AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene022491

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022491.t1 MTR_3g074410 62.672 509 109 6 1 428 1 509 0.0 612
MS.gene022491.t1 MTR_3g074390 73.383 402 88 2 1 383 1 402 0.0 598
MS.gene022491.t1 MTR_3g074270 58.873 479 137 6 1 420 1 478 0.0 549
MS.gene022491.t1 MTR_3g074380 74.590 366 76 3 1 349 1 366 0.0 549
MS.gene022491.t1 MTR_3g074340 66.873 323 42 4 171 428 18 340 9.39e-143 411
MS.gene022491.t1 MTR_3g074370 67.183 323 41 4 171 428 18 340 1.27e-142 410
MS.gene022491.t1 MTR_3g074320 66.563 323 43 4 171 428 18 340 6.69e-142 409
MS.gene022491.t1 MTR_3g008160 49.242 396 177 8 8 383 6 397 2.10e-125 373
MS.gene022491.t1 MTR_3g074400 56.374 353 106 6 50 387 1 320 9.42e-121 358
MS.gene022491.t1 MTR_5g041550 46.766 402 193 7 1 383 1 400 4.38e-118 354
MS.gene022491.t1 MTR_5g082540 46.429 392 190 5 10 383 8 397 1.28e-117 353
MS.gene022491.t1 MTR_1g038630 44.862 399 202 4 1 383 1 397 3.36e-117 352
MS.gene022491.t1 MTR_3g008170 48.241 398 184 7 5 383 4 398 9.14e-117 351
MS.gene022491.t1 MTR_5g006070 46.907 388 183 7 15 383 14 397 6.73e-115 346
MS.gene022491.t1 MTR_3g093010 47.355 397 188 7 4 381 3 397 9.12e-113 340
MS.gene022491.t1 MTR_4g091370 49.096 387 177 6 15 383 15 399 7.14e-112 338
MS.gene022491.t1 MTR_0009s0370 45.316 395 194 7 8 383 7 398 5.90e-111 336
MS.gene022491.t1 MTR_4g090600 48.259 402 184 7 7 386 3 402 6.36e-109 331
MS.gene022491.t1 MTR_0204s0020 43.896 385 197 5 12 381 10 390 1.09e-108 329
MS.gene022491.t1 MTR_1g104780 44.279 402 200 8 1 383 1 397 1.77e-107 327
MS.gene022491.t1 MTR_3g008160 47.727 352 162 7 50 383 1 348 1.06e-105 321
MS.gene022491.t1 MTR_3g023480 43.814 388 197 6 15 383 13 398 1.24e-105 322
MS.gene022491.t1 MTR_0204s0020 43.117 385 197 6 12 381 10 387 1.06e-104 319
MS.gene022491.t1 MTR_5g094760 43.814 388 195 6 1 369 1 384 5.06e-104 318
MS.gene022491.t1 MTR_7g091690 43.557 388 196 6 1 369 1 384 9.99e-104 317
MS.gene022491.t1 MTR_1g038600 41.814 397 199 5 1 383 1 379 8.09e-103 314
MS.gene022491.t1 MTR_1g104770 41.646 401 213 6 1 383 1 398 1.23e-102 314
MS.gene022491.t1 MTR_1g104750 42.643 401 208 7 1 383 1 397 1.91e-102 313
MS.gene022491.t1 MTR_0204s0040 40.863 394 214 6 3 381 9 398 9.93e-102 312
MS.gene022491.t1 MTR_4g116790 42.105 361 192 4 3 348 7 365 2.44e-100 304
MS.gene022491.t1 MTR_3g093060 46.023 352 168 7 50 381 1 350 5.68e-100 306
MS.gene022491.t1 MTR_8g102860 45.220 387 190 10 15 383 18 400 1.00e-99 307
MS.gene022491.t1 MTR_4g116770 40.863 394 214 6 3 381 205 594 1.07e-99 312
MS.gene022491.t1 MTR_4g116790 41.207 381 205 5 3 368 7 383 1.15e-99 307
MS.gene022491.t1 MTR_6g087040 44.059 404 201 9 1 383 1 400 2.06e-99 306
MS.gene022491.t1 MTR_6g088375 44.059 404 201 9 1 383 1 400 2.06e-99 306
MS.gene022491.t1 MTR_5g006070 45.042 353 171 7 50 383 1 349 7.63e-97 298
MS.gene022491.t1 MTR_3g007910 43.797 395 173 9 4 381 3 365 4.25e-95 294
MS.gene022491.t1 MTR_3g074330 86.905 168 15 1 1 161 1 168 6.42e-94 280
MS.gene022491.t1 MTR_3g074360 86.905 168 15 1 1 161 1 168 6.42e-94 280
MS.gene022491.t1 MTR_3g074310 86.310 168 16 1 1 161 1 168 3.81e-93 278
MS.gene022491.t1 MTR_8g102860 44.886 352 172 10 50 383 1 348 3.56e-86 271
MS.gene022491.t1 MTR_0064s0040 46.835 158 71 2 4 160 5 150 1.09e-36 132
MS.gene022491.t1 MTR_5g096000 51.351 148 54 1 4 151 3 132 1.88e-36 135
MS.gene022491.t1 MTR_4g072030 28.134 359 204 10 27 351 31 369 6.31e-34 133
MS.gene022491.t1 MTR_4g069500 28.889 360 201 10 27 351 34 373 7.30e-33 130
MS.gene022491.t1 MTR_4g069500 31.525 295 166 8 92 351 30 323 1.49e-32 128
MS.gene022491.t1 MTR_6g088450 27.296 392 237 11 28 396 63 429 1.32e-31 126
MS.gene022491.t1 MTR_8g077890 25.726 482 240 15 28 411 24 485 2.31e-31 125
MS.gene022491.t1 MTR_8g103500 26.184 359 213 9 18 347 13 348 2.64e-31 125
MS.gene022491.t1 MTR_3g116240 28.809 361 202 13 27 351 32 373 3.20e-31 125
MS.gene022491.t1 MTR_2g013310 28.169 355 213 7 24 355 53 388 2.42e-30 123
MS.gene022491.t1 MTR_2g013310 29.655 290 182 4 88 355 26 315 8.23e-30 120
MS.gene022491.t1 MTR_7g446340 26.389 360 223 8 20 356 51 391 4.33e-27 113
MS.gene022491.t1 MTR_6g007340 26.389 360 223 8 20 356 51 391 4.33e-27 113
MS.gene022491.t1 MTR_1g038620 35.625 160 84 3 187 346 50 190 1.21e-25 103
MS.gene022491.t1 MTR_2g049020 29.326 341 199 9 34 350 37 359 2.09e-25 108
MS.gene022491.t1 MTR_5g075300 26.087 391 231 12 28 383 24 391 3.27e-25 108
MS.gene022491.t1 MTR_2g048720 28.657 335 200 9 34 347 37 353 1.31e-24 106
MS.gene022491.t1 MTR_7g082270 25.070 359 232 8 9 351 51 388 7.62e-24 103
MS.gene022491.t1 MTR_2g026140 27.976 336 210 8 29 351 30 346 7.81e-24 104
MS.gene022491.t1 MTR_7g082270 25.000 344 223 7 9 338 51 373 9.16e-24 103
MS.gene022491.t1 MTR_6g018790 24.926 337 218 6 16 338 98 413 2.07e-23 102
MS.gene022491.t1 MTR_7g094450 25.436 401 216 11 79 404 77 469 9.61e-22 97.4
MS.gene022491.t1 MTR_5g019870 26.403 303 187 9 75 342 49 350 1.72e-21 97.1
MS.gene022491.t1 MTR_7g094110 26.455 378 215 9 82 404 82 451 2.11e-21 96.3
MS.gene022491.t1 MTR_8g077300 25.249 301 204 3 82 368 79 372 2.35e-21 96.3
MS.gene022491.t1 MTR_2g026160 25.485 361 227 8 34 371 38 379 3.16e-21 96.7
MS.gene022491.t1 MTR_8g077310 26.408 284 188 3 82 351 87 363 2.07e-20 93.2
MS.gene022491.t1 MTR_8g077310 26.408 284 188 3 82 351 87 363 2.45e-20 93.6
MS.gene022491.t1 MTR_3g084110 25.330 379 236 11 34 394 39 388 8.99e-20 91.7
MS.gene022491.t1 MTR_7g094110 25.979 281 185 4 82 347 82 354 2.02e-19 90.5
MS.gene022491.t1 MTR_8g077310 26.007 273 181 3 93 351 1 266 2.41e-19 89.7
MS.gene022491.t1 MTR_4g077740 22.965 344 227 8 22 339 44 375 2.60e-19 90.5
MS.gene022491.t1 MTR_7g113970 24.242 297 208 5 82 367 102 392 3.22e-19 90.1
MS.gene022491.t1 MTR_7g113970 24.242 297 208 5 82 367 102 392 3.27e-19 89.7
MS.gene022491.t1 MTR_3g080240 25.836 329 200 11 28 337 98 401 5.55e-19 89.7
MS.gene022491.t1 MTR_7g113960 24.815 270 181 4 82 337 67 328 2.34e-18 87.4
MS.gene022491.t1 MTR_7g113960 24.815 270 181 4 82 337 67 328 2.76e-18 86.7
MS.gene022491.t1 MTR_1g022315 24.296 284 194 4 82 351 89 365 6.63e-18 86.3
MS.gene022491.t1 MTR_7g005910 26.100 341 216 8 29 351 39 361 1.21e-17 85.5
MS.gene022491.t1 MTR_2g020710 25.279 269 178 5 82 335 89 349 2.37e-17 84.0
MS.gene022491.t1 MTR_2g020710 25.279 269 178 5 82 335 89 349 2.38e-17 84.0
MS.gene022491.t1 MTR_2g020710 25.279 269 178 5 82 335 89 349 2.68e-17 83.6
MS.gene022491.t1 MTR_2g020710 25.373 268 177 5 83 335 1 260 3.09e-17 83.6
MS.gene022491.t1 MTR_2g020710 25.279 269 178 5 82 335 89 349 3.54e-17 84.0
MS.gene022491.t1 MTR_4g069500 29.348 184 108 5 188 351 3 184 4.07e-17 82.4
MS.gene022491.t1 MTR_1g022315 23.810 273 187 4 93 351 1 266 4.21e-17 83.2
MS.gene022491.t1 MTR_4g064820 25.691 362 224 9 22 352 95 442 9.38e-17 82.4
MS.gene022491.t1 MTR_5g020270 25.000 284 192 3 82 351 90 366 1.28e-16 82.0
MS.gene022491.t1 MTR_6g087910 22.481 258 181 6 92 335 102 354 1.85e-16 81.6
MS.gene022491.t1 MTR_1g116660 24.289 387 240 11 29 394 41 395 2.96e-16 81.3
MS.gene022491.t1 MTR_5g020270 24.542 273 185 3 93 351 1 266 8.70e-16 79.0
MS.gene022491.t1 MTR_4g013205 22.324 327 212 6 28 337 41 342 4.41e-15 77.4
MS.gene022491.t1 MTR_4g118610 21.561 269 188 5 82 335 92 352 2.06e-14 75.1
MS.gene022491.t1 MTR_1g116650 24.784 347 209 9 25 351 78 392 2.26e-14 75.5
MS.gene022491.t1 MTR_4g118610 21.561 269 188 5 82 335 92 352 3.19e-14 74.7
MS.gene022491.t1 MTR_5g077580 28.497 193 126 2 144 335 189 370 2.49e-13 72.0
MS.gene022491.t1 MTR_5g020270 24.407 295 188 6 82 350 90 375 1.17e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022491.t1 AT1G34580 59.352 401 145 4 1 383 1 401 7.38e-156 450
MS.gene022491.t1 AT1G34580 65.714 35 12 0 385 419 468 502 9.75e-11 63.9
MS.gene022491.t1 AT1G34580 57.550 351 132 3 50 383 1 351 1.35e-130 384
MS.gene022491.t1 AT3G19930 49.118 397 183 5 4 383 3 397 5.95e-124 369
MS.gene022491.t1 AT3G19930 49.118 397 183 5 4 383 3 397 5.95e-124 369
MS.gene022491.t1 AT1G11260 47.880 401 189 6 1 383 1 399 1.50e-123 369
MS.gene022491.t1 AT4G21480 48.622 399 187 5 1 383 1 397 1.59e-121 363
MS.gene022491.t1 AT5G23270 48.020 404 185 8 1 383 1 400 5.05e-119 357
MS.gene022491.t1 AT3G19940 48.303 383 176 6 19 383 21 399 5.78e-115 346
MS.gene022491.t1 AT1G50310 47.382 382 182 6 19 383 21 400 2.87e-113 342
MS.gene022491.t1 AT5G26340 45.137 401 199 6 1 383 1 398 6.08e-112 339
MS.gene022491.t1 AT4G02050 43.000 400 205 6 1 381 1 396 8.88e-107 325
MS.gene022491.t1 AT4G02050 43.000 400 205 6 1 381 1 396 8.88e-107 325
MS.gene022491.t1 AT5G61520 43.443 366 183 6 17 361 18 380 4.33e-103 316
MS.gene022491.t1 AT5G26250 43.052 367 192 4 12 363 11 375 5.21e-99 305
MS.gene022491.t1 AT3G05960 41.892 370 198 4 9 363 7 374 5.09e-96 297
MS.gene022491.t1 AT1G07340 41.750 400 211 6 1 383 1 395 8.66e-95 294
MS.gene022491.t1 AT1G77210 39.900 401 217 8 1 381 1 397 1.84e-93 291
MS.gene022491.t1 AT1G77210 39.900 401 217 8 1 381 1 397 1.84e-93 291
MS.gene022491.t1 AT5G61520 41.617 334 171 6 49 361 2 332 9.26e-88 275
MS.gene022491.t1 AT1G50310 46.121 232 121 4 154 383 28 257 1.89e-64 211
MS.gene022491.t1 AT1G77210 37.778 225 134 5 159 381 28 248 3.55e-48 168
MS.gene022491.t1 AT3G18830 28.889 360 202 10 27 351 40 380 3.73e-33 131
MS.gene022491.t1 AT2G18480 30.398 352 187 11 37 351 36 366 2.99e-31 125
MS.gene022491.t1 AT2G16120 28.889 360 202 12 27 351 30 370 5.79e-31 124
MS.gene022491.t1 AT2G16130 29.275 345 192 11 27 338 30 355 2.06e-30 123
MS.gene022491.t1 AT2G20780 26.629 353 219 10 20 351 51 384 1.40e-27 115
MS.gene022491.t1 AT2G20780 27.719 285 186 6 87 351 42 326 1.16e-26 112
MS.gene022491.t1 AT4G36670 26.287 369 216 10 27 359 21 369 3.91e-26 110
MS.gene022491.t1 AT1G30220 28.923 325 192 8 34 337 39 345 3.30e-25 108
MS.gene022491.t1 AT5G16150 24.706 340 215 6 16 338 98 413 8.05e-25 107
MS.gene022491.t1 AT5G16150 24.706 340 215 6 16 338 98 413 8.05e-25 107
MS.gene022491.t1 AT5G16150 24.706 340 215 6 16 338 98 413 8.05e-25 107
MS.gene022491.t1 AT2G48020 25.795 283 187 5 82 349 68 342 7.07e-24 102
MS.gene022491.t1 AT1G54730 26.888 331 185 10 29 337 38 333 8.44e-24 102
MS.gene022491.t1 AT4G16480 28.177 362 203 10 34 364 38 373 9.76e-24 104
MS.gene022491.t1 AT4G16480 28.177 362 203 10 34 364 38 373 9.76e-24 104
MS.gene022491.t1 AT4G16480 28.177 362 203 10 34 364 38 373 9.76e-24 104
MS.gene022491.t1 AT2G48020 25.795 283 187 5 82 349 68 342 1.01e-23 103
MS.gene022491.t1 AT2G48020 25.795 283 187 5 82 349 68 342 1.01e-23 103
MS.gene022491.t1 AT1G54730 26.888 331 185 10 29 337 38 333 1.07e-23 103
MS.gene022491.t1 AT1G54730 26.888 331 185 10 29 337 38 333 1.20e-23 102
MS.gene022491.t1 AT1G54730 26.888 331 185 10 29 337 38 333 1.20e-23 102
MS.gene022491.t1 AT1G54730 26.888 331 185 10 29 337 38 333 1.53e-23 102
MS.gene022491.t1 AT2G48020 25.185 270 180 4 82 337 68 329 1.29e-22 99.0
MS.gene022491.t1 AT1G54730 27.124 306 169 8 29 312 38 311 1.77e-22 97.8
MS.gene022491.t1 AT1G54730 27.124 306 169 8 29 312 38 311 1.77e-22 97.8
MS.gene022491.t1 AT3G05160 25.284 352 220 7 16 351 14 338 1.92e-22 99.8
MS.gene022491.t1 AT1G75220 24.377 361 233 5 20 366 45 379 2.76e-22 99.4
MS.gene022491.t1 AT1G54730 27.124 306 169 9 29 312 38 311 3.96e-22 98.2
MS.gene022491.t1 AT1G08930 25.291 344 217 7 8 337 42 359 4.43e-22 99.0
MS.gene022491.t1 AT1G08930 25.291 344 217 7 8 337 42 359 4.43e-22 99.0
MS.gene022491.t1 AT1G54730 27.124 306 169 8 29 312 38 311 5.07e-22 97.8
MS.gene022491.t1 AT1G54730 27.124 306 169 9 29 312 38 311 6.59e-22 97.8
MS.gene022491.t1 AT3G05400 26.335 281 184 5 82 347 66 338 1.20e-21 97.4
MS.gene022491.t1 AT3G05165 25.284 352 220 7 16 351 23 347 4.80e-21 95.5
MS.gene022491.t1 AT3G05165 25.284 352 220 7 16 351 23 347 4.80e-21 95.5
MS.gene022491.t1 AT3G05165 25.284 352 220 7 16 351 23 347 4.80e-21 95.5
MS.gene022491.t1 AT3G05160 26.408 284 185 5 84 351 14 289 5.90e-21 94.7
MS.gene022491.t1 AT3G05160 26.408 284 185 5 84 351 14 289 5.90e-21 94.7
MS.gene022491.t1 AT3G05165 24.854 342 216 6 16 343 23 337 6.63e-21 95.5
MS.gene022491.t1 AT1G67300 26.316 285 180 7 92 359 103 374 6.90e-21 94.7
MS.gene022491.t1 AT1G67300 26.316 285 180 7 92 359 103 374 6.90e-21 94.7
MS.gene022491.t1 AT3G05165 25.284 352 220 7 16 351 23 347 7.09e-21 95.1
MS.gene022491.t1 AT3G05165 25.284 352 220 7 16 351 23 347 7.09e-21 95.1
MS.gene022491.t1 AT1G67300 26.316 285 180 7 92 359 103 374 7.90e-21 94.7
MS.gene022491.t1 AT1G67300 26.316 285 180 7 92 359 103 374 7.90e-21 94.7
MS.gene022491.t1 AT1G67300 26.316 285 180 7 92 359 103 374 8.60e-21 94.7
MS.gene022491.t1 AT1G67300 26.316 285 180 7 92 359 103 374 8.60e-21 94.7
MS.gene022491.t1 AT3G05400 29.317 249 150 6 116 347 79 318 1.81e-20 93.6
MS.gene022491.t1 AT5G17010 24.464 466 258 12 21 404 45 498 1.92e-20 94.0
MS.gene022491.t1 AT5G17010 24.464 466 258 12 21 404 45 498 1.92e-20 94.0
MS.gene022491.t1 AT5G17010 24.464 466 258 12 21 404 45 498 1.92e-20 94.0
MS.gene022491.t1 AT1G08900 24.359 312 218 4 82 383 23 326 2.18e-20 93.2
MS.gene022491.t1 AT1G08900 25.455 275 191 3 82 346 65 335 2.29e-20 93.2
MS.gene022491.t1 AT1G67300 26.087 276 181 6 92 350 103 372 2.70e-20 93.6
MS.gene022491.t1 AT1G19450 24.100 361 234 5 20 366 46 380 2.81e-20 93.2
MS.gene022491.t1 AT2G35740 26.087 345 211 9 34 353 37 362 2.94e-20 93.6
MS.gene022491.t1 AT1G08900 25.455 275 191 3 82 346 57 327 3.46e-20 92.8
MS.gene022491.t1 AT1G08900 25.455 275 191 3 82 346 65 335 3.69e-20 92.8
MS.gene022491.t1 AT1G08900 25.455 275 191 3 82 346 65 335 3.69e-20 92.8
MS.gene022491.t1 AT5G27350 23.782 349 222 7 16 348 24 344 1.86e-19 90.9
MS.gene022491.t1 AT3G05150 27.181 298 187 6 82 360 75 361 7.49e-19 89.0
MS.gene022491.t1 AT3G05150 27.181 298 187 6 82 360 75 361 7.49e-19 89.0
MS.gene022491.t1 AT3G05150 27.181 298 187 6 82 360 75 361 7.62e-19 89.0
MS.gene022491.t1 AT1G79820 24.847 326 205 10 28 337 59 360 2.71e-18 87.0
MS.gene022491.t1 AT1G79820 24.847 326 205 10 28 337 59 360 3.71e-18 87.0
MS.gene022491.t1 AT1G79820 24.847 326 205 10 28 337 59 360 3.71e-18 87.0
MS.gene022491.t1 AT3G05155 23.077 325 214 9 82 391 67 370 4.61e-18 86.7
MS.gene022491.t1 AT5G59250 25.648 347 217 9 22 339 97 431 5.65e-18 86.7
MS.gene022491.t1 AT4G04760 26.296 270 174 6 82 334 71 332 1.51e-17 85.1
MS.gene022491.t1 AT1G08890 26.045 311 210 6 82 381 67 368 1.68e-17 84.7
MS.gene022491.t1 AT3G05155 22.509 271 183 5 82 337 67 325 1.75e-17 83.6
MS.gene022491.t1 AT4G04760 26.056 284 184 7 82 347 12 287 2.21e-17 84.3
MS.gene022491.t1 AT4G04760 26.056 284 184 7 82 347 71 346 2.73e-17 84.3
MS.gene022491.t1 AT5G27360 21.557 334 227 4 16 338 28 337 5.26e-17 83.2
MS.gene022491.t1 AT5G27360 21.557 334 227 4 16 338 28 337 6.12e-17 83.2
MS.gene022491.t1 AT5G27360 21.557 334 227 4 16 338 76 385 7.74e-17 83.2
MS.gene022491.t1 AT1G05030 22.310 381 252 11 21 384 77 430 4.58e-16 80.5
MS.gene022491.t1 AT4G04750 24.742 291 193 5 82 354 76 358 9.00e-16 79.7
MS.gene022491.t1 AT4G04750 24.742 291 193 5 82 354 76 358 9.00e-16 79.7
MS.gene022491.t1 AT4G04750 24.742 291 193 5 82 354 120 402 1.24e-15 79.3
MS.gene022491.t1 AT3G03090 24.249 466 259 13 21 404 45 498 1.53e-15 79.0
MS.gene022491.t1 AT3G20460 23.466 277 194 5 82 347 93 362 4.54e-15 77.4
MS.gene022491.t1 AT2G43330 25.145 346 219 9 27 351 35 361 4.74e-15 77.4
MS.gene022491.t1 AT1G05030 22.785 316 216 8 87 384 73 378 6.28e-15 77.0
MS.gene022491.t1 AT5G27360 25.161 155 113 1 184 338 82 233 7.39e-15 76.3
MS.gene022491.t1 AT5G27360 25.161 155 113 1 184 338 82 233 7.39e-15 76.3
MS.gene022491.t1 AT1G08920 23.636 275 188 6 82 341 72 339 3.26e-14 74.7
MS.gene022491.t1 AT1G08920 23.636 275 188 6 82 341 72 339 4.00e-14 74.3
MS.gene022491.t1 AT1G08920 23.048 269 187 5 82 337 72 333 7.85e-14 73.6
MS.gene022491.t1 AT3G51490 27.660 188 118 6 87 258 2 187 1.28e-13 73.2
MS.gene022491.t1 AT3G51490 27.660 188 118 6 87 258 52 237 1.49e-13 73.2
MS.gene022491.t1 AT3G51490 27.660 188 118 6 87 258 52 237 1.62e-13 73.2
MS.gene022491.t1 AT5G18840 21.831 284 208 4 82 354 84 364 2.11e-13 72.4
MS.gene022491.t1 AT5G17010 23.198 444 231 13 21 404 42 435 2.83e-12 68.6

Find 95 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGTCAATGTACATTATA+TGG 0.160882 3.2:+66897088 MS.gene022491:CDS
CTTGCTGGTGCTGCTATTAA+TGG 0.178937 3.2:+66895468 MS.gene022491:CDS
GCAGCCTTTCTTAGAATATC+TGG 0.181761 3.2:-66895285 None:intergenic
GGTCGTATTCTTCTTGGTTT+TGG 0.185325 3.2:+66895522 MS.gene022491:CDS
GGATATGACATTGGGATTTC+AGG 0.189475 3.2:+66894753 MS.gene022491:CDS
TTACTTTCTGCCGTTATTCT+TGG 0.197875 3.2:+66896378 MS.gene022491:CDS
ATCCTTGGTCGTATTCTTCT+TGG 0.222527 3.2:+66895516 MS.gene022491:CDS
ACGGGCTTCCAATTCTTCTT+AGG 0.243749 3.2:+66895931 MS.gene022491:CDS
CTCTTTCAATCTGTGGGTTT+AGG 0.277247 3.2:+66896342 MS.gene022491:CDS
GGTGGTGCCATCTTTCTTGC+TGG 0.282200 3.2:+66895453 MS.gene022491:CDS
CTCTCAAATATGGTCATAAA+TGG 0.289729 3.2:-66896228 None:intergenic
TCTGCAATGCTTTCCTGGCT+TGG 0.290814 3.2:-66896119 None:intergenic
TATGGGGCAAACATTGGTTT+TGG 0.323870 3.2:+66897106 MS.gene022491:CDS
CGCCAACTCCTAAGAAGAAT+TGG 0.329302 3.2:-66895939 None:intergenic
CGAAGATTCTTGTTCATTAC+GGG 0.351064 3.2:+66896456 MS.gene022491:CDS
GATGGCACCACCCAACATTA+TGG 0.359537 3.2:-66895442 None:intergenic
GCCACGTTCAACCAAGCTGC+TGG 0.360284 3.2:-66896088 None:intergenic
TCGATATTGTCTCTCAAATA+TGG 0.363219 3.2:-66896238 None:intergenic
GGAGTCAATGTACATTATAT+GGG 0.376356 3.2:+66897089 MS.gene022491:CDS
ACGAAGATTCTTGTTCATTA+CGG 0.390145 3.2:+66896455 MS.gene022491:CDS
CATTCTAATGCTTGTCTGCC+TGG 0.399154 3.2:+66896482 MS.gene022491:CDS
GGGAAGAATTTATTGAGAAA+TGG 0.402684 3.2:-66895264 None:intergenic
GGGCAACGCAACATTGGTAT+TGG 0.408706 3.2:+66896795 MS.gene022491:CDS
TGGGGCTGGCGACTCTCTCT+TGG 0.414296 3.2:+66896006 MS.gene022491:CDS
TGACTCCAAAGCAATTCCTT+TGG 0.421772 3.2:-66897073 None:intergenic
CTTCCCAGATATTCTAAGAA+AGG 0.422736 3.2:+66895281 MS.gene022491:CDS
AAAGCAATTCCTTTGGTCTC+AGG 0.428168 3.2:-66897066 None:intergenic
CCCACAGATTGAAAGAGGTT+TGG 0.431157 3.2:-66896336 None:intergenic
GCTTTAACGACTGGTATTCA+TGG 0.437643 3.2:+66896754 MS.gene022491:CDS
TTCCAATTCTTCTTAGGAGT+TGG 0.438586 3.2:+66895937 MS.gene022491:CDS
TGAGACCAAAGGAATTGCTT+TGG 0.446229 3.2:+66897068 MS.gene022491:CDS
CCTGCAGCCGTGATGACAAT+TGG 0.446393 3.2:+66896042 MS.gene022491:CDS
AAGGTTGAAAATGGCAGGTG+GGG 0.448174 3.2:+66894632 None:intergenic
CTAAACCCACAGATTGAAAG+AGG 0.452624 3.2:-66896341 None:intergenic
AATATTGTTATGCTCATCCT+TGG 0.469597 3.2:+66895501 MS.gene022491:CDS
CCAAACCTCTTTCAATCTGT+GGG 0.474306 3.2:+66896336 MS.gene022491:CDS
GCCATTCGAAGGTGCATCAA+TGG 0.477746 3.2:-66894661 None:intergenic
CCAATTGTCATCACGGCTGC+AGG 0.478121 3.2:-66896042 None:intergenic
TCGCCAGCCCCATGTGTGCT+TGG 0.478528 3.2:-66895995 None:intergenic
GGAGTTGGCGTGGTTGCTGC+AGG 0.481761 3.2:+66895952 MS.gene022491:CDS
ACCAAACCTCTTTCAATCTG+TGG 0.482629 3.2:+66896335 MS.gene022491:CDS
TGTATTGTTGCTGCATCTAG+TGG 0.488167 3.2:+66894720 MS.gene022491:CDS
ACGCGACCGCCAAGCACACA+TGG 0.491049 3.2:+66895986 MS.gene022491:CDS
CCGCCAAGCACACATGGGGC+TGG 0.492419 3.2:+66895992 MS.gene022491:CDS
TGGTGAGGTGCTTTCAGCAC+GGG 0.492462 3.2:+66895913 MS.gene022491:intron
TTACTATGTTTCTATGCCGC+AGG 0.496329 3.2:+66896820 MS.gene022491:CDS
GCCATTGATGCACCTTCGAA+TGG 0.498649 3.2:+66894660 MS.gene022491:CDS
CAGCCTTTCTTAGAATATCT+GGG 0.503890 3.2:-66895284 None:intergenic
AGGTTGAAAATGGCAGGTGG+GGG 0.513919 3.2:+66894633 None:intergenic
CAACAAAAGCAGTTGAGACT+AGG 0.518496 3.2:-66896422 None:intergenic
CAAGGTTGAAAATGGCAGGT+GGG 0.519890 3.2:+66894631 None:intergenic
ATCCTCCATCGATGTTGAGC+CGG 0.528672 3.2:+66896152 MS.gene022491:CDS
TGCTGGGTGTGTCGGATATG+AGG 0.531185 3.2:-66896071 None:intergenic
CCAGCCCCATGTGTGCTTGG+CGG 0.531705 3.2:-66895992 None:intergenic
CCACGTTCAACCAAGCTGCT+GGG 0.533955 3.2:-66896087 None:intergenic
ACATTATATGGGGCAAACAT+TGG 0.535333 3.2:+66897100 MS.gene022491:CDS
AGTTAAAAGAACTCATTAAG+TGG 0.535827 3.2:+66896175 MS.gene022491:CDS
GCTTTGCTAGCTTTAACGAC+TGG 0.540231 3.2:+66896745 MS.gene022491:CDS
TGGACAAGGTTGAAAATGGC+AGG 0.542297 3.2:+66894627 None:intergenic
AACCAAGCTGCTGGGTGTGT+CGG 0.542991 3.2:-66896079 None:intergenic
TGTTAAAGGAGAAGTTGAGA+AGG 0.546071 3.2:+66897137 MS.gene022491:CDS
AGCAGCACCAGCAAGAAAGA+TGG 0.549935 3.2:-66895460 None:intergenic
AGCAAAGTCACTGCAGCTAT+CGG 0.550701 3.2:+66895408 MS.gene022491:CDS
GCACCTTCGAATGGCTTCGA+CGG 0.551765 3.2:+66894669 MS.gene022491:CDS
ATATCGACCTCACTTAATCA+TGG 0.560389 3.2:+66896254 MS.gene022491:CDS
ATCCGACACACCCAGCAGCT+TGG 0.562187 3.2:+66896077 MS.gene022491:CDS
TGGTACAAAGGACATGTCAA+AGG 0.564689 3.2:+66896774 MS.gene022491:CDS
TAACTCCGGCTCAACATCGA+TGG 0.564960 3.2:-66896157 None:intergenic
GTGGCAAGATAGACCAAGCC+AGG 0.572272 3.2:+66896106 MS.gene022491:CDS
GGTACAAAGGACATGTCAAA+GGG 0.573765 3.2:+66896775 MS.gene022491:CDS
GTCAAAGGGCAACGCAACAT+TGG 0.579145 3.2:+66896789 MS.gene022491:CDS
GCTGGTGCTGCTATTAATGG+AGG 0.590975 3.2:+66895471 MS.gene022491:CDS
CGCGACCGCCAAGCACACAT+GGG 0.593701 3.2:+66895987 MS.gene022491:CDS
GGTTGAAAATGGCAGGTGGG+GGG 0.597159 3.2:+66894634 None:intergenic
GAGTCAATGTACATTATATG+GGG 0.599950 3.2:+66897090 MS.gene022491:CDS
GATATTCTAAGAAAGGCTGC+TGG 0.607230 3.2:+66895288 MS.gene022491:CDS
CCCAGCAGCTTGGTTGAACG+TGG 0.607250 3.2:+66896087 MS.gene022491:CDS
TTTCCGTCGAAGCCATTCGA+AGG 0.608818 3.2:-66894672 None:intergenic
GTTGACGAGTCCAAGAATAA+CGG 0.609102 3.2:-66896388 None:intergenic
CTCCGGCTCAACATCGATGG+AGG 0.617782 3.2:-66896154 None:intergenic
AGATTCTTGTTCATTACGGG+TGG 0.620505 3.2:+66896459 MS.gene022491:CDS
ATGGTGAGGTGCTTTCAGCA+CGG 0.621157 3.2:+66895912 MS.gene022491:intron
GAAGGCACCAATTGTCATCA+CGG 0.622211 3.2:-66896049 None:intergenic
ACTCTCTCTTGGACTAGCAG+TGG 0.636345 3.2:+66896017 MS.gene022491:CDS
TTCAGGAGGTGTTACAACAA+TGG 0.637356 3.2:+66895239 MS.gene022491:intron
ATTCTTCTTAGGAGTTGGCG+TGG 0.637882 3.2:+66895942 MS.gene022491:CDS
GACTGGTATTCATGGTACAA+AGG 0.642800 3.2:+66896762 MS.gene022491:CDS
AAAGCATTGCAGAAAATCAG+AGG 0.644118 3.2:+66896129 MS.gene022491:CDS
ACAAGGTTGAAAATGGCAGG+TGG 0.652463 3.2:+66894630 None:intergenic
GCAAATGCCATGATTAAGTG+AGG 0.668086 3.2:-66896261 None:intergenic
GCGACCGCCAAGCACACATG+GGG 0.668399 3.2:+66895988 MS.gene022491:CDS
GGGTGTGTCGGATATGAGGA+AGG 0.669650 3.2:-66896067 None:intergenic
TTGAGACTAGGATAGAAGCA+AGG 0.681588 3.2:-66896410 None:intergenic
AACCAAGAAGAATACGACCA+AGG 0.682921 3.2:-66895518 None:intergenic
TCTGTGGGTTTAGGAAACAA+CGG 0.704878 3.2:+66896351 MS.gene022491:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAACTAAAGAATTAAAT+TGG + chr3.2:66894998-66895017 MS.gene022491:intron 10.0%
!! CTAAAAGTTAAATTAAAAAA+GGG - chr3.2:66895666-66895685 None:intergenic 10.0%
!! TAAAAGTTAAATTAAAAAAG+GGG - chr3.2:66895665-66895684 None:intergenic 10.0%
!! TAAATAATATTATACACATA+TGG - chr3.2:66896524-66896543 None:intergenic 10.0%
!! TTTATAATGAAAAAACAAAA+AGG - chr3.2:66894786-66894805 None:intergenic 10.0%
!! GCTAAAAGTTAAATTAAAAA+AGG - chr3.2:66895667-66895686 None:intergenic 15.0%
!!! AACATTTTTCATTAGTAAAA+AGG - chr3.2:66895213-66895232 None:intergenic 15.0%
!!! AAGCAAATTTATTTTAAACA+TGG - chr3.2:66895822-66895841 None:intergenic 15.0%
!!! ACATTTTTCATTAGTAAAAA+GGG - chr3.2:66895212-66895231 None:intergenic 15.0%
!!! AGTAGCAATATTTTAAATAA+AGG - chr3.2:66895781-66895800 None:intergenic 15.0%
!!! TAATGATTTTGACATTTTAT+AGG - chr3.2:66895074-66895093 None:intergenic 15.0%
!!! TTTTATCTTCAAAATTTACT+TGG + chr3.2:66895161-66895180 MS.gene022491:intron 15.0%
!! ACATAAAAATCATAATGTTG+TGG + chr3.2:66895737-66895756 MS.gene022491:intron 20.0%
!! TAAATTAAAAAAGGGGAAAA+TGG - chr3.2:66895658-66895677 None:intergenic 20.0%
!! TGAAAAATGTTATCAAATTC+AGG + chr3.2:66895222-66895241 MS.gene022491:intron 20.0%
!!! AAAACATTTTCTCTCATTTT+GGG - chr3.2:66894873-66894892 None:intergenic 20.0%
!!! AACATGTCTATTTAAAATTG+TGG - chr3.2:66895689-66895708 None:intergenic 20.0%
!!! TAAAACATTTTCTCTCATTT+TGG - chr3.2:66894874-66894893 None:intergenic 20.0%
! AAAATGTTATCAAATTCAGG+AGG + chr3.2:66895225-66895244 MS.gene022491:intron 25.0%
! AGTTAAAAGAACTCATTAAG+TGG + chr3.2:66896175-66896194 MS.gene022491:CDS 25.0%
! ATTGTATTACATGATGCAAT+TGG + chr3.2:66895846-66895865 MS.gene022491:intron 25.0%
! GTCAAAATCATTAGAGTAAT+GGG + chr3.2:66895081-66895100 MS.gene022491:intron 25.0%
! TAAAGGATGCTATCAAAATT+TGG - chr3.2:66895764-66895783 None:intergenic 25.0%
! TAGACGGAGAAATTAAAATA+AGG - chr3.2:66896655-66896674 None:intergenic 25.0%
! TGTCAAAATCATTAGAGTAA+TGG + chr3.2:66895080-66895099 MS.gene022491:intron 25.0%
!! TTTCTTGTTCTATGCATTTT+GGG + chr3.2:66897008-66897027 MS.gene022491:intron 25.0%
!!! TCATTTTTGGATATGACATT+GGG + chr3.2:66894745-66894764 MS.gene022491:CDS 25.0%
!!! TTAATGAGTTCTTTTAACTC+CGG - chr3.2:66896174-66896193 None:intergenic 25.0%
AAATAACGACAGAAAGATTG+CGG + chr3.2:66896597-66896616 MS.gene022491:intron 30.0%
AATATTGTTATGCTCATCCT+TGG + chr3.2:66895501-66895520 MS.gene022491:CDS 30.0%
ACGAAGATTCTTGTTCATTA+CGG + chr3.2:66896455-66896474 MS.gene022491:CDS 30.0%
AGCAAAAAACATGCTCTAAT+TGG - chr3.2:66894813-66894832 None:intergenic 30.0%
CCTGTAAACTGTTGAAAAAA+CGG - chr3.2:66896291-66896310 None:intergenic 30.0%
CGAAAAAACACCATAATGTT+GGG + chr3.2:66895432-66895451 MS.gene022491:CDS 30.0%
CTCTCAAATATGGTCATAAA+TGG - chr3.2:66896231-66896250 None:intergenic 30.0%
CTGTAAACTGTTGAAAAAAC+GGG - chr3.2:66896290-66896309 None:intergenic 30.0%
GAATTAAATTGGACTCAACA+AGG + chr3.2:66895009-66895028 MS.gene022491:intron 30.0%
GAGTCAATGTACATTATATG+GGG + chr3.2:66897090-66897109 MS.gene022491:CDS 30.0%
GGAGTCAATGTACATTATAT+GGG + chr3.2:66897089-66897108 MS.gene022491:CDS 30.0%
GGGAAGAATTTATTGAGAAA+TGG - chr3.2:66895267-66895286 None:intergenic 30.0%
TAAGGACGAAAATTTAGAGA+CGG - chr3.2:66896637-66896656 None:intergenic 30.0%
TCGAAAAAACACCATAATGT+TGG + chr3.2:66895431-66895450 MS.gene022491:CDS 30.0%
TCGATATTGTCTCTCAAATA+TGG - chr3.2:66896241-66896260 None:intergenic 30.0%
TGGAGTCAATGTACATTATA+TGG + chr3.2:66897088-66897107 MS.gene022491:CDS 30.0%
TTACATGATGCAATTGGAAA+AGG + chr3.2:66895852-66895871 MS.gene022491:intron 30.0%
TTTATGGGGAAAATTTCACT+TGG - chr3.2:66896883-66896902 None:intergenic 30.0%
! CAGTTGTTCTGATTTTTATG+GGG - chr3.2:66896897-66896916 None:intergenic 30.0%
! CCAGTTGTTCTGATTTTTAT+GGG - chr3.2:66896898-66896917 None:intergenic 30.0%
! CTTTCTTGTTCTATGCATTT+TGG + chr3.2:66897007-66897026 MS.gene022491:intron 30.0%
! TCCAGTTGTTCTGATTTTTA+TGG - chr3.2:66896899-66896918 None:intergenic 30.0%
!! CTCATTTTTGGATATGACAT+TGG + chr3.2:66894744-66894763 MS.gene022491:CDS 30.0%
!!! ATCATTAGAGTAATGGGTTT+TGG + chr3.2:66895087-66895106 MS.gene022491:intron 30.0%
!!! CGTTTTTTCAACAGTTTACA+GGG + chr3.2:66896289-66896308 MS.gene022491:CDS 30.0%
AAAAACACCATAATGTTGGG+TGG + chr3.2:66895435-66895454 MS.gene022491:CDS 35.0%
AATTTCACTTGGAATTAGCC+AGG - chr3.2:66896872-66896891 None:intergenic 35.0%
ACATTATATGGGGCAAACAT+TGG + chr3.2:66897100-66897119 MS.gene022491:CDS 35.0%
ACTATTAGTACCAATACCAC+AGG - chr3.2:66896687-66896706 None:intergenic 35.0%
ATATCGACCTCACTTAATCA+TGG + chr3.2:66896254-66896273 MS.gene022491:CDS 35.0%
CAGCCTTTCTTAGAATATCT+GGG - chr3.2:66895287-66895306 None:intergenic 35.0%
CCCATAAAAATCAGAACAAC+TGG + chr3.2:66896895-66896914 MS.gene022491:intron 35.0%
CGAAGATTCTTGTTCATTAC+GGG + chr3.2:66896456-66896475 MS.gene022491:CDS 35.0%
TGTTAAAGGAGAAGTTGAGA+AGG + chr3.2:66897137-66897156 MS.gene022491:CDS 35.0%
TTACTTTCTGCCGTTATTCT+TGG + chr3.2:66896378-66896397 MS.gene022491:CDS 35.0%
TTCCAATTCTTCTTAGGAGT+TGG + chr3.2:66895937-66895956 MS.gene022491:CDS 35.0%
! CTTCCCAGATATTCTAAGAA+AGG + chr3.2:66895281-66895300 MS.gene022491:CDS 35.0%
! GCAATTTCAGAAAGGTATAG+TGG - chr3.2:66895883-66895902 None:intergenic 35.0%
! TTCTTTTTACCTGAGACCAA+AGG + chr3.2:66897057-66897076 MS.gene022491:CDS 35.0%
!! AAAGCATTGCAGAAAATCAG+AGG + chr3.2:66896129-66896148 MS.gene022491:CDS 35.0%
!! GTCGTATTCTTCTTGGTTTT+GGG + chr3.2:66895523-66895542 MS.gene022491:CDS 35.0%
!! TCTCAACTGCTTTTGTTGAT+CGG + chr3.2:66896427-66896446 MS.gene022491:CDS 35.0%
!!! CCGTTTTTTCAACAGTTTAC+AGG + chr3.2:66896288-66896307 MS.gene022491:CDS 35.0%
!!! TCGTATTCTTCTTGGTTTTG+GGG + chr3.2:66895524-66895543 MS.gene022491:CDS 35.0%
AAAGCAATTCCTTTGGTCTC+AGG - chr3.2:66897069-66897088 None:intergenic 40.0%
AACCAAGAAGAATACGACCA+AGG - chr3.2:66895521-66895540 None:intergenic 40.0%
ACCAAACCTCTTTCAATCTG+TGG + chr3.2:66896335-66896354 MS.gene022491:CDS 40.0%
ACTGGACAAAGTATAGCAGT+TGG + chr3.2:66896913-66896932 MS.gene022491:intron 40.0%
AGATTCTTGTTCATTACGGG+TGG + chr3.2:66896459-66896478 MS.gene022491:CDS 40.0%
AGTCGTTATACCTGTGGTAT+TGG + chr3.2:66896674-66896693 MS.gene022491:intron 40.0%
ATCCTTGGTCGTATTCTTCT+TGG + chr3.2:66895516-66895535 MS.gene022491:CDS 40.0%
CAACAAAAGCAGTTGAGACT+AGG - chr3.2:66896425-66896444 None:intergenic 40.0%
CCAAACCTCTTTCAATCTGT+GGG + chr3.2:66896336-66896355 MS.gene022491:CDS 40.0%
CGATTCAACTAGTGATCTAC+TGG - chr3.2:66894934-66894953 None:intergenic 40.0%
CTAAACCCACAGATTGAAAG+AGG - chr3.2:66896344-66896363 None:intergenic 40.0%
CTCTTTCAATCTGTGGGTTT+AGG + chr3.2:66896342-66896361 MS.gene022491:CDS 40.0%
CTGAAATTGCTCCACCAAAA+TGG + chr3.2:66895893-66895912 MS.gene022491:intron 40.0%
GACTGGTATTCATGGTACAA+AGG + chr3.2:66896762-66896781 MS.gene022491:CDS 40.0%
GCAAATGCCATGATTAAGTG+AGG - chr3.2:66896264-66896283 None:intergenic 40.0%
GCAGCCTTTCTTAGAATATC+TGG - chr3.2:66895288-66895307 None:intergenic 40.0%
GCTTTAACGACTGGTATTCA+TGG + chr3.2:66896754-66896773 MS.gene022491:CDS 40.0%
GGATATGACATTGGGATTTC+AGG + chr3.2:66894753-66894772 MS.gene022491:CDS 40.0%
GGTACAAAGGACATGTCAAA+GGG + chr3.2:66896775-66896794 MS.gene022491:CDS 40.0%
GTTGACGAGTCCAAGAATAA+CGG - chr3.2:66896391-66896410 None:intergenic 40.0%
TCTGTGGGTTTAGGAAACAA+CGG + chr3.2:66896351-66896370 MS.gene022491:CDS 40.0%
TGACTCCAAAGCAATTCCTT+TGG - chr3.2:66897076-66897095 None:intergenic 40.0%
TGAGACCAAAGGAATTGCTT+TGG + chr3.2:66897068-66897087 MS.gene022491:CDS 40.0%
TGGTACAAAGGACATGTCAA+AGG + chr3.2:66896774-66896793 MS.gene022491:CDS 40.0%
TGTATTGTTGCTGCATCTAG+TGG + chr3.2:66894720-66894739 MS.gene022491:CDS 40.0%
TTGAGACTAGGATAGAAGCA+AGG - chr3.2:66896413-66896432 None:intergenic 40.0%
TTGGTGGAGCAATTTCAGAA+AGG - chr3.2:66895891-66895910 None:intergenic 40.0%
! AAGGGTGAGCTTTATGACTT+TGG - chr3.2:66895194-66895213 None:intergenic 40.0%
! ATGCTATGCCACTTCAAGTT+TGG + chr3.2:66896982-66897001 MS.gene022491:intron 40.0%
! GATATTCTAAGAAAGGCTGC+TGG + chr3.2:66895288-66895307 MS.gene022491:CDS 40.0%
! GATTTTCTGCAATGCTTTCC+TGG - chr3.2:66896127-66896146 None:intergenic 40.0%
! GGTCGTATTCTTCTTGGTTT+TGG + chr3.2:66895522-66895541 MS.gene022491:CDS 40.0%
! TTACTATGTTTCTATGCCGC+AGG + chr3.2:66896820-66896839 MS.gene022491:CDS 40.0%
!! ACTGCTTTTGTTGATCGGTT+TGG + chr3.2:66896432-66896451 MS.gene022491:CDS 40.0%
!! AGAAAGCACCAAACTTGAAG+TGG - chr3.2:66896993-66897012 None:intergenic 40.0%
!! GGTTGCTTAATTTGCTTACC+AGG - chr3.2:66896503-66896522 None:intergenic 40.0%
!! TTCAGGAGGTGTTACAACAA+TGG + chr3.2:66895239-66895258 MS.gene022491:intron 40.0%
!!! ATTCTTCTTGGTTTTGGGGT+CGG + chr3.2:66895528-66895547 MS.gene022491:CDS 40.0%
!!! GCATCTAGTGGACTCATTTT+TGG + chr3.2:66894732-66894751 MS.gene022491:CDS 40.0%
!!! TATGGGGCAAACATTGGTTT+TGG + chr3.2:66897106-66897125 MS.gene022491:CDS 40.0%
!!! TTTTGGCGGAGGTTTGTTAA+AGG + chr3.2:66897123-66897142 MS.gene022491:CDS 40.0%
ACGGGCTTCCAATTCTTCTT+AGG + chr3.2:66895931-66895950 MS.gene022491:CDS 45.0%
AGCAAAGTCACTGCAGCTAT+CGG + chr3.2:66895408-66895427 MS.gene022491:CDS 45.0%
ATTCTTCTTAGGAGTTGGCG+TGG + chr3.2:66895942-66895961 MS.gene022491:CDS 45.0%
ATTGCTCCACCAAAATGGTG+AGG + chr3.2:66895898-66895917 MS.gene022491:intron 45.0%
CATTCTAATGCTTGTCTGCC+TGG + chr3.2:66896482-66896501 MS.gene022491:CDS 45.0%
CCACAGGTATAACGACTAGA+CGG - chr3.2:66896671-66896690 None:intergenic 45.0%
CCCACAGATTGAAAGAGGTT+TGG - chr3.2:66896339-66896358 None:intergenic 45.0%
CGCCAACTCCTAAGAAGAAT+TGG - chr3.2:66895942-66895961 None:intergenic 45.0%
GATCTACTGGTCAGTGACTT+TGG - chr3.2:66894921-66894940 None:intergenic 45.0%
GATTCTTGTTCTTGGTCGCA+GGG + chr3.2:66895714-66895733 MS.gene022491:intron 45.0%
TGGTCAGTGACTTTGGCAAA+TGG - chr3.2:66894914-66894933 None:intergenic 45.0%
TTGGAATTAGCCAGGTGAGT+GGG - chr3.2:66896864-66896883 None:intergenic 45.0%
!! AAAGCACCTCACCATTTTGG+TGG - chr3.2:66895907-66895926 None:intergenic 45.0%
!! CTTGCTGGTGCTGCTATTAA+TGG + chr3.2:66895468-66895487 MS.gene022491:CDS 45.0%
!! GAAGGCACCAATTGTCATCA+CGG - chr3.2:66896052-66896071 None:intergenic 45.0%
!! GCTTTGCTAGCTTTAACGAC+TGG + chr3.2:66896745-66896764 MS.gene022491:CDS 45.0%
!! TGTTTCTATGCCGCAGGTTT+TGG + chr3.2:66896826-66896845 MS.gene022491:intron 45.0%
!!! CTGAAAGCACCTCACCATTT+TGG - chr3.2:66895910-66895929 None:intergenic 45.0%
AGCAGCACCAGCAAGAAAGA+TGG - chr3.2:66895463-66895482 None:intergenic 50.0%
ATCCTCCATCGATGTTGAGC+CGG + chr3.2:66896152-66896171 MS.gene022491:CDS 50.0%
CCAAGACCAACCAAAACCTG+CGG - chr3.2:66896839-66896858 None:intergenic 50.0%
CCGTCTAGTCGTTATACCTG+TGG + chr3.2:66896668-66896687 MS.gene022491:intron 50.0%
CGATTCTTGTTCTTGGTCGC+AGG + chr3.2:66895713-66895732 MS.gene022491:intron 50.0%
CTTGGAATTAGCCAGGTGAG+TGG - chr3.2:66896865-66896884 None:intergenic 50.0%
GATGGCACCACCCAACATTA+TGG - chr3.2:66895445-66895464 None:intergenic 50.0%
GCCATTGATGCACCTTCGAA+TGG + chr3.2:66894660-66894679 MS.gene022491:CDS 50.0%
GCGACCAAGAACAAGAATCG+CGG - chr3.2:66895713-66895732 None:intergenic 50.0%
GGGCAACGCAACATTGGTAT+TGG + chr3.2:66896795-66896814 MS.gene022491:CDS 50.0%
GTCAAAGGGCAACGCAACAT+TGG + chr3.2:66896789-66896808 MS.gene022491:CDS 50.0%
GTTGCCGCGATTCTTGTTCT+TGG + chr3.2:66895706-66895725 MS.gene022491:intron 50.0%
TAACTCCGGCTCAACATCGA+TGG - chr3.2:66896160-66896179 None:intergenic 50.0%
TCTGCAATGCTTTCCTGGCT+TGG - chr3.2:66896122-66896141 None:intergenic 50.0%
TTTCCGTCGAAGCCATTCGA+AGG - chr3.2:66894675-66894694 None:intergenic 50.0%
! ATGGTGAGGTGCTTTCAGCA+CGG + chr3.2:66895912-66895931 MS.gene022491:intron 50.0%
! GCCATTCGAAGGTGCATCAA+TGG - chr3.2:66894664-66894683 None:intergenic 50.0%
!! ACTCTCTCTTGGACTAGCAG+TGG + chr3.2:66896017-66896036 MS.gene022491:CDS 50.0%
!! GCTGGTGCTGCTATTAATGG+AGG + chr3.2:66895471-66895490 MS.gene022491:CDS 50.0%
!! TCTATGCCGCAGGTTTTGGT+TGG + chr3.2:66896830-66896849 MS.gene022491:intron 50.0%
!!! CGCAGGTTTTGGTTGGTCTT+GGG + chr3.2:66896837-66896856 MS.gene022491:intron 50.0%
!!! GCAAACATTGGTTTTGGCGG+AGG + chr3.2:66897112-66897131 MS.gene022491:CDS 50.0%
!!! GCAGGTTTTGGTTGGTCTTG+GGG + chr3.2:66896838-66896857 MS.gene022491:intron 50.0%
!!! GGGGCAAACATTGGTTTTGG+CGG + chr3.2:66897109-66897128 MS.gene022491:CDS 50.0%
AACCAAGCTGCTGGGTGTGT+CGG - chr3.2:66896082-66896101 None:intergenic 55.0%
CCAATTGTCATCACGGCTGC+AGG - chr3.2:66896045-66896064 None:intergenic 55.0%
CCACGTTCAACCAAGCTGCT+GGG - chr3.2:66896090-66896109 None:intergenic 55.0%
CCTGCAGCCGTGATGACAAT+TGG + chr3.2:66896042-66896061 MS.gene022491:CDS 55.0%
GCACCTTCGAATGGCTTCGA+CGG + chr3.2:66894669-66894688 MS.gene022491:CDS 55.0%
GGGTGTGTCGGATATGAGGA+AGG - chr3.2:66896070-66896089 None:intergenic 55.0%
GTGGCAAGATAGACCAAGCC+AGG + chr3.2:66896106-66896125 MS.gene022491:CDS 55.0%
TGCTGGGTGTGTCGGATATG+AGG - chr3.2:66896074-66896093 None:intergenic 55.0%
! TGGTGAGGTGCTTTCAGCAC+GGG + chr3.2:66895913-66895932 MS.gene022491:intron 55.0%
!! GGTGGTGCCATCTTTCTTGC+TGG + chr3.2:66895453-66895472 MS.gene022491:CDS 55.0%
!!! CCGCAGGTTTTGGTTGGTCT+TGG + chr3.2:66896836-66896855 MS.gene022491:intron 55.0%
ATCCGACACACCCAGCAGCT+TGG + chr3.2:66896077-66896096 MS.gene022491:CDS 60.0%
CCCAGCAGCTTGGTTGAACG+TGG + chr3.2:66896087-66896106 MS.gene022491:CDS 60.0%
CTCCGGCTCAACATCGATGG+AGG - chr3.2:66896157-66896176 None:intergenic 60.0%
GCCACGTTCAACCAAGCTGC+TGG - chr3.2:66896091-66896110 None:intergenic 60.0%
ACGCGACCGCCAAGCACACA+TGG + chr3.2:66895986-66896005 MS.gene022491:CDS 65.0%
CCAGCCCCATGTGTGCTTGG+CGG - chr3.2:66895995-66896014 None:intergenic 65.0%
CGCGACCGCCAAGCACACAT+GGG + chr3.2:66895987-66896006 MS.gene022491:CDS 65.0%
GCGACCGCCAAGCACACATG+GGG + chr3.2:66895988-66896007 MS.gene022491:CDS 65.0%
GGAGTTGGCGTGGTTGCTGC+AGG + chr3.2:66895952-66895971 MS.gene022491:CDS 65.0%
TCGCCAGCCCCATGTGTGCT+TGG - chr3.2:66895998-66896017 None:intergenic 65.0%
! TGGGGCTGGCGACTCTCTCT+TGG + chr3.2:66896006-66896025 MS.gene022491:CDS 65.0%
CCGCCAAGCACACATGGGGC+TGG + chr3.2:66895992-66896011 MS.gene022491:CDS 70.0%
GGTCTTGGGGCCCACTCACC+TGG + chr3.2:66896851-66896870 MS.gene022491:intron 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 66894642 66897173 66894642 ID=MS.gene022491
chr3.2 mRNA 66894642 66897173 66894642 ID=MS.gene022491.t1;Parent=MS.gene022491
chr3.2 exon 66894642 66894774 66894642 ID=MS.gene022491.t1.exon1;Parent=MS.gene022491.t1
chr3.2 CDS 66894642 66894774 66894642 ID=cds.MS.gene022491.t1;Parent=MS.gene022491.t1
chr3.2 exon 66895244 66895567 66895244 ID=MS.gene022491.t1.exon2;Parent=MS.gene022491.t1
chr3.2 CDS 66895244 66895567 66895244 ID=cds.MS.gene022491.t1;Parent=MS.gene022491.t1
chr3.2 exon 66895920 66896503 66895920 ID=MS.gene022491.t1.exon3;Parent=MS.gene022491.t1
chr3.2 CDS 66895920 66896503 66895920 ID=cds.MS.gene022491.t1;Parent=MS.gene022491.t1
chr3.2 exon 66896733 66896841 66896733 ID=MS.gene022491.t1.exon4;Parent=MS.gene022491.t1
chr3.2 CDS 66896733 66896841 66896733 ID=cds.MS.gene022491.t1;Parent=MS.gene022491.t1
chr3.2 exon 66897037 66897173 66897037 ID=MS.gene022491.t1.exon5;Parent=MS.gene022491.t1
chr3.2 CDS 66897037 66897173 66897037 ID=cds.MS.gene022491.t1;Parent=MS.gene022491.t1
Gene Sequence

>MS.gene022491

ATGGCAGGTGGGGGGTTTGCCATTGATGCACCTTCGAATGGCTTCGACGGAAAGATAACACTCTCAGTTATCATTACTTGTATTGTTGCTGCATCTAGTGGACTCATTTTTGGATATGACATTGGGATTTCAGGTTTTCTTCCTTTTTGTTTTTTCATTATAAAGTATCCAATTAGAGCATGTTTTTTGCTTTTTAAAGCATCTTGTATTCTGCTACATCAATCTTTGCCCAAAATGAGAGAAAATGTTTTAAACAATGTTTCAAATATCCATTTGCCAAAGTCACTGACCAGTAGATCACTAGTTGAATCGCATGATTTGTACTACTAATAGTTTTCAATTTGAATGATTTGATCATATAACTAAAGAATTAAATTGGACTCAACAAGGTGTCTGTTTCTGTAGAAAATTCTAAAAAAAAAACTTATACCTATAAAATGTCAAAATCATTAGAGTAATGGGTTTTGGACAAAGTCTAATAATTGCATTTTAATCATGATGCTATACATTATTTTTACATTTTATCTTCAAAATTTACTTGGAGAAGAACCAAAGTCATAAAGCTCACCCTTTTTACTAATGAAAAATGTTATCAAATTCAGGAGGTGTTACAACAATGGTGCCATTTCTCAATAAATTCTTCCCAGATATTCTAAGAAAGGCTGCTGGTACTGAAGTAAACATGTACTGTGTGTATGACAGTCAAATGTTGACATTGTTTACGTCTTCTCTGTATCTAGCTGCGTTAGTGTCAACTCTTGTAGCTAGCAAAGTCACTGCAGCTATCGGTCGAAAAAACACCATAATGTTGGGTGGTGCCATCTTTCTTGCTGGTGCTGCTATTAATGGAGGTTCTGAAAATATTGTTATGCTCATCCTTGGTCGTATTCTTCTTGGTTTTGGGGTCGGTTTCACTAGTCAAGTAAGTGAACATATACAATTATACACATTTGTTAATAGTAGTTCAACATCGTCAACAATATAAAATTTTCTATTATACACAAGCAATGAGACCATTTTCCCCTTTTTTAATTTAACTTTTAGCCACAATTTTAAATAGACATGTTGCCGCGATTCTTGTTCTTGGTCGCAGGGACATAAAAATCATAATGTTGTGGTCCAAATTTTGATAGCATCCTTTATTTAAAATATTGCTACTAACTTTTAACTTAATAAACCATGTTTAAAATAAATTTGCTTGCTAATTGTATTACATGATGCAATTGGAAAAGGCGACTCCACTATACCTTTCTGAAATTGCTCCACCAAAATGGTGAGGTGCTTTCAGCACGGGCTTCCAATTCTTCTTAGGAGTTGGCGTGGTTGCTGCAGGTTGCATAAATTACGCGACCGCCAAGCACACATGGGGCTGGCGACTCTCTCTTGGACTAGCAGTGGTGCCTGCAGCCGTGATGACAATTGGTGCCTTCCTCATATCCGACACACCCAGCAGCTTGGTTGAACGTGGCAAGATAGACCAAGCCAGGAAAGCATTGCAGAAAATCAGAGGATCCTCCATCGATGTTGAGCCGGAGTTAAAAGAACTCATTAAGTGGACAGAAGTTTCGAAATCAGTGCAAGAAGAGCCATTTATGACCATATTTGAGAGACAATATCGACCTCACTTAATCATGGCATTTGCAATCCCGTTTTTTCAACAGTTTACAGGGATCAACATCGTCGCTTTCTATTCACCAAACCTCTTTCAATCTGTGGGTTTAGGAAACAACGGTGCTTTACTTTCTGCCGTTATTCTTGGACTCGTCAACCTTGCTTCTATCCTAGTCTCAACTGCTTTTGTTGATCGGTTTGGACGAAGATTCTTGTTCATTACGGGTGGCATTCTAATGCTTGTCTGCCTGGTAAGCAAATTAAGCAACCATATGTGTATAATATTATTTATATTTATTTATTTATTGTTCTAGTATTTTCATATTCAACTATTAAAAAAAATGAAATAACGACAGAAAGATTGCGGTATTAATGCTTTTTCCGTCTCTAAATTTTCGTCCTTATTTTAATTTCTCCGTCTAGTCGTTATACCTGTGGTATTGGTACTAATAGTTATAATTTGTGTTGACACTTTGAAAGATTGCAGTGTCTGCTTTGCTAGCTTTAACGACTGGTATTCATGGTACAAAGGACATGTCAAAGGGCAACGCAACATTGGTATTGGTTTTACTATGTTTCTATGCCGCAGGTTTTGGTTGGTCTTGGGGCCCACTCACCTGGCTAATTCCAAGTGAAATTTTCCCCATAAAAATCAGAACAACTGGACAAAGTATAGCAGTTGGTGTACAATTCATAATCTTGTTTGTGTTATCACAAACATTCTTGACAATGCTATGCCACTTCAAGTTTGGTGCTTTCTTGTTCTATGCATTTTGGGTTGCAGTGATGACACTATTTATTATTTTCTTTTTACCTGAGACCAAAGGAATTGCTTTGGAGTCAATGTACATTATATGGGGCAAACATTGGTTTTGGCGGAGGTTTGTTAAAGGAGAAGTTGAGAAGGACAATCTTCCATGA
Protein sequence

>MS.gene022491.t1

MAGGGFAIDAPSNGFDGKITLSVIITCIVAASSGLIFGYDIGISGGVTTMVPFLNKFFPDILRKAAGTEVNMYCVYDSQMLTLFTSSLYLAALVSTLVASKVTAAIGRKNTIMLGGAIFLAGAAINGGSENIVMLILGRILLGFGVGFTSQVSAFSTGFQFFLGVGVVAAGCINYATAKHTWGWRLSLGLAVVPAAVMTIGAFLISDTPSSLVERGKIDQARKALQKIRGSSIDVEPELKELIKWTEVSKSVQEEPFMTIFERQYRPHLIMAFAIPFFQQFTGINIVAFYSPNLFQSVGLGNNGALLSAVILGLVNLASILVSTAFVDRFGRRFLFITGGILMLVCLIAVSALLALTTGIHGTKDMSKGNATLVLVLLCFYAAVMTLFIIFFLPETKGIALESMYIIWGKHWFWRRFVKGEVEKDNLP