Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81285.t1 | XP_004491530.1 | 97.6 | 699 | 17 | 0 | 1 | 699 | 1 | 699 | 0.00E+00 | 1244.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81285.t1 | P36181 | 93.0 | 699 | 49 | 0 | 1 | 699 | 1 | 699 | 0.0e+00 | 1198.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81285.t1 | A0A1S2XPL0 | 97.6 | 699 | 17 | 0 | 1 | 699 | 1 | 699 | 0.0e+00 | 1244.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene81285 | 0.835961 | 1.24E-56 | -1.69E-46 |
| MS.gene049166 | MS.gene81285 | 0.847781 | 9.31E-60 | -1.69E-46 |
| MS.gene049178 | MS.gene81285 | 0.808117 | 3.63E-50 | -1.69E-46 |
| MS.gene04917 | MS.gene81285 | 0.833794 | 4.34E-56 | -1.69E-46 |
| MS.gene049208 | MS.gene81285 | 0.817588 | 3.05E-52 | -1.69E-46 |
| MS.gene049685 | MS.gene81285 | 0.80124 | 9.88E-49 | -1.69E-46 |
| MS.gene049786 | MS.gene81285 | 0.808409 | 3.14E-50 | -1.69E-46 |
| MS.gene04984 | MS.gene81285 | 0.811102 | 8.28E-51 | -1.69E-46 |
| MS.gene049887 | MS.gene81285 | 0.813615 | 2.34E-51 | -1.69E-46 |
| MS.gene050114 | MS.gene81285 | 0.841682 | 4.10E-58 | -1.69E-46 |
| MS.gene050317 | MS.gene81285 | 0.845966 | 2.92E-59 | -1.69E-46 |
| MS.gene050629 | MS.gene81285 | -0.820895 | 5.39E-53 | -1.69E-46 |
| MS.gene050654 | MS.gene81285 | 0.815837 | 7.53E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene81285 | 0.838429 | 2.89E-57 | -1.69E-46 |
| MS.gene051003 | MS.gene81285 | 0.810074 | 1.38E-50 | -1.69E-46 |
| MS.gene051757 | MS.gene81285 | 0.805574 | 1.25E-49 | -1.69E-46 |
| MS.gene052335 | MS.gene81285 | 0.800997 | 1.11E-48 | -1.69E-46 |
| MS.gene052342 | MS.gene81285 | 0.80789 | 4.05E-50 | -1.69E-46 |
| MS.gene052434 | MS.gene81285 | 0.867996 | 9.06E-66 | -1.69E-46 |
| MS.gene053058 | MS.gene81285 | 0.834214 | 3.41E-56 | -1.69E-46 |
| MS.gene053109 | MS.gene81285 | 0.804573 | 2.02E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene81285 | 0.849786 | 2.59E-60 | -1.69E-46 |
| MS.gene055311 | MS.gene81285 | 0.857927 | 1.17E-62 | -1.69E-46 |
| MS.gene055313 | MS.gene81285 | 0.827792 | 1.29E-54 | -1.69E-46 |
| MS.gene055314 | MS.gene81285 | 0.836209 | 1.07E-56 | -1.69E-46 |
| MS.gene056097 | MS.gene81285 | 0.810214 | 1.29E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene81285 | 0.84239 | 2.66E-58 | -1.69E-46 |
| MS.gene056403 | MS.gene81285 | 0.801681 | 8.03E-49 | -1.69E-46 |
| MS.gene056432 | MS.gene81285 | 0.817823 | 2.70E-52 | -1.69E-46 |
| MS.gene056752 | MS.gene81285 | 0.824294 | 8.73E-54 | -1.69E-46 |
| MS.gene056787 | MS.gene81285 | 0.825735 | 3.99E-54 | -1.69E-46 |
| MS.gene056849 | MS.gene81285 | 0.831965 | 1.24E-55 | -1.69E-46 |
| MS.gene057055 | MS.gene81285 | 0.811332 | 7.38E-51 | -1.69E-46 |
| MS.gene057057 | MS.gene81285 | 0.802144 | 6.45E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene81285 | 0.803942 | 2.74E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene81285 | 0.810498 | 1.12E-50 | -1.69E-46 |
| MS.gene057721 | MS.gene81285 | 0.830983 | 2.16E-55 | -1.69E-46 |
| MS.gene058278 | MS.gene81285 | 0.817482 | 3.22E-52 | -1.69E-46 |
| MS.gene058438 | MS.gene81285 | 0.802882 | 4.54E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene81285 | 0.813122 | 3.00E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene81285 | 0.830443 | 2.93E-55 | -1.69E-46 |
| MS.gene058646 | MS.gene81285 | 0.805464 | 1.32E-49 | -1.69E-46 |
| MS.gene058654 | MS.gene81285 | 0.826359 | 2.83E-54 | -1.69E-46 |
| MS.gene058758 | MS.gene81285 | 0.858324 | 8.91E-63 | -1.69E-46 |
| MS.gene059050 | MS.gene81285 | 0.808396 | 3.16E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene81285 | 0.808082 | 3.69E-50 | -1.69E-46 |
| MS.gene059171 | MS.gene81285 | 0.808489 | 3.02E-50 | -1.69E-46 |
| MS.gene059290 | MS.gene81285 | 0.831874 | 1.30E-55 | -1.69E-46 |
| MS.gene059360 | MS.gene81285 | 0.800857 | 1.18E-48 | -1.69E-46 |
| MS.gene06010 | MS.gene81285 | 0.827456 | 1.55E-54 | -1.69E-46 |
| MS.gene06011 | MS.gene81285 | 0.832199 | 1.08E-55 | -1.69E-46 |
| MS.gene060296 | MS.gene81285 | 0.807439 | 5.05E-50 | -1.69E-46 |
| MS.gene060563 | MS.gene81285 | 0.822807 | 1.94E-53 | -1.69E-46 |
| MS.gene060702 | MS.gene81285 | 0.811498 | 6.79E-51 | -1.69E-46 |
| MS.gene060763 | MS.gene81285 | 0.801103 | 1.05E-48 | -1.69E-46 |
| MS.gene060869 | MS.gene81285 | 0.886132 | 4.46E-72 | -1.69E-46 |
| MS.gene060870 | MS.gene81285 | 0.864814 | 9.27E-65 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene81285 | MS.gene27084 | PPI |
| MS.gene81285 | MS.gene38049 | PPI |
| MS.gene81285 | MS.gene75389 | PPI |
| MS.gene81285 | MS.gene64225 | PPI |
| MS.gene81288 | MS.gene81285 | PPI |
| MS.gene81285 | MS.gene020886 | PPI |
| MS.gene81227 | MS.gene81285 | PPI |
| MS.gene81285 | MS.gene040499 | PPI |
| MS.gene58998 | MS.gene81285 | PPI |
| MS.gene81285 | MS.gene62607 | PPI |
| MS.gene81285 | MS.gene38262 | PPI |
| MS.gene81285 | MS.gene75388 | PPI |
| MS.gene37989 | MS.gene81285 | PPI |
| MS.gene81285 | MS.gene38210 | PPI |
| MS.gene81285 | MS.gene020834 | PPI |
| MS.gene81285 | MS.gene60613 | PPI |
| MS.gene81285 | MS.gene020833 | PPI |
| MS.gene81285 | MS.gene62123 | PPI |
| MS.gene81285 | MS.gene64023 | PPI |
| MS.gene81285 | MS.gene061126 | PPI |
| MS.gene24136 | MS.gene81285 | PPI |
| MS.gene81285 | MS.gene38261 | PPI |
| MS.gene37988 | MS.gene81285 | PPI |
| MS.gene81285 | MS.gene49154 | PPI |
| MS.gene81285 | MS.gene006231 | PPI |
| MS.gene81285 | MS.gene029690 | PPI |
| MS.gene81285 | MS.gene64024 | PPI |
| MS.gene81285 | MS.gene30654 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81285.t1 | MTR_5g096430 | 99.857 | 699 | 1 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1419 |
| MS.gene81285.t1 | MTR_5g096460 | 99.857 | 699 | 1 | 0 | 1 | 699 | 1 | 699 | 0.0 | 1419 |
| MS.gene81285.t1 | MTR_6g452990 | 88.160 | 701 | 79 | 3 | 1 | 699 | 1 | 699 | 0.0 | 1186 |
| MS.gene81285.t1 | MTR_1g099840 | 84.692 | 699 | 92 | 2 | 1 | 699 | 6 | 689 | 0.0 | 1146 |
| MS.gene81285.t1 | MTR_1g025430 | 48.867 | 706 | 320 | 8 | 5 | 673 | 78 | 779 | 0.0 | 642 |
| MS.gene81285.t1 | MTR_5g097320 | 45.562 | 676 | 345 | 10 | 5 | 667 | 90 | 755 | 0.0 | 577 |
| MS.gene81285.t1 | MTR_0009s0390 | 45.634 | 710 | 354 | 13 | 5 | 698 | 82 | 775 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81285.t1 | AT5G56000 | 90.714 | 700 | 63 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1205 |
| MS.gene81285.t1 | AT5G56030 | 92.286 | 700 | 52 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1196 |
| MS.gene81285.t1 | AT5G56010 | 92.000 | 700 | 54 | 2 | 1 | 699 | 1 | 699 | 0.0 | 1194 |
| MS.gene81285.t1 | AT5G56030 | 88.615 | 729 | 52 | 3 | 1 | 699 | 1 | 728 | 0.0 | 1181 |
| MS.gene81285.t1 | AT5G52640 | 85.185 | 702 | 99 | 5 | 1 | 699 | 1 | 700 | 0.0 | 1148 |
| MS.gene81285.t1 | AT4G24190 | 50.356 | 703 | 310 | 8 | 5 | 672 | 77 | 775 | 0.0 | 643 |
| MS.gene81285.t1 | AT4G24190 | 50.356 | 703 | 310 | 8 | 5 | 672 | 77 | 775 | 0.0 | 642 |
| MS.gene81285.t1 | AT2G04030 | 47.485 | 676 | 329 | 11 | 5 | 668 | 77 | 738 | 0.0 | 597 |
| MS.gene81285.t1 | AT3G07770 | 45.495 | 677 | 346 | 10 | 5 | 668 | 95 | 761 | 0.0 | 590 |
| MS.gene81285.t1 | AT3G07770 | 45.495 | 677 | 346 | 10 | 5 | 668 | 95 | 761 | 0.0 | 590 |
| MS.gene81285.t1 | AT3G07770 | 45.495 | 677 | 346 | 10 | 5 | 668 | 95 | 761 | 0.0 | 590 |
| MS.gene81285.t1 | AT2G04030 | 47.033 | 674 | 332 | 11 | 5 | 668 | 77 | 735 | 0.0 | 588 |
Find 174 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGGTCAGTTGGAGTTTA+AGG | 0.170053 | 5.2:-80907157 | MS.gene81285:CDS |
| GAGACTGCTCTTCTTACTTC+TGG | 0.243959 | 5.2:-80906148 | MS.gene81285:CDS |
| TTCTCAACCCAAAGAGAAAT+TGG | 0.256773 | 5.2:+80907450 | None:intergenic |
| TGAACAAGCAGAAGCCTATT+TGG | 0.260701 | 5.2:-80907281 | MS.gene81285:CDS |
| TTAGCTATCCAATTTCTCTT+TGG | 0.269210 | 5.2:-80907458 | MS.gene81285:CDS |
| CTTGATGAGCCCAACACTTT+TGG | 0.271765 | 5.2:-80906118 | MS.gene81285:CDS |
| TAGCTATCCAATTTCTCTTT+GGG | 0.282969 | 5.2:-80907457 | MS.gene81285:CDS |
| ACAAGAGACGTTCGCTTTCC+AGG | 0.298645 | 5.2:-80908929 | MS.gene81285:CDS |
| ACTCAAGTTGATCCTCCTTT+AGG | 0.313372 | 5.2:+80907532 | None:intergenic |
| TCCTCCATGATGGGATTCTC+AGG | 0.339757 | 5.2:+80906238 | None:intergenic |
| CAATGATTGGGAAGAGCATT+TGG | 0.340719 | 5.2:-80907199 | MS.gene81285:CDS |
| TGTTTAGTGACTGGTGAGTA+TGG | 0.358330 | 5.2:-80906358 | MS.gene81285:CDS |
| GACATACAGCTTGATGTTGT+TGG | 0.373069 | 5.2:+80907077 | None:intergenic |
| AAACGTTAGCTTACCAGCTT+TGG | 0.375649 | 5.2:+80907910 | None:intergenic |
| GTCTGGTACCAAGGAATTCA+TGG | 0.376590 | 5.2:-80907766 | MS.gene81285:CDS |
| GAGATCAAAAGGTGCTCTCT+TGG | 0.380844 | 5.2:+80907119 | None:intergenic |
| AATGACATTTACTACATTAC+CGG | 0.381181 | 5.2:-80906685 | MS.gene81285:CDS |
| AGTTCTTCCTGATGACCTTA+AGG | 0.384170 | 5.2:+80906926 | None:intergenic |
| ACAAGAGTCTCACCAATGAT+TGG | 0.384273 | 5.2:-80907212 | MS.gene81285:CDS |
| TGAGTATCTTAGCTTTGTTA+AGG | 0.384871 | 5.2:-80907013 | MS.gene81285:CDS |
| TCTGGCTTCCTCATCCAAAT+AGG | 0.390372 | 5.2:+80907267 | None:intergenic |
| ACATACAGCTTGATGTTGTT+GGG | 0.394439 | 5.2:+80907078 | None:intergenic |
| AAAGTGTTGTTGGTCTTGTC+AGG | 0.406501 | 5.2:+80907962 | None:intergenic |
| AATGATAGTCAAAGTGTTGT+TGG | 0.411318 | 5.2:+80907952 | None:intergenic |
| TCATCCTTTGTAATCTCCTC+TGG | 0.414109 | 5.2:+80907249 | None:intergenic |
| GAAGAAGGAAGAGGAGGGTA+AGG | 0.417477 | 5.2:-80907385 | MS.gene81285:CDS |
| ACTATCATTGATAGTGGCAT+TGG | 0.423433 | 5.2:-80907938 | MS.gene81285:CDS |
| GTGAGTATGATTGGACAGTT+TGG | 0.425748 | 5.2:-80907720 | MS.gene81285:CDS |
| CGAGGAAGAGAAGAAGGAAG+AGG | 0.429375 | 5.2:-80907394 | MS.gene81285:CDS |
| GGTCATGTCATCACCACTCT+TGG | 0.434025 | 5.2:+80906747 | None:intergenic |
| GGAAGAGGAGGGTAAGGTTG+AGG | 0.435286 | 5.2:-80907379 | MS.gene81285:CDS |
| CTTCTCTGTTGAGGGTCAGT+TGG | 0.437261 | 5.2:-80907166 | MS.gene81285:CDS |
| ACAAGATCCTTAAGGTCATC+AGG | 0.437555 | 5.2:-80906933 | MS.gene81285:CDS |
| GAGTATCTTAGCTTTGTTAA+GGG | 0.438963 | 5.2:-80907012 | MS.gene81285:CDS |
| CATGAAGGCACAAGCTTTGA+GGG | 0.445178 | 5.2:-80906311 | MS.gene81285:CDS |
| TTTGTGTCAAAGAGATCAAA+AGG | 0.446679 | 5.2:+80907108 | None:intergenic |
| GTTAAGCACTTCTCTGTTGA+GGG | 0.447502 | 5.2:-80907174 | MS.gene81285:CDS |
| CTAGTGTCTGCAACTAAAGA+AGG | 0.450314 | 5.2:-80906529 | MS.gene81285:CDS |
| ACTTTGACTATCATTGATAG+TGG | 0.450944 | 5.2:-80907944 | MS.gene81285:CDS |
| CCTTGAGAAGCTTAGGAAGA+AGG | 0.459680 | 5.2:-80906629 | MS.gene81285:CDS |
| CAAGAGTCTCACCAATGATT+GGG | 0.462392 | 5.2:-80907211 | MS.gene81285:CDS |
| CAAATGCTCTTCCCAATCAT+TGG | 0.463958 | 5.2:+80907200 | None:intergenic |
| TATAGCTTCCATGAATTCCT+TGG | 0.467031 | 5.2:+80907758 | None:intergenic |
| TGGTCAGCTCAAGGAATTTG+AGG | 0.468755 | 5.2:-80906560 | MS.gene81285:CDS |
| TGCTTACCTTGTTGCTGAGA+AGG | 0.468853 | 5.2:-80907682 | MS.gene81285:CDS |
| AGTAAATGACCCACCAGCTT+GGG | 0.469169 | 5.2:+80907611 | None:intergenic |
| AGATCAAAAGGTGCTCTCTT+GGG | 0.469930 | 5.2:+80907120 | None:intergenic |
| TGTTAAGCACTTCTCTGTTG+AGG | 0.472630 | 5.2:-80907175 | MS.gene81285:CDS |
| TTCCTCAGCTCCTCCATGAT+GGG | 0.474148 | 5.2:+80906229 | None:intergenic |
| AGTAGACGAGGAGAAAGAAA+AGG | 0.477035 | 5.2:-80907355 | MS.gene81285:CDS |
| TTTCTCTAAGAACTTGAAGC+TGG | 0.477075 | 5.2:-80906830 | MS.gene81285:CDS |
| GGTGCTGATGTGAGTATGAT+TGG | 0.477447 | 5.2:-80907729 | MS.gene81285:CDS |
| TTGAGGGATAGCAGCATGGC+TGG | 0.477457 | 5.2:-80906295 | MS.gene81285:CDS |
| TCATGAAGGCACAAGCTTTG+AGG | 0.479345 | 5.2:-80906312 | MS.gene81285:CDS |
| AGAATCAAGCTTGCTCTTGT+CGG | 0.482487 | 5.2:+80908012 | None:intergenic |
| TAGCTTTGTTAAGGGTATTG+TGG | 0.484688 | 5.2:-80907004 | MS.gene81285:CDS |
| CTTTGAAATTGCTGAGAACA+AGG | 0.486596 | 5.2:-80906878 | MS.gene81285:CDS |
| GGAAGAGAAGAAGGAAGAGG+AGG | 0.487208 | 5.2:-80907391 | MS.gene81285:CDS |
| CATGTCATCACCACTCTTGG+TGG | 0.488480 | 5.2:+80906750 | None:intergenic |
| ATTCTGTCCTTCCTTCATCC+TGG | 0.488551 | 5.2:+80906705 | None:intergenic |
| CTAAGCTTGCTGATTTGCTC+AGG | 0.489387 | 5.2:-80906780 | MS.gene81285:CDS |
| TCAACAGAACAAGATCCTTA+AGG | 0.489546 | 5.2:-80906941 | MS.gene81285:CDS |
| GGTGTCTAATGAATGGTCTT+TGG | 0.492991 | 5.2:-80907304 | MS.gene81285:CDS |
| ATGATTGGACAGTTTGGTGT+TGG | 0.493545 | 5.2:-80907714 | MS.gene81285:CDS |
| GGAACGCCGTCTGAAGGACT+TGG | 0.493605 | 5.2:-80907502 | MS.gene81285:CDS |
| AACAGCTTTCTTGCTTTCAC+CGG | 0.494202 | 5.2:+80906666 | None:intergenic |
| TAAAATAACTCTCATCCTAA+AGG | 0.494415 | 5.2:-80907547 | MS.gene81285:CDS |
| CTTCCTAAGCTTCTCAAGGA+AGG | 0.495109 | 5.2:+80906633 | None:intergenic |
| CAATCTTTGCAAGGTGATCA+AGG | 0.496155 | 5.2:-80906443 | MS.gene81285:CDS |
| GGCATTGGAATGACCAAAGC+TGG | 0.498686 | 5.2:-80907923 | MS.gene81285:intron |
| GGGTGACAAGGTTGAGAAAG+TGG | 0.499707 | 5.2:-80906413 | MS.gene81285:CDS |
| ATCTCTCTTGAAATGTTAAG+TGG | 0.500434 | 5.2:+80906967 | None:intergenic |
| TTCGTCATCATTGTGCTTGG+TGG | 0.500444 | 5.2:+80907650 | None:intergenic |
| CTAGGTACCATTGCTAGGTC+TGG | 0.502477 | 5.2:-80907783 | MS.gene81285:CDS |
| GAAGAGAAGAAGGAAGAGGA+GGG | 0.502813 | 5.2:-80907390 | MS.gene81285:CDS |
| GTGGGTCATTTACTGTGACC+AGG | 0.504199 | 5.2:-80907602 | MS.gene81285:CDS |
| GATACTACTGGTGAAGCTCT+TGG | 0.506627 | 5.2:-80907579 | MS.gene81285:CDS |
| TCTCCTTGCTGTTTAGTGAC+TGG | 0.506819 | 5.2:-80906367 | MS.gene81285:CDS |
| TTTCCTCAGCTCCTCCATGA+TGG | 0.507054 | 5.2:+80906228 | None:intergenic |
| CTTGAGAAGCTTAGGAAGAA+GGG | 0.508184 | 5.2:-80906628 | MS.gene81285:CDS |
| CAAGGTGATCAAGGAGGTGT+TGG | 0.509412 | 5.2:-80906434 | MS.gene81285:CDS |
| TTCCTAAGCTTCTCAAGGAA+GGG | 0.510661 | 5.2:+80906634 | None:intergenic |
| TCCTAAGCTTCTCAAGGAAG+GGG | 0.515007 | 5.2:+80906635 | None:intergenic |
| AGCTTCACCAGTAGTATCCC+TGG | 0.516220 | 5.2:+80907584 | None:intergenic |
| CTTCATGATCCTCTCCATGT+TGG | 0.521693 | 5.2:+80906327 | None:intergenic |
| TGAGGACGAGGAAGAGAAGA+AGG | 0.523115 | 5.2:-80907400 | MS.gene81285:CDS |
| TGCTGACATGCCACCATTGG+AGG | 0.530142 | 5.2:-80906032 | MS.gene81285:CDS |
| ATCCTGTTGCCAAAAGTGTT+GGG | 0.532827 | 5.2:+80906109 | None:intergenic |
| ATTCACAGGATGCTCAAGCT+TGG | 0.534491 | 5.2:-80906088 | MS.gene81285:CDS |
| TCAGCATCAGCTTCCTCCAA+TGG | 0.535356 | 5.2:+80906019 | None:intergenic |
| CATTGCTAGGTCTGGTACCA+AGG | 0.535688 | 5.2:-80907775 | MS.gene81285:CDS |
| TTAAGGAGGTGTCTAATGAA+TGG | 0.538054 | 5.2:-80907311 | MS.gene81285:CDS |
| TACTGGTGAAGCTCTTGGTA+GGG | 0.540570 | 5.2:-80907574 | MS.gene81285:CDS |
| TTCATGGAAGCTATAGCTGC+TGG | 0.543301 | 5.2:-80907750 | MS.gene81285:CDS |
| AATCCTGTTGCCAAAAGTGT+TGG | 0.544511 | 5.2:+80906108 | None:intergenic |
| TGATGCTGACATGCCACCAT+TGG | 0.545200 | 5.2:-80906035 | MS.gene81285:CDS |
| TTCTCTAAGAACTTGAAGCT+GGG | 0.547307 | 5.2:-80906829 | MS.gene81285:CDS |
| GGTCAGCTCAAGGAATTTGA+GGG | 0.548038 | 5.2:-80906559 | MS.gene81285:CDS |
| GTGTGGGAGTCCCAAGCTGG+TGG | 0.550695 | 5.2:-80907621 | MS.gene81285:CDS |
| CTGTTCGTCATCATTGTGCT+TGG | 0.552015 | 5.2:+80907647 | None:intergenic |
| TTAACAAAGCTAAGATACTC+AGG | 0.554583 | 5.2:+80907015 | None:intergenic |
| ATAATGTGAATGAACAGCTC+TGG | 0.554976 | 5.2:+80907986 | None:intergenic |
| TAAGGTCATCAGGAAGAACT+TGG | 0.555403 | 5.2:-80906923 | MS.gene81285:CDS |
| CCTTCTTCCTAAGCTTCTCA+AGG | 0.555668 | 5.2:+80906629 | None:intergenic |
| CAGTAAATGACCCACCAGCT+TGG | 0.561388 | 5.2:+80907610 | None:intergenic |
| CTACTGGTGAAGCTCTTGGT+AGG | 0.561530 | 5.2:-80907575 | MS.gene81285:CDS |
| GGAAACGTGCTGATGCTGAC+AGG | 0.562915 | 5.2:-80906210 | MS.gene81285:CDS |
| TAGTGACTGGTGAGTATGGT+TGG | 0.563826 | 5.2:-80906354 | MS.gene81285:CDS |
| GGACTATGTTACCAGGATGA+AGG | 0.567325 | 5.2:-80906716 | MS.gene81285:CDS |
| GATTTCTGACGATGAGGACG+AGG | 0.568643 | 5.2:-80907412 | MS.gene81285:CDS |
| TCTTGAGGAACGCCGTCTGA+AGG | 0.568654 | 5.2:-80907508 | MS.gene81285:CDS |
| CAAAAGTGTTGGGCTCATCA+AGG | 0.569013 | 5.2:+80906119 | None:intergenic |
| AGAGGGAAGCAAGATGGAAG+AGG | 0.571151 | 5.2:-80905993 | MS.gene81285:CDS |
| CAAGGAGGTGTTGGGTGACA+AGG | 0.575150 | 5.2:-80906425 | MS.gene81285:CDS |
| GGTAACATAGTCCTTGAGGC+TGG | 0.577318 | 5.2:+80906726 | None:intergenic |
| GGGATATGAAGTGATTTACA+TGG | 0.578493 | 5.2:-80906608 | MS.gene81285:CDS |
| CCTCCATGATGGGATTCTCA+GGG | 0.578771 | 5.2:+80906239 | None:intergenic |
| AGCAAGGAGAATCGACAACT+CGG | 0.578868 | 5.2:+80906380 | None:intergenic |
| ACAACCTAGGTACCATTGCT+AGG | 0.579010 | 5.2:-80907788 | MS.gene81285:CDS |
| TGTCGGTCAAGCCCTCAAAA+CGG | 0.582332 | 5.2:+80908029 | None:intergenic |
| GCAGATTTGGTGAACAACCT+AGG | 0.583680 | 5.2:-80907801 | MS.gene81285:intron |
| AGCAGAAGCCTATTTGGATG+AGG | 0.584932 | 5.2:-80907275 | MS.gene81285:CDS |
| ACTGGTGAAGCTCTTGGTAG+GGG | 0.586981 | 5.2:-80907573 | MS.gene81285:CDS |
| GAAGTTGATTGATCTCAGCC+TGG | 0.587212 | 5.2:+80908911 | None:intergenic |
| CAGACCTAGCAATGGTACCT+AGG | 0.590700 | 5.2:+80907784 | None:intergenic |
| CATCACCACTCTTGGTGGAG+TGG | 0.592725 | 5.2:+80906755 | None:intergenic |
| TAAGGTTGAGGAAGTAGACG+AGG | 0.592744 | 5.2:-80907367 | MS.gene81285:CDS |
| TGGGTCATTTACTGTGACCA+GGG | 0.596558 | 5.2:-80907601 | MS.gene81285:CDS |
| CAACCCTGAGAATCCCATCA+TGG | 0.597286 | 5.2:-80906242 | MS.gene81285:CDS |
| ATCCCATCATGGAGGAGCTG+AGG | 0.597622 | 5.2:-80906231 | MS.gene81285:CDS |
| GTATGCTGTTGGTCAGCTCA+AGG | 0.599835 | 5.2:-80906569 | MS.gene81285:CDS |
| GAAGTTCGACAATCTTTGCA+AGG | 0.601872 | 5.2:-80906452 | MS.gene81285:CDS |
| GAAGCTGATGCTGATGCAGA+GGG | 0.602230 | 5.2:-80906010 | MS.gene81285:CDS |
| TGATGCAGAGGGAAGCAAGA+TGG | 0.604134 | 5.2:-80905999 | MS.gene81285:CDS |
| CAGGAATGACAAATCTGTGA+AGG | 0.605359 | 5.2:-80906191 | MS.gene81285:CDS |
| TCCTGGTAACATAGTCCTTG+AGG | 0.608835 | 5.2:+80906722 | None:intergenic |
| TAGTGTCTGCAACTAAAGAA+GGG | 0.609080 | 5.2:-80906528 | MS.gene81285:CDS |
| GCCTCAAGGACTATGTTACC+AGG | 0.610223 | 5.2:-80906723 | MS.gene81285:CDS |
| CATGTCAAGCAAGAAGACAA+TGG | 0.611061 | 5.2:-80906269 | MS.gene81285:CDS |
| CAATAACCTTCTCAGCAACA+AGG | 0.612540 | 5.2:+80907676 | None:intergenic |
| TATGTGTGGGAGTCCCAAGC+TGG | 0.615041 | 5.2:-80907624 | MS.gene81285:CDS |
| AGCTTTGAGGGATAGCAGCA+TGG | 0.615872 | 5.2:-80906299 | MS.gene81285:CDS |
| AATAACTCTCATCCTAAAGG+AGG | 0.618093 | 5.2:-80907544 | MS.gene81285:CDS |
| GCTTGGTCTTAGCATTGATG+AGG | 0.619021 | 5.2:-80906071 | MS.gene81285:CDS |
| CAACATGGAGAGGATCATGA+AGG | 0.620851 | 5.2:-80906326 | MS.gene81285:CDS |
| GTTGAAACTTGACGAGAGTG+AGG | 0.621123 | 5.2:-80906506 | MS.gene81285:CDS |
| ACTGTGACCAGGGATACTAC+TGG | 0.626949 | 5.2:-80907591 | MS.gene81285:CDS |
| GGATCAACTTGAGTATCTTG+AGG | 0.629396 | 5.2:-80907523 | MS.gene81285:CDS |
| TAAGGGTATTGTGGACTCTG+AGG | 0.633755 | 5.2:-80906995 | MS.gene81285:CDS |
| AGGTACCACTCCACCAAGAG+TGG | 0.636721 | 5.2:-80906760 | MS.gene81285:CDS |
| GCAATTGATGAGTATGCTGT+TGG | 0.641021 | 5.2:-80906580 | MS.gene81285:CDS |
| GTATGGTTGGACTGCCAACA+TGG | 0.641083 | 5.2:-80906341 | MS.gene81285:CDS |
| GAAAGAGATTTCTGACGATG+AGG | 0.644456 | 5.2:-80907418 | MS.gene81285:CDS |
| TCTTAACCAAGTCCTTCAGA+CGG | 0.644789 | 5.2:+80907496 | None:intergenic |
| TGTGGGAGTCCCAAGCTGGT+GGG | 0.646830 | 5.2:-80907620 | MS.gene81285:CDS |
| GCATCAGCTTCCTCCAATGG+TGG | 0.651686 | 5.2:+80906022 | None:intergenic |
| AAGGTGATCAAGGAGGTGTT+GGG | 0.654251 | 5.2:-80906433 | MS.gene81285:CDS |
| TGATGACATGACCAGCCTCA+AGG | 0.657377 | 5.2:-80906737 | MS.gene81285:CDS |
| CCTAAGCTTCTCAAGGAAGG+GGG | 0.664638 | 5.2:+80906636 | None:intergenic |
| GTTGGACTGCCAACATGGAG+AGG | 0.668192 | 5.2:-80906336 | MS.gene81285:CDS |
| TATGTTACCAGGATGAAGGA+AGG | 0.670222 | 5.2:-80906712 | MS.gene81285:CDS |
| GGAAGCTGATGCTGATGCAG+AGG | 0.671926 | 5.2:-80906011 | MS.gene81285:CDS |
| AGTTGTCCATGATGAAAACA+CGG | 0.681053 | 5.2:+80907052 | None:intergenic |
| TCACCAGTCACTAAACAGCA+AGG | 0.682332 | 5.2:+80906364 | None:intergenic |
| GAAGCCAGAGGAGATTACAA+AGG | 0.683556 | 5.2:-80907253 | MS.gene81285:CDS |
| CTTGAAGCTGGGTATCCATG+AGG | 0.697436 | 5.2:-80906818 | MS.gene81285:CDS |
| ATGATGACGAACAGTATGTG+TGG | 0.698166 | 5.2:-80907638 | MS.gene81285:CDS |
| CTTGGTACCAGACCTAGCAA+TGG | 0.700707 | 5.2:+80907776 | None:intergenic |
| TTTCATCATGGACAACTGTG+AGG | 0.702798 | 5.2:-80907046 | MS.gene81285:CDS |
| CCCTGAGAATCCCATCATGG+AGG | 0.716906 | 5.2:-80906239 | MS.gene81285:CDS |
| TATTTGGATGAGGAAGCCAG+AGG | 0.740409 | 5.2:-80907265 | MS.gene81285:CDS |
| TGATGACGAACAGTATGTGT+GGG | 0.740423 | 5.2:-80907637 | MS.gene81285:CDS |
| TCTTTGCAAGGTGATCAAGG+AGG | 0.803604 | 5.2:-80906440 | MS.gene81285:CDS |
| TGTCCATGATGAAAACACGG+CGG | 0.827708 | 5.2:+80907055 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATTCAATTTCAATTT+AGG | + | chr5.2:80906499-80906518 | None:intergenic | 10.0% |
| !! | ACTTTCATTCATATAATTAA+AGG | + | chr5.2:80906657-80906676 | None:intergenic | 15.0% |
| !! | ATGAATGATATTGATATAAT+CGG | - | chr5.2:80906599-80906618 | MS.gene81285:CDS | 15.0% |
| !! | TAATTGATTATATACTCTTA+GGG | - | chr5.2:80906248-80906267 | MS.gene81285:CDS | 15.0% |
| !! | TTAATTGATTATATACTCTT+AGG | - | chr5.2:80906247-80906266 | MS.gene81285:CDS | 15.0% |
| !!! | AAATTGAATTTTAATTAGTC+CGG | - | chr5.2:80906505-80906524 | MS.gene81285:CDS | 15.0% |
| !!! | GGATTATTTTTTCAATTTTA+GGG | - | chr5.2:80906218-80906237 | MS.gene81285:CDS | 15.0% |
| !!! | TCTAATACTTTGAAATATTA+GGG | - | chr5.2:80906764-80906783 | MS.gene81285:CDS | 15.0% |
| !!! | TGGATTATTTTTTCAATTTT+AGG | - | chr5.2:80906217-80906236 | MS.gene81285:CDS | 15.0% |
| !! | AAAAAATTGATCACGTAATA+AGG | + | chr5.2:80906548-80906567 | None:intergenic | 20.0% |
| !!! | GTCTAATACTTTGAAATATT+AGG | - | chr5.2:80906763-80906782 | MS.gene81285:CDS | 20.0% |
| !!! | TCTTTTGTTATCGTTTTTAT+TGG | - | chr5.2:80906197-80906216 | MS.gene81285:CDS | 20.0% |
| ! | AATGACATTTACTACATTAC+CGG | - | chr5.2:80908237-80908256 | MS.gene81285:intron | 25.0% |
| ! | ACATGACTAAAAAATCATCA+CGG | + | chr5.2:80906347-80906366 | None:intergenic | 25.0% |
| ! | ATTGTGATGAATGTTCTATA+CGG | - | chr5.2:80906398-80906417 | MS.gene81285:CDS | 25.0% |
| ! | GAAGAAAAAGAAGAAGATTA+AGG | - | chr5.2:80907594-80907613 | MS.gene81285:CDS | 25.0% |
| ! | TAAAATAACTCTCATCCTAA+AGG | - | chr5.2:80907375-80907394 | MS.gene81285:CDS | 25.0% |
| !! | ATTATATACTCTTAGGGTTT+TGG | - | chr5.2:80906254-80906273 | MS.gene81285:CDS | 25.0% |
| !!! | ATACTTTGAAATATTAGGGT+TGG | - | chr5.2:80906768-80906787 | MS.gene81285:CDS | 25.0% |
| !!! | ATGATTTTTTAGTCATGTTC+AGG | - | chr5.2:80906349-80906368 | MS.gene81285:CDS | 25.0% |
| !!! | CAATACTTTTTACAGTAACA+AGG | - | chr5.2:80906047-80906066 | MS.gene81285:CDS | 25.0% |
| !!! | TACTTTGAAATATTAGGGTT+GGG | - | chr5.2:80906769-80906788 | MS.gene81285:CDS | 25.0% |
| !!! | TGTTTTTATGAGTCAGAAAT+TGG | - | chr5.2:80907034-80907053 | MS.gene81285:CDS | 25.0% |
| AACAACAACAACAACAACAA+CGG | + | chr5.2:80906315-80906334 | None:intergenic | 30.0% | |
| ACTTTGACTATCATTGATAG+TGG | - | chr5.2:80906978-80906997 | MS.gene81285:CDS | 30.0% | |
| ATCTCTCTTGAAATGTTAAG+TGG | + | chr5.2:80907958-80907977 | None:intergenic | 30.0% | |
| GAAAAAGAAGAAGATTAAGG+AGG | - | chr5.2:80907597-80907616 | MS.gene81285:CDS | 30.0% | |
| TAGCTATCCAATTTCTCTTT+GGG | - | chr5.2:80907465-80907484 | MS.gene81285:CDS | 30.0% | |
| TATTGTTCTGATTCTTGTGT+TGG | - | chr5.2:80906841-80906860 | MS.gene81285:CDS | 30.0% | |
| TGAGGATGAAAAGAAAAAGA+TGG | - | chr5.2:80908434-80908453 | MS.gene81285:intron | 30.0% | |
| TTAACAAAGCTAAGATACTC+AGG | + | chr5.2:80907910-80907929 | None:intergenic | 30.0% | |
| TTAGCTATCCAATTTCTCTT+TGG | - | chr5.2:80907464-80907483 | MS.gene81285:CDS | 30.0% | |
| TTTGTGTCAAAGAGATCAAA+AGG | + | chr5.2:80907817-80907836 | None:intergenic | 30.0% | |
| ! | AAATATTAGGGTTGGGTTTT+AGG | - | chr5.2:80906776-80906795 | MS.gene81285:CDS | 30.0% |
| ! | GCATGATGATTTTATTGTTG+TGG | - | chr5.2:80906811-80906830 | MS.gene81285:CDS | 30.0% |
| ! | TCTGTTTTATGTTGCAGATT+TGG | - | chr5.2:80907108-80907127 | MS.gene81285:CDS | 30.0% |
| !! | AATGATAGTCAAAGTGTTGT+TGG | + | chr5.2:80906973-80906992 | None:intergenic | 30.0% |
| !! | AGACTACAACAAGTTTTATG+AGG | - | chr5.2:80908068-80908087 | MS.gene81285:intron | 30.0% |
| !! | ATCGGCACTTTAATTTTTGA+AGG | - | chr5.2:80906617-80906636 | MS.gene81285:CDS | 30.0% |
| !! | GAGTATCTTAGCTTTGTTAA+GGG | - | chr5.2:80907910-80907929 | MS.gene81285:intron | 30.0% |
| !! | TGAGTATCTTAGCTTTGTTA+AGG | - | chr5.2:80907909-80907928 | MS.gene81285:intron | 30.0% |
| AATAACTCTCATCCTAAAGG+AGG | - | chr5.2:80907378-80907397 | MS.gene81285:CDS | 35.0% | |
| ACATACAGCTTGATGTTGTT+GGG | + | chr5.2:80907847-80907866 | None:intergenic | 35.0% | |
| AGTTGTCCATGATGAAAACA+CGG | + | chr5.2:80907873-80907892 | None:intergenic | 35.0% | |
| ATAATGTGAATGAACAGCTC+TGG | + | chr5.2:80906939-80906958 | None:intergenic | 35.0% | |
| GAAAAAGATGGAAGAACAGA+AGG | - | chr5.2:80908446-80908465 | MS.gene81285:intron | 35.0% | |
| GAAGAAGAAGAAGCTTACAT+CGG | + | chr5.2:80906106-80906125 | None:intergenic | 35.0% | |
| GGATTGATATCAATACAAGC+CGG | + | chr5.2:80906527-80906546 | None:intergenic | 35.0% | |
| GGGATATGAAGTGATTTACA+TGG | - | chr5.2:80908314-80908333 | MS.gene81285:intron | 35.0% | |
| TAGTGTCTGCAACTAAAGAA+GGG | - | chr5.2:80908394-80908413 | MS.gene81285:intron | 35.0% | |
| TATAGCTTCCATGAATTCCT+TGG | + | chr5.2:80907167-80907186 | None:intergenic | 35.0% | |
| TCAACAGAACAAGATCCTTA+AGG | - | chr5.2:80907981-80908000 | MS.gene81285:CDS | 35.0% | |
| TTCTCAACCCAAAGAGAAAT+TGG | + | chr5.2:80907475-80907494 | None:intergenic | 35.0% | |
| ! | TTCTCTAAGAACTTGAAGCT+GGG | - | chr5.2:80908093-80908112 | MS.gene81285:intron | 35.0% |
| ! | TTGGATAAGATCCGTTTTGA+GGG | - | chr5.2:80906882-80906901 | MS.gene81285:CDS | 35.0% |
| ! | TTTCTCTAAGAACTTGAAGC+TGG | - | chr5.2:80908092-80908111 | MS.gene81285:intron | 35.0% |
| ! | TTTGGATAAGATCCGTTTTG+AGG | - | chr5.2:80906881-80906900 | MS.gene81285:CDS | 35.0% |
| !! | ACTATCATTGATAGTGGCAT+TGG | - | chr5.2:80906984-80907003 | MS.gene81285:CDS | 35.0% |
| !! | CTTTGAAATTGCTGAGAACA+AGG | - | chr5.2:80908044-80908063 | MS.gene81285:CDS | 35.0% |
| !! | TAGCTTTGTTAAGGGTATTG+TGG | - | chr5.2:80907918-80907937 | MS.gene81285:intron | 35.0% |
| !! | TATACTCTTAGGGTTTTGGT+TGG | - | chr5.2:80906258-80906277 | MS.gene81285:CDS | 35.0% |
| !! | TTAAGGAGGTGTCTAATGAA+TGG | - | chr5.2:80907611-80907630 | MS.gene81285:CDS | 35.0% |
| !!! | TCTTGTTTTGAGAATCCTCA+TGG | + | chr5.2:80908122-80908141 | None:intergenic | 35.0% |
| AACAGCTTTCTTGCTTTCAC+CGG | + | chr5.2:80908259-80908278 | None:intergenic | 40.0% | |
| ACAAGAGTCTCACCAATGAT+TGG | - | chr5.2:80907710-80907729 | MS.gene81285:CDS | 40.0% | |
| ACAAGATCCTTAAGGTCATC+AGG | - | chr5.2:80907989-80908008 | MS.gene81285:CDS | 40.0% | |
| AGTAGACGAGGAGAAAGAAA+AGG | - | chr5.2:80907567-80907586 | MS.gene81285:CDS | 40.0% | |
| AGTTCTTCCTGATGACCTTA+AGG | + | chr5.2:80907999-80908018 | None:intergenic | 40.0% | |
| CAAATGCTCTTCCCAATCAT+TGG | + | chr5.2:80907725-80907744 | None:intergenic | 40.0% | |
| CAAGAGTCTCACCAATGATT+GGG | - | chr5.2:80907711-80907730 | MS.gene81285:CDS | 40.0% | |
| CAATAACCTTCTCAGCAACA+AGG | + | chr5.2:80907249-80907268 | None:intergenic | 40.0% | |
| CAATCTTTGCAAGGTGATCA+AGG | - | chr5.2:80908479-80908498 | MS.gene81285:intron | 40.0% | |
| CAGGAATGACAAATCTGTGA+AGG | - | chr5.2:80908731-80908750 | MS.gene81285:intron | 40.0% | |
| CATGTCAAGCAAGAAGACAA+TGG | - | chr5.2:80908653-80908672 | MS.gene81285:intron | 40.0% | |
| CTAGTGTCTGCAACTAAAGA+AGG | - | chr5.2:80908393-80908412 | MS.gene81285:intron | 40.0% | |
| CTTGAGAAGCTTAGGAAGAA+GGG | - | chr5.2:80908294-80908313 | MS.gene81285:intron | 40.0% | |
| GAAAGAGATTTCTGACGATG+AGG | - | chr5.2:80907504-80907523 | MS.gene81285:CDS | 40.0% | |
| GAAGTTCGACAATCTTTGCA+AGG | - | chr5.2:80908470-80908489 | MS.gene81285:intron | 40.0% | |
| GAATGTTGTGTTGTAGGCTT+TGG | - | chr5.2:80906863-80906882 | MS.gene81285:CDS | 40.0% | |
| GACATACAGCTTGATGTTGT+TGG | + | chr5.2:80907848-80907867 | None:intergenic | 40.0% | |
| GCAATTGATGAGTATGCTGT+TGG | - | chr5.2:80908342-80908361 | MS.gene81285:intron | 40.0% | |
| GGATCAACTTGAGTATCTTG+AGG | - | chr5.2:80907399-80907418 | MS.gene81285:CDS | 40.0% | |
| GGTGTCTAATGAATGGTCTT+TGG | - | chr5.2:80907618-80907637 | MS.gene81285:CDS | 40.0% | |
| GTGAGTATGATTGGACAGTT+TGG | - | chr5.2:80907202-80907221 | MS.gene81285:CDS | 40.0% | |
| GTGTTGGAATGTTGTGTTGT+AGG | - | chr5.2:80906857-80906876 | MS.gene81285:CDS | 40.0% | |
| GTTAAGCACTTCTCTGTTGA+GGG | - | chr5.2:80907748-80907767 | MS.gene81285:CDS | 40.0% | |
| TAAGGTCATCAGGAAGAACT+TGG | - | chr5.2:80907999-80908018 | MS.gene81285:CDS | 40.0% | |
| TATGTTACCAGGATGAAGGA+AGG | - | chr5.2:80908210-80908229 | MS.gene81285:intron | 40.0% | |
| TCATCCTTTGTAATCTCCTC+TGG | + | chr5.2:80907676-80907695 | None:intergenic | 40.0% | |
| TCTTAACCAAGTCCTTCAGA+CGG | + | chr5.2:80907429-80907448 | None:intergenic | 40.0% | |
| TGAACAAGCAGAAGCCTATT+TGG | - | chr5.2:80907641-80907660 | MS.gene81285:CDS | 40.0% | |
| TGTTAAGCACTTCTCTGTTG+AGG | - | chr5.2:80907747-80907766 | MS.gene81285:CDS | 40.0% | |
| TGTTTAGTGACTGGTGAGTA+TGG | - | chr5.2:80908564-80908583 | MS.gene81285:intron | 40.0% | |
| TTCCTAAGCTTCTCAAGGAA+GGG | + | chr5.2:80908291-80908310 | None:intergenic | 40.0% | |
| TTTCATCATGGACAACTGTG+AGG | - | chr5.2:80907876-80907895 | MS.gene81285:intron | 40.0% | |
| ! | AAACGTTAGCTTACCAGCTT+TGG | + | chr5.2:80907015-80907034 | None:intergenic | 40.0% |
| ! | AATCCTGTTGCCAAAAGTGT+TGG | + | chr5.2:80908817-80908836 | None:intergenic | 40.0% |
| ! | AGAATCAAGCTTGCTCTTGT+CGG | + | chr5.2:80906913-80906932 | None:intergenic | 40.0% |
| ! | ATGATGACGAACAGTATGTG+TGG | - | chr5.2:80907284-80907303 | MS.gene81285:CDS | 40.0% |
| ! | TGATGACGAACAGTATGTGT+GGG | - | chr5.2:80907285-80907304 | MS.gene81285:CDS | 40.0% |
| !! | AAAGTGTTGTTGGTCTTGTC+AGG | + | chr5.2:80906963-80906982 | None:intergenic | 40.0% |
| !! | ACTCAAGTTGATCCTCCTTT+AGG | + | chr5.2:80907393-80907412 | None:intergenic | 40.0% |
| !! | AGATCAAAAGGTGCTCTCTT+GGG | + | chr5.2:80907805-80907824 | None:intergenic | 40.0% |
| !! | ATCCTGTTGCCAAAAGTGTT+GGG | + | chr5.2:80908816-80908835 | None:intergenic | 40.0% |
| !! | ATGATTGGACAGTTTGGTGT+TGG | - | chr5.2:80907208-80907227 | MS.gene81285:CDS | 40.0% |
| !! | CAATGATTGGGAAGAGCATT+TGG | - | chr5.2:80907723-80907742 | MS.gene81285:CDS | 40.0% |
| ACAACCTAGGTACCATTGCT+AGG | - | chr5.2:80907134-80907153 | MS.gene81285:CDS | 45.0% | |
| AGCAAGGAGAATCGACAACT+CGG | + | chr5.2:80908545-80908564 | None:intergenic | 45.0% | |
| AGCAGAAGCCTATTTGGATG+AGG | - | chr5.2:80907647-80907666 | MS.gene81285:CDS | 45.0% | |
| AGTAAATGACCCACCAGCTT+GGG | + | chr5.2:80907314-80907333 | None:intergenic | 45.0% | |
| ATTCACAGGATGCTCAAGCT+TGG | - | chr5.2:80908834-80908853 | MS.gene81285:intron | 45.0% | |
| ATTCTGTCCTTCCTTCATCC+TGG | + | chr5.2:80908220-80908239 | None:intergenic | 45.0% | |
| CAACATGGAGAGGATCATGA+AGG | - | chr5.2:80908596-80908615 | MS.gene81285:intron | 45.0% | |
| CCTTCTTCCTAAGCTTCTCA+AGG | + | chr5.2:80908296-80908315 | None:intergenic | 45.0% | |
| CCTTGAGAAGCTTAGGAAGA+AGG | - | chr5.2:80908293-80908312 | MS.gene81285:intron | 45.0% | |
| CTGTTCGTCATCATTGTGCT+TGG | + | chr5.2:80907278-80907297 | None:intergenic | 45.0% | |
| CTTCATGATCCTCTCCATGT+TGG | + | chr5.2:80908598-80908617 | None:intergenic | 45.0% | |
| CTTCCTAAGCTTCTCAAGGA+AGG | + | chr5.2:80908292-80908311 | None:intergenic | 45.0% | |
| GAAGAGAAGAAGGAAGAGGA+GGG | - | chr5.2:80907532-80907551 | MS.gene81285:CDS | 45.0% | |
| GAAGCCAGAGGAGATTACAA+AGG | - | chr5.2:80907669-80907688 | MS.gene81285:CDS | 45.0% | |
| GAGACTGCTCTTCTTACTTC+TGG | - | chr5.2:80908774-80908793 | MS.gene81285:intron | 45.0% | |
| GATACTACTGGTGAAGCTCT+TGG | - | chr5.2:80907343-80907362 | MS.gene81285:CDS | 45.0% | |
| GGACTATGTTACCAGGATGA+AGG | - | chr5.2:80908206-80908225 | MS.gene81285:intron | 45.0% | |
| GGTCAGCTCAAGGAATTTGA+GGG | - | chr5.2:80908363-80908382 | MS.gene81285:intron | 45.0% | |
| GTCTGGTACCAAGGAATTCA+TGG | - | chr5.2:80907156-80907175 | MS.gene81285:CDS | 45.0% | |
| GTTGAAACTTGACGAGAGTG+AGG | - | chr5.2:80908416-80908435 | MS.gene81285:intron | 45.0% | |
| TAAGGTTGAGGAAGTAGACG+AGG | - | chr5.2:80907555-80907574 | MS.gene81285:CDS | 45.0% | |
| TACTGGTGAAGCTCTTGGTA+GGG | - | chr5.2:80907348-80907367 | MS.gene81285:CDS | 45.0% | |
| TAGTGACTGGTGAGTATGGT+TGG | - | chr5.2:80908568-80908587 | MS.gene81285:intron | 45.0% | |
| TATTTGGATGAGGAAGCCAG+AGG | - | chr5.2:80907657-80907676 | MS.gene81285:CDS | 45.0% | |
| TCACCAGTCACTAAACAGCA+AGG | + | chr5.2:80908561-80908580 | None:intergenic | 45.0% | |
| TCCTAAGCTTCTCAAGGAAG+GGG | + | chr5.2:80908290-80908309 | None:intergenic | 45.0% | |
| TCCTGGTAACATAGTCCTTG+AGG | + | chr5.2:80908203-80908222 | None:intergenic | 45.0% | |
| TCTTTGCAAGGTGATCAAGG+AGG | - | chr5.2:80908482-80908501 | MS.gene81285:intron | 45.0% | |
| TGAGGGTCAGTTGGAGTTTA+AGG | - | chr5.2:80907765-80907784 | MS.gene81285:CDS | 45.0% | |
| TGCTTACCTTGTTGCTGAGA+AGG | - | chr5.2:80907240-80907259 | MS.gene81285:CDS | 45.0% | |
| TGGGTCATTTACTGTGACCA+GGG | - | chr5.2:80907321-80907340 | MS.gene81285:CDS | 45.0% | |
| TGGTCAGCTCAAGGAATTTG+AGG | - | chr5.2:80908362-80908381 | MS.gene81285:intron | 45.0% | |
| TGTCCATGATGAAAACACGG+CGG | + | chr5.2:80907870-80907889 | None:intergenic | 45.0% | |
| TTCATGGAAGCTATAGCTGC+TGG | - | chr5.2:80907172-80907191 | MS.gene81285:CDS | 45.0% | |
| TTCGTCATCATTGTGCTTGG+TGG | + | chr5.2:80907275-80907294 | None:intergenic | 45.0% | |
| ! | CATGAAGGCACAAGCTTTGA+GGG | - | chr5.2:80908611-80908630 | MS.gene81285:intron | 45.0% |
| ! | CTTGATGAGCCCAACACTTT+TGG | - | chr5.2:80908804-80908823 | MS.gene81285:intron | 45.0% |
| ! | CTTTTGGCAACAGGATTCAC+AGG | - | chr5.2:80908820-80908839 | MS.gene81285:intron | 45.0% |
| ! | GAAGTTGATTGATCTCAGCC+TGG | + | chr5.2:80906014-80906033 | None:intergenic | 45.0% |
| ! | TCATGAAGGCACAAGCTTTG+AGG | - | chr5.2:80908610-80908629 | MS.gene81285:intron | 45.0% |
| ! | TCTGGCTTCCTCATCCAAAT+AGG | + | chr5.2:80907658-80907677 | None:intergenic | 45.0% |
| !! | AAGGTGATCAAGGAGGTGTT+GGG | - | chr5.2:80908489-80908508 | MS.gene81285:intron | 45.0% |
| !! | CAAAAGTGTTGGGCTCATCA+AGG | + | chr5.2:80908806-80908825 | None:intergenic | 45.0% |
| !! | CTAAGCTTGCTGATTTGCTC+AGG | - | chr5.2:80908142-80908161 | MS.gene81285:intron | 45.0% |
| !! | GAGATCAAAAGGTGCTCTCT+TGG | + | chr5.2:80907806-80907825 | None:intergenic | 45.0% |
| !! | GCAGATTTGGTGAACAACCT+AGG | - | chr5.2:80907121-80907140 | MS.gene81285:CDS | 45.0% |
| !! | GCTTGGTCTTAGCATTGATG+AGG | - | chr5.2:80908851-80908870 | MS.gene81285:CDS | 45.0% |
| !! | GGTGCTGATGTGAGTATGAT+TGG | - | chr5.2:80907193-80907212 | MS.gene81285:CDS | 45.0% |
| !! | TAAGGGTATTGTGGACTCTG+AGG | - | chr5.2:80907927-80907946 | MS.gene81285:CDS | 45.0% |
| !! | TCTCCTTGCTGTTTAGTGAC+TGG | - | chr5.2:80908555-80908574 | MS.gene81285:intron | 45.0% |
| !! | TTTGGTTGGTGGCGTTGTTT+AGG | - | chr5.2:80906272-80906291 | MS.gene81285:CDS | 45.0% |
| !!! | ACTCTTAGGGTTTTGGTTGG+TGG | - | chr5.2:80906261-80906280 | MS.gene81285:CDS | 45.0% |
| !!! | TTTTATTTTTTTGTTTATTA+GGG | - | chr5.2:80906131-80906150 | MS.gene81285:CDS | 5.0% |
| !!! | TTTTTATTTTTTTGTTTATT+AGG | - | chr5.2:80906130-80906149 | MS.gene81285:CDS | 5.0% |
| ACAAGAGACGTTCGCTTTCC+AGG | - | chr5.2:80905993-80906012 | MS.gene81285:CDS | 50.0% | |
| ACTGGTGAAGCTCTTGGTAG+GGG | - | chr5.2:80907349-80907368 | MS.gene81285:CDS | 50.0% | |
| ACTGTGACCAGGGATACTAC+TGG | - | chr5.2:80907331-80907350 | MS.gene81285:CDS | 50.0% | |
| AGAGGGAAGCAAGATGGAAG+AGG | - | chr5.2:80908929-80908948 | MS.gene81285:CDS | 50.0% | |
| AGCTTCACCAGTAGTATCCC+TGG | + | chr5.2:80907341-80907360 | None:intergenic | 50.0% | |
| CAACCCTGAGAATCCCATCA+TGG | - | chr5.2:80908680-80908699 | MS.gene81285:intron | 50.0% | |
| CAGACCTAGCAATGGTACCT+AGG | + | chr5.2:80907141-80907160 | None:intergenic | 50.0% | |
| CAGTAAATGACCCACCAGCT+TGG | + | chr5.2:80907315-80907334 | None:intergenic | 50.0% | |
| CATGTCATCACCACTCTTGG+TGG | + | chr5.2:80908175-80908194 | None:intergenic | 50.0% | |
| CATTGCTAGGTCTGGTACCA+AGG | - | chr5.2:80907147-80907166 | MS.gene81285:CDS | 50.0% | |
| CCTAAGCTTCTCAAGGAAGG+GGG | + | chr5.2:80908289-80908308 | None:intergenic | 50.0% | |
| CGAGGAAGAGAAGAAGGAAG+AGG | - | chr5.2:80907528-80907547 | MS.gene81285:CDS | 50.0% | |
| CTACTGGTGAAGCTCTTGGT+AGG | - | chr5.2:80907347-80907366 | MS.gene81285:CDS | 50.0% | |
| CTAGGTACCATTGCTAGGTC+TGG | - | chr5.2:80907139-80907158 | MS.gene81285:CDS | 50.0% | |
| CTTCTCTGTTGAGGGTCAGT+TGG | - | chr5.2:80907756-80907775 | MS.gene81285:CDS | 50.0% | |
| CTTGAAGCTGGGTATCCATG+AGG | - | chr5.2:80908104-80908123 | MS.gene81285:intron | 50.0% | |
| CTTGGTACCAGACCTAGCAA+TGG | + | chr5.2:80907149-80907168 | None:intergenic | 50.0% | |
| GAAGAAGGAAGAGGAGGGTA+AGG | - | chr5.2:80907537-80907556 | MS.gene81285:CDS | 50.0% | |
| GAAGCTGATGCTGATGCAGA+GGG | - | chr5.2:80908912-80908931 | MS.gene81285:CDS | 50.0% | |
| GATTTCTGACGATGAGGACG+AGG | - | chr5.2:80907510-80907529 | MS.gene81285:CDS | 50.0% | |
| GCCTCAAGGACTATGTTACC+AGG | - | chr5.2:80908199-80908218 | MS.gene81285:intron | 50.0% | |
| GGAAGAGAAGAAGGAAGAGG+AGG | - | chr5.2:80907531-80907550 | MS.gene81285:CDS | 50.0% | |
| GGGTGACAAGGTTGAGAAAG+TGG | - | chr5.2:80908509-80908528 | MS.gene81285:intron | 50.0% | |
| GGTAACATAGTCCTTGAGGC+TGG | + | chr5.2:80908199-80908218 | None:intergenic | 50.0% | |
| GGTCATGTCATCACCACTCT+TGG | + | chr5.2:80908178-80908197 | None:intergenic | 50.0% | |
| GTATGCTGTTGGTCAGCTCA+AGG | - | chr5.2:80908353-80908372 | MS.gene81285:intron | 50.0% | |
| GTATGGTTGGACTGCCAACA+TGG | - | chr5.2:80908581-80908600 | MS.gene81285:intron | 50.0% | |
| GTGGGTCATTTACTGTGACC+AGG | - | chr5.2:80907320-80907339 | MS.gene81285:CDS | 50.0% | |
| TCAGCATCAGCTTCCTCCAA+TGG | + | chr5.2:80908906-80908925 | None:intergenic | 50.0% | |
| TGAGGACGAGGAAGAGAAGA+AGG | - | chr5.2:80907522-80907541 | MS.gene81285:CDS | 50.0% | |
| TGATGACATGACCAGCCTCA+AGG | - | chr5.2:80908185-80908204 | MS.gene81285:intron | 50.0% | |
| TGATGCAGAGGGAAGCAAGA+TGG | - | chr5.2:80908923-80908942 | MS.gene81285:CDS | 50.0% | |
| TGATGCTGACATGCCACCAT+TGG | - | chr5.2:80908887-80908906 | MS.gene81285:CDS | 50.0% | |
| TGTCGGTCAAGCCCTCAAAA+CGG | + | chr5.2:80906896-80906915 | None:intergenic | 50.0% | |
| TTCCTCAGCTCCTCCATGAT+GGG | + | chr5.2:80908696-80908715 | None:intergenic | 50.0% | |
| TTTCCTCAGCTCCTCCATGA+TGG | + | chr5.2:80908697-80908716 | None:intergenic | 50.0% | |
| ! | AGCCCAACACTTTTGGCAAC+AGG | - | chr5.2:80908811-80908830 | MS.gene81285:intron | 50.0% |
| ! | CAAGGTGATCAAGGAGGTGT+TGG | - | chr5.2:80908488-80908507 | MS.gene81285:intron | 50.0% |
| ! | CCTCCATGATGGGATTCTCA+GGG | + | chr5.2:80908686-80908705 | None:intergenic | 50.0% |
| ! | GGCATTGGAATGACCAAAGC+TGG | - | chr5.2:80906999-80907018 | MS.gene81285:CDS | 50.0% |
| ! | TCCTCCATGATGGGATTCTC+AGG | + | chr5.2:80908687-80908706 | None:intergenic | 50.0% |
| ! | TGTCCGCCGTGTTTTCATCA+TGG | - | chr5.2:80907864-80907883 | MS.gene81285:intron | 50.0% |
| !! | AGCTTTGAGGGATAGCAGCA+TGG | - | chr5.2:80908623-80908642 | MS.gene81285:intron | 50.0% |
| AGGTACCACTCCACCAAGAG+TGG | - | chr5.2:80908162-80908181 | MS.gene81285:intron | 55.0% | |
| ATCCCATCATGGAGGAGCTG+AGG | - | chr5.2:80908691-80908710 | MS.gene81285:intron | 55.0% | |
| CATCACCACTCTTGGTGGAG+TGG | + | chr5.2:80908170-80908189 | None:intergenic | 55.0% | |
| CCCCCTTCCTTGAGAAGCTT+AGG | - | chr5.2:80908286-80908305 | MS.gene81285:intron | 55.0% | |
| CCCTGAGAATCCCATCATGG+AGG | - | chr5.2:80908683-80908702 | MS.gene81285:intron | 55.0% | |
| GCATCAGCTTCCTCCAATGG+TGG | + | chr5.2:80908903-80908922 | None:intergenic | 55.0% | |
| GGAAGAGGAGGGTAAGGTTG+AGG | - | chr5.2:80907543-80907562 | MS.gene81285:CDS | 55.0% | |
| GGAAGCTGATGCTGATGCAG+AGG | - | chr5.2:80908911-80908930 | MS.gene81285:CDS | 55.0% | |
| GTTGGACTGCCAACATGGAG+AGG | - | chr5.2:80908586-80908605 | MS.gene81285:intron | 55.0% | |
| TATGTGTGGGAGTCCCAAGC+TGG | - | chr5.2:80907298-80907317 | MS.gene81285:CDS | 55.0% | |
| TCTTGAGGAACGCCGTCTGA+AGG | - | chr5.2:80907414-80907433 | MS.gene81285:CDS | 55.0% | |
| TGCTGACATGCCACCATTGG+AGG | - | chr5.2:80908890-80908909 | MS.gene81285:CDS | 55.0% | |
| TTGAGGGATAGCAGCATGGC+TGG | - | chr5.2:80908627-80908646 | MS.gene81285:intron | 55.0% | |
| ! | GGAAACGTGCTGATGCTGAC+AGG | - | chr5.2:80908712-80908731 | MS.gene81285:intron | 55.0% |
| !! | CAAGGAGGTGTTGGGTGACA+AGG | - | chr5.2:80908497-80908516 | MS.gene81285:intron | 55.0% |
| GGAACGCCGTCTGAAGGACT+TGG | - | chr5.2:80907420-80907439 | MS.gene81285:CDS | 60.0% | |
| TGTGGGAGTCCCAAGCTGGT+GGG | - | chr5.2:80907302-80907321 | MS.gene81285:CDS | 60.0% | |
| GTGTGGGAGTCCCAAGCTGG+TGG | - | chr5.2:80907301-80907320 | MS.gene81285:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 80905985 | 80908959 | 80905985 | ID=MS.gene81285 |
| chr5.2 | mRNA | 80905985 | 80908959 | 80905985 | ID=MS.gene81285.t1;Parent=MS.gene81285 |
| chr5.2 | exon | 80908837 | 80908959 | 80908837 | ID=MS.gene81285.t1.exon1;Parent=MS.gene81285.t1 |
| chr5.2 | CDS | 80908837 | 80908959 | 80908837 | ID=cds.MS.gene81285.t1;Parent=MS.gene81285.t1 |
| chr5.2 | exon | 80907924 | 80908065 | 80907924 | ID=MS.gene81285.t1.exon2;Parent=MS.gene81285.t1 |
| chr5.2 | CDS | 80907924 | 80908065 | 80907924 | ID=cds.MS.gene81285.t1;Parent=MS.gene81285.t1 |
| chr5.2 | exon | 80905985 | 80907819 | 80905985 | ID=MS.gene81285.t1.exon3;Parent=MS.gene81285.t1 |
| chr5.2 | CDS | 80905985 | 80907819 | 80905985 | ID=cds.MS.gene81285.t1;Parent=MS.gene81285.t1 |
| Gene Sequence |
| Protein sequence |
