Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37988.t1 | XP_004491530.1 | 97.6 | 699 | 17 | 0 | 1 | 699 | 1 | 699 | 0.00E+00 | 1244.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37988.t1 | P36181 | 93.0 | 699 | 49 | 0 | 1 | 699 | 1 | 699 | 0.0e+00 | 1198.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37988.t1 | A0A1S2XPL0 | 97.6 | 699 | 17 | 0 | 1 | 699 | 1 | 699 | 0.0e+00 | 1244.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene37988 | 0.802517 | 5.40E-49 | -1.69E-46 |
| MS.gene049166 | MS.gene37988 | 0.821034 | 5.00E-53 | -1.69E-46 |
| MS.gene04917 | MS.gene37988 | 0.801573 | 8.45E-49 | -1.69E-46 |
| MS.gene04984 | MS.gene37988 | 0.801932 | 7.13E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene37988 | 0.802328 | 5.91E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene37988 | 0.802103 | 6.58E-49 | -1.69E-46 |
| MS.gene050317 | MS.gene37988 | 0.815802 | 7.67E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene37988 | -0.804785 | 1.83E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene37988 | 0.843118 | 1.71E-58 | -1.69E-46 |
| MS.gene050838 | MS.gene37988 | 0.816608 | 5.07E-52 | -1.69E-46 |
| MS.gene050941 | MS.gene37988 | 0.831141 | 1.98E-55 | -1.69E-46 |
| MS.gene051003 | MS.gene37988 | 0.829143 | 6.07E-55 | -1.69E-46 |
| MS.gene051234 | MS.gene37988 | 0.809115 | 2.22E-50 | -1.69E-46 |
| MS.gene051757 | MS.gene37988 | 0.800552 | 1.37E-48 | -1.69E-46 |
| MS.gene051831 | MS.gene37988 | 0.805476 | 1.31E-49 | -1.69E-46 |
| MS.gene052335 | MS.gene37988 | 0.803091 | 4.11E-49 | -1.69E-46 |
| MS.gene052342 | MS.gene37988 | 0.820819 | 5.61E-53 | -1.69E-46 |
| MS.gene052434 | MS.gene37988 | 0.84103 | 6.08E-58 | -1.69E-46 |
| MS.gene053058 | MS.gene37988 | 0.832403 | 9.64E-56 | -1.69E-46 |
| MS.gene053381 | MS.gene37988 | 0.835141 | 1.99E-56 | -1.69E-46 |
| MS.gene055311 | MS.gene37988 | 0.844332 | 8.07E-59 | -1.69E-46 |
| MS.gene055313 | MS.gene37988 | 0.820999 | 5.10E-53 | -1.69E-46 |
| MS.gene055314 | MS.gene37988 | 0.81302 | 3.16E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene37988 | 0.802613 | 5.16E-49 | -1.69E-46 |
| MS.gene055979 | MS.gene37988 | 0.806977 | 6.33E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene37988 | 0.805253 | 1.46E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene37988 | 0.850265 | 1.90E-60 | -1.69E-46 |
| MS.gene056752 | MS.gene37988 | 0.809917 | 1.49E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene37988 | 0.824516 | 7.74E-54 | -1.69E-46 |
| MS.gene056849 | MS.gene37988 | 0.829031 | 6.46E-55 | -1.69E-46 |
| MS.gene057721 | MS.gene37988 | 0.841987 | 3.40E-58 | -1.69E-46 |
| MS.gene05781 | MS.gene37988 | 0.809093 | 2.24E-50 | -1.69E-46 |
| MS.gene058278 | MS.gene37988 | 0.82157 | 3.76E-53 | -1.69E-46 |
| MS.gene058646 | MS.gene37988 | 0.81434 | 1.62E-51 | -1.69E-46 |
| MS.gene058654 | MS.gene37988 | 0.81411 | 1.82E-51 | -1.69E-46 |
| MS.gene058758 | MS.gene37988 | 0.83015 | 3.45E-55 | -1.69E-46 |
| MS.gene059050 | MS.gene37988 | 0.803779 | 2.96E-49 | -1.69E-46 |
| MS.gene059170 | MS.gene37988 | 0.812567 | 3.97E-51 | -1.69E-46 |
| MS.gene059290 | MS.gene37988 | 0.871522 | 6.41E-67 | -1.69E-46 |
| MS.gene06010 | MS.gene37988 | 0.826794 | 2.23E-54 | -1.69E-46 |
| MS.gene06011 | MS.gene37988 | 0.825451 | 4.66E-54 | -1.69E-46 |
| MS.gene060296 | MS.gene37988 | 0.806935 | 6.46E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene37988 | 0.808881 | 2.49E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene37988 | 0.805046 | 1.61E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene37988 | 0.847922 | 8.51E-60 | -1.69E-46 |
| MS.gene060870 | MS.gene37988 | 0.85209 | 5.80E-61 | -1.69E-46 |
| MS.gene060932 | MS.gene37988 | 0.827811 | 1.27E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37988 | MS.gene38210 | PPI |
| MS.gene37988 | MS.gene020834 | PPI |
| MS.gene37988 | MS.gene60613 | PPI |
| MS.gene37988 | MS.gene020833 | PPI |
| MS.gene37988 | MS.gene38262 | PPI |
| MS.gene37988 | MS.gene061126 | PPI |
| MS.gene37988 | MS.gene37989 | PPI |
| MS.gene24136 | MS.gene37988 | PPI |
| MS.gene37988 | MS.gene38261 | PPI |
| MS.gene37989 | MS.gene37988 | PPI |
| MS.gene37988 | MS.gene49154 | PPI |
| MS.gene37988 | MS.gene006231 | PPI |
| MS.gene37988 | MS.gene75388 | PPI |
| MS.gene37988 | MS.gene029690 | PPI |
| MS.gene81288 | MS.gene37988 | PPI |
| MS.gene37988 | MS.gene62123 | PPI |
| MS.gene37988 | MS.gene64023 | PPI |
| MS.gene37988 | MS.gene38049 | PPI |
| MS.gene37988 | MS.gene75389 | PPI |
| MS.gene37988 | MS.gene64024 | PPI |
| MS.gene37988 | MS.gene30654 | PPI |
| MS.gene37988 | MS.gene040499 | PPI |
| MS.gene37988 | MS.gene27084 | PPI |
| MS.gene37988 | MS.gene81285 | PPI |
| MS.gene58998 | MS.gene37988 | PPI |
| MS.gene37988 | MS.gene64225 | PPI |
| MS.gene37988 | MS.gene62607 | PPI |
| MS.gene37988 | MS.gene81288 | PPI |
| MS.gene81227 | MS.gene37988 | PPI |
| MS.gene37988 | MS.gene020886 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37988.t1 | MTR_5g096430 | 99.857 | 699 | 1 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1419 |
| MS.gene37988.t1 | MTR_5g096460 | 99.857 | 699 | 1 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1419 |
| MS.gene37988.t1 | MTR_6g452990 | 88.160 | 701 | 79 | 3 | 1 | 699 | 1 | 699 | 0.0 | 1186 |
| MS.gene37988.t1 | MTR_1g099840 | 84.692 | 699 | 92 | 2 | 1 | 699 | 6 | 689 | 0.0 | 1146 |
| MS.gene37988.t1 | MTR_1g025430 | 48.867 | 706 | 320 | 8 | 5 | 673 | 78 | 779 | 0.0 | 642 |
| MS.gene37988.t1 | MTR_5g097320 | 45.562 | 676 | 345 | 10 | 5 | 667 | 90 | 755 | 0.0 | 577 |
| MS.gene37988.t1 | MTR_0009s0390 | 45.634 | 710 | 354 | 13 | 5 | 698 | 82 | 775 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37988.t1 | AT5G56000 | 90.714 | 700 | 63 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1205 |
| MS.gene37988.t1 | AT5G56030 | 92.286 | 700 | 52 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1196 |
| MS.gene37988.t1 | AT5G56010 | 92.000 | 700 | 54 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1194 |
| MS.gene37988.t1 | AT5G56030 | 88.615 | 729 | 52 | 3 | 1 | 699 | 1 | 728 | 0.0 | 1181 |
| MS.gene37988.t1 | AT5G52640 | 85.185 | 702 | 99 | 5 | 1 | 699 | 1 | 700 | 0.0 | 1148 |
| MS.gene37988.t1 | AT4G24190 | 50.356 | 703 | 310 | 8 | 5 | 672 | 77 | 775 | 0.0 | 643 |
| MS.gene37988.t1 | AT4G24190 | 50.356 | 703 | 310 | 8 | 5 | 672 | 77 | 775 | 0.0 | 642 |
| MS.gene37988.t1 | AT2G04030 | 47.485 | 676 | 329 | 11 | 5 | 668 | 77 | 738 | 0.0 | 597 |
| MS.gene37988.t1 | AT3G07770 | 45.495 | 677 | 346 | 10 | 5 | 668 | 95 | 761 | 0.0 | 590 |
| MS.gene37988.t1 | AT3G07770 | 45.495 | 677 | 346 | 10 | 5 | 668 | 95 | 761 | 0.0 | 590 |
| MS.gene37988.t1 | AT3G07770 | 45.495 | 677 | 346 | 10 | 5 | 668 | 95 | 761 | 0.0 | 590 |
| MS.gene37988.t1 | AT2G04030 | 47.033 | 674 | 332 | 11 | 5 | 668 | 77 | 735 | 0.0 | 588 |
Find 180 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGGTCAGTTGGAGTTTA+AGG | 0.170053 | 5.1:-76869506 | MS.gene37988:CDS |
| GAGACTGCTCTTCTTACTTC+TGG | 0.243959 | 5.1:-76868497 | MS.gene37988:CDS |
| ACAAGAGACGTTTGCTTTCC+AGG | 0.252769 | 5.1:-76871281 | MS.gene37988:CDS |
| TTCTCAACCCAAAGAGAAAT+TGG | 0.256773 | 5.1:+76869799 | None:intergenic |
| TTAGCTATCCAATTTCTCTT+TGG | 0.269210 | 5.1:-76869807 | MS.gene37988:CDS |
| CTTGATGAGCCCAACACTTT+TGG | 0.271765 | 5.1:-76868467 | MS.gene37988:CDS |
| TAGCTATCCAATTTCTCTTT+GGG | 0.282969 | 5.1:-76869806 | MS.gene37988:CDS |
| ACTATCATTGATAGTGGAAT+TGG | 0.289715 | 5.1:-76870303 | MS.gene37988:CDS |
| TGAACAAGCAGAAACCTATT+TGG | 0.309637 | 5.1:-76869630 | MS.gene37988:CDS |
| TCAGGCTTCCTCATCCAAAT+AGG | 0.316564 | 5.1:+76869616 | None:intergenic |
| TCGTCCTTTGTGATCTCTTC+AGG | 0.317508 | 5.1:+76869598 | None:intergenic |
| CAATGATTGGGAAGAGCATT+TGG | 0.328642 | 5.1:-76869548 | MS.gene37988:CDS |
| TCCTCCATGATGGGATTCTC+AGG | 0.339757 | 5.1:+76868587 | None:intergenic |
| ACAAGAGTCTTACCAATGAT+TGG | 0.356089 | 5.1:-76869561 | MS.gene37988:CDS |
| TGTTTAGTGACTGGTGAGTA+TGG | 0.358330 | 5.1:-76868707 | MS.gene37988:CDS |
| GACATACAGCTTGATGTTGT+TGG | 0.373069 | 5.1:+76869426 | None:intergenic |
| CAAGGTGTTGTTGGTCTTGT+CGG | 0.374216 | 5.1:+76870326 | None:intergenic |
| GTCTGGTACCAAGGAATTCA+TGG | 0.376590 | 5.1:-76870115 | MS.gene37988:CDS |
| GAGATCAAAAGGTGCTCTCT+TGG | 0.380844 | 5.1:+76869468 | None:intergenic |
| AATGACATTTACTACATTAC+CGG | 0.381181 | 5.1:-76869034 | MS.gene37988:CDS |
| AGTTCTTCCTGATGACCTTA+AGG | 0.384170 | 5.1:+76869275 | None:intergenic |
| AAATGTCTACTTACCAGCTT+TGG | 0.386852 | 5.1:+76870275 | None:intergenic |
| ACATACAGCTTGATGTTGTT+GGG | 0.394439 | 5.1:+76869427 | None:intergenic |
| GAAGAAGGAAGAGGAGGGTA+AGG | 0.417477 | 5.1:-76869734 | MS.gene37988:CDS |
| GGTGCTGATGTGAGCATGAT+TGG | 0.424255 | 5.1:-76870078 | MS.gene37988:CDS |
| AAGGTGTTGTTGGTCTTGTC+GGG | 0.426420 | 5.1:+76870327 | None:intergenic |
| CGAGGAAGAGAAGAAGGAAG+AGG | 0.429375 | 5.1:-76869743 | MS.gene37988:CDS |
| GGTCATGTCATCACCACTCT+TGG | 0.434025 | 5.1:+76869096 | None:intergenic |
| GGAAGAGGAGGGTAAGGTTG+AGG | 0.435286 | 5.1:-76869728 | MS.gene37988:CDS |
| CTTCTCTGTTGAGGGTCAGT+TGG | 0.437261 | 5.1:-76869515 | MS.gene37988:CDS |
| ACAAGATCCTTAAGGTCATC+AGG | 0.437555 | 5.1:-76869282 | MS.gene37988:CDS |
| CATGAAGGCACAAGCTTTGA+GGG | 0.445178 | 5.1:-76868660 | MS.gene37988:CDS |
| TTTGTGTCAAAGAGATCAAA+AGG | 0.446679 | 5.1:+76869457 | None:intergenic |
| GTTAAGCACTTCTCTGTTGA+GGG | 0.447502 | 5.1:-76869523 | MS.gene37988:CDS |
| TTCATCATCATTGTGCTTGG+TGG | 0.449045 | 5.1:+76869999 | None:intergenic |
| GGTGGTTACAATAACCTTCT+CGG | 0.449161 | 5.1:+76870017 | None:intergenic |
| CAAGAGTCTTACCAATGATT+GGG | 0.452966 | 5.1:-76869560 | MS.gene37988:CDS |
| AATGATAGTCAAGGTGTTGT+TGG | 0.456218 | 5.1:+76870317 | None:intergenic |
| GTGAGCATGATTGGACAGTT+TGG | 0.458431 | 5.1:-76870069 | MS.gene37988:CDS |
| CCTTGAGAAGCTTAGGAAGA+AGG | 0.459680 | 5.1:-76868978 | MS.gene37988:CDS |
| AGATCAAAAGGTGCTCTCTT+GGG | 0.466194 | 5.1:+76869469 | None:intergenic |
| CCTTAAGGATCTTGTTCTGT+TGG | 0.468703 | 5.1:+76869290 | None:intergenic |
| TGGTCAGCTCAAGGAATTTG+AGG | 0.468755 | 5.1:-76868909 | MS.gene37988:CDS |
| CAAATGCTCTTCCCAATCAT+TGG | 0.471135 | 5.1:+76869549 | None:intergenic |
| TGTTAAGCACTTCTCTGTTG+AGG | 0.472630 | 5.1:-76869524 | MS.gene37988:CDS |
| ACCTTGACTATCATTGATAG+TGG | 0.474059 | 5.1:-76870309 | MS.gene37988:CDS |
| TTCCTCAGCTCCTCCATGAT+GGG | 0.474148 | 5.1:+76868578 | None:intergenic |
| GTGGGTCATTCACTGTGACT+AGG | 0.475823 | 5.1:-76869951 | MS.gene37988:CDS |
| TTTCTCTAAGAACTTGAAGC+TGG | 0.477075 | 5.1:-76869179 | MS.gene37988:CDS |
| TATGGCTTCCATGAATTCCT+TGG | 0.477216 | 5.1:+76870107 | None:intergenic |
| TTGAGGGATAGCAGCATGGC+TGG | 0.477457 | 5.1:-76868644 | MS.gene37988:CDS |
| TCATGAAGGCACAAGCTTTG+AGG | 0.479345 | 5.1:-76868661 | MS.gene37988:CDS |
| TGAGGACGAGGAAGAGAAGA+AGG | 0.480741 | 5.1:-76869749 | MS.gene37988:CDS |
| TGGGTCATTCACTGTGACTA+GGG | 0.481620 | 5.1:-76869950 | MS.gene37988:CDS |
| AGAATCAAGCTTGCTCTTGT+CGG | 0.482487 | 5.1:+76870377 | None:intergenic |
| CAACTGGTGAAGCTCTTGGC+AGG | 0.483720 | 5.1:-76869924 | MS.gene37988:CDS |
| TGCTTACCTTGTTGCCGAGA+AGG | 0.484230 | 5.1:-76870031 | MS.gene37988:CDS |
| CTTTGAAATTGCTGAGAACA+AGG | 0.486596 | 5.1:-76869227 | MS.gene37988:CDS |
| GGAAGAGAAGAAGGAAGAGG+AGG | 0.487208 | 5.1:-76869740 | MS.gene37988:CDS |
| CATGTCATCACCACTCTTGG+TGG | 0.488480 | 5.1:+76869099 | None:intergenic |
| ATTCTGTCCTTCCTTCATCC+TGG | 0.488551 | 5.1:+76869054 | None:intergenic |
| CTAAGCTTGCTGATTTGCTC+AGG | 0.489387 | 5.1:-76869129 | MS.gene37988:CDS |
| GGTGTCTAATGAATGGTCTT+TGG | 0.492991 | 5.1:-76869653 | MS.gene37988:CDS |
| TAGCTTTGTGAAGGGTATTG+TGG | 0.493429 | 5.1:-76869353 | MS.gene37988:CDS |
| GGAACGCCGTCTGAAGGACT+TGG | 0.493605 | 5.1:-76869851 | MS.gene37988:CDS |
| AACAGCTTTCTTGCTTTCAC+CGG | 0.494202 | 5.1:+76869015 | None:intergenic |
| CTTCCTAAGCTTCTCAAGGA+AGG | 0.495109 | 5.1:+76868982 | None:intergenic |
| CACATCAGCACCAGCAGCTA+TGG | 0.497912 | 5.1:+76870089 | None:intergenic |
| CCAACAGAACAAGATCCTTA+AGG | 0.498684 | 5.1:-76869290 | MS.gene37988:CDS |
| AGTAGATGAGGAGAAAGAAA+AGG | 0.499471 | 5.1:-76869704 | MS.gene37988:CDS |
| GGGTGACAAGGTTGAGAAAG+TGG | 0.499707 | 5.1:-76868762 | MS.gene37988:CDS |
| CTTCACAAAGCTAAGATACT+CGG | 0.499785 | 5.1:+76869363 | None:intergenic |
| GGAATTGGAATGACCAAAGC+TGG | 0.500501 | 5.1:-76870288 | MS.gene37988:intron |
| GATACAACTGGTGAAGCTCT+TGG | 0.501895 | 5.1:-76869928 | MS.gene37988:CDS |
| CTAGGTACCATTGCTAGGTC+TGG | 0.502477 | 5.1:-76870132 | MS.gene37988:CDS |
| GAAGAGAAGAAGGAAGAGGA+GGG | 0.502813 | 5.1:-76869739 | MS.gene37988:CDS |
| CAACCTCTGCAAGGTGATCA+AGG | 0.503281 | 5.1:-76868792 | MS.gene37988:CDS |
| TCTCCTTGCTGTTTAGTGAC+TGG | 0.506819 | 5.1:-76868716 | MS.gene37988:CDS |
| ATGATTGGACAGTTTGGTGT+TGG | 0.507013 | 5.1:-76870063 | MS.gene37988:CDS |
| TTTCCTCAGCTCCTCCATGA+TGG | 0.507054 | 5.1:+76868577 | None:intergenic |
| CTGGTGTCTGCAACTAAAGA+AGG | 0.507420 | 5.1:-76868878 | MS.gene37988:CDS |
| CTTGAGAAGCTTAGGAAGAA+GGG | 0.508184 | 5.1:-76868977 | MS.gene37988:CDS |
| TTCCTAAGCTTCTCAAGGAA+GGG | 0.510661 | 5.1:+76868983 | None:intergenic |
| TGTCGGTCAAGCCCTCGAAC+CGG | 0.513753 | 5.1:+76870394 | None:intergenic |
| TCCTAAGCTTCTCAAGGAAG+GGG | 0.515007 | 5.1:+76868984 | None:intergenic |
| CTTCATGATCCTCTCCATGT+TGG | 0.521693 | 5.1:+76868676 | None:intergenic |
| TTTGGATAAGATCCGGTTCG+AGG | 0.521954 | 5.1:-76870406 | MS.gene37988:CDS |
| TGCTGACATGCCACCATTGG+AGG | 0.530142 | 5.1:-76868381 | MS.gene37988:CDS |
| ATCCTGTTGCCAAAAGTGTT+GGG | 0.532827 | 5.1:+76868458 | None:intergenic |
| ATTTCTCTAGAAATGTTAAG+TGG | 0.534445 | 5.1:+76869316 | None:intergenic |
| ATTCACAGGATGCTCAAGCT+TGG | 0.534491 | 5.1:-76868437 | MS.gene37988:CDS |
| TCAGCATCAGCTTCCTCCAA+TGG | 0.535356 | 5.1:+76868368 | None:intergenic |
| CATTGCTAGGTCTGGTACCA+AGG | 0.535688 | 5.1:-76870124 | MS.gene37988:CDS |
| TTAAGGAGGTGTCTAATGAA+TGG | 0.538054 | 5.1:-76869660 | MS.gene37988:CDS |
| AATCCTGTTGCCAAAAGTGT+TGG | 0.544511 | 5.1:+76868457 | None:intergenic |
| CTGTTCATCATCATTGTGCT+TGG | 0.544768 | 5.1:+76869996 | None:intergenic |
| TGATGCTGACATGCCACCAT+TGG | 0.545200 | 5.1:-76868384 | MS.gene37988:CDS |
| TAAGGTTGAGGAAGTAGATG+AGG | 0.545318 | 5.1:-76869716 | MS.gene37988:CDS |
| CGAGTATCTTAGCTTTGTGA+AGG | 0.545418 | 5.1:-76869362 | MS.gene37988:CDS |
| CAAGGTGATCAAGGAAGTGT+TGG | 0.545818 | 5.1:-76868783 | MS.gene37988:CDS |
| TTCTCTAAGAACTTGAAGCT+GGG | 0.547307 | 5.1:-76869178 | MS.gene37988:CDS |
| TTCATGGAAGCCATAGCTGC+TGG | 0.547466 | 5.1:-76870099 | MS.gene37988:CDS |
| GGTCAGCTCAAGGAATTTGA+GGG | 0.548038 | 5.1:-76868908 | MS.gene37988:CDS |
| TGTAGGCTTTGGATAAGATC+CGG | 0.549604 | 5.1:-76870413 | MS.gene37988:intron |
| GGAATTTGAGGGTAAGAAGC+TGG | 0.549736 | 5.1:-76868897 | MS.gene37988:CDS |
| TAAGGTCATCAGGAAGAACT+TGG | 0.555403 | 5.1:-76869272 | MS.gene37988:CDS |
| CCTTCTTCCTAAGCTTCTCA+AGG | 0.555668 | 5.1:+76868978 | None:intergenic |
| GTGTGGGAGTCTCAAGCTGG+TGG | 0.562825 | 5.1:-76869970 | MS.gene37988:CDS |
| GGAAACGTGCTGATGCTGAC+AGG | 0.562915 | 5.1:-76868559 | MS.gene37988:CDS |
| TAGTGACTGGTGAGTATGGT+TGG | 0.563826 | 5.1:-76868703 | MS.gene37988:CDS |
| CCAGATTTGGTGAACAACCT+AGG | 0.564348 | 5.1:-76870150 | MS.gene37988:intron |
| GGACTATGTTACCAGGATGA+AGG | 0.567325 | 5.1:-76869065 | MS.gene37988:CDS |
| GAAAGAGATTTCTGATGATG+AGG | 0.568419 | 5.1:-76869767 | MS.gene37988:CDS |
| TCTTGAGGAACGCCGTCTGA+AGG | 0.568654 | 5.1:-76869857 | MS.gene37988:CDS |
| CAAAAGTGTTGGGCTCATCA+AGG | 0.569013 | 5.1:+76868468 | None:intergenic |
| AGCAGAAACCTATTTGGATG+AGG | 0.569320 | 5.1:-76869624 | MS.gene37988:CDS |
| AGAGGGAAGCAAGATGGAAG+AGG | 0.571151 | 5.1:-76868342 | MS.gene37988:CDS |
| CAAGGAAGTGTTGGGTGACA+AGG | 0.575150 | 5.1:-76868774 | MS.gene37988:CDS |
| GGTAACATAGTCCTTGAGGC+TGG | 0.577318 | 5.1:+76869075 | None:intergenic |
| GGGATATGAAGTGATTTACA+TGG | 0.578493 | 5.1:-76868957 | MS.gene37988:CDS |
| CCTCCATGATGGGATTCTCA+GGG | 0.578771 | 5.1:+76868588 | None:intergenic |
| ACAACCTAGGTACCATTGCT+AGG | 0.579010 | 5.1:-76870137 | MS.gene37988:CDS |
| CAATAACCTTCTCGGCAACA+AGG | 0.579875 | 5.1:+76870025 | None:intergenic |
| TTGGATAAGATCCGGTTCGA+GGG | 0.582423 | 5.1:-76870405 | MS.gene37988:CDS |
| CTTCCTTGATCACCTTGCAG+AGG | 0.584163 | 5.1:+76868789 | None:intergenic |
| ACTGGTGAAGCTCTTGGCAG+GGG | 0.584964 | 5.1:-76869922 | MS.gene37988:CDS |
| GAAGTTGATTGATCTCAGCC+TGG | 0.587212 | 5.1:+76871263 | None:intergenic |
| AACTGGTGAAGCTCTTGGCA+GGG | 0.587596 | 5.1:-76869923 | MS.gene37988:CDS |
| TTCACAAAGCTAAGATACTC+GGG | 0.588682 | 5.1:+76869364 | None:intergenic |
| CAGACCTAGCAATGGTACCT+AGG | 0.590700 | 5.1:+76870133 | None:intergenic |
| CATCACCACTCTTGGTGGAG+TGG | 0.592725 | 5.1:+76869104 | None:intergenic |
| ACTGTGACTAGGGATACAAC+TGG | 0.593814 | 5.1:-76869940 | MS.gene37988:CDS |
| CAACCCTGAGAATCCCATCA+TGG | 0.597286 | 5.1:-76868591 | MS.gene37988:CDS |
| ATCCCATCATGGAGGAGCTG+AGG | 0.597622 | 5.1:-76868580 | MS.gene37988:CDS |
| GTATGCTGTTGGTCAGCTCA+AGG | 0.599835 | 5.1:-76868918 | MS.gene37988:CDS |
| TTTGAAACTTGACGAGAGTG+AGG | 0.601282 | 5.1:-76868855 | MS.gene37988:CDS |
| GAAGCTGATGCTGATGCAGA+GGG | 0.602230 | 5.1:-76868359 | MS.gene37988:CDS |
| TGATGCAGAGGGAAGCAAGA+TGG | 0.604134 | 5.1:-76868348 | MS.gene37988:CDS |
| CAGGAATGACAAATCTGTGA+AGG | 0.605359 | 5.1:-76868540 | MS.gene37988:CDS |
| TAAGATAACTCTCATCCTCA+AGG | 0.608541 | 5.1:-76869896 | MS.gene37988:CDS |
| GATTTCTGATGATGAGGACG+AGG | 0.608743 | 5.1:-76869761 | MS.gene37988:CDS |
| TCCTGGTAACATAGTCCTTG+AGG | 0.608835 | 5.1:+76869071 | None:intergenic |
| GCCTCAAGGACTATGTTACC+AGG | 0.610223 | 5.1:-76869072 | MS.gene37988:CDS |
| CATGTCAAGCAAGAAGACAA+TGG | 0.611061 | 5.1:-76868618 | MS.gene37988:CDS |
| ATAATGTGAATGAACAACTC+TGG | 0.613595 | 5.1:+76870351 | None:intergenic |
| TCCACTATCAATGATAGTCA+AGG | 0.615433 | 5.1:+76870308 | None:intergenic |
| AGCTTTGAGGGATAGCAGCA+TGG | 0.615872 | 5.1:-76868648 | MS.gene37988:CDS |
| TATGTGTGGGAGTCTCAAGC+TGG | 0.618590 | 5.1:-76869973 | MS.gene37988:CDS |
| GCTTGGTCTTAGCATTGATG+AGG | 0.619021 | 5.1:-76868420 | MS.gene37988:CDS |
| CAACATGGAGAGGATCATGA+AGG | 0.620851 | 5.1:-76868675 | MS.gene37988:CDS |
| AGCAAGGAGAATCGACTACA+CGG | 0.627669 | 5.1:+76868729 | None:intergenic |
| GGATCAACTTGAGTATCTTG+AGG | 0.629396 | 5.1:-76869872 | MS.gene37988:CDS |
| GAGTATCTTAGCTTTGTGAA+GGG | 0.631738 | 5.1:-76869361 | MS.gene37988:CDS |
| TGTGGGAGTCTCAAGCTGGT+GGG | 0.632292 | 5.1:-76869969 | MS.gene37988:CDS |
| GAAGTTCGACAACCTCTGCA+AGG | 0.633525 | 5.1:-76868801 | MS.gene37988:CDS |
| AGGTACCACTCCACCAAGAG+TGG | 0.636721 | 5.1:-76869109 | MS.gene37988:CDS |
| GCAATTGATGAGTATGCTGT+TGG | 0.641021 | 5.1:-76868929 | MS.gene37988:CDS |
| GTATGGTTGGACTGCCAACA+TGG | 0.641083 | 5.1:-76868690 | MS.gene37988:CDS |
| ACTCAAGTTGATCCTCCTTG+AGG | 0.641638 | 5.1:+76869881 | None:intergenic |
| TCTTAACCAAGTCCTTCAGA+CGG | 0.644789 | 5.1:+76869845 | None:intergenic |
| GCATCAGCTTCCTCCAATGG+TGG | 0.651686 | 5.1:+76868371 | None:intergenic |
| TGATGACATGACCAGCCTCA+AGG | 0.657377 | 5.1:-76869086 | MS.gene37988:CDS |
| CCTAAGCTTCTCAAGGAAGG+GGG | 0.664638 | 5.1:+76868985 | None:intergenic |
| GTTGGACTGCCAACATGGAG+AGG | 0.668192 | 5.1:-76868685 | MS.gene37988:CDS |
| TATGTTACCAGGATGAAGGA+AGG | 0.670222 | 5.1:-76869061 | MS.gene37988:CDS |
| GGAAGCTGATGCTGATGCAG+AGG | 0.671926 | 5.1:-76868360 | MS.gene37988:CDS |
| AAGGTGATCAAGGAAGTGTT+GGG | 0.674917 | 5.1:-76868782 | MS.gene37988:CDS |
| ATGATGATGAACAGTATGTG+TGG | 0.676362 | 5.1:-76869987 | MS.gene37988:CDS |
| AGTTGTCCATGATGAAAACA+CGG | 0.681053 | 5.1:+76869401 | None:intergenic |
| TCACCAGTCACTAAACAGCA+AGG | 0.682332 | 5.1:+76868713 | None:intergenic |
| GAAGGGTATTGTGGACTCTG+AGG | 0.693168 | 5.1:-76869344 | MS.gene37988:CDS |
| CTTGAAGCTGGGTATCCATG+AGG | 0.697436 | 5.1:-76869167 | MS.gene37988:CDS |
| CTTGGTACCAGACCTAGCAA+TGG | 0.700707 | 5.1:+76870125 | None:intergenic |
| CAATTTCAAAGAAAAGCTCG+AGG | 0.701411 | 5.1:+76869239 | None:intergenic |
| TTTCATCATGGACAACTGTG+AGG | 0.702798 | 5.1:-76869395 | MS.gene37988:CDS |
| GAAGCCTGAAGAGATCACAA+AGG | 0.708675 | 5.1:-76869602 | MS.gene37988:CDS |
| GATAACTCTCATCCTCAAGG+AGG | 0.715531 | 5.1:-76869893 | MS.gene37988:CDS |
| CCCTGAGAATCCCATCATGG+AGG | 0.716906 | 5.1:-76868588 | MS.gene37988:CDS |
| TGATGATGAACAGTATGTGT+GGG | 0.717373 | 5.1:-76869986 | MS.gene37988:CDS |
| TGTCCATGATGAAAACACGG+CGG | 0.827708 | 5.1:+76869404 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTATTTTTTTCAATTTTA+GGG | - | chr5.1:76868566-76868585 | MS.gene37988:CDS | 10.0% |
| !! | ACTTTCATTCAAATAATTAA+AGG | + | chr5.1:76868980-76868999 | None:intergenic | 15.0% |
| !! | TATGATTATTACTATTACTT+TGG | - | chr5.1:76869090-76869109 | MS.gene37988:CDS | 15.0% |
| !! | TGTAATGTTATTGATATAAT+CGG | - | chr5.1:76868922-76868941 | MS.gene37988:CDS | 15.0% |
| !! | TTAAAATTCAATTTCAATGT+AGG | + | chr5.1:76868819-76868838 | None:intergenic | 15.0% |
| !!! | AAATTGAATTTTAATTAGTC+TGG | - | chr5.1:76868825-76868844 | MS.gene37988:CDS | 15.0% |
| !!! | CTCTTTTTTTTTGTTTATTA+GGG | - | chr5.1:76868476-76868495 | MS.gene37988:CDS | 15.0% |
| !!! | GGATTATTTTTTTCAATTTT+AGG | - | chr5.1:76868565-76868584 | MS.gene37988:CDS | 15.0% |
| !! | AAAAATAGATCACGTAATTA+GGG | + | chr5.1:76868867-76868886 | None:intergenic | 20.0% |
| !! | TAAAAATAGATCACGTAATT+AGG | + | chr5.1:76868868-76868887 | None:intergenic | 20.0% |
| !!! | ATCAACTCTTAATTTTTGAA+TGG | - | chr5.1:76869031-76869050 | MS.gene37988:CDS | 20.0% |
| !!! | GCTCTTTTTTTTTGTTTATT+AGG | - | chr5.1:76868475-76868494 | MS.gene37988:CDS | 20.0% |
| !!! | TAATCATACTTTGAAAAACA+TGG | + | chr5.1:76869078-76869097 | None:intergenic | 20.0% |
| !!! | TCTTTGGTTATGTTTTTTAT+TGG | - | chr5.1:76868544-76868563 | MS.gene37988:CDS | 20.0% |
| !!! | TGATTATGATGAATTTTCTT+TGG | - | chr5.1:76868528-76868547 | MS.gene37988:CDS | 20.0% |
| ! | AATGACATTTACTACATTAC+CGG | - | chr5.1:76870589-76870608 | MS.gene37988:intron | 25.0% |
| ! | ACTATTACTTTGGATTGTTA+GGG | - | chr5.1:76869100-76869119 | MS.gene37988:CDS | 25.0% |
| ! | ATTTCAATGTAGGTATTTCA+AGG | + | chr5.1:76868809-76868828 | None:intergenic | 25.0% |
| ! | CAACTATGAAAAAAGACATT+CGG | + | chr5.1:76868769-76868788 | None:intergenic | 25.0% |
| ! | GAAGAAAAAGAAGAAGATTA+AGG | - | chr5.1:76869946-76869965 | MS.gene37988:CDS | 25.0% |
| ! | TACTATTACTTTGGATTGTT+AGG | - | chr5.1:76869099-76869118 | MS.gene37988:CDS | 25.0% |
| !! | ATTTCTCTAGAAATGTTAAG+TGG | + | chr5.1:76870310-76870329 | None:intergenic | 25.0% |
| !! | TATATTGTTAGGGTTTTTCT+CGG | - | chr5.1:76868606-76868625 | MS.gene37988:CDS | 25.0% |
| !!! | ATCGGTAGTTTAATTTTTGA+AGG | - | chr5.1:76868940-76868959 | MS.gene37988:CDS | 25.0% |
| !!! | CAATACTTTTTACAGTAACA+AGG | - | chr5.1:76868396-76868415 | MS.gene37988:CDS | 25.0% |
| !!! | CTTTTTTCTGATTCTGAAAT+TGG | - | chr5.1:76869383-76869402 | MS.gene37988:CDS | 25.0% |
| ATAATGTGAATGAACAACTC+TGG | + | chr5.1:76869275-76869294 | None:intergenic | 30.0% | |
| CAGAATCAGAAAAAAGAAAG+AGG | + | chr5.1:76869379-76869398 | None:intergenic | 30.0% | |
| CTAGCTAATTAACGTTATCT+TGG | - | chr5.1:76868736-76868755 | MS.gene37988:CDS | 30.0% | |
| GAAAAAGAAGAAGATTAAGG+AGG | - | chr5.1:76869949-76869968 | MS.gene37988:CDS | 30.0% | |
| GCATAAATTATCACACAACA+TGG | + | chr5.1:76869423-76869442 | None:intergenic | 30.0% | |
| TAGCTATCCAATTTCTCTTT+GGG | - | chr5.1:76869817-76869836 | MS.gene37988:CDS | 30.0% | |
| TATTGTTCTGATACTTGTGT+TGG | - | chr5.1:76869177-76869196 | MS.gene37988:CDS | 30.0% | |
| TGAGGATGAAAAGAAAAAGA+TGG | - | chr5.1:76870786-76870805 | MS.gene37988:intron | 30.0% | |
| TTAGCTATCCAATTTCTCTT+TGG | - | chr5.1:76869816-76869835 | MS.gene37988:CDS | 30.0% | |
| TTTGTGTCAAAGAGATCAAA+AGG | + | chr5.1:76870169-76870188 | None:intergenic | 30.0% | |
| !! | ACTATCATTGATAGTGGAAT+TGG | - | chr5.1:76869320-76869339 | MS.gene37988:CDS | 30.0% |
| !! | AGACTACAACAAGTTTTATG+AGG | - | chr5.1:76870420-76870439 | MS.gene37988:intron | 30.0% |
| !! | ATAGTGATGATTTGTTAGTC+AGG | - | chr5.1:76868677-76868696 | MS.gene37988:CDS | 30.0% |
| !! | ATGATTTGTTAGTCAGGTTT+AGG | - | chr5.1:76868683-76868702 | MS.gene37988:CDS | 30.0% |
| !!! | CTGTTTTTATGTTCCAGATT+TGG | - | chr5.1:76869460-76869479 | MS.gene37988:CDS | 30.0% |
| AAATGTCTACTTACCAGCTT+TGG | + | chr5.1:76869351-76869370 | None:intergenic | 35.0% | |
| ACAAGAGTCTTACCAATGAT+TGG | - | chr5.1:76870062-76870081 | MS.gene37988:CDS | 35.0% | |
| ACATACAGCTTGATGTTGTT+GGG | + | chr5.1:76870199-76870218 | None:intergenic | 35.0% | |
| ACCTTGACTATCATTGATAG+TGG | - | chr5.1:76869314-76869333 | MS.gene37988:CDS | 35.0% | |
| AGTAGATGAGGAGAAAGAAA+AGG | - | chr5.1:76869919-76869938 | MS.gene37988:CDS | 35.0% | |
| AGTTGTCCATGATGAAAACA+CGG | + | chr5.1:76870225-76870244 | None:intergenic | 35.0% | |
| CAAGAGTCTTACCAATGATT+GGG | - | chr5.1:76870063-76870082 | MS.gene37988:CDS | 35.0% | |
| CAATTTCAAAGAAAAGCTCG+AGG | + | chr5.1:76870387-76870406 | None:intergenic | 35.0% | |
| CTTCACAAAGCTAAGATACT+CGG | + | chr5.1:76870263-76870282 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGCTTACAT+CGG | + | chr5.1:76868455-76868474 | None:intergenic | 35.0% | |
| GGGATATGAAGTGATTTACA+TGG | - | chr5.1:76870666-76870685 | MS.gene37988:intron | 35.0% | |
| TAAGATAACTCTCATCCTCA+AGG | - | chr5.1:76869727-76869746 | MS.gene37988:CDS | 35.0% | |
| TCCACTATCAATGATAGTCA+AGG | + | chr5.1:76869318-76869337 | None:intergenic | 35.0% | |
| TGAACAAGCAGAAACCTATT+TGG | - | chr5.1:76869993-76870012 | MS.gene37988:CDS | 35.0% | |
| TTACTTTGGATTGTTAGGGT+TGG | - | chr5.1:76869104-76869123 | MS.gene37988:CDS | 35.0% | |
| TTCACAAAGCTAAGATACTC+GGG | + | chr5.1:76870262-76870281 | None:intergenic | 35.0% | |
| TTCTCAACCCAAAGAGAAAT+TGG | + | chr5.1:76869827-76869846 | None:intergenic | 35.0% | |
| ! | ATGATGATGAACAGTATGTG+TGG | - | chr5.1:76869636-76869655 | MS.gene37988:CDS | 35.0% |
| ! | GAAAGAGATTTCTGATGATG+AGG | - | chr5.1:76869856-76869875 | MS.gene37988:CDS | 35.0% |
| ! | TGATGATGAACAGTATGTGT+GGG | - | chr5.1:76869637-76869656 | MS.gene37988:CDS | 35.0% |
| ! | TTCTCTAAGAACTTGAAGCT+GGG | - | chr5.1:76870445-76870464 | MS.gene37988:intron | 35.0% |
| ! | TTTCTCTAAGAACTTGAAGC+TGG | - | chr5.1:76870444-76870463 | MS.gene37988:intron | 35.0% |
| !! | AATGATAGTCAAGGTGTTGT+TGG | + | chr5.1:76869309-76869328 | None:intergenic | 35.0% |
| !! | ATAGATGCTTTTGTTGTCGT+GGG | - | chr5.1:76869148-76869167 | MS.gene37988:CDS | 35.0% |
| !! | CTTTGAAATTGCTGAGAACA+AGG | - | chr5.1:76870396-76870415 | MS.gene37988:CDS | 35.0% |
| !! | GAGTATCTTAGCTTTGTGAA+GGG | - | chr5.1:76870262-76870281 | MS.gene37988:intron | 35.0% |
| !! | TTAAGGAGGTGTCTAATGAA+TGG | - | chr5.1:76869963-76869982 | MS.gene37988:CDS | 35.0% |
| !!! | TCTTGTTTTGAGAATCCTCA+TGG | + | chr5.1:76870474-76870493 | None:intergenic | 35.0% |
| AACAGCTTTCTTGCTTTCAC+CGG | + | chr5.1:76870611-76870630 | None:intergenic | 40.0% | |
| ACAAGATCCTTAAGGTCATC+AGG | - | chr5.1:76870341-76870360 | MS.gene37988:CDS | 40.0% | |
| AGCAGAAACCTATTTGGATG+AGG | - | chr5.1:76869999-76870018 | MS.gene37988:CDS | 40.0% | |
| AGTTCTTCCTGATGACCTTA+AGG | + | chr5.1:76870351-76870370 | None:intergenic | 40.0% | |
| CAAATGCTCTTCCCAATCAT+TGG | + | chr5.1:76870077-76870096 | None:intergenic | 40.0% | |
| CAGGAATGACAAATCTGTGA+AGG | - | chr5.1:76871083-76871102 | MS.gene37988:intron | 40.0% | |
| CATGTCAAGCAAGAAGACAA+TGG | - | chr5.1:76871005-76871024 | MS.gene37988:intron | 40.0% | |
| CCAACAGAACAAGATCCTTA+AGG | - | chr5.1:76870333-76870352 | MS.gene37988:CDS | 40.0% | |
| CCTTAAGGATCTTGTTCTGT+TGG | + | chr5.1:76870336-76870355 | None:intergenic | 40.0% | |
| CTGTTCATCATCATTGTGCT+TGG | + | chr5.1:76869630-76869649 | None:intergenic | 40.0% | |
| CTTGAGAAGCTTAGGAAGAA+GGG | - | chr5.1:76870646-76870665 | MS.gene37988:intron | 40.0% | |
| GAAAAAGATGGAAGAGCAGA+AGG | - | chr5.1:76870798-76870817 | MS.gene37988:intron | 40.0% | |
| GAATGTTGTGATGTAGGCTT+TGG | - | chr5.1:76869199-76869218 | MS.gene37988:CDS | 40.0% | |
| GACATACAGCTTGATGTTGT+TGG | + | chr5.1:76870200-76870219 | None:intergenic | 40.0% | |
| GCAATTGATGAGTATGCTGT+TGG | - | chr5.1:76870694-76870713 | MS.gene37988:intron | 40.0% | |
| GGATCAACTTGAGTATCTTG+AGG | - | chr5.1:76869751-76869770 | MS.gene37988:CDS | 40.0% | |
| GGTGGTTACAATAACCTTCT+CGG | + | chr5.1:76869609-76869628 | None:intergenic | 40.0% | |
| GGTGTCTAATGAATGGTCTT+TGG | - | chr5.1:76869970-76869989 | MS.gene37988:CDS | 40.0% | |
| GTGTTGGAATGTTGTGATGT+AGG | - | chr5.1:76869193-76869212 | MS.gene37988:CDS | 40.0% | |
| GTTAAGCACTTCTCTGTTGA+GGG | - | chr5.1:76870100-76870119 | MS.gene37988:CDS | 40.0% | |
| TAAGGTCATCAGGAAGAACT+TGG | - | chr5.1:76870351-76870370 | MS.gene37988:CDS | 40.0% | |
| TAAGGTTGAGGAAGTAGATG+AGG | - | chr5.1:76869907-76869926 | MS.gene37988:CDS | 40.0% | |
| TATGGCTTCCATGAATTCCT+TGG | + | chr5.1:76869519-76869538 | None:intergenic | 40.0% | |
| TATGTTACCAGGATGAAGGA+AGG | - | chr5.1:76870562-76870581 | MS.gene37988:intron | 40.0% | |
| TCTTAACCAAGTCCTTCAGA+CGG | + | chr5.1:76869781-76869800 | None:intergenic | 40.0% | |
| TGTTAAGCACTTCTCTGTTG+AGG | - | chr5.1:76870099-76870118 | MS.gene37988:CDS | 40.0% | |
| TGTTTAGTGACTGGTGAGTA+TGG | - | chr5.1:76870916-76870935 | MS.gene37988:intron | 40.0% | |
| TTCATCATCATTGTGCTTGG+TGG | + | chr5.1:76869627-76869646 | None:intergenic | 40.0% | |
| TTCCTAAGCTTCTCAAGGAA+GGG | + | chr5.1:76870643-76870662 | None:intergenic | 40.0% | |
| TTTCATCATGGACAACTGTG+AGG | - | chr5.1:76870228-76870247 | MS.gene37988:intron | 40.0% | |
| ! | AATCCTGTTGCCAAAAGTGT+TGG | + | chr5.1:76871169-76871188 | None:intergenic | 40.0% |
| ! | AGAATCAAGCTTGCTCTTGT+CGG | + | chr5.1:76869249-76869268 | None:intergenic | 40.0% |
| ! | TTTGAAACTTGACGAGAGTG+AGG | - | chr5.1:76870768-76870787 | MS.gene37988:intron | 40.0% |
| !! | AAGGTGATCAAGGAAGTGTT+GGG | - | chr5.1:76870841-76870860 | MS.gene37988:intron | 40.0% |
| !! | AGATCAAAAGGTGCTCTCTT+GGG | + | chr5.1:76870157-76870176 | None:intergenic | 40.0% |
| !! | ATCCTGTTGCCAAAAGTGTT+GGG | + | chr5.1:76871168-76871187 | None:intergenic | 40.0% |
| !! | ATGATTGGACAGTTTGGTGT+TGG | - | chr5.1:76869560-76869579 | MS.gene37988:CDS | 40.0% |
| !! | CAATGATTGGGAAGAGCATT+TGG | - | chr5.1:76870075-76870094 | MS.gene37988:CDS | 40.0% |
| !! | CGAGTATCTTAGCTTTGTGA+AGG | - | chr5.1:76870261-76870280 | MS.gene37988:intron | 40.0% |
| !! | GATAGATGCTTTTGTTGTCG+TGG | - | chr5.1:76869147-76869166 | MS.gene37988:CDS | 40.0% |
| !! | TAGCTTTGTGAAGGGTATTG+TGG | - | chr5.1:76870270-76870289 | MS.gene37988:intron | 40.0% |
| !! | TGTAGGCTTTGGATAAGATC+CGG | - | chr5.1:76869210-76869229 | MS.gene37988:CDS | 40.0% |
| ACAACCTAGGTACCATTGCT+AGG | - | chr5.1:76869486-76869505 | MS.gene37988:CDS | 45.0% | |
| ACAAGAGACGTTTGCTTTCC+AGG | - | chr5.1:76868342-76868361 | MS.gene37988:CDS | 45.0% | |
| ACTGTGACTAGGGATACAAC+TGG | - | chr5.1:76869683-76869702 | MS.gene37988:CDS | 45.0% | |
| AGCAAGGAGAATCGACTACA+CGG | + | chr5.1:76870897-76870916 | None:intergenic | 45.0% | |
| ATTCACAGGATGCTCAAGCT+TGG | - | chr5.1:76871186-76871205 | MS.gene37988:intron | 45.0% | |
| ATTCTGTCCTTCCTTCATCC+TGG | + | chr5.1:76870572-76870591 | None:intergenic | 45.0% | |
| CAACATGGAGAGGATCATGA+AGG | - | chr5.1:76870948-76870967 | MS.gene37988:intron | 45.0% | |
| CAATAACCTTCTCGGCAACA+AGG | + | chr5.1:76869601-76869620 | None:intergenic | 45.0% | |
| CCTAGGTTGTTCACCAAATC+TGG | + | chr5.1:76869476-76869495 | None:intergenic | 45.0% | |
| CCTTCTTCCTAAGCTTCTCA+AGG | + | chr5.1:76870648-76870667 | None:intergenic | 45.0% | |
| CCTTGAGAAGCTTAGGAAGA+AGG | - | chr5.1:76870645-76870664 | MS.gene37988:intron | 45.0% | |
| CTGGTGTCTGCAACTAAAGA+AGG | - | chr5.1:76870745-76870764 | MS.gene37988:intron | 45.0% | |
| CTTCATGATCCTCTCCATGT+TGG | + | chr5.1:76870950-76870969 | None:intergenic | 45.0% | |
| CTTCCTAAGCTTCTCAAGGA+AGG | + | chr5.1:76870644-76870663 | None:intergenic | 45.0% | |
| GAAGAGAAGAAGGAAGAGGA+GGG | - | chr5.1:76869884-76869903 | MS.gene37988:CDS | 45.0% | |
| GAAGCCTGAAGAGATCACAA+AGG | - | chr5.1:76870021-76870040 | MS.gene37988:CDS | 45.0% | |
| GAGACTGCTCTTCTTACTTC+TGG | - | chr5.1:76871126-76871145 | MS.gene37988:intron | 45.0% | |
| GATAACTCTCATCCTCAAGG+AGG | - | chr5.1:76869730-76869749 | MS.gene37988:CDS | 45.0% | |
| GATACAACTGGTGAAGCTCT+TGG | - | chr5.1:76869695-76869714 | MS.gene37988:CDS | 45.0% | |
| GGAATTGGAATGACCAAAGC+TGG | - | chr5.1:76869335-76869354 | MS.gene37988:CDS | 45.0% | |
| GGAATTTGAGGGTAAGAAGC+TGG | - | chr5.1:76870726-76870745 | MS.gene37988:intron | 45.0% | |
| GGACTATGTTACCAGGATGA+AGG | - | chr5.1:76870558-76870577 | MS.gene37988:intron | 45.0% | |
| GGTCAGCTCAAGGAATTTGA+GGG | - | chr5.1:76870715-76870734 | MS.gene37988:intron | 45.0% | |
| GTCTGGTACCAAGGAATTCA+TGG | - | chr5.1:76869508-76869527 | MS.gene37988:CDS | 45.0% | |
| GTGAGCATGATTGGACAGTT+TGG | - | chr5.1:76869554-76869573 | MS.gene37988:CDS | 45.0% | |
| TAGTGACTGGTGAGTATGGT+TGG | - | chr5.1:76870920-76870939 | MS.gene37988:intron | 45.0% | |
| TCACCAGTCACTAAACAGCA+AGG | + | chr5.1:76870913-76870932 | None:intergenic | 45.0% | |
| TCAGGCTTCCTCATCCAAAT+AGG | + | chr5.1:76870010-76870029 | None:intergenic | 45.0% | |
| TCCTAAGCTTCTCAAGGAAG+GGG | + | chr5.1:76870642-76870661 | None:intergenic | 45.0% | |
| TCCTGGTAACATAGTCCTTG+AGG | + | chr5.1:76870555-76870574 | None:intergenic | 45.0% | |
| TCGTCCTTTGTGATCTCTTC+AGG | + | chr5.1:76870028-76870047 | None:intergenic | 45.0% | |
| TGAGGGTCAGTTGGAGTTTA+AGG | - | chr5.1:76870117-76870136 | MS.gene37988:CDS | 45.0% | |
| TGGGTCATTCACTGTGACTA+GGG | - | chr5.1:76869673-76869692 | MS.gene37988:CDS | 45.0% | |
| TGGTCAGCTCAAGGAATTTG+AGG | - | chr5.1:76870714-76870733 | MS.gene37988:intron | 45.0% | |
| TGTCCATGATGAAAACACGG+CGG | + | chr5.1:76870222-76870241 | None:intergenic | 45.0% | |
| ! | CAAGGTGATCAAGGAAGTGT+TGG | - | chr5.1:76870840-76870859 | MS.gene37988:intron | 45.0% |
| ! | CATGAAGGCACAAGCTTTGA+GGG | - | chr5.1:76870963-76870982 | MS.gene37988:intron | 45.0% |
| ! | CTTGATGAGCCCAACACTTT+TGG | - | chr5.1:76871156-76871175 | MS.gene37988:intron | 45.0% |
| ! | CTTTTGGCAACAGGATTCAC+AGG | - | chr5.1:76871172-76871191 | MS.gene37988:intron | 45.0% |
| ! | GAAGTTGATTGATCTCAGCC+TGG | + | chr5.1:76868363-76868382 | None:intergenic | 45.0% |
| ! | GATTTCTGATGATGAGGACG+AGG | - | chr5.1:76869862-76869881 | MS.gene37988:CDS | 45.0% |
| ! | TCATGAAGGCACAAGCTTTG+AGG | - | chr5.1:76870962-76870981 | MS.gene37988:intron | 45.0% |
| ! | TTGGATAAGATCCGGTTCGA+GGG | - | chr5.1:76869218-76869237 | MS.gene37988:CDS | 45.0% |
| ! | TTTGGATAAGATCCGGTTCG+AGG | - | chr5.1:76869217-76869236 | MS.gene37988:CDS | 45.0% |
| !! | AAGGTGTTGTTGGTCTTGTC+GGG | + | chr5.1:76869299-76869318 | None:intergenic | 45.0% |
| !! | ACTCAAGTTGATCCTCCTTG+AGG | + | chr5.1:76869745-76869764 | None:intergenic | 45.0% |
| !! | CAAAAGTGTTGGGCTCATCA+AGG | + | chr5.1:76871158-76871177 | None:intergenic | 45.0% |
| !! | CAAGGTGTTGTTGGTCTTGT+CGG | + | chr5.1:76869300-76869319 | None:intergenic | 45.0% |
| !! | CCAGATTTGGTGAACAACCT+AGG | - | chr5.1:76869473-76869492 | MS.gene37988:CDS | 45.0% |
| !! | CTAAGCTTGCTGATTTGCTC+AGG | - | chr5.1:76870494-76870513 | MS.gene37988:intron | 45.0% |
| !! | GAGATCAAAAGGTGCTCTCT+TGG | + | chr5.1:76870158-76870177 | None:intergenic | 45.0% |
| !! | GCTTGGTCTTAGCATTGATG+AGG | - | chr5.1:76871203-76871222 | MS.gene37988:CDS | 45.0% |
| !! | TCTCCTTGCTGTTTAGTGAC+TGG | - | chr5.1:76870907-76870926 | MS.gene37988:intron | 45.0% |
| !! | TAATTAATTATATATTGTTA+GGG | - | chr5.1:76868596-76868615 | MS.gene37988:CDS | 5.0% |
| !! | TTAATTAATTATATATTGTT+AGG | - | chr5.1:76868595-76868614 | MS.gene37988:CDS | 5.0% |
| AACTGGTGAAGCTCTTGGCA+GGG | - | chr5.1:76869700-76869719 | MS.gene37988:CDS | 50.0% | |
| AGAGGGAAGCAAGATGGAAG+AGG | - | chr5.1:76871281-76871300 | MS.gene37988:CDS | 50.0% | |
| CAACCCTGAGAATCCCATCA+TGG | - | chr5.1:76871032-76871051 | MS.gene37988:intron | 50.0% | |
| CAACCTCTGCAAGGTGATCA+AGG | - | chr5.1:76870831-76870850 | MS.gene37988:intron | 50.0% | |
| CAGACCTAGCAATGGTACCT+AGG | + | chr5.1:76869493-76869512 | None:intergenic | 50.0% | |
| CATGTCATCACCACTCTTGG+TGG | + | chr5.1:76870527-76870546 | None:intergenic | 50.0% | |
| CATTGCTAGGTCTGGTACCA+AGG | - | chr5.1:76869499-76869518 | MS.gene37988:CDS | 50.0% | |
| CCTAAGCTTCTCAAGGAAGG+GGG | + | chr5.1:76870641-76870660 | None:intergenic | 50.0% | |
| CGAGGAAGAGAAGAAGGAAG+AGG | - | chr5.1:76869880-76869899 | MS.gene37988:CDS | 50.0% | |
| CTAGGTACCATTGCTAGGTC+TGG | - | chr5.1:76869491-76869510 | MS.gene37988:CDS | 50.0% | |
| CTTCCTTGATCACCTTGCAG+AGG | + | chr5.1:76870837-76870856 | None:intergenic | 50.0% | |
| CTTCTCTGTTGAGGGTCAGT+TGG | - | chr5.1:76870108-76870127 | MS.gene37988:CDS | 50.0% | |
| CTTGAAGCTGGGTATCCATG+AGG | - | chr5.1:76870456-76870475 | MS.gene37988:intron | 50.0% | |
| CTTGGTACCAGACCTAGCAA+TGG | + | chr5.1:76869501-76869520 | None:intergenic | 50.0% | |
| GAAGAAGGAAGAGGAGGGTA+AGG | - | chr5.1:76869889-76869908 | MS.gene37988:CDS | 50.0% | |
| GAAGCTGATGCTGATGCAGA+GGG | - | chr5.1:76871264-76871283 | MS.gene37988:CDS | 50.0% | |
| GAAGTTCGACAACCTCTGCA+AGG | - | chr5.1:76870822-76870841 | MS.gene37988:intron | 50.0% | |
| GCCTCAAGGACTATGTTACC+AGG | - | chr5.1:76870551-76870570 | MS.gene37988:intron | 50.0% | |
| GGAAGAGAAGAAGGAAGAGG+AGG | - | chr5.1:76869883-76869902 | MS.gene37988:CDS | 50.0% | |
| GGGTGACAAGGTTGAGAAAG+TGG | - | chr5.1:76870861-76870880 | MS.gene37988:intron | 50.0% | |
| GGTAACATAGTCCTTGAGGC+TGG | + | chr5.1:76870551-76870570 | None:intergenic | 50.0% | |
| GGTCATGTCATCACCACTCT+TGG | + | chr5.1:76870530-76870549 | None:intergenic | 50.0% | |
| GTATGCTGTTGGTCAGCTCA+AGG | - | chr5.1:76870705-76870724 | MS.gene37988:intron | 50.0% | |
| GTATGGTTGGACTGCCAACA+TGG | - | chr5.1:76870933-76870952 | MS.gene37988:intron | 50.0% | |
| GTGGGTCATTCACTGTGACT+AGG | - | chr5.1:76869672-76869691 | MS.gene37988:CDS | 50.0% | |
| TATGTGTGGGAGTCTCAAGC+TGG | - | chr5.1:76869650-76869669 | MS.gene37988:CDS | 50.0% | |
| TCAGCATCAGCTTCCTCCAA+TGG | + | chr5.1:76871258-76871277 | None:intergenic | 50.0% | |
| TGAGGACGAGGAAGAGAAGA+AGG | - | chr5.1:76869874-76869893 | MS.gene37988:CDS | 50.0% | |
| TGATGACATGACCAGCCTCA+AGG | - | chr5.1:76870537-76870556 | MS.gene37988:intron | 50.0% | |
| TGATGCAGAGGGAAGCAAGA+TGG | - | chr5.1:76871275-76871294 | MS.gene37988:CDS | 50.0% | |
| TGATGCTGACATGCCACCAT+TGG | - | chr5.1:76871239-76871258 | MS.gene37988:CDS | 50.0% | |
| TGCTTACCTTGTTGCCGAGA+AGG | - | chr5.1:76869592-76869611 | MS.gene37988:CDS | 50.0% | |
| TTCATGGAAGCCATAGCTGC+TGG | - | chr5.1:76869524-76869543 | MS.gene37988:CDS | 50.0% | |
| TTCCTCAGCTCCTCCATGAT+GGG | + | chr5.1:76871048-76871067 | None:intergenic | 50.0% | |
| TTTCCTCAGCTCCTCCATGA+TGG | + | chr5.1:76871049-76871068 | None:intergenic | 50.0% | |
| ! | AGCCCAACACTTTTGGCAAC+AGG | - | chr5.1:76871163-76871182 | MS.gene37988:intron | 50.0% |
| ! | CCTCCATGATGGGATTCTCA+GGG | + | chr5.1:76871038-76871057 | None:intergenic | 50.0% |
| ! | TCCTCCATGATGGGATTCTC+AGG | + | chr5.1:76871039-76871058 | None:intergenic | 50.0% |
| ! | TGTCCGCCGTGTTTTCATCA+TGG | - | chr5.1:76870216-76870235 | MS.gene37988:intron | 50.0% |
| !! | AGCTTTGAGGGATAGCAGCA+TGG | - | chr5.1:76870975-76870994 | MS.gene37988:intron | 50.0% |
| !! | CAAGGAAGTGTTGGGTGACA+AGG | - | chr5.1:76870849-76870868 | MS.gene37988:intron | 50.0% |
| !! | GAAGGGTATTGTGGACTCTG+AGG | - | chr5.1:76870279-76870298 | MS.gene37988:intron | 50.0% |
| !! | GGTGCTGATGTGAGCATGAT+TGG | - | chr5.1:76869545-76869564 | MS.gene37988:CDS | 50.0% |
| ACTGGTGAAGCTCTTGGCAG+GGG | - | chr5.1:76869701-76869720 | MS.gene37988:CDS | 55.0% | |
| AGGTACCACTCCACCAAGAG+TGG | - | chr5.1:76870514-76870533 | MS.gene37988:intron | 55.0% | |
| ATCCCATCATGGAGGAGCTG+AGG | - | chr5.1:76871043-76871062 | MS.gene37988:intron | 55.0% | |
| CAACTGGTGAAGCTCTTGGC+AGG | - | chr5.1:76869699-76869718 | MS.gene37988:CDS | 55.0% | |
| CACATCAGCACCAGCAGCTA+TGG | + | chr5.1:76869537-76869556 | None:intergenic | 55.0% | |
| CATCACCACTCTTGGTGGAG+TGG | + | chr5.1:76870522-76870541 | None:intergenic | 55.0% | |
| CCCCCTTCCTTGAGAAGCTT+AGG | - | chr5.1:76870638-76870657 | MS.gene37988:intron | 55.0% | |
| CCCTGAGAATCCCATCATGG+AGG | - | chr5.1:76871035-76871054 | MS.gene37988:intron | 55.0% | |
| GCATCAGCTTCCTCCAATGG+TGG | + | chr5.1:76871255-76871274 | None:intergenic | 55.0% | |
| GGAAGAGGAGGGTAAGGTTG+AGG | - | chr5.1:76869895-76869914 | MS.gene37988:CDS | 55.0% | |
| GGAAGCTGATGCTGATGCAG+AGG | - | chr5.1:76871263-76871282 | MS.gene37988:CDS | 55.0% | |
| GTTGGACTGCCAACATGGAG+AGG | - | chr5.1:76870938-76870957 | MS.gene37988:intron | 55.0% | |
| TCTTGAGGAACGCCGTCTGA+AGG | - | chr5.1:76869766-76869785 | MS.gene37988:CDS | 55.0% | |
| TGCTGACATGCCACCATTGG+AGG | - | chr5.1:76871242-76871261 | MS.gene37988:CDS | 55.0% | |
| TGTGGGAGTCTCAAGCTGGT+GGG | - | chr5.1:76869654-76869673 | MS.gene37988:CDS | 55.0% | |
| TTGAGGGATAGCAGCATGGC+TGG | - | chr5.1:76870979-76870998 | MS.gene37988:intron | 55.0% | |
| ! | GGAAACGTGCTGATGCTGAC+AGG | - | chr5.1:76871064-76871083 | MS.gene37988:intron | 55.0% |
| GGAACGCCGTCTGAAGGACT+TGG | - | chr5.1:76869772-76869791 | MS.gene37988:CDS | 60.0% | |
| GTGTGGGAGTCTCAAGCTGG+TGG | - | chr5.1:76869653-76869672 | MS.gene37988:CDS | 60.0% | |
| TGTCGGTCAAGCCCTCGAAC+CGG | + | chr5.1:76869232-76869251 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 76868334 | 76871311 | 76868334 | ID=MS.gene37988 |
| chr5.1 | mRNA | 76868334 | 76871311 | 76868334 | ID=MS.gene37988.t1;Parent=MS.gene37988 |
| chr5.1 | exon | 76871189 | 76871311 | 76871189 | ID=MS.gene37988.t1.exon1;Parent=MS.gene37988.t1 |
| chr5.1 | CDS | 76871189 | 76871311 | 76871189 | ID=cds.MS.gene37988.t1;Parent=MS.gene37988.t1 |
| chr5.1 | exon | 76870289 | 76870430 | 76870289 | ID=MS.gene37988.t1.exon2;Parent=MS.gene37988.t1 |
| chr5.1 | CDS | 76870289 | 76870430 | 76870289 | ID=cds.MS.gene37988.t1;Parent=MS.gene37988.t1 |
| chr5.1 | exon | 76868334 | 76870168 | 76868334 | ID=MS.gene37988.t1.exon3;Parent=MS.gene37988.t1 |
| chr5.1 | CDS | 76868334 | 76870168 | 76868334 | ID=cds.MS.gene37988.t1;Parent=MS.gene37988.t1 |
| Gene Sequence |
| Protein sequence |
