AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene78842

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78842.t1 MTR_3g008170 97.451 510 13 0 1 510 1 510 0.0 1012
MS.gene78842.t1 MTR_3g008160 74.901 506 124 3 1 505 1 504 0.0 783
MS.gene78842.t1 MTR_3g008160 76.535 456 106 1 50 505 1 455 0.0 731
MS.gene78842.t1 MTR_0204s0020 55.761 486 211 4 13 498 11 492 0.0 570
MS.gene78842.t1 MTR_5g082540 57.283 508 210 5 1 505 1 504 0.0 569
MS.gene78842.t1 MTR_5g006070 54.545 495 217 6 16 507 15 504 0.0 564
MS.gene78842.t1 MTR_0204s0020 55.350 486 210 5 13 498 11 489 0.0 561
MS.gene78842.t1 MTR_5g094760 54.601 489 218 4 16 504 20 504 0.0 550
MS.gene78842.t1 MTR_1g038630 55.340 515 218 6 1 507 1 511 0.0 548
MS.gene78842.t1 MTR_7g091690 55.072 483 213 4 16 498 20 498 0.0 546
MS.gene78842.t1 MTR_4g116790 53.157 491 226 4 13 503 17 503 0.0 545
MS.gene78842.t1 MTR_0204s0040 52.834 494 226 5 13 506 19 505 0.0 544
MS.gene78842.t1 MTR_4g116770 52.834 494 226 5 13 506 215 701 0.0 544
MS.gene78842.t1 MTR_1g104750 53.414 498 228 4 1 496 1 496 0.0 534
MS.gene78842.t1 MTR_4g091370 57.320 485 202 3 17 498 17 499 0.0 532
MS.gene78842.t1 MTR_3g093010 55.311 499 217 4 11 505 10 506 0.0 531
MS.gene78842.t1 MTR_3g074410 53.306 484 219 5 18 498 20 499 0.0 531
MS.gene78842.t1 MTR_5g041550 54.883 512 225 4 1 508 1 510 0.0 528
MS.gene78842.t1 MTR_1g104770 53.307 499 228 5 1 496 1 497 0.0 528
MS.gene78842.t1 MTR_3g074390 52.990 485 221 5 17 498 22 502 0.0 526
MS.gene78842.t1 MTR_1g104780 53.926 484 215 6 29 509 28 506 0.0 525
MS.gene78842.t1 MTR_5g006070 54.230 461 203 6 50 507 1 456 0.0 519
MS.gene78842.t1 MTR_0009s0370 51.267 513 241 6 1 509 1 508 0.0 518
MS.gene78842.t1 MTR_1g038600 53.307 514 212 7 1 507 1 493 3.57e-179 513
MS.gene78842.t1 MTR_6g087040 50.622 482 234 4 18 498 21 499 2.57e-172 496
MS.gene78842.t1 MTR_6g088375 50.622 482 234 4 18 498 21 499 2.57e-172 496
MS.gene78842.t1 MTR_3g074270 48.394 498 234 5 4 501 5 479 4.83e-171 491
MS.gene78842.t1 MTR_3g023480 50.803 498 238 5 17 509 15 510 9.66e-171 492
MS.gene78842.t1 MTR_8g102860 49.489 489 243 4 18 505 21 506 2.62e-170 491
MS.gene78842.t1 MTR_4g090600 55.200 500 218 4 2 498 3 499 3.90e-170 490
MS.gene78842.t1 MTR_3g007910 51.503 499 202 7 11 504 10 473 2.40e-169 487
MS.gene78842.t1 MTR_3g093060 53.540 452 203 4 50 496 1 450 2.75e-160 463
MS.gene78842.t1 MTR_8g102860 49.453 457 227 4 50 505 1 454 7.43e-156 452
MS.gene78842.t1 MTR_4g116790 50.000 352 172 4 13 364 17 364 6.08e-124 368
MS.gene78842.t1 MTR_3g074380 52.676 355 161 5 17 370 20 368 6.56e-124 367
MS.gene78842.t1 MTR_3g074320 50.313 320 153 4 188 504 20 336 1.65e-111 334
MS.gene78842.t1 MTR_3g074340 50.000 320 154 4 188 504 20 336 5.37e-111 333
MS.gene78842.t1 MTR_3g074370 50.637 314 149 4 188 498 20 330 1.07e-110 332
MS.gene78842.t1 MTR_3g074400 40.659 455 213 9 50 482 1 420 3.29e-104 318
MS.gene78842.t1 MTR_3g116240 30.353 481 289 13 27 485 32 488 9.73e-56 194
MS.gene78842.t1 MTR_6g088450 29.614 466 295 11 22 477 57 499 3.16e-54 191
MS.gene78842.t1 MTR_8g103500 28.367 490 317 10 12 490 7 473 5.82e-54 189
MS.gene78842.t1 MTR_4g069500 27.821 514 328 11 13 507 21 510 2.03e-53 189
MS.gene78842.t1 MTR_8g077890 29.412 510 315 10 11 501 7 490 1.20e-51 183
MS.gene78842.t1 MTR_4g072030 28.689 488 305 14 27 496 31 493 2.45e-50 180
MS.gene78842.t1 MTR_4g069500 28.406 433 288 7 94 507 31 460 1.61e-49 177
MS.gene78842.t1 MTR_3g084110 27.403 489 322 11 22 505 27 487 7.03e-49 176
MS.gene78842.t1 MTR_1g116660 26.585 489 331 11 22 505 34 499 4.28e-48 174
MS.gene78842.t1 MTR_2g013310 27.126 494 319 12 22 507 52 512 2.84e-47 172
MS.gene78842.t1 MTR_5g075300 27.328 494 317 10 18 491 14 485 9.87e-47 170
MS.gene78842.t1 MTR_7g446340 25.562 489 329 11 11 491 45 506 2.35e-46 169
MS.gene78842.t1 MTR_6g007340 25.562 489 329 11 11 491 45 506 2.35e-46 169
MS.gene78842.t1 MTR_5g096000 52.632 171 62 2 11 181 10 161 6.84e-46 163
MS.gene78842.t1 MTR_5g096000 57.031 128 55 0 377 504 177 304 3.38e-39 145
MS.gene78842.t1 MTR_2g013310 29.412 408 267 9 108 507 45 439 1.03e-45 166
MS.gene78842.t1 MTR_7g005910 26.446 484 319 11 22 496 32 487 5.00e-45 165
MS.gene78842.t1 MTR_1g116650 26.477 491 316 11 22 505 77 529 1.31e-44 165
MS.gene78842.t1 MTR_3g074330 53.846 156 63 3 4 152 5 158 9.23e-44 153
MS.gene78842.t1 MTR_3g074360 53.846 156 63 3 4 152 5 158 9.23e-44 153
MS.gene78842.t1 MTR_5g077580 26.714 569 292 15 22 496 25 562 1.12e-43 163
MS.gene78842.t1 MTR_3g074310 53.846 156 63 3 4 152 5 158 2.35e-43 152
MS.gene78842.t1 MTR_4g077740 26.947 475 311 10 24 485 46 497 6.19e-43 159
MS.gene78842.t1 MTR_5g019870 28.637 433 268 9 100 507 72 488 3.76e-39 149
MS.gene78842.t1 MTR_1g022315 26.752 471 304 13 24 486 49 486 1.46e-37 144
MS.gene78842.t1 MTR_1g022315 27.877 391 262 8 103 486 10 387 1.93e-37 142
MS.gene78842.t1 MTR_8g077310 26.947 475 306 11 18 485 42 482 2.36e-37 144
MS.gene78842.t1 MTR_6g018790 26.931 479 310 14 12 486 98 540 1.99e-36 142
MS.gene78842.t1 MTR_7g082270 26.514 479 314 13 11 486 57 500 2.85e-36 141
MS.gene78842.t1 MTR_2g048720 32.258 341 200 8 22 355 25 341 3.61e-36 142
MS.gene78842.t1 MTR_2g049020 31.304 345 199 10 22 354 25 343 4.49e-36 141
MS.gene78842.t1 MTR_8g077310 28.571 385 254 7 108 485 15 385 1.46e-35 137
MS.gene78842.t1 MTR_4g118610 25.996 477 317 11 11 485 41 483 3.13e-35 138
MS.gene78842.t1 MTR_8g077300 25.786 477 311 10 17 485 33 474 1.22e-34 136
MS.gene78842.t1 MTR_2g020710 27.654 358 236 9 134 485 51 391 2.51e-34 134
MS.gene78842.t1 MTR_2g020710 27.654 358 236 9 134 485 140 480 5.98e-34 134
MS.gene78842.t1 MTR_4g069500 27.329 322 212 7 205 507 3 321 9.02e-33 128
MS.gene78842.t1 MTR_7g113960 27.119 354 240 7 134 485 118 455 1.95e-32 130
MS.gene78842.t1 MTR_5g020270 26.170 470 306 11 23 485 50 485 3.89e-32 129
MS.gene78842.t1 MTR_7g113970 26.331 357 249 6 130 485 149 492 4.03e-32 129
MS.gene78842.t1 MTR_4g013205 25.189 397 276 10 94 485 89 469 1.50e-31 127
MS.gene78842.t1 MTR_5g020270 27.110 391 252 8 108 485 15 385 1.56e-31 125
MS.gene78842.t1 MTR_2g026160 30.226 354 212 9 22 363 26 356 2.06e-31 128
MS.gene78842.t1 MTR_0064s0040 46.479 142 62 3 12 152 13 141 4.67e-31 118
MS.gene78842.t1 MTR_7g082270 27.078 421 270 11 11 429 57 442 2.00e-30 124
MS.gene78842.t1 MTR_7g094450 25.416 421 300 7 67 486 64 471 2.17e-30 124
MS.gene78842.t1 MTR_1g038620 42.138 159 73 3 204 362 50 189 1.64e-29 115
MS.gene78842.t1 MTR_1g114280 38.889 162 78 3 339 498 11 153 7.51e-28 109
MS.gene78842.t1 MTR_3g080240 22.727 462 324 11 28 486 98 529 7.90e-28 117
MS.gene78842.t1 MTR_7g094110 27.557 352 239 8 136 485 135 472 1.23e-27 115
MS.gene78842.t1 MTR_6g087910 24.165 389 282 7 98 485 107 483 3.35e-27 114
MS.gene78842.t1 MTR_2g026140 28.986 345 202 11 29 363 30 341 7.49e-27 114
MS.gene78842.t1 MTR_5g020270 24.625 467 296 12 23 485 50 464 2.12e-26 112
MS.gene78842.t1 MTR_8g077310 27.066 351 225 8 18 367 42 362 5.02e-25 107
MS.gene78842.t1 MTR_4g064820 28.212 397 246 11 23 402 96 470 2.65e-24 106
MS.gene78842.t1 MTR_4g118610 25.553 407 267 11 11 415 41 413 8.25e-23 101
MS.gene78842.t1 MTR_2g020710 25.223 337 229 9 85 415 91 410 4.28e-21 95.9
MS.gene78842.t1 MTR_2g020710 26.829 287 187 9 134 414 140 409 7.74e-21 95.1
MS.gene78842.t1 MTR_7g094110 25.568 352 226 9 136 485 135 452 4.47e-19 90.1
MS.gene78842.t1 MTR_7g113960 28.507 221 146 4 136 355 120 329 5.44e-19 89.4
MS.gene78842.t1 MTR_5g024740 28.049 246 154 6 21 264 2 226 1.41e-18 89.7
MS.gene78842.t1 MTR_5g024740 26.271 236 155 5 260 482 474 703 7.65e-11 65.1
MS.gene78842.t1 MTR_2g020710 27.572 243 154 8 134 370 140 366 4.33e-18 86.3
MS.gene78842.t1 MTR_7g113970 27.826 230 154 4 130 358 149 367 7.78e-18 86.3
MS.gene78842.t1 MTR_8g073100 30.952 168 113 3 90 256 53 218 2.15e-16 82.8
MS.gene78842.t1 MTR_8g073100 29.817 218 135 4 277 482 488 699 3.57e-13 72.4
MS.gene78842.t1 MTR_3g118530 30.539 167 113 3 91 256 54 218 3.55e-16 82.0
MS.gene78842.t1 MTR_3g118530 30.539 167 113 3 91 256 54 218 8.21e-16 80.9
MS.gene78842.t1 MTR_3g116060 33.113 151 98 3 107 256 68 216 2.67e-15 79.3
MS.gene78842.t1 MTR_3g116060 27.778 234 142 7 266 482 488 711 7.14e-12 68.6
MS.gene78842.t1 MTR_5g044910 27.976 168 118 3 90 256 53 218 7.53e-15 77.8
MS.gene78842.t1 MTR_1g093115 53.968 63 28 1 161 222 1 63 9.00e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene78842.t1 AT5G61520 63.618 492 169 4 15 500 16 503 0.0 630
MS.gene78842.t1 AT5G61520 63.100 458 159 4 49 500 2 455 0.0 580
MS.gene78842.t1 AT4G02050 56.415 491 210 4 13 503 17 503 0.0 577
MS.gene78842.t1 AT4G02050 56.415 491 210 4 13 503 17 503 0.0 577
MS.gene78842.t1 AT5G26340 55.781 493 213 5 16 505 16 506 0.0 566
MS.gene78842.t1 AT1G11260 56.287 501 214 3 1 498 1 499 0.0 557
MS.gene78842.t1 AT3G19930 55.664 512 222 4 1 510 1 509 0.0 556
MS.gene78842.t1 AT3G19930 55.664 512 222 4 1 510 1 509 0.0 556
MS.gene78842.t1 AT3G19940 54.125 497 217 5 19 507 21 514 0.0 550
MS.gene78842.t1 AT1G50310 54.509 499 215 6 19 508 21 516 0.0 547
MS.gene78842.t1 AT4G21480 57.347 490 202 4 12 498 12 497 0.0 545
MS.gene78842.t1 AT5G23270 55.579 484 210 4 16 496 17 498 0.0 536
MS.gene78842.t1 AT1G34580 52.277 505 231 6 4 502 5 505 0.0 531
MS.gene78842.t1 AT1G77210 48.871 487 245 4 18 503 21 504 1.05e-171 494
MS.gene78842.t1 AT1G77210 48.871 487 245 4 18 503 21 504 1.05e-171 494
MS.gene78842.t1 AT1G34580 52.070 459 210 6 50 502 1 455 1.65e-168 484
MS.gene78842.t1 AT5G26250 47.475 495 255 5 16 509 15 505 6.53e-161 466
MS.gene78842.t1 AT1G07340 50.499 501 236 9 1 496 1 494 6.98e-154 448
MS.gene78842.t1 AT3G05960 45.859 495 263 5 16 509 14 504 1.11e-153 448
MS.gene78842.t1 AT1G50310 53.005 366 160 6 152 508 11 373 7.71e-134 392
MS.gene78842.t1 AT1G77210 48.442 353 178 4 152 503 6 355 5.33e-117 349
MS.gene78842.t1 AT2G16120 29.423 520 329 7 7 508 10 509 5.00e-60 206
MS.gene78842.t1 AT2G16130 29.331 508 321 7 7 496 10 497 8.82e-57 197
MS.gene78842.t1 AT3G18830 29.234 496 305 10 13 489 31 499 1.64e-54 192
MS.gene78842.t1 AT4G36670 30.470 489 294 13 25 491 18 482 8.62e-53 186
MS.gene78842.t1 AT2G18480 30.444 473 283 13 37 488 36 483 3.59e-51 182
MS.gene78842.t1 AT2G43330 26.400 500 330 11 22 510 30 502 5.74e-46 168
MS.gene78842.t1 AT2G20780 25.104 482 331 9 13 489 45 501 2.34e-42 158
MS.gene78842.t1 AT3G05165 26.415 477 313 9 12 485 19 460 4.54e-42 156
MS.gene78842.t1 AT3G05165 26.415 477 313 9 12 485 19 460 4.54e-42 156
MS.gene78842.t1 AT3G05165 26.415 477 313 9 12 485 19 460 4.54e-42 156
MS.gene78842.t1 AT1G08900 26.617 402 281 6 85 485 25 413 2.88e-41 153
MS.gene78842.t1 AT1G08900 26.601 406 276 7 85 485 59 447 3.85e-41 154
MS.gene78842.t1 AT1G08900 26.601 406 276 7 85 485 67 455 4.89e-41 154
MS.gene78842.t1 AT1G08900 26.601 406 276 7 85 485 67 455 4.89e-41 154
MS.gene78842.t1 AT5G17010 27.629 485 295 11 24 485 48 499 8.83e-40 151
MS.gene78842.t1 AT5G17010 27.629 485 295 11 24 485 48 499 8.83e-40 151
MS.gene78842.t1 AT5G17010 27.629 485 295 11 24 485 48 499 8.83e-40 151
MS.gene78842.t1 AT1G75220 27.542 472 304 12 24 489 48 487 2.34e-39 149
MS.gene78842.t1 AT5G59250 29.106 481 300 12 23 486 98 554 2.52e-39 150
MS.gene78842.t1 AT1G08930 25.956 497 316 12 4 487 33 490 3.26e-39 149
MS.gene78842.t1 AT1G08930 25.956 497 316 12 4 487 33 490 3.26e-39 149
MS.gene78842.t1 AT5G16150 27.329 483 313 13 6 485 92 539 5.38e-39 149
MS.gene78842.t1 AT5G16150 27.329 483 313 13 6 485 92 539 5.38e-39 149
MS.gene78842.t1 AT5G16150 27.329 483 313 13 6 485 92 539 5.38e-39 149
MS.gene78842.t1 AT3G03090 26.962 497 307 10 14 485 34 499 1.12e-38 148
MS.gene78842.t1 AT2G20780 26.615 387 274 6 108 489 62 443 1.92e-38 146
MS.gene78842.t1 AT3G05160 25.630 476 320 8 11 485 9 451 3.25e-38 145
MS.gene78842.t1 AT1G08890 24.583 480 320 10 12 486 16 458 1.79e-37 144
MS.gene78842.t1 AT5G27360 24.895 478 319 7 12 485 24 465 2.38e-37 144
MS.gene78842.t1 AT5G27350 27.027 481 308 12 12 485 17 461 2.56e-37 143
MS.gene78842.t1 AT3G05160 26.980 404 281 6 83 485 12 402 3.27e-37 142
MS.gene78842.t1 AT3G05160 26.980 404 281 6 83 485 12 402 3.27e-37 142
MS.gene78842.t1 AT3G05165 26.444 450 293 9 12 458 19 433 5.40e-37 143
MS.gene78842.t1 AT5G27360 24.268 478 322 6 12 485 72 513 5.51e-37 143
MS.gene78842.t1 AT1G19450 27.426 474 302 12 24 489 49 488 7.23e-37 142
MS.gene78842.t1 AT3G05165 26.588 425 274 9 12 433 19 408 7.74e-36 139
MS.gene78842.t1 AT3G05165 26.588 425 274 9 12 433 19 408 7.74e-36 139
MS.gene78842.t1 AT3G05400 24.580 476 325 12 11 485 14 456 2.17e-35 138
MS.gene78842.t1 AT1G30220 29.888 358 219 10 22 370 27 361 5.89e-35 138
MS.gene78842.t1 AT1G30220 33.607 122 76 2 380 496 447 568 2.40e-11 66.6
MS.gene78842.t1 AT5G27360 26.389 360 245 4 130 485 18 361 7.30e-35 134
MS.gene78842.t1 AT5G27360 26.389 360 245 4 130 485 18 361 7.30e-35 134
MS.gene78842.t1 AT5G18840 24.948 477 323 10 11 485 32 475 2.15e-34 135
MS.gene78842.t1 AT3G05400 27.763 371 253 9 117 485 79 436 6.71e-34 133
MS.gene78842.t1 AT1G54730 25.328 458 308 7 29 485 38 462 8.82e-34 133
MS.gene78842.t1 AT4G04750 27.869 366 246 10 130 491 123 474 9.91e-34 133
MS.gene78842.t1 AT4G04750 27.869 366 246 10 130 491 123 474 9.91e-34 133
MS.gene78842.t1 AT4G04750 27.869 366 246 10 130 491 167 518 1.04e-33 134
MS.gene78842.t1 AT2G48020 26.741 359 249 6 130 487 115 460 8.50e-33 130
MS.gene78842.t1 AT2G48020 26.741 359 249 6 130 487 115 460 8.50e-33 130
MS.gene78842.t1 AT1G08900 25.668 374 256 7 85 453 67 423 1.94e-32 129
MS.gene78842.t1 AT3G05150 26.575 365 242 9 139 491 131 481 1.04e-31 128
MS.gene78842.t1 AT3G05150 27.143 350 238 8 139 485 131 466 1.36e-31 127
MS.gene78842.t1 AT3G05150 27.143 350 238 8 139 485 131 466 1.36e-31 127
MS.gene78842.t1 AT3G05155 25.616 406 280 9 85 486 69 456 3.93e-31 125
MS.gene78842.t1 AT4G04760 25.301 415 285 8 85 491 14 411 1.06e-30 124
MS.gene78842.t1 AT4G04760 25.301 415 285 8 85 491 73 470 3.42e-30 123
MS.gene78842.t1 AT4G16480 29.683 347 211 9 20 355 24 348 5.66e-29 120
MS.gene78842.t1 AT4G16480 29.683 347 211 9 20 355 24 348 5.66e-29 120
MS.gene78842.t1 AT4G16480 29.683 347 211 9 20 355 24 348 5.66e-29 120
MS.gene78842.t1 AT2G35740 29.805 359 213 12 22 367 25 357 9.42e-29 120
MS.gene78842.t1 AT1G54730 25.175 429 287 7 29 456 38 433 1.07e-28 118
MS.gene78842.t1 AT1G54730 24.236 458 292 7 29 485 38 441 1.45e-28 118
MS.gene78842.t1 AT1G05030 23.478 460 319 11 29 485 85 514 1.25e-27 116
MS.gene78842.t1 AT1G05030 23.961 409 299 8 79 485 64 462 2.61e-27 115
MS.gene78842.t1 AT1G08920 24.200 500 324 14 1 485 10 469 3.70e-27 114
MS.gene78842.t1 AT1G79820 23.707 464 313 14 28 485 59 487 1.81e-26 112
MS.gene78842.t1 AT1G79820 23.707 464 313 14 28 485 59 487 1.81e-26 112
MS.gene78842.t1 AT1G08920 24.291 494 324 14 1 485 10 462 2.62e-26 112
MS.gene78842.t1 AT3G20460 24.877 406 283 7 85 485 95 483 8.95e-26 110
MS.gene78842.t1 AT4G04760 24.105 419 280 8 85 490 73 466 6.95e-25 107
MS.gene78842.t1 AT1G67300 23.869 398 282 8 94 485 104 486 1.88e-24 106
MS.gene78842.t1 AT1G67300 23.869 398 282 8 94 485 104 486 1.88e-24 106
MS.gene78842.t1 AT5G27360 23.430 414 277 7 12 421 24 401 1.89e-24 106
MS.gene78842.t1 AT1G67300 24.000 400 280 9 94 485 104 487 5.22e-24 105
MS.gene78842.t1 AT1G54730 24.009 429 271 7 29 456 38 412 9.49e-24 103
MS.gene78842.t1 AT1G67300 24.451 364 252 9 94 452 104 449 1.89e-22 100
MS.gene78842.t1 AT1G67300 24.451 364 252 9 94 452 104 449 1.89e-22 100
MS.gene78842.t1 AT1G67300 24.251 334 233 7 94 422 104 422 6.30e-22 98.6
MS.gene78842.t1 AT1G67300 24.251 334 233 7 94 422 104 422 6.30e-22 98.6
MS.gene78842.t1 AT1G54730 24.485 388 259 7 29 415 38 392 1.89e-21 97.1
MS.gene78842.t1 AT1G54730 24.485 388 259 7 29 415 38 392 1.89e-21 97.1
MS.gene78842.t1 AT1G08920 23.758 463 303 14 1 454 10 431 4.77e-21 96.3
MS.gene78842.t1 AT5G17010 23.760 484 255 13 24 485 45 436 1.53e-20 94.7
MS.gene78842.t1 AT1G79820 22.494 409 277 13 28 431 59 432 5.30e-20 93.2
MS.gene78842.t1 AT3G05155 25.547 274 185 6 85 355 69 326 7.14e-19 88.2
MS.gene78842.t1 AT1G54730 25.305 328 213 6 29 355 38 334 9.26e-18 85.1
MS.gene78842.t1 AT2G48020 27.200 250 168 6 130 378 115 351 9.41e-18 85.5
MS.gene78842.t1 AT3G51490 27.843 255 163 7 23 276 4 238 1.06e-17 87.0
MS.gene78842.t1 AT3G51490 27.843 255 163 7 23 276 4 238 1.26e-17 86.7
MS.gene78842.t1 AT3G51490 27.885 208 134 5 286 482 512 714 2.33e-11 67.0
MS.gene78842.t1 AT1G79820 20.996 462 280 12 28 485 59 439 3.92e-17 84.3
MS.gene78842.t1 AT2G48020 27.586 232 156 4 130 360 115 335 6.51e-17 82.8
MS.gene78842.t1 AT1G54730 23.196 388 243 7 29 415 38 371 1.46e-16 82.0
MS.gene78842.t1 AT3G51490 30.526 190 128 4 88 276 2 188 9.64e-16 80.9
MS.gene78842.t1 AT3G51490 27.885 208 134 5 286 482 462 664 2.32e-11 67.0
MS.gene78842.t1 AT1G54730 24.013 304 202 5 29 331 38 313 1.07e-14 75.9
MS.gene78842.t1 AT1G54730 24.013 304 202 5 29 331 38 313 1.07e-14 75.9
MS.gene78842.t1 AT1G20840 32.450 151 99 3 107 256 68 216 1.86e-14 76.6
MS.gene78842.t1 AT1G20840 32.450 151 99 3 107 256 68 216 1.86e-14 76.6
MS.gene78842.t1 AT4G35300 35.099 151 95 3 107 256 70 218 5.63e-14 75.1
MS.gene78842.t1 AT4G35300 35.099 151 95 3 107 256 70 218 5.63e-14 75.1
MS.gene78842.t1 AT4G35300 35.099 151 95 3 107 256 70 218 5.63e-14 75.1
MS.gene78842.t1 AT4G35300 35.099 151 95 3 107 256 70 218 5.63e-14 75.1
MS.gene78842.t1 AT4G35300 35.099 151 95 3 107 256 70 218 5.63e-14 75.1
MS.gene78842.t1 AT4G35300 35.099 151 95 3 107 256 70 218 5.63e-14 75.1
MS.gene78842.t1 AT4G35300 35.099 151 95 3 107 256 70 218 5.63e-14 75.1
MS.gene78842.t1 AT4G35300 35.099 151 95 3 107 256 70 218 5.83e-14 75.1
MS.gene78842.t1 AT4G35300 35.099 151 95 3 107 256 70 218 5.83e-14 75.1
MS.gene78842.t1 AT4G35300 35.099 151 95 3 107 256 70 218 5.83e-14 75.1

Find 119 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGGCTATTGGGAGTTTC+TGG 0.178636 3.1:-3759145 None:intergenic
ACATCTTCTCTTTATGTTGC+TGG 0.228502 3.1:+3758087 MS.gene78842:CDS
CGCCAATACCAATGCTTAAT+TGG 0.231469 3.1:-3759000 None:intergenic
GCTATGGGAGGTGTCATATT+TGG 0.269298 3.1:+3757922 MS.gene78842:CDS
AAGTAAAGGGTATGCTTATA+TGG 0.276197 3.1:+3759621 MS.gene78842:CDS
ACTGGTTTGGATTAGGCTAT+TGG 0.290646 3.1:-3759155 None:intergenic
TGTATTTATGTTGCTGGGTT+TGG 0.292843 3.1:+3759658 MS.gene78842:CDS
TCTTATGTCACCAGAGTCTT+TGG 0.299718 3.1:+3758132 MS.gene78842:CDS
ATGCTTTGCCACTTCAAGTC+TGG 0.305113 3.1:+3759814 MS.gene78842:CDS
TTTCTTCTTCTTTGGAGGTT+GGG 0.312209 3.1:+3759840 MS.gene78842:CDS
GGTTATGACATTGGTATAAC+AGG 0.315465 3.1:+3757943 MS.gene78842:CDS
CTGGTTTGGATTAGGCTATT+GGG 0.325835 3.1:-3759154 None:intergenic
TGCTTTGCCACTTCAAGTCT+GGG 0.327809 3.1:+3759815 MS.gene78842:CDS
CCAGCTGATCTAATCTCTAA+TGG 0.335333 3.1:-3759727 None:intergenic
GATCTTGACTGGTTTGGATT+AGG 0.340711 3.1:-3759162 None:intergenic
TTTGATGATCTTGACTGGTT+TGG 0.342410 3.1:-3759168 None:intergenic
TGTGGCAGGAACATTGGTTT+TGG 0.348332 3.1:+3759938 MS.gene78842:CDS
TTTATTGCCCCTCTAAATCT+TGG 0.355509 3.1:-3758968 None:intergenic
TCTGCTAATCTAATCAACTA+TGG 0.363227 3.1:+3759028 MS.gene78842:CDS
CTCTTGTATGATGGCTGCTA+TGG 0.366245 3.1:+3757906 MS.gene78842:CDS
TATCATCTGATTTCATCTTA+AGG 0.371294 3.1:-3758017 None:intergenic
ATGATATGTATTTATGTTGC+TGG 0.372683 3.1:+3759652 MS.gene78842:CDS
TGCTGGGTTTGGATGGTCGT+GGG 0.379669 3.1:+3759669 MS.gene78842:CDS
TGTTGTTCTCTCTTGTATGA+TGG 0.382595 3.1:+3757897 MS.gene78842:CDS
TACAAGAGAGAACAACATAA+AGG 0.385049 3.1:-3757891 None:intergenic
GTTAATAATGGCAGTTGGAT+TGG 0.392274 3.1:+3757825 None:intergenic
TGGAAGAATTTATTCAGAAA+TGG 0.395141 3.1:-3757985 None:intergenic
CGCAAGCCGTCTATCGTTGC+AGG 0.403978 3.1:+3758156 MS.gene78842:CDS
ATGGCATTGCCAAGATTTAG+AGG 0.405679 3.1:+3758959 MS.gene78842:CDS
CATTGATCCCTGTCACTTGT+TGG 0.410113 3.1:-3759363 None:intergenic
AGAAAAGATTGAAGGCGGTT+GGG 0.414654 3.1:+3759054 MS.gene78842:CDS
GAGTTAAAGAGGAATTATAA+TGG 0.417647 3.1:+3759992 MS.gene78842:CDS
TTCCAATTAAGCATTGGTAT+TGG 0.424406 3.1:+3758998 MS.gene78842:CDS
CTTCTTTGGAGGTTGGGTGG+TGG 0.428296 3.1:+3759846 MS.gene78842:CDS
TGGGAGTTTCTGGTAGGAAA+AGG 0.431315 3.1:-3759135 None:intergenic
GGAAAAGGGCACCTAGTGTT+AGG 0.431547 3.1:-3759120 None:intergenic
CAATTGTTCTGAAAAGTAAA+GGG 0.433614 3.1:-3759402 None:intergenic
TTCCTCGCCGGTACAGCCCT+TGG 0.434983 3.1:+3758189 MS.gene78842:CDS
TCCTCTATATCTCTCAGAAA+TGG 0.439787 3.1:+3758940 MS.gene78842:CDS
ATCATGGTGGATTAAGTAAA+GGG 0.444020 3.1:+3759608 MS.gene78842:CDS
CCATTAGAGATTAGATCAGC+TGG 0.446718 3.1:+3759727 MS.gene78842:CDS
CCAATTGTTCTGAAAAGTAA+AGG 0.448097 3.1:-3759403 None:intergenic
GCCATTTCTGAGAGATATAG+AGG 0.460441 3.1:-3758941 None:intergenic
CTGGAACTGCTGCCATGGCT+AGG 0.466467 3.1:-3759090 None:intergenic
ACAAGAGAGAACAACATAAA+GGG 0.470220 3.1:-3757890 None:intergenic
CTTCTTCTTTGGAGGTTGGG+TGG 0.473447 3.1:+3759843 MS.gene78842:CDS
GGGAGTTTCTGGTAGGAAAA+GGG 0.478562 3.1:-3759134 None:intergenic
GATCATGGTGGATTAAGTAA+AGG 0.480657 3.1:+3759607 MS.gene78842:CDS
GTCATATTTGGTTATGACAT+TGG 0.486865 3.1:+3757934 MS.gene78842:CDS
CAGAAAAGATTGAAGGCGGT+TGG 0.490763 3.1:+3759053 MS.gene78842:CDS
TTGCTGGGTTTGGATGGTCG+TGG 0.495127 3.1:+3759668 MS.gene78842:CDS
TTTGTGTCACAATGTATAGT+TGG 0.495795 3.1:+3759559 MS.gene78842:CDS
GGATGGTCGTGGGGTCCACT+AGG 0.496301 3.1:+3759679 MS.gene78842:CDS
GAAAAGATTGAAGGCGGTTG+GGG 0.500122 3.1:+3759055 MS.gene78842:CDS
CTCGCCGGTACAGCCCTTGG+AGG 0.500915 3.1:+3758192 MS.gene78842:CDS
TCTTGTATGATGGCTGCTAT+GGG 0.505887 3.1:+3757907 MS.gene78842:CDS
TGCACCTCCAAGGGCTGTAC+CGG 0.512492 3.1:-3758196 None:intergenic
AAGTGACGACAGAGTTAAAG+AGG 0.516097 3.1:+3759981 MS.gene78842:CDS
AGATTGAAGGCGGTTGGGGT+TGG 0.519430 3.1:+3759059 MS.gene78842:CDS
GGTGGTGCTGCGTTCCTCGC+CGG 0.519549 3.1:+3758177 MS.gene78842:CDS
GGTCGTGGGGTCCACTAGGT+TGG 0.523423 3.1:+3759683 MS.gene78842:CDS
CGTTAAAAGCTGCACCTCCA+AGG 0.527801 3.1:-3758206 None:intergenic
AATGGCTTCCAATTAAGCAT+TGG 0.529992 3.1:+3758992 MS.gene78842:CDS
TGATATGTATTTATGTTGCT+GGG 0.530313 3.1:+3759653 MS.gene78842:CDS
ATGTATAGTTGGAGGCATCA+TGG 0.534543 3.1:+3759570 MS.gene78842:CDS
AAATGTGCCACTTGAACAGA+TGG 0.537240 3.1:+3759909 MS.gene78842:CDS
ACTTTCTCCATCTGTTCAAG+TGG 0.537978 3.1:-3759916 None:intergenic
GTGTCACAATGTATAGTTGG+AGG 0.538695 3.1:+3759562 MS.gene78842:CDS
ATATAGACCACAACTTGTAA+TGG 0.539544 3.1:+3759321 MS.gene78842:CDS
TGGAACTGCTGCCATGGCTA+GGG 0.539800 3.1:-3759089 None:intergenic
CTTCTATCATCTGTCATGAC+AGG 0.539953 3.1:+3759445 MS.gene78842:CDS
GCTATTGCCATTACAAGTTG+TGG 0.541220 3.1:-3759328 None:intergenic
GGCACCTAGTGTTAGGAAAG+AGG 0.543013 3.1:-3759113 None:intergenic
AGAAAGTGTGGCAGGAACAT+TGG 0.544957 3.1:+3759932 MS.gene78842:CDS
AACCAGTCAAGATCATCAAA+AGG 0.545179 3.1:+3759171 MS.gene78842:CDS
ATGACAGGCATAGTAGGTAC+TGG 0.545572 3.1:+3759460 MS.gene78842:CDS
GGTGACATAAGAAGCAAAGA+AGG 0.545956 3.1:-3758121 None:intergenic
AGAAAATCCCAGACTTGAAG+TGG 0.546285 3.1:-3759822 None:intergenic
TATGGAACAGAAAAGATTGA+AGG 0.546896 3.1:+3759046 MS.gene78842:CDS
CTTGCACATCTTCTACGCCT+CGG 0.547119 3.1:-3759216 None:intergenic
TTTATGTTGCTGGGTTTGGA+TGG 0.547243 3.1:+3759662 MS.gene78842:CDS
CCTAGTGTTAGGAAAGAGGC+TGG 0.548531 3.1:-3759109 None:intergenic
ATGCTCATAGTAGATAAACT+TGG 0.552754 3.1:+3759499 MS.gene78842:CDS
GCTGGGTTTGGATGGTCGTG+GGG 0.552928 3.1:+3759670 MS.gene78842:CDS
GCAGTTCATCTGAAAGATCA+TGG 0.556890 3.1:+3759592 MS.gene78842:CDS
ACAGATGGAGAAAGTGTGGC+AGG 0.558422 3.1:+3759924 MS.gene78842:CDS
TCTGTCATGACAGGCATAGT+AGG 0.559364 3.1:+3759454 MS.gene78842:CDS
GCACCACCTGCAACGATAGA+CGG 0.560330 3.1:-3758162 None:intergenic
TTGGCGTGTATCCCTAGCCA+TGG 0.560781 3.1:+3759078 MS.gene78842:CDS
AACAGGTGGAGTGACATCAA+TGG 0.564414 3.1:+3757960 MS.gene78842:CDS
CCAGCCTCTTTCCTAACACT+AGG 0.567400 3.1:+3759109 MS.gene78842:CDS
TCATCTTAAGGTATATGTTG+TGG 0.570778 3.1:-3758005 None:intergenic
AGAGGCTGGAACTGCTGCCA+TGG 0.573628 3.1:-3759095 None:intergenic
AACGTGTACATGCTTATAGT+CGG 0.575439 3.1:+3758225 MS.gene78842:CDS
TGGCATTGCCAAGATTTAGA+GGG 0.578777 3.1:+3758960 MS.gene78842:CDS
GTGAACAAAAGAACAATGGC+AGG 0.579074 3.1:+3757863 MS.gene78842:CDS
AAGTAGAACTTGCTTTAGTG+AGG 0.579380 3.1:-3759252 None:intergenic
AGACTTGAAGTGGCAAAGCA+TGG 0.583713 3.1:-3759812 None:intergenic
AGGAGAACCTTGTTCATAGT+CGG 0.592391 3.1:+3759523 MS.gene78842:CDS
TTTAGAGGGGCAATAAACAA+TGG 0.599246 3.1:+3758974 MS.gene78842:CDS
CGGCTTGCGACCAAAGACTC+TGG 0.601335 3.1:-3758142 None:intergenic
GGCTATTGGGAGTTTCTGGT+AGG 0.603131 3.1:-3759141 None:intergenic
TTGAACAGATGGAGAAAGTG+TGG 0.624733 3.1:+3759920 MS.gene78842:CDS
TATGACATTGGTATAACAGG+TGG 0.625652 3.1:+3757946 MS.gene78842:CDS
GGCATTGCCAAGATTTAGAG+GGG 0.627286 3.1:+3758961 MS.gene78842:CDS
AATGCCTCCGACTATGAACA+AGG 0.629460 3.1:-3759530 None:intergenic
TGTATGATGGCTGCTATGGG+AGG 0.631318 3.1:+3757910 MS.gene78842:CDS
AAGCCGTCTATCGTTGCAGG+TGG 0.640393 3.1:+3758159 MS.gene78842:CDS
GTTAAAAGCTGCACCTCCAA+GGG 0.641610 3.1:-3758205 None:intergenic
CGAATACTTCAACGAATCCG+AGG 0.642512 3.1:+3759199 MS.gene78842:CDS
TCATAGTAGATAAACTTGGA+AGG 0.643555 3.1:+3759503 MS.gene78842:CDS
CCAAGTGAACAAAAGAACAA+TGG 0.648473 3.1:+3757859 MS.gene78842:CDS
AGAACCTTGTTCATAGTCGG+AGG 0.654101 3.1:+3759526 MS.gene78842:CDS
TGTACATGCTTATAGTCGGT+CGG 0.655575 3.1:+3758229 MS.gene78842:CDS
CTCCAAGGGCTGTACCGGCG+AGG 0.656307 3.1:-3758191 None:intergenic
AATTGTTCTGAAAAGTAAAG+GGG 0.667829 3.1:-3759401 None:intergenic
CTTGGTACTAACCAACCTAG+TGG 0.681267 3.1:-3759694 None:intergenic
GGAACAGAAAAGATTGAAGG+CGG 0.690609 3.1:+3759049 MS.gene78842:CDS
GTTCATCTGAAAGATCATGG+TGG 0.754590 3.1:+3759595 MS.gene78842:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTCAATATAATCTTAAA+TGG - chr3.1:3759298-3759317 None:intergenic 15.0%
!!! TTGATAATTAGTAAAAATCA+AGG - chr3.1:3758513-3758532 None:intergenic 15.0%
!! ATTTACGTGTTAAAATTTCA+AGG - chr3.1:3758542-3758561 None:intergenic 20.0%
!! GATAAACTTAGATATTTGTT+TGG - chr3.1:3758822-3758841 None:intergenic 20.0%
!! TATATAAATTGTTGGGTATA+AGG + chr3.1:3758632-3758651 MS.gene78842:intron 20.0%
!!! TAATTTGATTGATAGTTTCA+GGG - chr3.1:3758488-3758507 None:intergenic 20.0%
!!! TGCTTGTTATATAAATTGTT+GGG + chr3.1:3758625-3758644 MS.gene78842:intron 20.0%
!!! TTGCTTGTTATATAAATTGT+TGG + chr3.1:3758624-3758643 MS.gene78842:intron 20.0%
! ATGATATGTATTTATGTTGC+TGG + chr3.1:3759652-3759671 MS.gene78842:CDS 25.0%
! TAGTATTTCTCTAAGTGTTT+GGG - chr3.1:3758325-3758344 None:intergenic 25.0%
! TATCATCTGATTTCATCTTA+AGG - chr3.1:3758020-3758039 None:intergenic 25.0%
! TGATATGTATTTATGTTGCT+GGG + chr3.1:3759653-3759672 MS.gene78842:CDS 25.0%
! TGGAAGAATTTATTCAGAAA+TGG - chr3.1:3757988-3758007 None:intergenic 25.0%
! TTAGTATTTCTCTAAGTGTT+TGG - chr3.1:3758326-3758345 None:intergenic 25.0%
!! CTAATTTGATTGATAGTTTC+AGG - chr3.1:3758489-3758508 None:intergenic 25.0%
!! TACTTGACATGATTTTCTAT+TGG - chr3.1:3758697-3758716 None:intergenic 25.0%
!!! AATTGTTCTGAAAAGTAAAG+GGG - chr3.1:3759404-3759423 None:intergenic 25.0%
!!! CAATTGTTCTGAAAAGTAAA+GGG - chr3.1:3759405-3759424 None:intergenic 25.0%
!!! CTTTACTTTTCAGAACAATT+GGG + chr3.1:3759404-3759423 MS.gene78842:CDS 25.0%
ACAAGAGAGAACAACATAAA+GGG - chr3.1:3757893-3757912 None:intergenic 30.0%
ATATAGACCACAACTTGTAA+TGG + chr3.1:3759321-3759340 MS.gene78842:CDS 30.0%
ATGCTCATAGTAGATAAACT+TGG + chr3.1:3759499-3759518 MS.gene78842:CDS 30.0%
GTCATATTTGGTTATGACAT+TGG + chr3.1:3757934-3757953 MS.gene78842:CDS 30.0%
TACAAGAGAGAACAACATAA+AGG - chr3.1:3757894-3757913 None:intergenic 30.0%
TATGGAACAGAAAAGATTGA+AGG + chr3.1:3759046-3759065 MS.gene78842:CDS 30.0%
TCATAGTAGATAAACTTGGA+AGG + chr3.1:3759503-3759522 MS.gene78842:CDS 30.0%
TCATCTTAAGGTATATGTTG+TGG - chr3.1:3758008-3758027 None:intergenic 30.0%
TCTAATGGAAAAATCTCACT+TGG - chr3.1:3759715-3759734 None:intergenic 30.0%
TCTGCTAATCTAATCAACTA+TGG + chr3.1:3759028-3759047 MS.gene78842:CDS 30.0%
TTTGTGTCACAATGTATAGT+TGG + chr3.1:3759559-3759578 MS.gene78842:CDS 30.0%
! AAGTAAAGGGTATGCTTATA+TGG + chr3.1:3759621-3759640 MS.gene78842:CDS 30.0%
! ACATTATGTCCTAATTTTGC+AGG + chr3.1:3758913-3758932 MS.gene78842:intron 30.0%
! ATAACAAGCAATTTTCTCCT+TGG - chr3.1:3758615-3758634 None:intergenic 30.0%
! ATTTTCTATTGGATTCGATC+AGG - chr3.1:3758686-3758705 None:intergenic 30.0%
! GATATTTGTTTGGTTCAGAT+TGG - chr3.1:3758812-3758831 None:intergenic 30.0%
! TTTTCTATTGGATTCGATCA+GGG - chr3.1:3758685-3758704 None:intergenic 30.0%
!! ATCATGGTGGATTAAGTAAA+GGG + chr3.1:3759608-3759627 MS.gene78842:CDS 30.0%
!! CCAATTGTTCTGAAAAGTAA+AGG - chr3.1:3759406-3759425 None:intergenic 30.0%
!! CCTTTACTTTTCAGAACAAT+TGG + chr3.1:3759403-3759422 MS.gene78842:CDS 30.0%
!! TTCCAATTAAGCATTGGTAT+TGG + chr3.1:3758998-3759017 MS.gene78842:CDS 30.0%
!!! TGGTTTTGGAAGAAAATAGT+GGG + chr3.1:3759952-3759971 MS.gene78842:CDS 30.0%
!!! TTGGTTTTGGAAGAAAATAG+TGG + chr3.1:3759951-3759970 MS.gene78842:CDS 30.0%
AAATTGTTGGGTATAAGGCA+AGG + chr3.1:3758637-3758656 MS.gene78842:intron 35.0%
AACCAGTCAAGATCATCAAA+AGG + chr3.1:3759171-3759190 MS.gene78842:CDS 35.0%
AACGTGTACATGCTTATAGT+CGG + chr3.1:3758225-3758244 MS.gene78842:CDS 35.0%
AATGGCTTCCAATTAAGCAT+TGG + chr3.1:3758992-3759011 MS.gene78842:CDS 35.0%
ACATCTTCTCTTTATGTTGC+TGG + chr3.1:3758087-3758106 MS.gene78842:CDS 35.0%
CCAAGTGAACAAAAGAACAA+TGG + chr3.1:3757859-3757878 MS.gene78842:CDS 35.0%
CTAAGTGTTTGGGAAGAAAA+GGG - chr3.1:3758315-3758334 None:intergenic 35.0%
GAAAATCATGTCAAGTAACG+TGG + chr3.1:3758700-3758719 MS.gene78842:intron 35.0%
GGTTATGACATTGGTATAAC+AGG + chr3.1:3757943-3757962 MS.gene78842:CDS 35.0%
TATGACATTGGTATAACAGG+TGG + chr3.1:3757946-3757965 MS.gene78842:CDS 35.0%
TCCTCTATATCTCTCAGAAA+TGG + chr3.1:3758940-3758959 MS.gene78842:CDS 35.0%
TCTAAGTGTTTGGGAAGAAA+AGG - chr3.1:3758316-3758335 None:intergenic 35.0%
TGACATTGACGTAGATTTCA+CGG - chr3.1:3758587-3758606 None:intergenic 35.0%
TGTATTTATGTTGCTGGGTT+TGG + chr3.1:3759658-3759677 MS.gene78842:CDS 35.0%
TGTTGTTCTCTCTTGTATGA+TGG + chr3.1:3757897-3757916 MS.gene78842:CDS 35.0%
TTTAGAGGGGCAATAAACAA+TGG + chr3.1:3758974-3758993 MS.gene78842:CDS 35.0%
TTTATTGCCCCTCTAAATCT+TGG - chr3.1:3758971-3758990 None:intergenic 35.0%
! AAGTAGAACTTGCTTTAGTG+AGG - chr3.1:3759255-3759274 None:intergenic 35.0%
! CATTTTTCCAACAAGTGACA+GGG + chr3.1:3759356-3759375 MS.gene78842:CDS 35.0%
! CCATTGTTCTTTTGTTCACT+TGG - chr3.1:3757862-3757881 None:intergenic 35.0%
! CTTTTCAGAACAATTGGGTT+AGG + chr3.1:3759409-3759428 MS.gene78842:CDS 35.0%
! TCGATCAGGGTAAATGTTTT+TGG - chr3.1:3758672-3758691 None:intergenic 35.0%
! TTTCTTCTTCTTTGGAGGTT+GGG + chr3.1:3759840-3759859 MS.gene78842:CDS 35.0%
! TTTGATGATCTTGACTGGTT+TGG - chr3.1:3759171-3759190 None:intergenic 35.0%
!! GATCATGGTGGATTAAGTAA+AGG + chr3.1:3759607-3759626 MS.gene78842:CDS 35.0%
!! TCTGGGATTTTCTTCTTCTT+TGG + chr3.1:3759832-3759851 MS.gene78842:CDS 35.0%
!! TTTTCTTCTTCTTTGGAGGT+TGG + chr3.1:3759839-3759858 MS.gene78842:CDS 35.0%
AAGTGACGACAGAGTTAAAG+AGG + chr3.1:3759981-3760000 MS.gene78842:CDS 40.0%
ACATTGACGTAGATTTCACG+GGG - chr3.1:3758585-3758604 None:intergenic 40.0%
ACGTCAATGTCACATTTCCA+AGG + chr3.1:3758595-3758614 MS.gene78842:intron 40.0%
ACTTTCTCCATCTGTTCAAG+TGG - chr3.1:3759919-3759938 None:intergenic 40.0%
AGAAAAGATTGAAGGCGGTT+GGG + chr3.1:3759054-3759073 MS.gene78842:CDS 40.0%
AGAAAATCCCAGACTTGAAG+TGG - chr3.1:3759825-3759844 None:intergenic 40.0%
AGGAGAACCTTGTTCATAGT+CGG + chr3.1:3759523-3759542 MS.gene78842:CDS 40.0%
ATATGACCGCTATGTCTCTA+CGG - chr3.1:3758743-3758762 None:intergenic 40.0%
ATGGCATTGCCAAGATTTAG+AGG + chr3.1:3758959-3758978 MS.gene78842:CDS 40.0%
ATTAGGCTATTGGGAGTTTC+TGG - chr3.1:3759148-3759167 None:intergenic 40.0%
CCAGCTGATCTAATCTCTAA+TGG - chr3.1:3759730-3759749 None:intergenic 40.0%
CCATTAGAGATTAGATCAGC+TGG + chr3.1:3759727-3759746 MS.gene78842:CDS 40.0%
CGCCAATACCAATGCTTAAT+TGG - chr3.1:3759003-3759022 None:intergenic 40.0%
CTTCTATCATCTGTCATGAC+AGG + chr3.1:3759445-3759464 MS.gene78842:CDS 40.0%
GACATTGACGTAGATTTCAC+GGG - chr3.1:3758586-3758605 None:intergenic 40.0%
GCAGTTCATCTGAAAGATCA+TGG + chr3.1:3759592-3759611 MS.gene78842:CDS 40.0%
GCTATTGCCATTACAAGTTG+TGG - chr3.1:3759331-3759350 None:intergenic 40.0%
GGAACAGAAAAGATTGAAGG+CGG + chr3.1:3759049-3759068 MS.gene78842:CDS 40.0%
GGTGACATAAGAAGCAAAGA+AGG - chr3.1:3758124-3758143 None:intergenic 40.0%
GTGAACAAAAGAACAATGGC+AGG + chr3.1:3757863-3757882 MS.gene78842:CDS 40.0%
GTGTCACAATGTATAGTTGG+AGG + chr3.1:3759562-3759581 MS.gene78842:CDS 40.0%
GTTCATCTGAAAGATCATGG+TGG + chr3.1:3759595-3759614 MS.gene78842:CDS 40.0%
TACTTCTCCTGAAGCTTACA+AGG + chr3.1:3758439-3758458 MS.gene78842:intron 40.0%
TCTTATGTCACCAGAGTCTT+TGG + chr3.1:3758132-3758151 MS.gene78842:CDS 40.0%
TCTTGTATGATGGCTGCTAT+GGG + chr3.1:3757907-3757926 MS.gene78842:CDS 40.0%
TGGCATTGCCAAGATTTAGA+GGG + chr3.1:3758960-3758979 MS.gene78842:CDS 40.0%
TGTACATGCTTATAGTCGGT+CGG + chr3.1:3758229-3758248 MS.gene78842:CDS 40.0%
TGTCACGCTCTAATTACAGT+TGG + chr3.1:3758875-3758894 MS.gene78842:intron 40.0%
TTGAACAGATGGAGAAAGTG+TGG + chr3.1:3759920-3759939 MS.gene78842:CDS 40.0%
TTTATGTTGCTGGGTTTGGA+TGG + chr3.1:3759662-3759681 MS.gene78842:CDS 40.0%
! CCTGTCACTTGTTGGAAAAA+TGG - chr3.1:3759358-3759377 None:intergenic 40.0%
! GCCATTTCTGAGAGATATAG+AGG - chr3.1:3758944-3758963 None:intergenic 40.0%
! GGGATTTTCTTCTTCTTTGG+AGG + chr3.1:3759835-3759854 MS.gene78842:CDS 40.0%
! TTTTACCCGTAGAGACATAG+CGG + chr3.1:3758734-3758753 MS.gene78842:intron 40.0%
!! AAATGTGCCACTTGAACAGA+TGG + chr3.1:3759909-3759928 MS.gene78842:CDS 40.0%
!! ACTGGTTTGGATTAGGCTAT+TGG - chr3.1:3759158-3759177 None:intergenic 40.0%
!! ATGTATAGTTGGAGGCATCA+TGG + chr3.1:3759570-3759589 MS.gene78842:CDS 40.0%
!! CCATTTTTCCAACAAGTGAC+AGG + chr3.1:3759355-3759374 MS.gene78842:CDS 40.0%
!! CTGGTTTGGATTAGGCTATT+GGG - chr3.1:3759157-3759176 None:intergenic 40.0%
!! GATCTTGACTGGTTTGGATT+AGG - chr3.1:3759165-3759184 None:intergenic 40.0%
!!! AGTGGCACATTTTTTGTCTC+TGG - chr3.1:3759901-3759920 None:intergenic 40.0%
!!! GCACATTTTTTGTCTCTGGT+AGG - chr3.1:3759897-3759916 None:intergenic 40.0%
AACAGGTGGAGTGACATCAA+TGG + chr3.1:3757960-3757979 MS.gene78842:CDS 45.0%
AATGCCTCCGACTATGAACA+AGG - chr3.1:3759533-3759552 None:intergenic 45.0%
AGAACCTTGTTCATAGTCGG+AGG + chr3.1:3759526-3759545 MS.gene78842:CDS 45.0%
AGACTTGAAGTGGCAAAGCA+TGG - chr3.1:3759815-3759834 None:intergenic 45.0%
ATGACAGGCATAGTAGGTAC+TGG + chr3.1:3759460-3759479 MS.gene78842:CDS 45.0%
CAGAAAAGATTGAAGGCGGT+TGG + chr3.1:3759053-3759072 MS.gene78842:CDS 45.0%
CGAATACTTCAACGAATCCG+AGG + chr3.1:3759199-3759218 MS.gene78842:CDS 45.0%
CTCTTGTATGATGGCTGCTA+TGG + chr3.1:3757906-3757925 MS.gene78842:CDS 45.0%
CTTGGTACTAACCAACCTAG+TGG - chr3.1:3759697-3759716 None:intergenic 45.0%
GAAAAGATTGAAGGCGGTTG+GGG + chr3.1:3759055-3759074 MS.gene78842:CDS 45.0%
GAGGAACTGCCTGCAAAATT+AGG - chr3.1:3758925-3758944 None:intergenic 45.0%
GGCATTGCCAAGATTTAGAG+GGG + chr3.1:3758961-3758980 MS.gene78842:CDS 45.0%
GTAGAGACATAGCGGTCATA+TGG + chr3.1:3758742-3758761 MS.gene78842:intron 45.0%
GTTAAAAGCTGCACCTCCAA+GGG - chr3.1:3758208-3758227 None:intergenic 45.0%
TATGACCGCTATGTCTCTAC+GGG - chr3.1:3758742-3758761 None:intergenic 45.0%
TCTCCTGAAGCTTACAAGGA+GGG + chr3.1:3758443-3758462 MS.gene78842:intron 45.0%
TCTGTCATGACAGGCATAGT+AGG + chr3.1:3759454-3759473 MS.gene78842:CDS 45.0%
TTCTCCTGAAGCTTACAAGG+AGG + chr3.1:3758442-3758461 MS.gene78842:intron 45.0%
TTTGGGAAGAAAAGGGTGAC+AGG - chr3.1:3758308-3758327 None:intergenic 45.0%
! AGAAAGTGTGGCAGGAACAT+TGG + chr3.1:3759932-3759951 MS.gene78842:CDS 45.0%
! ATGCTTTGCCACTTCAAGTC+TGG + chr3.1:3759814-3759833 MS.gene78842:CDS 45.0%
! CATTGATCCCTGTCACTTGT+TGG - chr3.1:3759366-3759385 None:intergenic 45.0%
! TGCTTTGCCACTTCAAGTCT+GGG + chr3.1:3759815-3759834 MS.gene78842:CDS 45.0%
! TTACAAGGAGGGTGTGAACA+GGG + chr3.1:3758454-3758473 MS.gene78842:intron 45.0%
!! CGCCTTTTGATGATCTTGAC+TGG - chr3.1:3759176-3759195 None:intergenic 45.0%
!! GCTATGGGAGGTGTCATATT+TGG + chr3.1:3757922-3757941 MS.gene78842:CDS 45.0%
!! GGGAGTTTCTGGTAGGAAAA+GGG - chr3.1:3759137-3759156 None:intergenic 45.0%
!! TGGGAGTTTCTGGTAGGAAA+AGG - chr3.1:3759138-3759157 None:intergenic 45.0%
!!! TGTGGCAGGAACATTGGTTT+TGG + chr3.1:3759938-3759957 MS.gene78842:CDS 45.0%
ACACCCTCCTTGTAAGCTTC+AGG - chr3.1:3758449-3758468 None:intergenic 50.0%
CCAGCCTCTTTCCTAACACT+AGG + chr3.1:3759109-3759128 MS.gene78842:CDS 50.0%
CCTAGTGTTAGGAAAGAGGC+TGG - chr3.1:3759112-3759131 None:intergenic 50.0%
CGTTAAAAGCTGCACCTCCA+AGG - chr3.1:3758209-3758228 None:intergenic 50.0%
CTTGCACATCTTCTACGCCT+CGG - chr3.1:3759219-3759238 None:intergenic 50.0%
GGAAAGAAAGCTTGGCTACC+TGG - chr3.1:3758287-3758306 None:intergenic 50.0%
GGCACCTAGTGTTAGGAAAG+AGG - chr3.1:3759116-3759135 None:intergenic 50.0%
GGGTGACAGGAAAGAAAGCT+TGG - chr3.1:3758295-3758314 None:intergenic 50.0%
TGTATGATGGCTGCTATGGG+AGG + chr3.1:3757910-3757929 MS.gene78842:CDS 50.0%
! ACAGATGGAGAAAGTGTGGC+AGG + chr3.1:3759924-3759943 MS.gene78842:CDS 50.0%
! CTTACAAGGAGGGTGTGAAC+AGG + chr3.1:3758453-3758472 MS.gene78842:intron 50.0%
! CTTCTTCTTTGGAGGTTGGG+TGG + chr3.1:3759843-3759862 MS.gene78842:CDS 50.0%
! CTTTTGCTTGGAGTTGGGGT+TGG + chr3.1:3758252-3758271 MS.gene78842:CDS 50.0%
! TCGGCTTTTGCTTGGAGTTG+GGG + chr3.1:3758248-3758267 MS.gene78842:CDS 50.0%
!! ATAGTCGGTCGGCTTTTGCT+TGG + chr3.1:3758240-3758259 MS.gene78842:CDS 50.0%
!! GGAAAAGGGCACCTAGTGTT+AGG - chr3.1:3759123-3759142 None:intergenic 50.0%
!! GGCTATTGGGAGTTTCTGGT+AGG - chr3.1:3759144-3759163 None:intergenic 50.0%
!! GTCGGCTTTTGCTTGGAGTT+GGG + chr3.1:3758247-3758266 MS.gene78842:CDS 50.0%
!!! TGGGGTTGGTTTTGCTAACC+AGG + chr3.1:3758266-3758285 MS.gene78842:CDS 50.0%
AAGCCGTCTATCGTTGCAGG+TGG + chr3.1:3758159-3758178 MS.gene78842:CDS 55.0%
AGATTGAAGGCGGTTGGGGT+TGG + chr3.1:3759059-3759078 MS.gene78842:CDS 55.0%
GCACCACCTGCAACGATAGA+CGG - chr3.1:3758165-3758184 None:intergenic 55.0%
TGCTGGGTTTGGATGGTCGT+GGG + chr3.1:3759669-3759688 MS.gene78842:CDS 55.0%
TGGAACTGCTGCCATGGCTA+GGG - chr3.1:3759092-3759111 None:intergenic 55.0%
TTGCTGGGTTTGGATGGTCG+TGG + chr3.1:3759668-3759687 MS.gene78842:CDS 55.0%
TTGGCGTGTATCCCTAGCCA+TGG + chr3.1:3759078-3759097 MS.gene78842:CDS 55.0%
! CTTCTTTGGAGGTTGGGTGG+TGG + chr3.1:3759846-3759865 MS.gene78842:CDS 55.0%
!! GGTCGGCTTTTGCTTGGAGT+TGG + chr3.1:3758246-3758265 MS.gene78842:CDS 55.0%
AGAGGCTGGAACTGCTGCCA+TGG - chr3.1:3759098-3759117 None:intergenic 60.0%
CGCAAGCCGTCTATCGTTGC+AGG + chr3.1:3758156-3758175 MS.gene78842:CDS 60.0%
CGGCTTGCGACCAAAGACTC+TGG - chr3.1:3758145-3758164 None:intergenic 60.0%
CTGGAACTGCTGCCATGGCT+AGG - chr3.1:3759093-3759112 None:intergenic 60.0%
GCTGGGTTTGGATGGTCGTG+GGG + chr3.1:3759670-3759689 MS.gene78842:CDS 60.0%
TGCACCTCCAAGGGCTGTAC+CGG - chr3.1:3758199-3758218 None:intergenic 60.0%
GGATGGTCGTGGGGTCCACT+AGG + chr3.1:3759679-3759698 MS.gene78842:CDS 65.0%
GGTCGTGGGGTCCACTAGGT+TGG + chr3.1:3759683-3759702 MS.gene78842:CDS 65.0%
TTCCTCGCCGGTACAGCCCT+TGG + chr3.1:3758189-3758208 MS.gene78842:CDS 65.0%
CTCGCCGGTACAGCCCTTGG+AGG + chr3.1:3758192-3758211 MS.gene78842:CDS 70.0%
! CTCCAAGGGCTGTACCGGCG+AGG - chr3.1:3758194-3758213 None:intergenic 70.0%
!! GGTGGTGCTGCGTTCCTCGC+CGG + chr3.1:3758177-3758196 MS.gene78842:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 3757832 3760011 3757832 ID=MS.gene78842
chr3.1 mRNA 3757832 3760011 3757832 ID=MS.gene78842.t1;Parent=MS.gene78842
chr3.1 exon 3757832 3758287 3757832 ID=MS.gene78842.t1.exon1;Parent=MS.gene78842.t1
chr3.1 CDS 3757832 3758287 3757832 ID=cds.MS.gene78842.t1;Parent=MS.gene78842.t1
chr3.1 exon 3758935 3760011 3758935 ID=MS.gene78842.t1.exon2;Parent=MS.gene78842.t1
chr3.1 CDS 3758935 3760011 3758935 ID=cds.MS.gene78842.t1;Parent=MS.gene78842.t1
Gene Sequence

>MS.gene78842

ATGGCAGTTGGATTGGCTATAACATGTCCAAGTGAACAAAAGAACAATGGCAGGATAACCCTTTATGTTGTTCTCTCTTGTATGATGGCTGCTATGGGAGGTGTCATATTTGGTTATGACATTGGTATAACAGGTGGAGTGACATCAATGGAACCATTTCTGAATAAATTCTTCCACAACATATACCTTAAGATGAAATCAGATGATAAAGTTAGCAACTACTGCATGTTTGACAGTCAACTATTGACTTCTTTTACATCTTCTCTTTATGTTGCTGGTTTTGTTACTTCCTTCTTTGCTTCTTATGTCACCAGAGTCTTTGGTCGCAAGCCGTCTATCGTTGCAGGTGGTGCTGCGTTCCTCGCCGGTACAGCCCTTGGAGGTGCAGCTTTTAACGTGTACATGCTTATAGTCGGTCGGCTTTTGCTTGGAGTTGGGGTTGGTTTTGCTAACCAGGTAGCCAAGCTTTCTTTCCTGTCACCCTTTTCTTCCCAAACACTTAGAGAAATACTAAAACAGTTTCATAATAATCAACAGATTTTGAAACAAAATTTTTTCAAATAAGTTGAAATTAACTTCTACATCTCAATTTTCAGTAACTCTCATTTACTTCTCCTGAAGCTTACAAGGAGGGTGTGAACAGGGAATTTTGTCCCTGAAACTATCAATCAAATTAGTCCTTGATTTTTACTAATTATCAATTTTGTCCTTGAAATTTTAACACGTAAATAAAAATGAAGATGTATCAATCCCCGTGAAATCTACGTCAATGTCACATTTCCAAGGAGAAAATTGCTTGTTATATAAATTGTTGGGTATAAGGCAAGGAGTTACTTTCCAAAAACATTTACCCTGATCGAATCCAATAGAAAATCATGTCAAGTAACGTGGAGACGTGACACTTTTACCCGTAGAGACATAGCGGTCATATGGAGTTCGCGTCAAGTGTCACATCTTCACTTAAAGTATAAGTTAATCCAATCTGAACCAAACAAATATCTAAGTTTATCTAAATCTCTAACATAGACTTGTCTGACATCAATTGTCACGCTCTAATTACAGTTGGACTTCAACTTCTTTCACATTATGTCCTAATTTTGCAGGCAGTTCCTCTATATCTCTCAGAAATGGCATTGCCAAGATTTAGAGGGGCAATAAACAATGGCTTCCAATTAAGCATTGGTATTGGCGCTTTGTCTGCTAATCTAATCAACTATGGAACAGAAAAGATTGAAGGCGGTTGGGGTTGGCGTGTATCCCTAGCCATGGCAGCAGTTCCAGCCTCTTTCCTAACACTAGGTGCCCTTTTCCTACCAGAAACTCCCAATAGCCTAATCCAAACCAGTCAAGATCATCAAAAGGCGAAGCGAATACTTCAACGAATCCGAGGCGTAGAAGATGTGCAAGAAGAACTTGATGACCTCACTAAAGCAAGTTCTACTTCAAAAATTAGTTCAGAACAACCATTTAAGATTATATTGAAAAGAAGATATAGACCACAACTTGTAATGGCAATAGCGATACCATTTTTCCAACAAGTGACAGGGATCAATGTCATTGCTTTCTATGCCCCTTTACTTTTCAGAACAATTGGGTTAGGAGAAAGTGCATCGCTTCTATCATCTGTCATGACAGGCATAGTAGGTACTGGTTCAACGTTCATATCAATGCTCATAGTAGATAAACTTGGAAGGAGAACCTTGTTCATAGTCGGAGGCATTCAAATGTTTGTGTCACAATGTATAGTTGGAGGCATCATGGCAGTTCATCTGAAAGATCATGGTGGATTAAGTAAAGGGTATGCTTATATGGTTTTGATAATGATATGTATTTATGTTGCTGGGTTTGGATGGTCGTGGGGTCCACTAGGTTGGTTAGTACCAAGTGAGATTTTTCCATTAGAGATTAGATCAGCTGGACAAAGCATCACAGTAGCAGTGAGTTTTCTCTTCACTTTTATTGTTGCTCAGACTTTTCTATCCATGCTTTGCCACTTCAAGTCTGGGATTTTCTTCTTCTTTGGAGGTTGGGTGGTGGTGATGACTGTGTTTGTGTATTGTTTCCTACCAGAGACAAAAAATGTGCCACTTGAACAGATGGAGAAAGTGTGGCAGGAACATTGGTTTTGGAAGAAAATAGTGGGAAAAACAAGTGACGACAGAGTTAAAGAGGAATTATAA
Protein sequence

>MS.gene78842.t1

MAVGLAITCPSEQKNNGRITLYVVLSCMMAAMGGVIFGYDIGITGGVTSMEPFLNKFFHNIYLKMKSDDKVSNYCMFDSQLLTSFTSSLYVAGFVTSFFASYVTRVFGRKPSIVAGGAAFLAGTALGGAAFNVYMLIVGRLLLGVGVGFANQAVPLYLSEMALPRFRGAINNGFQLSIGIGALSANLINYGTEKIEGGWGWRVSLAMAAVPASFLTLGALFLPETPNSLIQTSQDHQKAKRILQRIRGVEDVQEELDDLTKASSTSKISSEQPFKIILKRRYRPQLVMAIAIPFFQQVTGINVIAFYAPLLFRTIGLGESASLLSSVMTGIVGTGSTFISMLIVDKLGRRTLFIVGGIQMFVSQCIVGGIMAVHLKDHGGLSKGYAYMVLIMICIYVAGFGWSWGPLGWLVPSEIFPLEIRSAGQSITVAVSFLFTFIVAQTFLSMLCHFKSGIFFFFGGWVVVMTVFVYCFLPETKNVPLEQMEKVWQEHWFWKKIVGKTSDDRVKEEL