5.3:77920360-77920379 | MS.gene38261:CDS | 55.0% | |
| TTGAGGGATAGCAGCATGGC+TGG | - | chr5.3:77920097-77920116 | MS.gene38261:intron | 55.0% | |
| ! | GGAAACGTGCTGATGCTGAC+AGG | - | chr5.3:77920182-77920201 | MS.gene38261:intron | 55.0% |
| !! | CAAGGAGGTGTTGGGTGACA+AGG | - | chr5.3:77919967-77919986 | MS.gene38261:intron | 55.0% |
| GGAACGCCGTCTGAAGGACT+TGG | - | chr5.3:77918890-77918909 | MS.gene38261:CDS | 60.0% | |
| TGTGGGAGTCCCAAGCTGGT+GGG | - | chr5.3:77918772-77918791 | MS.gene38261:CDS | 60.0% | |
| GTGTGGGAGTCCCAAGCTGG+TGG | - | chr5.3:77918771-77918790 | MS.gene38261:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 77917465 | 77920429 | 77917465 | ID=MS.gene38261 |
| chr5.3 | mRNA | 77917465 | 77920429 | 77917465 | ID=MS.gene38261.t1;Parent=MS.gene38261 |
| chr5.3 | exon | 77920307 | 77920429 | 77920307 | ID=MS.gene38261.t1.exon1;Parent=MS.gene38261.t1 |
| chr5.3 | CDS | 77920307 | 77920429 | 77920307 | ID=cds.MS.gene38261.t1;Parent=MS.gene38261.t1 |
| chr5.3 | exon | 77919404 | 77919545 | 77919404 | ID=MS.gene38261.t1.exon2;Parent=MS.gene38261.t1 |
| chr5.3 | CDS | 77919404 | 77919545 | 77919404 | ID=cds.MS.gene38261.t1;Parent=MS.gene38261.t1 |
| chr5.3 | exon | 77917465 | 77919299 | 77917465 | ID=MS.gene38261.t1.exon3;Parent=MS.gene38261.t1 |
| chr5.3 | CDS | 77917465 | 77919299 | 77917465 | ID=cds.MS.gene38261.t1;Parent=MS.gene38261.t1 |
| Gene Sequence |
| Protein sequence |
