AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009409

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009409.t1 MTR_3g008170 97.255 510 14 0 1 510 1 510 0.0 1009
MS.gene009409.t1 MTR_3g008160 75.250 501 121 3 1 500 1 499 0.0 777
MS.gene009409.t1 MTR_3g008160 76.940 451 103 1 50 500 1 450 0.0 724
MS.gene009409.t1 MTR_0204s0020 55.761 486 211 4 13 498 11 492 0.0 569
MS.gene009409.t1 MTR_5g082540 56.496 508 214 5 1 505 1 504 0.0 563
MS.gene009409.t1 MTR_0204s0020 55.350 486 210 5 13 498 11 489 0.0 560
MS.gene009409.t1 MTR_5g006070 53.722 497 225 5 16 509 15 509 0.0 559
MS.gene009409.t1 MTR_5g094760 55.280 483 212 4 16 498 20 498 0.0 549
MS.gene009409.t1 MTR_1g038630 56.088 501 213 5 1 498 1 497 0.0 546
MS.gene009409.t1 MTR_7g091690 55.072 483 213 4 16 498 20 498 0.0 544
MS.gene009409.t1 MTR_0204s0040 52.429 494 228 5 13 506 19 505 0.0 542
MS.gene009409.t1 MTR_4g116790 52.314 497 232 5 13 509 17 508 0.0 542
MS.gene009409.t1 MTR_4g116770 52.429 494 228 5 13 506 215 701 0.0 541
MS.gene009409.t1 MTR_3g074410 53.036 494 224 6 18 508 20 508 0.0 531
MS.gene009409.t1 MTR_1g104750 53.213 498 229 4 1 496 1 496 0.0 529
MS.gene009409.t1 MTR_3g074390 53.196 485 220 5 17 498 22 502 0.0 526
MS.gene009409.t1 MTR_1g104770 53.507 499 227 5 1 496 1 497 0.0 526
MS.gene009409.t1 MTR_4g091370 56.495 485 206 3 17 498 17 499 0.0 524
MS.gene009409.t1 MTR_3g093010 55.110 499 217 5 11 505 10 505 0.0 524
MS.gene009409.t1 MTR_5g041550 54.475 514 227 5 1 510 1 511 0.0 523
MS.gene009409.t1 MTR_1g104780 54.339 484 212 7 29 506 28 508 0.0 522
MS.gene009409.t1 MTR_5g006070 53.348 463 211 5 50 509 1 461 3.45e-180 514
MS.gene009409.t1 MTR_0009s0370 51.072 513 242 6 1 509 1 508 4.69e-180 515
MS.gene009409.t1 MTR_1g038600 54.000 500 207 6 1 498 1 479 4.63e-178 509
MS.gene009409.t1 MTR_3g074270 48.687 495 231 5 4 498 5 476 2.57e-171 492
MS.gene009409.t1 MTR_6g087040 50.207 482 236 4 18 498 21 499 1.03e-170 491
MS.gene009409.t1 MTR_6g088375 50.207 482 236 4 18 498 21 499 1.03e-170 491
MS.gene009409.t1 MTR_8g102860 49.489 489 243 4 18 505 21 506 4.53e-169 488
MS.gene009409.t1 MTR_3g023480 50.101 497 242 4 17 509 15 509 3.60e-168 485
MS.gene009409.t1 MTR_4g090600 54.600 500 221 4 2 498 3 499 2.71e-167 483
MS.gene009409.t1 MTR_3g007910 51.724 493 198 7 11 498 10 467 6.20e-167 481
MS.gene009409.t1 MTR_3g093060 53.097 452 205 4 50 496 1 450 6.46e-159 459
MS.gene009409.t1 MTR_8g102860 49.453 457 227 4 50 505 1 454 9.89e-155 449
MS.gene009409.t1 MTR_3g074380 52.958 355 160 5 17 370 20 368 2.58e-124 368
MS.gene009409.t1 MTR_4g116790 50.000 352 172 4 13 364 17 364 8.70e-124 367
MS.gene009409.t1 MTR_3g074320 50.464 323 153 5 188 506 20 339 1.51e-111 334
MS.gene009409.t1 MTR_3g074340 50.155 323 154 5 188 506 20 339 6.05e-111 333
MS.gene009409.t1 MTR_3g074370 50.155 323 154 5 188 507 20 338 8.10e-111 332
MS.gene009409.t1 MTR_3g074400 40.659 455 213 9 50 482 1 420 2.86e-104 318
MS.gene009409.t1 MTR_6g088450 29.828 466 294 11 22 477 57 499 2.62e-55 193
MS.gene009409.t1 MTR_8g103500 28.776 490 315 10 12 490 7 473 5.90e-55 192
MS.gene009409.t1 MTR_3g116240 29.730 481 292 13 27 485 32 488 8.50e-54 189
MS.gene009409.t1 MTR_4g069500 26.810 511 333 9 13 505 21 508 6.77e-52 184
MS.gene009409.t1 MTR_8g077890 29.273 509 315 10 11 500 7 489 7.29e-52 184
MS.gene009409.t1 MTR_4g072030 28.484 488 306 14 27 496 31 493 3.26e-49 177
MS.gene009409.t1 MTR_3g084110 27.607 489 321 11 22 505 27 487 3.18e-48 174
MS.gene009409.t1 MTR_4g069500 27.209 430 293 5 94 505 31 458 6.95e-48 172
MS.gene009409.t1 MTR_1g116660 26.585 489 331 11 22 505 34 499 8.37e-47 170
MS.gene009409.t1 MTR_5g075300 27.328 494 317 10 18 491 14 485 2.46e-46 169
MS.gene009409.t1 MTR_2g013310 27.615 478 310 12 22 490 52 502 3.85e-46 169
MS.gene009409.t1 MTR_5g096000 52.632 171 62 2 11 181 10 161 6.37e-46 163
MS.gene009409.t1 MTR_5g096000 58.197 122 51 0 377 498 177 298 5.49e-38 141
MS.gene009409.t1 MTR_7g446340 26.069 491 324 13 11 491 45 506 9.95e-46 168
MS.gene009409.t1 MTR_6g007340 26.069 491 324 13 11 491 45 506 9.95e-46 168
MS.gene009409.t1 MTR_2g013310 29.923 391 260 8 108 490 45 429 1.15e-44 163
MS.gene009409.t1 MTR_7g005910 26.446 484 319 11 22 496 32 487 2.03e-44 164
MS.gene009409.t1 MTR_3g074330 53.846 156 63 3 4 152 5 158 9.62e-44 153
MS.gene009409.t1 MTR_3g074360 53.846 156 63 3 4 152 5 158 9.62e-44 153
MS.gene009409.t1 MTR_1g116650 26.316 494 319 11 22 508 77 532 1.36e-43 162
MS.gene009409.t1 MTR_3g074310 53.846 156 63 3 4 152 5 158 2.30e-43 152
MS.gene009409.t1 MTR_5g077580 26.011 569 296 15 22 496 25 562 7.85e-42 157
MS.gene009409.t1 MTR_4g077740 26.526 475 313 10 24 485 46 497 1.46e-41 155
MS.gene009409.t1 MTR_5g019870 29.017 417 265 8 100 491 72 482 3.47e-39 149
MS.gene009409.t1 MTR_8g077310 26.793 474 308 11 18 485 42 482 1.22e-37 144
MS.gene009409.t1 MTR_1g022315 27.061 473 300 15 24 486 49 486 1.31e-37 144
MS.gene009409.t1 MTR_1g022315 27.735 393 260 9 103 486 10 387 2.03e-37 142
MS.gene009409.t1 MTR_6g018790 26.931 479 310 14 12 486 98 540 9.23e-37 143
MS.gene009409.t1 MTR_7g082270 26.415 477 317 13 11 486 57 500 2.08e-36 141
MS.gene009409.t1 MTR_8g077310 28.385 384 256 7 108 485 15 385 4.31e-36 138
MS.gene009409.t1 MTR_2g049020 31.287 342 203 10 22 354 25 343 4.37e-36 141
MS.gene009409.t1 MTR_2g048720 31.672 341 202 8 22 355 25 341 1.23e-35 140
MS.gene009409.t1 MTR_8g077300 26.569 478 306 11 17 485 33 474 3.42e-35 137
MS.gene009409.t1 MTR_2g020710 27.374 358 237 9 134 485 51 391 3.93e-34 133
MS.gene009409.t1 MTR_4g118610 25.367 477 320 11 11 485 41 483 5.14e-34 134
MS.gene009409.t1 MTR_2g020710 27.374 358 237 9 134 485 140 480 1.00e-33 133
MS.gene009409.t1 MTR_5g020270 26.059 472 304 12 23 485 50 485 1.44e-32 130
MS.gene009409.t1 MTR_4g013205 25.253 396 277 10 94 485 89 469 3.48e-32 129
MS.gene009409.t1 MTR_5g020270 26.972 393 250 9 108 485 15 385 3.95e-32 127
MS.gene009409.t1 MTR_7g113960 26.554 354 242 7 134 485 118 455 1.14e-31 127
MS.gene009409.t1 MTR_7g113970 25.770 357 251 6 130 485 149 492 1.33e-31 127
MS.gene009409.t1 MTR_4g069500 27.097 310 198 8 205 490 3 308 1.69e-31 124
MS.gene009409.t1 MTR_2g026160 28.612 353 219 8 22 363 26 356 2.35e-31 128
MS.gene009409.t1 MTR_0064s0040 46.479 142 62 3 12 152 13 141 4.40e-31 118
MS.gene009409.t1 MTR_7g082270 27.208 419 272 11 11 429 57 442 5.25e-31 125
MS.gene009409.t1 MTR_7g094450 25.416 421 300 7 67 486 64 471 2.42e-30 124
MS.gene009409.t1 MTR_3g080240 22.944 462 323 11 28 486 98 529 2.44e-28 118
MS.gene009409.t1 MTR_1g038620 37.222 180 86 3 191 362 29 189 8.23e-28 110
MS.gene009409.t1 MTR_1g114280 36.747 166 84 3 339 502 11 157 3.59e-27 107
MS.gene009409.t1 MTR_6g087910 23.907 389 283 7 98 485 107 483 5.51e-27 114
MS.gene009409.t1 MTR_2g026140 28.406 345 204 11 29 363 30 341 6.46e-27 114
MS.gene009409.t1 MTR_5g020270 24.733 469 293 13 23 485 50 464 7.38e-27 113
MS.gene009409.t1 MTR_7g094110 26.989 352 241 8 136 485 135 472 9.67e-27 113
MS.gene009409.t1 MTR_8g077310 27.066 351 225 8 18 367 42 362 9.47e-26 109
MS.gene009409.t1 MTR_4g064820 27.848 395 250 11 23 402 96 470 9.57e-25 107
MS.gene009409.t1 MTR_4g118610 25.061 407 269 11 11 415 41 413 5.11e-22 99.0
MS.gene009409.t1 MTR_2g020710 25.223 337 229 9 85 415 91 410 2.88e-21 96.7
MS.gene009409.t1 MTR_2g020710 26.829 287 187 9 134 414 140 409 4.10e-21 95.9
MS.gene009409.t1 MTR_5g024740 28.455 246 153 6 21 264 2 226 4.91e-19 90.9
MS.gene009409.t1 MTR_7g094110 25.568 352 226 10 136 485 135 452 3.07e-18 87.8
MS.gene009409.t1 MTR_7g113960 27.602 221 148 4 136 355 120 329 3.26e-18 87.0
MS.gene009409.t1 MTR_2g020710 27.572 243 154 8 134 370 140 366 5.25e-18 86.3
MS.gene009409.t1 MTR_7g113970 27.391 230 155 4 130 358 149 367 1.96e-17 84.7
MS.gene009409.t1 MTR_3g118530 29.947 187 128 3 91 276 54 238 2.28e-17 85.9
MS.gene009409.t1 MTR_3g118530 29.947 187 128 3 91 276 54 238 7.94e-17 84.0
MS.gene009409.t1 MTR_8g073100 31.214 173 116 3 90 261 53 223 1.74e-16 83.2
MS.gene009409.t1 MTR_8g073100 28.571 224 142 4 271 482 482 699 1.41e-12 70.5
MS.gene009409.t1 MTR_3g116060 31.579 171 114 3 107 276 68 236 7.47e-16 80.9
MS.gene009409.t1 MTR_3g116060 27.350 234 143 7 266 482 488 711 4.00e-11 66.2
MS.gene009409.t1 MTR_5g044910 28.324 173 121 3 90 261 53 223 2.65e-15 79.3
MS.gene009409.t1 MTR_1g093115 55.556 63 27 1 161 222 1 63 3.32e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009409.t1 AT5G61520 63.821 492 168 4 15 500 16 503 0.0 631
MS.gene009409.t1 AT5G61520 63.319 458 158 4 49 500 2 455 0.0 581
MS.gene009409.t1 AT4G02050 56.338 497 209 5 13 509 17 505 0.0 575
MS.gene009409.t1 AT4G02050 56.338 497 209 5 13 509 17 505 0.0 575
MS.gene009409.t1 AT5G26340 55.823 498 214 6 16 509 16 511 0.0 563
MS.gene009409.t1 AT3G19930 56.189 509 215 5 1 507 1 503 0.0 554
MS.gene009409.t1 AT3G19930 56.189 509 215 5 1 507 1 503 0.0 554
MS.gene009409.t1 AT1G11260 55.489 501 218 3 1 498 1 499 0.0 548
MS.gene009409.t1 AT3G19940 53.521 497 220 5 19 507 21 514 0.0 545
MS.gene009409.t1 AT1G50310 54.286 490 217 4 19 506 21 505 0.0 539
MS.gene009409.t1 AT4G21480 56.531 490 206 4 12 498 12 497 0.0 536
MS.gene009409.t1 AT1G34580 52.079 505 232 6 4 502 5 505 0.0 531
MS.gene009409.t1 AT5G23270 55.165 484 212 4 16 496 17 498 0.0 530
MS.gene009409.t1 AT1G77210 48.871 487 245 4 18 503 21 504 3.45e-171 493
MS.gene009409.t1 AT1G77210 48.871 487 245 4 18 503 21 504 3.45e-171 493
MS.gene009409.t1 AT1G34580 51.852 459 211 6 50 502 1 455 5.65e-168 483
MS.gene009409.t1 AT5G26250 46.869 495 258 5 16 509 15 505 9.74e-158 458
MS.gene009409.t1 AT1G07340 50.100 499 241 6 1 496 1 494 1.11e-153 448
MS.gene009409.t1 AT3G05960 45.455 495 265 5 16 509 14 504 2.61e-151 442
MS.gene009409.t1 AT1G50310 52.661 357 162 4 152 506 11 362 3.42e-131 386
MS.gene009409.t1 AT1G77210 48.442 353 178 4 152 503 6 355 1.27e-116 348
MS.gene009409.t1 AT2G16120 29.151 518 329 7 7 506 10 507 1.24e-58 202
MS.gene009409.t1 AT2G16130 28.937 508 323 7 7 496 10 497 2.78e-56 196
MS.gene009409.t1 AT3G18830 28.831 496 307 10 13 489 31 499 9.93e-55 192
MS.gene009409.t1 AT4G36670 30.550 491 291 15 25 491 18 482 1.68e-52 186
MS.gene009409.t1 AT2G18480 30.316 475 281 13 37 488 36 483 7.12e-51 181
MS.gene009409.t1 AT2G43330 26.050 476 323 9 22 491 30 482 9.02e-45 165
MS.gene009409.t1 AT3G05165 25.895 475 318 8 12 485 19 460 1.43e-42 158
MS.gene009409.t1 AT3G05165 25.895 475 318 8 12 485 19 460 1.43e-42 158
MS.gene009409.t1 AT3G05165 25.895 475 318 8 12 485 19 460 1.43e-42 158
MS.gene009409.t1 AT1G08900 26.847 406 275 7 85 485 25 413 3.33e-42 156
MS.gene009409.t1 AT1G08900 26.847 406 275 7 85 485 67 455 4.69e-42 156
MS.gene009409.t1 AT1G08900 26.847 406 275 7 85 485 67 455 4.69e-42 156
MS.gene009409.t1 AT1G08900 26.847 406 275 7 85 485 59 447 5.63e-42 156
MS.gene009409.t1 AT2G20780 25.466 483 328 12 13 489 45 501 5.91e-40 152
MS.gene009409.t1 AT5G17010 27.216 485 297 11 24 485 48 499 2.79e-39 149
MS.gene009409.t1 AT5G17010 27.216 485 297 11 24 485 48 499 2.79e-39 149
MS.gene009409.t1 AT5G17010 27.216 485 297 11 24 485 48 499 2.79e-39 149
MS.gene009409.t1 AT1G75220 27.331 472 305 12 24 489 48 487 4.00e-39 149
MS.gene009409.t1 AT3G05160 25.840 476 319 8 11 485 9 451 5.36e-39 148
MS.gene009409.t1 AT5G59250 28.690 481 302 12 23 486 98 554 9.74e-39 149
MS.gene009409.t1 AT1G08930 26.441 503 306 14 4 487 33 490 1.28e-38 147
MS.gene009409.t1 AT1G08930 26.441 503 306 14 4 487 33 490 1.28e-38 147
MS.gene009409.t1 AT5G16150 26.955 486 311 14 6 485 92 539 2.74e-38 147
MS.gene009409.t1 AT5G16150 26.955 486 311 14 6 485 92 539 2.74e-38 147
MS.gene009409.t1 AT5G16150 26.955 486 311 14 6 485 92 539 2.74e-38 147
MS.gene009409.t1 AT3G03090 27.856 499 300 14 14 485 34 499 3.61e-38 146
MS.gene009409.t1 AT3G05160 27.228 404 280 6 83 485 12 402 3.96e-38 144
MS.gene009409.t1 AT3G05160 27.228 404 280 6 83 485 12 402 3.96e-38 144
MS.gene009409.t1 AT3G05165 26.116 448 297 8 12 458 19 433 6.85e-38 145
MS.gene009409.t1 AT1G08890 24.375 480 321 10 12 486 16 458 2.33e-37 143
MS.gene009409.t1 AT1G19450 27.673 477 297 13 24 489 49 488 2.70e-37 144
MS.gene009409.t1 AT5G27360 24.686 478 320 7 12 485 24 465 3.76e-37 143
MS.gene009409.t1 AT5G27350 26.971 482 307 13 12 485 17 461 6.47e-37 142
MS.gene009409.t1 AT3G05165 26.241 423 278 8 12 433 19 408 1.06e-36 142
MS.gene009409.t1 AT3G05165 26.241 423 278 8 12 433 19 408 1.06e-36 142
MS.gene009409.t1 AT5G27360 24.059 478 323 6 12 485 72 513 1.60e-36 142
MS.gene009409.t1 AT2G20780 27.062 388 271 9 108 489 62 443 6.64e-36 139
MS.gene009409.t1 AT3G05400 24.580 476 325 12 11 485 14 456 2.61e-35 137
MS.gene009409.t1 AT1G30220 29.609 358 220 9 22 370 27 361 1.06e-34 137
MS.gene009409.t1 AT1G30220 32.787 122 77 2 380 496 447 568 7.88e-11 65.1
MS.gene009409.t1 AT5G27360 26.111 360 246 4 130 485 18 361 1.65e-34 134
MS.gene009409.t1 AT5G27360 26.111 360 246 4 130 485 18 361 1.65e-34 134
MS.gene009409.t1 AT3G05400 27.763 371 253 9 117 485 79 436 5.79e-34 133
MS.gene009409.t1 AT1G08900 26.203 374 254 7 85 453 67 423 8.04e-34 133
MS.gene009409.t1 AT4G04750 27.596 366 247 9 130 491 123 474 1.35e-33 133
MS.gene009409.t1 AT4G04750 27.596 366 247 9 130 491 123 474 1.35e-33 133
MS.gene009409.t1 AT4G04750 27.596 366 247 9 130 491 167 518 1.42e-33 134
MS.gene009409.t1 AT1G54730 24.891 458 310 7 29 485 38 462 6.01e-33 131
MS.gene009409.t1 AT5G18840 26.912 353 243 7 135 485 136 475 3.72e-32 129
MS.gene009409.t1 AT2G48020 26.184 359 251 6 130 487 115 460 7.05e-32 128
MS.gene009409.t1 AT2G48020 26.184 359 251 6 130 487 115 460 7.05e-32 128
MS.gene009409.t1 AT4G04760 25.542 415 284 8 85 491 14 411 1.51e-31 126
MS.gene009409.t1 AT4G04760 25.542 415 284 8 85 491 73 470 3.17e-31 126
MS.gene009409.t1 AT3G05150 25.275 364 248 7 139 491 131 481 3.48e-31 126
MS.gene009409.t1 AT4G16480 30.548 347 208 9 20 355 24 348 4.76e-31 127
MS.gene009409.t1 AT4G16480 30.548 347 208 9 20 355 24 348 4.76e-31 127
MS.gene009409.t1 AT4G16480 30.548 347 208 9 20 355 24 348 4.76e-31 127
MS.gene009409.t1 AT3G05150 25.788 349 244 6 139 485 131 466 6.00e-31 125
MS.gene009409.t1 AT3G05150 25.788 349 244 6 139 485 131 466 6.00e-31 125
MS.gene009409.t1 AT3G05155 25.432 405 282 9 85 486 69 456 1.01e-30 124
MS.gene009409.t1 AT2G35740 30.641 359 210 13 22 367 25 357 3.13e-30 124
MS.gene009409.t1 AT1G54730 24.942 429 288 7 29 456 38 433 2.08e-28 117
MS.gene009409.t1 AT1G05030 23.696 460 318 11 29 485 85 514 7.59e-28 117
MS.gene009409.t1 AT1G54730 23.799 458 294 7 29 485 38 441 8.40e-28 116
MS.gene009409.t1 AT1G05030 24.205 409 298 8 79 485 64 462 1.93e-27 115
MS.gene009409.t1 AT1G79820 23.377 462 317 13 28 485 59 487 1.33e-26 113
MS.gene009409.t1 AT1G79820 23.377 462 317 13 28 485 59 487 1.33e-26 113
MS.gene009409.t1 AT1G08920 23.600 500 327 14 1 485 10 469 9.60e-26 110
MS.gene009409.t1 AT4G04760 24.286 420 278 9 85 490 73 466 1.07e-25 110
MS.gene009409.t1 AT1G08920 23.684 494 327 14 1 485 10 462 4.77e-25 108
MS.gene009409.t1 AT1G67300 24.181 397 283 9 94 485 104 487 9.46e-25 107
MS.gene009409.t1 AT3G20460 24.138 406 286 7 85 485 95 483 1.31e-24 107
MS.gene009409.t1 AT5G27360 23.430 414 277 7 12 421 24 401 1.35e-24 106
MS.gene009409.t1 AT1G67300 23.929 397 283 9 94 485 104 486 4.73e-24 105
MS.gene009409.t1 AT1G67300 23.929 397 283 9 94 485 104 486 4.73e-24 105
MS.gene009409.t1 AT1G54730 23.776 429 272 7 29 456 38 412 1.92e-23 102
MS.gene009409.t1 AT1G67300 24.793 363 252 10 94 452 104 449 1.34e-22 100
MS.gene009409.t1 AT1G67300 24.793 363 252 10 94 452 104 449 1.34e-22 100
MS.gene009409.t1 AT1G67300 24.471 331 236 7 94 422 104 422 3.42e-22 99.4
MS.gene009409.t1 AT1G67300 24.471 331 236 7 94 422 104 422 3.42e-22 99.4
MS.gene009409.t1 AT1G54730 24.227 388 260 7 29 415 38 392 3.92e-21 96.3
MS.gene009409.t1 AT1G54730 24.227 388 260 7 29 415 38 392 3.92e-21 96.3
MS.gene009409.t1 AT1G79820 22.850 407 278 12 28 431 59 432 1.79e-20 94.4
MS.gene009409.t1 AT1G08920 23.326 463 305 14 1 454 10 431 3.98e-20 93.6
MS.gene009409.t1 AT5G17010 23.140 484 258 13 24 485 45 436 3.02e-19 90.5
MS.gene009409.t1 AT3G05155 25.641 273 186 6 85 355 69 326 3.85e-19 89.0
MS.gene009409.t1 AT3G51490 28.235 255 162 7 23 276 4 238 1.30e-18 89.7
MS.gene009409.t1 AT3G51490 28.235 255 162 7 23 276 4 238 1.45e-18 89.7
MS.gene009409.t1 AT3G51490 27.404 208 135 5 286 482 512 714 5.01e-11 65.9
MS.gene009409.t1 AT1G54730 25.305 328 213 6 29 355 38 334 4.88e-18 85.9
MS.gene009409.t1 AT2G48020 26.800 250 169 6 130 378 115 351 2.05e-17 84.7
MS.gene009409.t1 AT1G79820 21.087 460 282 11 28 485 59 439 3.71e-17 84.3
MS.gene009409.t1 AT2G48020 27.155 232 157 4 130 360 115 335 1.25e-16 82.0
MS.gene009409.t1 AT3G51490 31.053 190 127 4 88 276 2 188 1.32e-16 83.6
MS.gene009409.t1 AT3G51490 27.404 208 135 5 286 482 462 664 5.69e-11 65.5
MS.gene009409.t1 AT1G54730 22.938 388 244 7 29 415 38 371 2.66e-16 81.3
MS.gene009409.t1 AT1G54730 24.013 304 202 5 29 331 38 313 5.01e-15 76.6
MS.gene009409.t1 AT1G54730 24.013 304 202 5 29 331 38 313 5.01e-15 76.6
MS.gene009409.t1 AT4G35300 35.762 151 94 3 107 256 70 218 2.01e-14 76.6
MS.gene009409.t1 AT4G35300 35.762 151 94 3 107 256 70 218 2.01e-14 76.6
MS.gene009409.t1 AT4G35300 35.762 151 94 3 107 256 70 218 2.01e-14 76.6
MS.gene009409.t1 AT4G35300 35.762 151 94 3 107 256 70 218 2.01e-14 76.6
MS.gene009409.t1 AT4G35300 35.762 151 94 3 107 256 70 218 2.01e-14 76.6
MS.gene009409.t1 AT4G35300 35.762 151 94 3 107 256 70 218 2.01e-14 76.6
MS.gene009409.t1 AT4G35300 35.762 151 94 3 107 256 70 218 2.01e-14 76.6
MS.gene009409.t1 AT4G35300 35.762 151 94 3 107 256 70 218 2.04e-14 76.6
MS.gene009409.t1 AT4G35300 35.762 151 94 3 107 256 70 218 2.04e-14 76.6
MS.gene009409.t1 AT4G35300 35.762 151 94 3 107 256 70 218 2.04e-14 76.6
MS.gene009409.t1 AT1G20840 29.885 174 119 3 107 279 68 239 2.55e-14 76.3
MS.gene009409.t1 AT1G20840 29.885 174 119 3 107 279 68 239 2.55e-14 76.3

Find 120 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGGCTATTGGGAGTTTC+TGG 0.178636 3.4:-3446834 None:intergenic
CGCCTATACCAATGCTTAAT+TGG 0.213213 3.4:-3446689 None:intergenic
ACATCCTCTCTTTATGTTGC+TGG 0.228502 3.4:+3445876 MS.gene009409:CDS
TAGTAAAGGGTATGCTTATA+TGG 0.276197 3.4:+3447310 MS.gene009409:CDS
GGTCTTGGGTGGTTTGGATT+AGG 0.278010 3.4:-3446851 None:intergenic
GGTGGTTTGGATTAGGCTAT+TGG 0.284538 3.4:-3446844 None:intergenic
GGCTATGACATTGGTATAAC+AGG 0.292811 3.4:+3445732 MS.gene009409:CDS
TGTATTTATGTTGCTGGGTT+TGG 0.292843 3.4:+3447347 MS.gene009409:CDS
TCTTATGTCACCAGAGTCTT+TGG 0.299718 3.4:+3445921 MS.gene009409:CDS
ATGCTTTGCCACTTCAAGTC+TGG 0.305113 3.4:+3447503 MS.gene009409:CDS
GCTATGGGAGGTGTCATATT+TGG 0.306801 3.4:+3445711 MS.gene009409:CDS
TTTCTTCTTCTTTGGAGGTT+GGG 0.312209 3.4:+3447529 MS.gene009409:CDS
GTGGTTTGGATTAGGCTATT+GGG 0.325826 3.4:-3446843 None:intergenic
TGCTTTGCCACTTCAAGTCT+GGG 0.327809 3.4:+3447504 MS.gene009409:CDS
TTTGATGGTCTTGGGTGGTT+TGG 0.332601 3.4:-3446857 None:intergenic
TTTATTGCCCCTCTAAATCT+AGG 0.334602 3.4:-3446657 None:intergenic
GGTGGTGCTGCGTTCCTTGC+CGG 0.346188 3.4:+3445966 MS.gene009409:CDS
TGTGGCAGGAACATTGGTTT+TGG 0.348332 3.4:+3447627 MS.gene009409:CDS
TTCCTTGCCGGCACAGCCCT+TGG 0.352739 3.4:+3445978 MS.gene009409:CDS
TCTGCTAATCTAATCAACTA+TGG 0.363227 3.4:+3446717 MS.gene009409:CDS
CTCTTGTATGATGGCTGCTA+TGG 0.366245 3.4:+3445695 MS.gene009409:CDS
TATCATCTGATTTCATCTTA+AGG 0.371294 3.4:-3445806 None:intergenic
ATGATATGTATTTATGTTGC+TGG 0.372683 3.4:+3447341 MS.gene009409:CDS
TGCTGGGTTTGGATGGTCGT+GGG 0.379669 3.4:+3447358 MS.gene009409:CDS
TGTTGTTCTCTCTTGTATGA+TGG 0.382595 3.4:+3445686 MS.gene009409:CDS
TACAAGAGAGAACAACATAA+AGG 0.385049 3.4:-3445680 None:intergenic
GTTAATAATGGCAGTTGGAT+TGG 0.392274 3.4:+3445614 None:intergenic
TGGAAGAATTTATTCAGAAA+TGG 0.395141 3.4:-3445774 None:intergenic
ATGGCATTACCTAGATTTAG+AGG 0.398789 3.4:+3446648 MS.gene009409:CDS
CGCAAGCCGTCTATCGTTGC+AGG 0.403978 3.4:+3445945 MS.gene009409:CDS
GGAAAAGTGCACCTAGTGTT+AGG 0.409661 3.4:-3446809 None:intergenic
CATTGATCCCTGTCACTTGT+TGG 0.410113 3.4:-3447052 None:intergenic
AGAAAAGATCAAAGGCGGTT+GGG 0.419684 3.4:+3446743 MS.gene009409:CDS
CTTCTTTGGAGGTTGGGTGG+TGG 0.428296 3.4:+3447535 MS.gene009409:CDS
CAATTGTTCTGAAAAGTAAA+GGG 0.433614 3.4:-3447091 None:intergenic
TCCTCTATATCTCTCAGAAA+TGG 0.439787 3.4:+3446629 MS.gene009409:CDS
CCAATTGTTCTGAAAAGTAA+AGG 0.448097 3.4:-3447092 None:intergenic
ATCATGGTGGATTTAGTAAA+GGG 0.450840 3.4:+3447297 MS.gene009409:CDS
ATGTATAGTTGGAGGCATAA+TGG 0.458157 3.4:+3447259 MS.gene009409:CDS
GCCATTTCTGAGAGATATAG+AGG 0.460441 3.4:-3446630 None:intergenic
CCATTGGAGATTAGATCAGC+TGG 0.461723 3.4:+3447416 MS.gene009409:CDS
CTTGCCGGCACAGCCCTTGG+AGG 0.464507 3.4:+3445981 MS.gene009409:CDS
CTGGAACTGCTGCCATGGCT+AGG 0.466467 3.4:-3446779 None:intergenic
GTCATATTTGGCTATGACAT+TGG 0.468383 3.4:+3445723 MS.gene009409:CDS
ACAAGAGAGAACAACATAAA+GGG 0.470220 3.4:-3445679 None:intergenic
TTCCAATTAAGCATTGGTAT+AGG 0.471058 3.4:+3446687 MS.gene009409:CDS
CTTCTTCTTTGGAGGTTGGG+TGG 0.473447 3.4:+3447532 MS.gene009409:CDS
TGCACCTCCAAGGGCTGTGC+CGG 0.482405 3.4:-3445985 None:intergenic
GATCATGGTGGATTTAGTAA+AGG 0.487477 3.4:+3447296 MS.gene009409:CDS
TTGCTGGGTTTGGATGGTCG+TGG 0.495127 3.4:+3447357 MS.gene009409:CDS
TTTGTGTCACAATGTATAGT+TGG 0.495795 3.4:+3447248 MS.gene009409:CDS
GGATGGTCGTGGGGTCCACT+AGG 0.496301 3.4:+3447368 MS.gene009409:CDS
CTCCAAGGGCTGTGCCGGCA+AGG 0.498578 3.4:-3445980 None:intergenic
GCTATTGCCATTACAAGTTG+TGG 0.498771 3.4:-3447017 None:intergenic
CATTGATATGAATGTCGAAC+CGG 0.500730 3.4:-3447168 None:intergenic
TCTTGTATGATGGCTGCTAT+GGG 0.505887 3.4:+3445696 MS.gene009409:CDS
GAAAAGATCAAAGGCGGTTG+GGG 0.516727 3.4:+3446744 MS.gene009409:CDS
GGTCGTGGGGTCCACTAGGT+TGG 0.523423 3.4:+3447372 MS.gene009409:CDS
CAGAAAAGATCAAAGGCGGT+TGG 0.527734 3.4:+3446742 MS.gene009409:CDS
CGTTAAAAGCTGCACCTCCA+AGG 0.527801 3.4:-3445995 None:intergenic
AGACCATCAAAAGGCGAAGC+GGG 0.529020 3.4:+3446869 MS.gene009409:CDS
AGATCAAAGGCGGTTGGGGT+TGG 0.529423 3.4:+3446748 MS.gene009409:CDS
AATGGCTTCCAATTAAGCAT+TGG 0.529992 3.4:+3446681 MS.gene009409:CDS
TGATATGTATTTATGTTGCT+GGG 0.530313 3.4:+3447342 MS.gene009409:CDS
AAATGTGCCACTTGAACAGA+TGG 0.537240 3.4:+3447598 MS.gene009409:CDS
ACTTTCTCCATCTGTTCAAG+TGG 0.537978 3.4:-3447605 None:intergenic
GTGTCACAATGTATAGTTGG+AGG 0.538695 3.4:+3447251 MS.gene009409:CDS
ATATAGACCACAACTTGTAA+TGG 0.539544 3.4:+3447010 MS.gene009409:CDS
TGGAACTGCTGCCATGGCTA+GGG 0.539800 3.4:-3446778 None:intergenic
CTTCTATCATCTGTCATGAC+AGG 0.539953 3.4:+3447134 MS.gene009409:CDS
TGCACCTAGTGTTAGGAAAG+AGG 0.540574 3.4:-3446802 None:intergenic
AGAAAGTGTGGCAGGAACAT+TGG 0.544957 3.4:+3447621 MS.gene009409:CDS
AATACGAGGCGTAGAAGATG+TGG 0.545686 3.4:+3446902 MS.gene009409:CDS
GGTGACATAAGAAGCAAAGA+AGG 0.545956 3.4:-3445910 None:intergenic
AGAAAATCCCAGACTTGAAG+TGG 0.546285 3.4:-3447511 None:intergenic
TTTATGTTGCTGGGTTTGGA+TGG 0.547243 3.4:+3447351 MS.gene009409:CDS
AACCACCCAAGACCATCAAA+AGG 0.547849 3.4:+3446860 MS.gene009409:CDS
CCTAGTGTTAGGAAAGAGGC+TGG 0.548531 3.4:-3446798 None:intergenic
ATGCTCATAGTAGATAAACT+TGG 0.552754 3.4:+3447188 MS.gene009409:CDS
GCTGGGTTTGGATGGTCGTG+GGG 0.552928 3.4:+3447359 MS.gene009409:CDS
GCAGTTCATCTGAAAGATCA+TGG 0.556890 3.4:+3447281 MS.gene009409:CDS
CCAGCTGATCTAATCTCCAA+TGG 0.557191 3.4:-3447416 None:intergenic
ACAGATGGAGAAAGTGTGGC+AGG 0.558422 3.4:+3447613 MS.gene009409:CDS
TCTGTCATGACAGGCATAGT+AGG 0.559364 3.4:+3447143 MS.gene009409:CDS
GCACCACCTGCAACGATAGA+CGG 0.560330 3.4:-3445951 None:intergenic
TTGGCGTGTATCCCTAGCCA+TGG 0.560781 3.4:+3446767 MS.gene009409:CDS
AACGTGTACATGCTCATAGT+CGG 0.562079 3.4:+3446014 MS.gene009409:CDS
AACAGGTGGAGTGACATCAA+TGG 0.564414 3.4:+3445749 MS.gene009409:CDS
AAGTGACGACAGAGTTAATG+AGG 0.566726 3.4:+3447670 MS.gene009409:CDS
CCAGCCTCTTTCCTAACACT+AGG 0.567400 3.4:+3446798 MS.gene009409:CDS
TGGCATTACCTAGATTTAGA+GGG 0.568145 3.4:+3446649 MS.gene009409:CDS
TCATCTTAAGGTATATGTTG+TGG 0.570778 3.4:-3445794 None:intergenic
AGAGGCTGGAACTGCTGCCA+TGG 0.573628 3.4:-3446784 None:intergenic
GTGAACAAAAGAACAATGGC+AGG 0.579074 3.4:+3445652 MS.gene009409:CDS
AAGTAGAACTTGCTTTAGTG+AGG 0.579380 3.4:-3446941 None:intergenic
AGACTTGAAGTGGCAAAGCA+TGG 0.583713 3.4:-3447501 None:intergenic
AGGAGAACCTTGTTCATAGT+CGG 0.592391 3.4:+3447212 MS.gene009409:CDS
ATGACAGGCATAGTAGGTAC+CGG 0.599722 3.4:+3447149 MS.gene009409:CDS
CGGCTTGCGACCAAAGACTC+TGG 0.601335 3.4:-3445931 None:intergenic
GGCTATTGGGAGTTTCTGGT+AGG 0.603131 3.4:-3446830 None:intergenic
TTTAGAGGGGCAATAAACAA+TGG 0.606067 3.4:+3446663 MS.gene009409:CDS
GGCATTACCTAGATTTAGAG+GGG 0.616654 3.4:+3446650 MS.gene009409:CDS
TTGAACAGATGGAGAAAGTG+TGG 0.624733 3.4:+3447609 MS.gene009409:CDS
TATGGAACAGAAAAGATCAA+AGG 0.624964 3.4:+3446735 MS.gene009409:CDS
AATGCCTCCGACTATGAACA+AGG 0.629460 3.4:-3447219 None:intergenic
TGTATGATGGCTGCTATGGG+AGG 0.631318 3.4:+3445699 MS.gene009409:CDS
AAGCCGTCTATCGTTGCAGG+TGG 0.640393 3.4:+3445948 MS.gene009409:CDS
GTTAAAAGCTGCACCTCCAA+GGG 0.641610 3.4:-3445994 None:intergenic
TCATAGTAGATAAACTTGGA+AGG 0.643555 3.4:+3447192 MS.gene009409:CDS
AGATGTGGAAGCAGAACTCG+AGG 0.644676 3.4:+3446917 MS.gene009409:CDS
CCAAGTGAACAAAAGAACAA+TGG 0.648473 3.4:+3445648 MS.gene009409:CDS
AAAACCAGCAACATAAAGAG+AGG 0.649420 3.4:-3445880 None:intergenic
AAGACCATCAAAAGGCGAAG+CGG 0.653340 3.4:+3446868 MS.gene009409:CDS
AGAACCTTGTTCATAGTCGG+AGG 0.654101 3.4:+3447215 MS.gene009409:CDS
CGGGTACTTCAACGAATACG+AGG 0.655625 3.4:+3446888 MS.gene009409:CDS
AATTGTTCTGAAAAGTAAAG+GGG 0.667829 3.4:-3447090 None:intergenic
TATGACATTGGTATAACAGG+TGG 0.678566 3.4:+3445735 MS.gene009409:CDS
CTTGGTACTAACCAACCTAG+TGG 0.681267 3.4:-3447383 None:intergenic
GGAACAGAAAAGATCAAAGG+CGG 0.696154 3.4:+3446738 MS.gene009409:CDS
GTTCATCTGAAAGATCATGG+TGG 0.754590 3.4:+3447284 MS.gene009409:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTGATTGATAATTTCA+GGG - chr3.4:3446193-3446212 None:intergenic 15.0%
!!! TTGATAATTAGTAAAAATCA+AGG - chr3.4:3446218-3446237 None:intergenic 15.0%
!! AAACTTCTTAGATATTTGTT+TGG - chr3.4:3446524-3446543 None:intergenic 20.0%
!! ATTTACGTGTTAAAATTTCA+AGG - chr3.4:3446247-3446266 None:intergenic 20.0%
!!! CTAATTTGATTGATAATTTC+AGG - chr3.4:3446194-3446213 None:intergenic 20.0%
!!! TTTAGTATTTCTATGTGTTT+GGG - chr3.4:3446114-3446133 None:intergenic 20.0%
!!! TTTTAGTATTTCTATGTGTT+TGG - chr3.4:3446115-3446134 None:intergenic 20.0%
! ATGATATGTATTTATGTTGC+TGG + chr3.4:3447341-3447360 MS.gene009409:CDS 25.0%
! GTTATAAATTGTTGCGTATA+AGG + chr3.4:3446336-3446355 MS.gene009409:intron 25.0%
! TATCATCTGATTTCATCTTA+AGG - chr3.4:3445809-3445828 None:intergenic 25.0%
! TGATATGTATTTATGTTGCT+GGG + chr3.4:3447342-3447361 MS.gene009409:CDS 25.0%
! TGGAAGAATTTATTCAGAAA+TGG - chr3.4:3445777-3445796 None:intergenic 25.0%
!! GATATTTGTTTGGTTCAAAT+TGG - chr3.4:3446514-3446533 None:intergenic 25.0%
!! TACTTGACATGATTTTCTAT+CGG - chr3.4:3446401-3446420 None:intergenic 25.0%
!! TTGATCGGATAAATGTTTTT+GGG - chr3.4:3446376-3446395 None:intergenic 25.0%
!! TTTGATCGGATAAATGTTTT+TGG - chr3.4:3446377-3446396 None:intergenic 25.0%
!!! AATTGTTCTGAAAAGTAAAG+GGG - chr3.4:3447093-3447112 None:intergenic 25.0%
!!! CAATTGTTCTGAAAAGTAAA+GGG - chr3.4:3447094-3447113 None:intergenic 25.0%
!!! CTTTACTTTTCAGAACAATT+GGG + chr3.4:3447093-3447112 MS.gene009409:CDS 25.0%
ACAAGAGAGAACAACATAAA+GGG - chr3.4:3445682-3445701 None:intergenic 30.0%
ATATAGACCACAACTTGTAA+TGG + chr3.4:3447010-3447029 MS.gene009409:CDS 30.0%
ATGCTCATAGTAGATAAACT+TGG + chr3.4:3447188-3447207 MS.gene009409:CDS 30.0%
GAAAATCATGTCAAGTAACA+TGG + chr3.4:3446404-3446423 MS.gene009409:intron 30.0%
TACAAGAGAGAACAACATAA+AGG - chr3.4:3445683-3445702 None:intergenic 30.0%
TATGGAACAGAAAAGATCAA+AGG + chr3.4:3446735-3446754 MS.gene009409:CDS 30.0%
TCATAGTAGATAAACTTGGA+AGG + chr3.4:3447192-3447211 MS.gene009409:CDS 30.0%
TCATCTTAAGGTATATGTTG+TGG - chr3.4:3445797-3445816 None:intergenic 30.0%
TCTGCTAATCTAATCAACTA+TGG + chr3.4:3446717-3446736 MS.gene009409:CDS 30.0%
TGACATTGATGTAGATTTCA+CGG - chr3.4:3446293-3446312 None:intergenic 30.0%
TTGAAACTAGTGTGTGAATA+GGG + chr3.4:3446159-3446178 MS.gene009409:intron 30.0%
TTTGTGTCACAATGTATAGT+TGG + chr3.4:3447248-3447267 MS.gene009409:CDS 30.0%
! ACATTATGTCCTAATTTTGC+AGG + chr3.4:3446602-3446621 MS.gene009409:intron 30.0%
! ATAACAAGCAATTTTCTCCT+TGG - chr3.4:3446321-3446340 None:intergenic 30.0%
! GATTTTCTATCGGATTTGAT+CGG - chr3.4:3446391-3446410 None:intergenic 30.0%
! TAGTAAAGGGTATGCTTATA+TGG + chr3.4:3447310-3447329 MS.gene009409:CDS 30.0%
! TTTGAAACTAGTGTGTGAAT+AGG + chr3.4:3446158-3446177 MS.gene009409:intron 30.0%
!! ATCATGGTGGATTTAGTAAA+GGG + chr3.4:3447297-3447316 MS.gene009409:CDS 30.0%
!! CCAATTGTTCTGAAAAGTAA+AGG - chr3.4:3447095-3447114 None:intergenic 30.0%
!! CCTTTACTTTTCAGAACAAT+TGG + chr3.4:3447092-3447111 MS.gene009409:CDS 30.0%
!! TTCCAATTAAGCATTGGTAT+AGG + chr3.4:3446687-3446706 MS.gene009409:CDS 30.0%
!!! TGGTTTTGGAAGAAAATAGT+GGG + chr3.4:3447641-3447660 MS.gene009409:CDS 30.0%
!!! TTGGTTTTGGAAGAAAATAG+TGG + chr3.4:3447640-3447659 MS.gene009409:CDS 30.0%
AAAACCAGCAACATAAAGAG+AGG - chr3.4:3445883-3445902 None:intergenic 35.0%
AAATTGTTGCGTATAAGGCA+AGG + chr3.4:3446341-3446360 MS.gene009409:intron 35.0%
AATGGCTTCCAATTAAGCAT+TGG + chr3.4:3446681-3446700 MS.gene009409:CDS 35.0%
ACATCAATGTCACATTTCCA+AGG + chr3.4:3446301-3446320 MS.gene009409:intron 35.0%
ACATTGATGTAGATTTCACG+GGG - chr3.4:3446291-3446310 None:intergenic 35.0%
ATGGCATTACCTAGATTTAG+AGG + chr3.4:3446648-3446667 MS.gene009409:CDS 35.0%
CATTGATATGAATGTCGAAC+CGG - chr3.4:3447171-3447190 None:intergenic 35.0%
CCAAGTGAACAAAAGAACAA+TGG + chr3.4:3445648-3445667 MS.gene009409:CDS 35.0%
CTATGTGTTTGGGAAGAAAA+GGG - chr3.4:3446104-3446123 None:intergenic 35.0%
GACATTGATGTAGATTTCAC+GGG - chr3.4:3446292-3446311 None:intergenic 35.0%
GTCATATTTGGCTATGACAT+TGG + chr3.4:3445723-3445742 MS.gene009409:CDS 35.0%
TATGACATTGGTATAACAGG+TGG + chr3.4:3445735-3445754 MS.gene009409:CDS 35.0%
TCCAATGGAAAAATCTCACT+TGG - chr3.4:3447404-3447423 None:intergenic 35.0%
TCCTCTATATCTCTCAGAAA+TGG + chr3.4:3446629-3446648 MS.gene009409:CDS 35.0%
TCTATGTGTTTGGGAAGAAA+AGG - chr3.4:3446105-3446124 None:intergenic 35.0%
TGGCATTACCTAGATTTAGA+GGG + chr3.4:3446649-3446668 MS.gene009409:CDS 35.0%
TGTATTTATGTTGCTGGGTT+TGG + chr3.4:3447347-3447366 MS.gene009409:CDS 35.0%
TGTTGTTCTCTCTTGTATGA+TGG + chr3.4:3445686-3445705 MS.gene009409:CDS 35.0%
TTTAGAGGGGCAATAAACAA+TGG + chr3.4:3446663-3446682 MS.gene009409:CDS 35.0%
TTTATTGCCCCTCTAAATCT+AGG - chr3.4:3446660-3446679 None:intergenic 35.0%
! AAGTAGAACTTGCTTTAGTG+AGG - chr3.4:3446944-3446963 None:intergenic 35.0%
! ACCAAGTGAGATTTTTCCAT+TGG + chr3.4:3447400-3447419 MS.gene009409:CDS 35.0%
! ATGTATAGTTGGAGGCATAA+TGG + chr3.4:3447259-3447278 MS.gene009409:CDS 35.0%
! CATTTTTCCAACAAGTGACA+GGG + chr3.4:3447045-3447064 MS.gene009409:CDS 35.0%
! CCATTGTTCTTTTGTTCACT+TGG - chr3.4:3445651-3445670 None:intergenic 35.0%
! CTTTTCAGAACAATTGGGTT+AGG + chr3.4:3447098-3447117 MS.gene009409:CDS 35.0%
! TTTCTTCTTCTTTGGAGGTT+GGG + chr3.4:3447529-3447548 MS.gene009409:CDS 35.0%
!! GATCATGGTGGATTTAGTAA+AGG + chr3.4:3447296-3447315 MS.gene009409:CDS 35.0%
!! TCTGGGATTTTCTTCTTCTT+TGG + chr3.4:3447521-3447540 MS.gene009409:CDS 35.0%
!! TTTTCTTCTTCTTTGGAGGT+TGG + chr3.4:3447528-3447547 MS.gene009409:CDS 35.0%
AACGTGTACATGCTCATAGT+CGG + chr3.4:3446014-3446033 MS.gene009409:CDS 40.0%
AAGTGACGACAGAGTTAATG+AGG + chr3.4:3447670-3447689 MS.gene009409:CDS 40.0%
ACATCCTCTCTTTATGTTGC+TGG + chr3.4:3445876-3445895 MS.gene009409:CDS 40.0%
ACTTTCTCCATCTGTTCAAG+TGG - chr3.4:3447608-3447627 None:intergenic 40.0%
AGAAAAGATCAAAGGCGGTT+GGG + chr3.4:3446743-3446762 MS.gene009409:CDS 40.0%
AGAAAATCCCAGACTTGAAG+TGG - chr3.4:3447514-3447533 None:intergenic 40.0%
AGGAGAACCTTGTTCATAGT+CGG + chr3.4:3447212-3447231 MS.gene009409:CDS 40.0%
ATTAGGCTATTGGGAGTTTC+TGG - chr3.4:3446837-3446856 None:intergenic 40.0%
CGCCTATACCAATGCTTAAT+TGG - chr3.4:3446692-3446711 None:intergenic 40.0%
CTTCTATCATCTGTCATGAC+AGG + chr3.4:3447134-3447153 MS.gene009409:CDS 40.0%
GCAGTTCATCTGAAAGATCA+TGG + chr3.4:3447281-3447300 MS.gene009409:CDS 40.0%
GCTATTGCCATTACAAGTTG+TGG - chr3.4:3447020-3447039 None:intergenic 40.0%
GGAAAGAAAAATTGGCTACC+TGG - chr3.4:3446076-3446095 None:intergenic 40.0%
GGAACAGAAAAGATCAAAGG+CGG + chr3.4:3446738-3446757 MS.gene009409:CDS 40.0%
GGCATTACCTAGATTTAGAG+GGG + chr3.4:3446650-3446669 MS.gene009409:CDS 40.0%
GGCTATGACATTGGTATAAC+AGG + chr3.4:3445732-3445751 MS.gene009409:CDS 40.0%
GGGTGACAGGAAAGAAAAAT+TGG - chr3.4:3446084-3446103 None:intergenic 40.0%
GGTGACATAAGAAGCAAAGA+AGG - chr3.4:3445913-3445932 None:intergenic 40.0%
GTGAACAAAAGAACAATGGC+AGG + chr3.4:3445652-3445671 MS.gene009409:CDS 40.0%
GTGTCACAATGTATAGTTGG+AGG + chr3.4:3447251-3447270 MS.gene009409:CDS 40.0%
GTTCATCTGAAAGATCATGG+TGG + chr3.4:3447284-3447303 MS.gene009409:CDS 40.0%
TCTTATGTCACCAGAGTCTT+TGG + chr3.4:3445921-3445940 MS.gene009409:CDS 40.0%
TCTTGTATGATGGCTGCTAT+GGG + chr3.4:3445696-3445715 MS.gene009409:CDS 40.0%
TTGAACAGATGGAGAAAGTG+TGG + chr3.4:3447609-3447628 MS.gene009409:CDS 40.0%
TTTATGTTGCTGGGTTTGGA+TGG + chr3.4:3447351-3447370 MS.gene009409:CDS 40.0%
! CCTGTCACTTGTTGGAAAAA+TGG - chr3.4:3447047-3447066 None:intergenic 40.0%
! GCCATTTCTGAGAGATATAG+AGG - chr3.4:3446633-3446652 None:intergenic 40.0%
! GGGATTTTCTTCTTCTTTGG+AGG + chr3.4:3447524-3447543 MS.gene009409:CDS 40.0%
! GTGGTTTGGATTAGGCTATT+GGG - chr3.4:3446846-3446865 None:intergenic 40.0%
! TCGACTTTTACTTGGAGTTG+GGG + chr3.4:3446037-3446056 MS.gene009409:CDS 40.0%
!! AAATGTGCCACTTGAACAGA+TGG + chr3.4:3447598-3447617 MS.gene009409:CDS 40.0%
!! ATAGTCGGTCGACTTTTACT+TGG + chr3.4:3446029-3446048 MS.gene009409:CDS 40.0%
!! CCATTTTTCCAACAAGTGAC+AGG + chr3.4:3447044-3447063 MS.gene009409:CDS 40.0%
!! GTCGACTTTTACTTGGAGTT+GGG + chr3.4:3446036-3446055 MS.gene009409:CDS 40.0%
!!! AGTGGCACATTTTTTGTCTG+TGG - chr3.4:3447590-3447609 None:intergenic 40.0%
!!! GCACATTTTTTGTCTGTGGT+AGG - chr3.4:3447586-3447605 None:intergenic 40.0%
AACAGGTGGAGTGACATCAA+TGG + chr3.4:3445749-3445768 MS.gene009409:CDS 45.0%
AACCACCCAAGACCATCAAA+AGG + chr3.4:3446860-3446879 MS.gene009409:CDS 45.0%
AAGACCATCAAAAGGCGAAG+CGG + chr3.4:3446868-3446887 MS.gene009409:CDS 45.0%
AATACGAGGCGTAGAAGATG+TGG + chr3.4:3446902-3446921 MS.gene009409:CDS 45.0%
AATGCCTCCGACTATGAACA+AGG - chr3.4:3447222-3447241 None:intergenic 45.0%
AGAACCTTGTTCATAGTCGG+AGG + chr3.4:3447215-3447234 MS.gene009409:CDS 45.0%
AGACTTGAAGTGGCAAAGCA+TGG - chr3.4:3447504-3447523 None:intergenic 45.0%
ATGACAGGCATAGTAGGTAC+CGG + chr3.4:3447149-3447168 MS.gene009409:CDS 45.0%
CAGAAAAGATCAAAGGCGGT+TGG + chr3.4:3446742-3446761 MS.gene009409:CDS 45.0%
CCAGCTGATCTAATCTCCAA+TGG - chr3.4:3447419-3447438 None:intergenic 45.0%
CCATTGGAGATTAGATCAGC+TGG + chr3.4:3447416-3447435 MS.gene009409:CDS 45.0%
CTCTTGTATGATGGCTGCTA+TGG + chr3.4:3445695-3445714 MS.gene009409:CDS 45.0%
CTTGGTACTAACCAACCTAG+TGG - chr3.4:3447386-3447405 None:intergenic 45.0%
GAAAAGATCAAAGGCGGTTG+GGG + chr3.4:3446744-3446763 MS.gene009409:CDS 45.0%
GAAGAGACATGGCAGTGATA+TGG + chr3.4:3446444-3446463 MS.gene009409:intron 45.0%
GACACTTTCCTGAAGAGACA+TGG + chr3.4:3446433-3446452 MS.gene009409:intron 45.0%
GAGGAACTGCCTGCAAAATT+AGG - chr3.4:3446614-3446633 None:intergenic 45.0%
GTTAAAAGCTGCACCTCCAA+GGG - chr3.4:3445997-3446016 None:intergenic 45.0%
TATCACTGCCATGTCTCTTC+AGG - chr3.4:3446444-3446463 None:intergenic 45.0%
TCTGTCATGACAGGCATAGT+AGG + chr3.4:3447143-3447162 MS.gene009409:CDS 45.0%
TGCACCTAGTGTTAGGAAAG+AGG - chr3.4:3446805-3446824 None:intergenic 45.0%
TTTGGGAAGAAAAGGGTGAC+AGG - chr3.4:3446097-3446116 None:intergenic 45.0%
! AGAAAGTGTGGCAGGAACAT+TGG + chr3.4:3447621-3447640 MS.gene009409:CDS 45.0%
! ATGCTTTGCCACTTCAAGTC+TGG + chr3.4:3447503-3447522 MS.gene009409:CDS 45.0%
! CATTGATCCCTGTCACTTGT+TGG - chr3.4:3447055-3447074 None:intergenic 45.0%
! CTTTTACTTGGAGTTGGGGT+TGG + chr3.4:3446041-3446060 MS.gene009409:CDS 45.0%
! GGAAAAGTGCACCTAGTGTT+AGG - chr3.4:3446812-3446831 None:intergenic 45.0%
! GGTGGTTTGGATTAGGCTAT+TGG - chr3.4:3446847-3446866 None:intergenic 45.0%
! TGCTTTGCCACTTCAAGTCT+GGG + chr3.4:3447504-3447523 MS.gene009409:CDS 45.0%
! TTTGATGGTCTTGGGTGGTT+TGG - chr3.4:3446860-3446879 None:intergenic 45.0%
!! CTTCGCCTTTTGATGGTCTT+GGG - chr3.4:3446868-3446887 None:intergenic 45.0%
!! GCTATGGGAGGTGTCATATT+TGG + chr3.4:3445711-3445730 MS.gene009409:CDS 45.0%
!! GGTCGACTTTTACTTGGAGT+TGG + chr3.4:3446035-3446054 MS.gene009409:CDS 45.0%
!!! TGTGGCAGGAACATTGGTTT+TGG + chr3.4:3447627-3447646 MS.gene009409:CDS 45.0%
AGACCATCAAAAGGCGAAGC+GGG + chr3.4:3446869-3446888 MS.gene009409:CDS 50.0%
AGATGTGGAAGCAGAACTCG+AGG + chr3.4:3446917-3446936 MS.gene009409:CDS 50.0%
CCAGCCTCTTTCCTAACACT+AGG + chr3.4:3446798-3446817 MS.gene009409:CDS 50.0%
CCTAGTGTTAGGAAAGAGGC+TGG - chr3.4:3446801-3446820 None:intergenic 50.0%
CGGGTACTTCAACGAATACG+AGG + chr3.4:3446888-3446907 MS.gene009409:CDS 50.0%
CGTTAAAAGCTGCACCTCCA+AGG - chr3.4:3445998-3446017 None:intergenic 50.0%
TGTATGATGGCTGCTATGGG+AGG + chr3.4:3445699-3445718 MS.gene009409:CDS 50.0%
! ACAGATGGAGAAAGTGTGGC+AGG + chr3.4:3447613-3447632 MS.gene009409:CDS 50.0%
! CTTCTTCTTTGGAGGTTGGG+TGG + chr3.4:3447532-3447551 MS.gene009409:CDS 50.0%
! GGTCTTGGGTGGTTTGGATT+AGG - chr3.4:3446854-3446873 None:intergenic 50.0%
!! GCTTCGCCTTTTGATGGTCT+TGG - chr3.4:3446869-3446888 None:intergenic 50.0%
!! GGCTATTGGGAGTTTCTGGT+AGG - chr3.4:3446833-3446852 None:intergenic 50.0%
!!! TGGGGTTGGTTTTGCTAACC+AGG + chr3.4:3446055-3446074 MS.gene009409:CDS 50.0%
AAGCCGTCTATCGTTGCAGG+TGG + chr3.4:3445948-3445967 MS.gene009409:CDS 55.0%
AGATCAAAGGCGGTTGGGGT+TGG + chr3.4:3446748-3446767 MS.gene009409:CDS 55.0%
GCACCACCTGCAACGATAGA+CGG - chr3.4:3445954-3445973 None:intergenic 55.0%
TGCTGGGTTTGGATGGTCGT+GGG + chr3.4:3447358-3447377 MS.gene009409:CDS 55.0%
TGGAACTGCTGCCATGGCTA+GGG - chr3.4:3446781-3446800 None:intergenic 55.0%
TTGCTGGGTTTGGATGGTCG+TGG + chr3.4:3447357-3447376 MS.gene009409:CDS 55.0%
TTGGCGTGTATCCCTAGCCA+TGG + chr3.4:3446767-3446786 MS.gene009409:CDS 55.0%
! CTTCTTTGGAGGTTGGGTGG+TGG + chr3.4:3447535-3447554 MS.gene009409:CDS 55.0%
! GTACCCGCTTCGCCTTTTGA+TGG - chr3.4:3446875-3446894 None:intergenic 55.0%
!! CGCCTTTTGATGGTCTTGGG+TGG - chr3.4:3446865-3446884 None:intergenic 55.0%
AGAGGCTGGAACTGCTGCCA+TGG - chr3.4:3446787-3446806 None:intergenic 60.0%
CGCAAGCCGTCTATCGTTGC+AGG + chr3.4:3445945-3445964 MS.gene009409:CDS 60.0%
CGGCTTGCGACCAAAGACTC+TGG - chr3.4:3445934-3445953 None:intergenic 60.0%
CTGGAACTGCTGCCATGGCT+AGG - chr3.4:3446782-3446801 None:intergenic 60.0%
GCTGGGTTTGGATGGTCGTG+GGG + chr3.4:3447359-3447378 MS.gene009409:CDS 60.0%
GGATGGTCGTGGGGTCCACT+AGG + chr3.4:3447368-3447387 MS.gene009409:CDS 65.0%
GGTCGTGGGGTCCACTAGGT+TGG + chr3.4:3447372-3447391 MS.gene009409:CDS 65.0%
TGCACCTCCAAGGGCTGTGC+CGG - chr3.4:3445988-3446007 None:intergenic 65.0%
TTCCTTGCCGGCACAGCCCT+TGG + chr3.4:3445978-3445997 MS.gene009409:CDS 65.0%
!! GGTGGTGCTGCGTTCCTTGC+CGG + chr3.4:3445966-3445985 MS.gene009409:CDS 65.0%
CTTGCCGGCACAGCCCTTGG+AGG + chr3.4:3445981-3446000 MS.gene009409:CDS 70.0%
! CTCCAAGGGCTGTGCCGGCA+AGG - chr3.4:3445983-3446002 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 3445621 3447700 3445621 ID=MS.gene009409
chr3.4 mRNA 3445621 3447700 3445621 ID=MS.gene009409.t1;Parent=MS.gene009409
chr3.4 exon 3445621 3446076 3445621 ID=MS.gene009409.t1.exon1;Parent=MS.gene009409.t1
chr3.4 CDS 3445621 3446076 3445621 ID=cds.MS.gene009409.t1;Parent=MS.gene009409.t1
chr3.4 exon 3446624 3447700 3446624 ID=MS.gene009409.t1.exon2;Parent=MS.gene009409.t1
chr3.4 CDS 3446624 3447700 3446624 ID=cds.MS.gene009409.t1;Parent=MS.gene009409.t1
Gene Sequence

>MS.gene009409

ATGGCAGTTGGATTGGCTATAACATGTCCAAGTGAACAAAAGAACAATGGCAGGATAACCCTTTATGTTGTTCTCTCTTGTATGATGGCTGCTATGGGAGGTGTCATATTTGGCTATGACATTGGTATAACAGGTGGAGTGACATCAATGGAACCATTTCTGAATAAATTCTTCCACAACATATACCTTAAGATGAAATCAGATGATAAAGTTAGCAACTATTGCATGTTTGACAGTCAACTACTGACTTCTTTTACATCCTCTCTTTATGTTGCTGGTTTTGTTACTTCCTTCTTTGCTTCTTATGTCACCAGAGTCTTTGGTCGCAAGCCGTCTATCGTTGCAGGTGGTGCTGCGTTCCTTGCCGGCACAGCCCTTGGAGGTGCAGCTTTTAACGTGTACATGCTCATAGTCGGTCGACTTTTACTTGGAGTTGGGGTTGGTTTTGCTAACCAGGTAGCCAATTTTTCTTTCCTGTCACCCTTTTCTTCCCAAACACATAGAAATACTAAAATAGTTTCATAATAATCAAGAGATTTTGAAACTAGTGTGTGAATAGGGAATTTTGTCCCTGAAATTATCAATCAAATTAGTCCTTGATTTTTACTAATTATCAATTTCGTCCTTGAAATTTTAACACGTAAATAAAAAATGAAGATGTATCAATCCCCGTGAAATCTACATCAATGTCACATTTCCAAGGAGAAAATTGCTTGTTATAAATTGTTGCGTATAAGGCAAGGAGTTACTTTCCCAAAAACATTTATCCGATCAAATCCGATAGAAAATCATGTCAAGTAACATGGAGACGTGACACTTTCCTGAAGAGACATGGCAGTGATATGGAGTTCACGTCAAGCGTCACATCTTCACTTAAAGTATAAGTTAATCCAATTTGAACCAAACAAATATCTAAGAAGTTTATCTAATATCTAACATCAATTGTCATGCTCTAATTACAGTTAGACTACAACTTCTTTCACATTATGTCCTAATTTTGCAGGCAGTTCCTCTATATCTCTCAGAAATGGCATTACCTAGATTTAGAGGGGCAATAAACAATGGCTTCCAATTAAGCATTGGTATAGGCGCTTTGTCTGCTAATCTAATCAACTATGGAACAGAAAAGATCAAAGGCGGTTGGGGTTGGCGTGTATCCCTAGCCATGGCAGCAGTTCCAGCCTCTTTCCTAACACTAGGTGCACTTTTCCTACCAGAAACTCCCAATAGCCTAATCCAAACCACCCAAGACCATCAAAAGGCGAAGCGGGTACTTCAACGAATACGAGGCGTAGAAGATGTGGAAGCAGAACTCGAGGACCTCACTAAAGCAAGTTCTACTTCAAAAACAAGTTCACAACAATCATTTAAGATTATATTGAAAAGAAGATATAGACCACAACTTGTAATGGCAATAGCAATACCATTTTTCCAACAAGTGACAGGGATCAATGTCATCGCTTTCTATGCCCCTTTACTTTTCAGAACAATTGGGTTAGGAGAAAGTGCATCGCTTCTATCATCTGTCATGACAGGCATAGTAGGTACCGGTTCGACATTCATATCAATGCTCATAGTAGATAAACTTGGAAGGAGAACCTTGTTCATAGTCGGAGGCATTCAAATGTTTGTGTCACAATGTATAGTTGGAGGCATAATGGCAGTTCATCTGAAAGATCATGGTGGATTTAGTAAAGGGTATGCTTATATGGTTTTGATAATGATATGTATTTATGTTGCTGGGTTTGGATGGTCGTGGGGTCCACTAGGTTGGTTAGTACCAAGTGAGATTTTTCCATTGGAGATTAGATCAGCTGGACAAAGCATCACAGTAGCAGTGAGTTTTCTCTTCACTTTTATTGTTGCTCAGACTTTTCTATCCATGCTTTGCCACTTCAAGTCTGGGATTTTCTTCTTCTTTGGAGGTTGGGTGGTGGTGATGACTGTGTTTGTGTATTGTTTCCTACCACAGACAAAAAATGTGCCACTTGAACAGATGGAGAAAGTGTGGCAGGAACATTGGTTTTGGAAGAAAATAGTGGGAAAAATAAGTGACGACAGAGTTAATGAGGAATTATAA
Protein sequence

>MS.gene009409.t1

MAVGLAITCPSEQKNNGRITLYVVLSCMMAAMGGVIFGYDIGITGGVTSMEPFLNKFFHNIYLKMKSDDKVSNYCMFDSQLLTSFTSSLYVAGFVTSFFASYVTRVFGRKPSIVAGGAAFLAGTALGGAAFNVYMLIVGRLLLGVGVGFANQAVPLYLSEMALPRFRGAINNGFQLSIGIGALSANLINYGTEKIKGGWGWRVSLAMAAVPASFLTLGALFLPETPNSLIQTTQDHQKAKRVLQRIRGVEDVEAELEDLTKASSTSKTSSQQSFKIILKRRYRPQLVMAIAIPFFQQVTGINVIAFYAPLLFRTIGLGESASLLSSVMTGIVGTGSTFISMLIVDKLGRRTLFIVGGIQMFVSQCIVGGIMAVHLKDHGGFSKGYAYMVLIMICIYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFLFTFIVAQTFLSMLCHFKSGIFFFFGGWVVVMTVFVYCFLPQTKNVPLEQMEKVWQEHWFWKKIVGKISDDRVNEEL