AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45698


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45698.t1 MTR_4g069500 99.042 522 5 0 1 522 1 522 0.0 1049
MS.gene45698.t1 MTR_4g069500 98.941 472 5 0 51 522 1 472 0.0 943
MS.gene45698.t1 MTR_3g116240 81.967 488 86 1 13 498 11 498 0.0 826
MS.gene45698.t1 MTR_4g072030 75.096 522 123 3 1 522 1 515 0.0 790
MS.gene45698.t1 MTR_4g069500 99.399 333 2 0 190 522 1 333 0.0 669
MS.gene45698.t1 MTR_8g077890 59.877 486 191 3 27 510 16 499 0.0 583
MS.gene45698.t1 MTR_5g075300 56.584 486 206 3 25 508 14 496 0.0 573
MS.gene45698.t1 MTR_6g088450 53.196 485 215 2 2 483 27 502 0.0 527
MS.gene45698.t1 MTR_2g013310 52.024 494 216 5 22 515 45 517 1.96e-176 507
MS.gene45698.t1 MTR_8g103500 52.258 465 214 2 27 491 15 471 2.36e-166 481
MS.gene45698.t1 MTR_7g446340 47.732 507 244 6 12 517 41 527 3.28e-163 474
MS.gene45698.t1 MTR_6g007340 47.732 507 244 6 12 517 41 527 3.28e-163 474
MS.gene45698.t1 MTR_2g013310 51.613 465 204 5 51 515 1 444 7.02e-163 470
MS.gene45698.t1 MTR_5g019870 47.590 498 241 5 27 519 12 494 3.50e-158 459
MS.gene45698.t1 MTR_3g084110 30.847 496 313 9 20 508 16 488 3.51e-72 238
MS.gene45698.t1 MTR_1g116660 31.837 490 300 11 17 497 20 484 6.91e-71 235
MS.gene45698.t1 MTR_7g005910 30.357 504 319 10 17 510 18 499 2.23e-70 233
MS.gene45698.t1 MTR_1g116650 30.181 497 301 8 17 502 63 524 1.21e-68 230
MS.gene45698.t1 MTR_4g077740 31.818 506 299 15 9 489 14 498 2.31e-68 228
MS.gene45698.t1 MTR_3g074410 29.400 500 304 11 34 507 29 505 2.35e-60 207
MS.gene45698.t1 MTR_7g082270 31.546 485 295 12 11 488 45 499 2.55e-60 207
MS.gene45698.t1 MTR_5g006070 29.134 508 309 11 32 513 25 507 1.88e-58 202
MS.gene45698.t1 MTR_0009s0370 28.952 525 321 13 20 515 10 511 4.61e-58 201
MS.gene45698.t1 MTR_6g018790 31.533 463 273 11 36 488 111 539 1.14e-57 201
MS.gene45698.t1 MTR_5g006070 29.825 456 291 8 63 513 28 459 2.60e-57 198
MS.gene45698.t1 MTR_3g023480 29.868 529 321 11 11 508 2 511 2.76e-57 199
MS.gene45698.t1 MTR_5g020270 28.542 487 312 10 12 491 31 488 4.20e-56 195
MS.gene45698.t1 MTR_5g077580 28.036 560 272 12 26 488 22 547 1.77e-54 193
MS.gene45698.t1 MTR_5g041550 27.843 510 319 10 28 510 22 509 2.31e-54 191
MS.gene45698.t1 MTR_7g094450 28.660 485 306 9 12 490 22 472 2.34e-54 190
MS.gene45698.t1 MTR_1g038600 29.191 507 321 9 1 499 1 477 7.77e-54 189
MS.gene45698.t1 MTR_3g074390 28.340 494 313 8 34 505 32 506 1.21e-53 189
MS.gene45698.t1 MTR_1g104750 28.630 489 302 12 32 497 26 490 1.48e-53 189
MS.gene45698.t1 MTR_3g008160 26.415 530 341 11 6 513 3 505 2.17e-53 188
MS.gene45698.t1 MTR_0204s0020 28.454 485 306 9 31 495 23 486 3.42e-53 187
MS.gene45698.t1 MTR_4g090600 28.630 489 298 11 34 496 27 490 6.61e-53 187
MS.gene45698.t1 MTR_1g104780 28.090 534 324 11 19 521 11 515 6.94e-53 187
MS.gene45698.t1 MTR_8g077310 27.273 462 307 8 33 491 50 485 7.03e-53 186
MS.gene45698.t1 MTR_4g118610 28.689 488 311 9 10 491 30 486 7.17e-53 187
MS.gene45698.t1 MTR_1g104770 27.088 491 311 9 34 497 27 497 9.80e-53 186
MS.gene45698.t1 MTR_7g082270 32.701 422 247 12 11 425 45 436 1.10e-52 186
MS.gene45698.t1 MTR_0204s0020 28.423 482 307 9 31 495 23 483 1.77e-52 186
MS.gene45698.t1 MTR_5g020270 30.476 420 251 10 81 491 1 388 3.58e-52 182
MS.gene45698.t1 MTR_1g022315 28.817 465 299 7 32 491 51 488 6.59e-52 184
MS.gene45698.t1 MTR_3g008170 27.096 513 333 10 21 510 13 507 8.50e-52 184
MS.gene45698.t1 MTR_2g049020 32.500 360 223 6 26 382 22 364 9.50e-52 186
MS.gene45698.t1 MTR_1g038630 27.599 529 327 10 1 503 1 499 1.08e-51 184
MS.gene45698.t1 MTR_7g113970 29.103 457 296 7 35 491 67 495 1.35e-51 183
MS.gene45698.t1 MTR_3g008160 28.082 438 290 7 78 513 42 456 2.54e-51 182
MS.gene45698.t1 MTR_4g091370 27.607 489 303 9 34 496 27 490 2.77e-51 183
MS.gene45698.t1 MTR_8g077300 27.291 502 310 10 16 491 5 477 3.45e-51 182
MS.gene45698.t1 MTR_5g082540 29.038 520 316 12 21 512 14 508 6.05e-51 182
MS.gene45698.t1 MTR_2g020710 29.694 458 279 9 41 490 60 482 9.39e-51 181
MS.gene45698.t1 MTR_3g093010 27.345 501 316 10 31 506 23 500 1.18e-50 181
MS.gene45698.t1 MTR_0204s0040 28.024 496 315 10 21 495 20 494 1.26e-50 181
MS.gene45698.t1 MTR_3g093060 29.298 413 269 6 80 488 46 439 1.82e-50 179
MS.gene45698.t1 MTR_2g026160 31.856 361 233 4 22 379 19 369 7.79e-50 180
MS.gene45698.t1 MTR_2g026160 37.374 99 62 0 398 496 463 561 1.85e-14 76.6
MS.gene45698.t1 MTR_4g116770 28.024 496 315 10 21 495 216 690 1.08e-49 182
MS.gene45698.t1 MTR_8g102860 26.901 513 324 13 29 512 26 516 1.49e-49 178
MS.gene45698.t1 MTR_7g094110 28.601 479 314 7 12 490 24 474 2.60e-49 177
MS.gene45698.t1 MTR_2g020710 30.189 424 253 9 75 490 5 393 4.10e-49 174
MS.gene45698.t1 MTR_8g102860 29.040 427 273 10 95 512 59 464 8.93e-49 175
MS.gene45698.t1 MTR_4g116790 27.639 521 331 11 21 520 18 513 9.32e-49 176
MS.gene45698.t1 MTR_5g094760 27.218 496 315 10 23 495 20 492 1.47e-48 175
MS.gene45698.t1 MTR_3g007910 27.088 491 304 11 31 507 23 473 1.68e-48 174
MS.gene45698.t1 MTR_6g087040 24.748 497 333 9 31 506 28 504 3.10e-48 174
MS.gene45698.t1 MTR_6g088375 24.748 497 333 9 31 506 28 504 3.10e-48 174
MS.gene45698.t1 MTR_7g091690 28.112 498 308 12 23 497 20 490 6.34e-48 174
MS.gene45698.t1 MTR_8g077310 27.578 417 267 9 81 491 1 388 1.34e-47 170
MS.gene45698.t1 MTR_1g022315 29.567 416 261 7 81 491 1 389 1.86e-47 169
MS.gene45698.t1 MTR_5g020270 27.010 485 301 10 12 491 31 467 4.76e-47 170
MS.gene45698.t1 MTR_7g113960 28.238 471 300 9 41 507 38 474 2.49e-46 169
MS.gene45698.t1 MTR_2g048720 32.869 359 208 8 26 374 22 357 2.61e-46 170
MS.gene45698.t1 MTR_3g074270 27.160 486 288 12 34 495 27 470 1.70e-44 164
MS.gene45698.t1 MTR_3g080240 28.151 476 289 13 30 490 93 530 1.08e-43 162
MS.gene45698.t1 MTR_2g026140 30.978 368 219 7 36 398 30 367 6.26e-41 155
MS.gene45698.t1 MTR_2g026140 36.364 99 63 0 398 496 448 546 6.58e-11 65.1
MS.gene45698.t1 MTR_4g064820 30.874 366 221 13 26 371 88 441 1.22e-40 153
MS.gene45698.t1 MTR_3g074370 30.973 339 207 7 176 508 21 338 4.31e-40 148
MS.gene45698.t1 MTR_3g074320 29.970 337 213 6 176 508 21 338 3.59e-39 145
MS.gene45698.t1 MTR_3g074340 30.383 339 209 7 176 508 21 338 4.18e-39 145
MS.gene45698.t1 MTR_2g020710 29.351 385 230 8 41 417 60 410 4.83e-39 147
MS.gene45698.t1 MTR_6g087910 27.143 490 320 10 7 488 23 483 5.95e-39 149
MS.gene45698.t1 MTR_4g118610 28.019 414 262 8 10 417 30 413 6.49e-39 147
MS.gene45698.t1 MTR_2g020710 29.427 384 229 8 41 416 60 409 8.35e-39 147
MS.gene45698.t1 MTR_7g094110 26.722 479 303 7 12 490 24 454 9.04e-39 147
MS.gene45698.t1 MTR_3g074380 27.606 355 220 6 34 369 30 366 4.24e-38 144
MS.gene45698.t1 MTR_8g077310 27.193 342 224 5 33 374 50 366 3.96e-37 142
MS.gene45698.t1 MTR_4g013205 26.749 486 323 9 6 488 14 469 3.34e-36 140
MS.gene45698.t1 MTR_3g116060 34.043 235 144 5 28 257 2 230 1.28e-32 132
MS.gene45698.t1 MTR_3g116060 29.167 240 154 6 272 502 496 728 1.07e-21 99.4
MS.gene45698.t1 MTR_7g113970 27.035 344 225 5 35 378 67 384 1.41e-32 129
MS.gene45698.t1 MTR_2g020710 27.778 342 206 7 41 374 60 368 1.06e-29 120
MS.gene45698.t1 MTR_4g116790 25.210 357 229 6 21 358 18 355 3.80e-29 119
MS.gene45698.t1 MTR_3g118530 36.098 205 121 5 41 239 15 215 1.08e-28 120
MS.gene45698.t1 MTR_3g118530 29.730 222 140 6 273 485 507 721 6.44e-23 103
MS.gene45698.t1 MTR_3g118530 36.098 205 121 5 41 239 15 215 1.44e-28 120
MS.gene45698.t1 MTR_7g113960 27.485 342 214 7 41 378 38 349 3.85e-28 116
MS.gene45698.t1 MTR_5g024740 33.005 203 128 4 34 231 8 207 1.27e-25 111
MS.gene45698.t1 MTR_5g024740 29.249 253 160 6 245 485 458 703 1.17e-17 86.7
MS.gene45698.t1 MTR_8g073100 31.527 203 131 5 34 231 8 207 2.87e-24 107
MS.gene45698.t1 MTR_8g073100 27.928 222 144 4 273 485 485 699 1.64e-18 89.4
MS.gene45698.t1 MTR_5g044910 31.527 203 131 4 34 231 8 207 6.57e-24 106
MS.gene45698.t1 MTR_5g044910 27.068 266 171 6 231 485 448 701 4.89e-18 88.2
MS.gene45698.t1 MTR_3g074400 25.000 424 244 12 81 481 44 416 5.65e-23 101
MS.gene45698.t1 MTR_2g081930 24.762 420 267 17 80 486 134 517 1.19e-12 70.5
MS.gene45698.t1 MTR_1g069935 24.453 548 305 22 11 487 2 511 1.20e-12 70.5
MS.gene45698.t1 MTR_5g096000 30.667 150 103 1 31 179 23 172 1.03e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45698.t1 AT3G18830 72.565 503 135 3 20 519 26 528 0.0 755
MS.gene45698.t1 AT2G16120 67.617 491 156 3 23 511 19 508 0.0 684
MS.gene45698.t1 AT2G16130 67.360 481 155 2 23 501 19 499 0.0 675
MS.gene45698.t1 AT4G36670 57.526 485 205 1 21 504 8 492 0.0 576
MS.gene45698.t1 AT2G18480 58.542 480 195 3 13 491 7 483 0.0 556
MS.gene45698.t1 AT2G20780 49.004 502 236 6 8 506 34 518 2.06e-166 482
MS.gene45698.t1 AT2G20780 49.446 451 209 5 59 506 26 460 3.81e-148 433
MS.gene45698.t1 AT2G43330 31.928 498 312 8 6 497 5 481 4.11e-69 230
MS.gene45698.t1 AT5G59250 31.590 478 278 11 35 489 103 554 4.15e-65 221
MS.gene45698.t1 AT5G17010 31.225 506 294 15 13 489 20 500 1.05e-64 219
MS.gene45698.t1 AT5G17010 31.225 506 294 15 13 489 20 500 1.05e-64 219
MS.gene45698.t1 AT5G17010 31.225 506 294 15 13 489 20 500 1.05e-64 219
MS.gene45698.t1 AT1G50310 28.858 499 309 9 34 509 29 504 1.98e-62 213
MS.gene45698.t1 AT1G11260 28.655 513 318 11 31 519 25 513 7.59e-62 211
MS.gene45698.t1 AT3G19940 29.249 506 297 11 34 509 29 503 1.49e-60 208
MS.gene45698.t1 AT3G05150 30.435 506 303 10 7 500 8 476 4.17e-59 203
MS.gene45698.t1 AT5G16150 32.265 499 289 12 5 488 75 539 5.29e-59 204
MS.gene45698.t1 AT5G16150 32.265 499 289 12 5 488 75 539 5.29e-59 204
MS.gene45698.t1 AT5G16150 32.265 499 289 12 5 488 75 539 5.29e-59 204
MS.gene45698.t1 AT3G03090 31.210 471 286 12 35 489 52 500 7.23e-59 203
MS.gene45698.t1 AT5G27360 29.124 491 309 12 8 491 10 468 1.93e-58 201
MS.gene45698.t1 AT5G27360 29.124 491 309 12 8 491 58 516 3.89e-58 202
MS.gene45698.t1 AT3G05150 30.101 495 299 9 7 489 8 467 1.21e-57 199
MS.gene45698.t1 AT3G05150 30.101 495 299 9 7 489 8 467 1.21e-57 199
MS.gene45698.t1 AT5G23270 29.084 502 285 11 34 499 28 494 4.65e-57 199
MS.gene45698.t1 AT5G27350 28.974 497 310 11 1 490 3 463 2.13e-56 196
MS.gene45698.t1 AT1G54730 30.283 459 282 10 41 494 43 468 5.14e-55 192
MS.gene45698.t1 AT3G05960 28.240 517 324 10 20 509 11 507 1.13e-54 192
MS.gene45698.t1 AT1G75220 28.448 464 303 7 31 491 49 486 1.55e-54 191
MS.gene45698.t1 AT5G18840 28.252 492 313 8 7 490 18 477 4.48e-54 190
MS.gene45698.t1 AT3G19930 27.481 524 332 11 15 515 12 510 4.81e-54 190
MS.gene45698.t1 AT3G19930 27.481 524 332 11 15 515 12 510 4.81e-54 190
MS.gene45698.t1 AT5G26340 27.755 490 306 11 32 497 26 491 3.72e-53 188
MS.gene45698.t1 AT1G34580 29.032 496 304 13 34 502 28 502 3.81e-53 188
MS.gene45698.t1 AT5G26250 27.992 518 328 11 14 510 10 503 6.49e-53 187
MS.gene45698.t1 AT1G19450 28.017 464 305 7 31 491 50 487 1.24e-52 186
MS.gene45698.t1 AT4G21480 29.000 500 308 13 25 499 18 495 2.92e-52 185
MS.gene45698.t1 AT1G34580 30.930 430 268 10 81 502 44 452 3.68e-52 184
MS.gene45698.t1 AT3G05165 26.908 498 314 10 6 490 2 462 1.35e-51 182
MS.gene45698.t1 AT3G05165 26.908 498 314 10 6 490 2 462 1.35e-51 182
MS.gene45698.t1 AT3G05165 26.908 498 314 10 6 490 2 462 1.35e-51 182
MS.gene45698.t1 AT1G50310 31.267 371 229 7 142 509 14 361 1.06e-50 178
MS.gene45698.t1 AT3G05160 25.941 478 314 7 21 490 8 453 2.43e-49 176
MS.gene45698.t1 AT1G07340 28.654 520 327 12 9 507 2 498 2.79e-49 177
MS.gene45698.t1 AT5G27360 30.990 384 231 10 110 490 11 363 5.45e-49 173
MS.gene45698.t1 AT5G27360 30.990 384 231 10 110 490 11 363 5.45e-49 173
MS.gene45698.t1 AT1G30220 31.988 347 216 5 26 367 24 355 7.63e-49 177
MS.gene45698.t1 AT1G30220 31.356 118 75 1 398 509 463 580 1.04e-13 74.3
MS.gene45698.t1 AT2G48020 27.216 485 315 10 8 489 10 459 1.34e-48 174
MS.gene45698.t1 AT2G48020 27.216 485 315 10 8 489 10 459 1.34e-48 174
MS.gene45698.t1 AT4G02050 27.220 518 328 10 21 511 18 513 3.26e-48 174
MS.gene45698.t1 AT4G02050 27.220 518 328 10 21 511 18 513 3.26e-48 174
MS.gene45698.t1 AT1G08930 27.823 496 311 11 8 489 27 489 4.41e-48 174
MS.gene45698.t1 AT1G08930 27.823 496 311 11 8 489 27 489 4.41e-48 174
MS.gene45698.t1 AT1G54730 30.244 410 249 9 41 445 43 420 1.56e-47 171
MS.gene45698.t1 AT1G05030 30.480 479 274 14 30 490 79 516 2.36e-47 172
MS.gene45698.t1 AT1G77210 27.146 501 320 11 29 506 26 504 6.97e-47 171
MS.gene45698.t1 AT1G77210 27.146 501 320 11 29 506 26 504 6.97e-47 171
MS.gene45698.t1 AT3G05400 28.009 457 289 11 41 491 37 459 3.33e-46 168
MS.gene45698.t1 AT3G05160 26.667 435 283 6 60 490 2 404 1.09e-45 165
MS.gene45698.t1 AT3G05160 26.667 435 283 6 60 490 2 404 1.09e-45 165
MS.gene45698.t1 AT2G35740 30.471 361 236 7 29 385 25 374 1.35e-45 169
MS.gene45698.t1 AT2G35740 33.628 113 72 1 398 507 466 578 5.64e-14 75.1
MS.gene45698.t1 AT4G04750 27.273 440 282 13 58 491 64 471 1.68e-45 166
MS.gene45698.t1 AT4G04750 27.273 440 282 13 58 491 64 471 1.68e-45 166
MS.gene45698.t1 AT4G04750 27.273 440 282 13 58 491 108 515 2.75e-45 167
MS.gene45698.t1 AT1G54730 28.665 457 271 11 41 494 43 447 4.28e-45 165
MS.gene45698.t1 AT5G61520 25.686 510 331 10 25 506 19 508 5.54e-45 166
MS.gene45698.t1 AT4G16480 30.585 376 241 7 1 371 1 361 3.88e-44 164
MS.gene45698.t1 AT4G16480 35.345 116 71 1 398 509 467 582 1.02e-15 80.5
MS.gene45698.t1 AT4G16480 30.585 376 241 7 1 371 1 361 3.88e-44 164
MS.gene45698.t1 AT4G16480 35.345 116 71 1 398 509 467 582 1.02e-15 80.5
MS.gene45698.t1 AT4G16480 30.585 376 241 7 1 371 1 361 3.88e-44 164
MS.gene45698.t1 AT4G16480 35.345 116 71 1 398 509 467 582 1.02e-15 80.5
MS.gene45698.t1 AT4G04760 27.312 465 297 12 35 491 36 467 1.62e-43 161
MS.gene45698.t1 AT4G04760 27.727 440 277 12 60 491 2 408 2.71e-43 159
MS.gene45698.t1 AT5G27360 28.471 425 266 11 8 425 10 403 2.97e-43 159
MS.gene45698.t1 AT5G61520 27.040 429 290 7 81 506 52 460 3.32e-43 160
MS.gene45698.t1 AT1G08890 26.096 479 321 8 21 494 13 463 5.74e-43 159
MS.gene45698.t1 AT1G79820 30.573 471 288 12 28 491 52 490 1.11e-42 159
MS.gene45698.t1 AT1G79820 30.573 471 288 12 28 491 52 490 1.11e-42 159
MS.gene45698.t1 AT3G05400 30.380 395 234 12 104 491 79 439 1.18e-42 158
MS.gene45698.t1 AT3G05155 26.049 453 295 8 41 488 38 455 2.06e-42 157
MS.gene45698.t1 AT1G08900 26.638 473 316 9 22 494 12 453 5.32e-42 156
MS.gene45698.t1 AT3G05165 26.651 439 288 8 6 439 2 411 8.51e-42 156
MS.gene45698.t1 AT3G05165 26.651 439 288 8 6 439 2 411 8.51e-42 156
MS.gene45698.t1 AT1G67300 27.475 495 321 10 6 490 23 489 2.21e-41 155
MS.gene45698.t1 AT1G54730 29.581 382 232 9 41 417 43 392 2.24e-41 154
MS.gene45698.t1 AT1G54730 29.581 382 232 9 41 417 43 392 2.24e-41 154
MS.gene45698.t1 AT1G05030 29.412 459 265 13 50 490 47 464 3.62e-41 154
MS.gene45698.t1 AT3G05165 26.651 439 288 8 6 439 2 411 3.69e-41 155
MS.gene45698.t1 AT1G08900 26.569 478 318 9 22 494 12 461 4.16e-41 154
MS.gene45698.t1 AT1G08900 26.569 478 318 9 22 494 12 461 4.16e-41 154
MS.gene45698.t1 AT1G08900 27.231 437 290 8 58 494 11 419 1.13e-40 152
MS.gene45698.t1 AT1G67300 26.721 494 325 10 6 490 23 488 1.12e-39 150
MS.gene45698.t1 AT1G67300 26.721 494 325 10 6 490 23 488 1.12e-39 150
MS.gene45698.t1 AT5G17010 27.059 510 262 16 7 489 11 437 6.51e-39 147
MS.gene45698.t1 AT1G67300 26.984 441 285 10 6 437 23 435 3.15e-38 145
MS.gene45698.t1 AT1G67300 26.984 441 285 10 6 437 23 435 3.15e-38 145
MS.gene45698.t1 AT1G54730 28.431 408 238 10 41 445 43 399 7.99e-38 144
MS.gene45698.t1 AT1G79820 31.084 415 251 10 28 437 52 436 1.52e-37 144
MS.gene45698.t1 AT1G67300 26.852 432 279 10 6 428 23 426 1.69e-37 143
MS.gene45698.t1 AT1G67300 26.852 432 279 10 6 428 23 426 1.69e-37 143
MS.gene45698.t1 AT1G77210 27.419 372 246 7 138 506 5 355 4.59e-37 140
MS.gene45698.t1 AT3G20460 26.432 454 296 9 45 493 68 488 4.88e-37 143
MS.gene45698.t1 AT4G04760 25.806 465 301 13 35 491 36 464 4.42e-36 140
MS.gene45698.t1 AT1G54730 29.375 320 194 7 41 357 43 333 2.68e-34 132
MS.gene45698.t1 AT3G51490 35.776 232 134 7 34 257 8 232 4.50e-34 137
MS.gene45698.t1 AT3G51490 27.165 254 166 7 244 491 472 712 1.55e-18 89.7
MS.gene45698.t1 AT3G51490 35.776 232 134 7 34 257 8 232 4.61e-34 137
MS.gene45698.t1 AT3G51490 28.682 258 165 7 244 491 472 720 7.63e-22 100
MS.gene45698.t1 AT1G20840 36.364 209 123 4 28 231 2 205 2.07e-32 132
MS.gene45698.t1 AT1G20840 30.864 243 150 6 272 503 498 733 1.45e-18 89.7
MS.gene45698.t1 AT1G20840 36.364 209 123 4 28 231 2 205 2.07e-32 132
MS.gene45698.t1 AT1G20840 30.864 243 150 6 272 503 498 733 1.45e-18 89.7
MS.gene45698.t1 AT1G08920 25.926 459 294 13 41 490 43 464 4.17e-32 129
MS.gene45698.t1 AT1G54730 27.632 380 221 10 41 417 43 371 7.42e-32 127
MS.gene45698.t1 AT1G08900 26.340 429 284 8 22 445 12 413 1.75e-31 126
MS.gene45698.t1 AT2G48020 26.870 361 232 7 23 380 21 352 1.86e-31 125
MS.gene45698.t1 AT4G35300 34.404 218 132 6 41 252 15 227 2.70e-30 125
MS.gene45698.t1 AT4G35300 28.400 250 155 5 266 502 489 727 1.52e-22 102
MS.gene45698.t1 AT4G35300 34.404 218 132 6 41 252 15 227 2.70e-30 125
MS.gene45698.t1 AT4G35300 28.400 250 155 5 266 502 489 727 1.52e-22 102
MS.gene45698.t1 AT4G35300 34.404 218 132 6 41 252 15 227 2.70e-30 125
MS.gene45698.t1 AT4G35300 28.400 250 155 5 266 502 489 727 1.52e-22 102
MS.gene45698.t1 AT4G35300 34.404 218 132 6 41 252 15 227 2.97e-30 125
MS.gene45698.t1 AT4G35300 28.400 250 155 5 266 502 499 737 1.70e-22 102
MS.gene45698.t1 AT4G35300 34.404 218 132 6 41 252 15 227 2.97e-30 125
MS.gene45698.t1 AT4G35300 28.400 250 155 5 266 502 499 737 1.70e-22 102
MS.gene45698.t1 AT4G35300 34.404 218 132 6 41 252 15 227 2.97e-30 125
MS.gene45698.t1 AT4G35300 28.400 250 155 5 266 502 499 737 1.70e-22 102
MS.gene45698.t1 AT4G35300 34.404 218 132 6 41 252 15 227 2.97e-30 125
MS.gene45698.t1 AT4G35300 28.400 250 155 5 266 502 499 737 1.70e-22 102
MS.gene45698.t1 AT4G35300 34.404 218 132 6 41 252 15 227 2.97e-30 125
MS.gene45698.t1 AT4G35300 28.400 250 155 5 266 502 499 737 1.70e-22 102
MS.gene45698.t1 AT4G35300 34.404 218 132 6 41 252 15 227 2.97e-30 125
MS.gene45698.t1 AT4G35300 28.400 250 155 5 266 502 499 737 1.70e-22 102
MS.gene45698.t1 AT4G35300 34.404 218 132 6 41 252 15 227 2.97e-30 125
MS.gene45698.t1 AT4G35300 28.400 250 155 5 266 502 499 737 1.70e-22 102
MS.gene45698.t1 AT1G08920 25.536 466 294 14 41 490 43 471 9.34e-30 122
MS.gene45698.t1 AT1G54730 28.383 303 188 7 41 339 43 320 3.32e-29 118
MS.gene45698.t1 AT1G54730 28.383 303 188 7 41 339 43 320 3.32e-29 118
MS.gene45698.t1 AT2G48020 26.176 340 219 7 23 359 21 331 7.05e-28 115
MS.gene45698.t1 AT3G51490 36.757 185 106 5 80 257 2 182 1.07e-27 117
MS.gene45698.t1 AT3G51490 28.682 258 165 7 244 491 422 670 8.27e-22 99.8
MS.gene45698.t1 AT3G05155 25.705 319 204 8 41 357 38 325 3.05e-26 109
MS.gene45698.t1 AT1G08920 25.765 392 246 12 41 423 43 398 1.46e-23 103
MS.gene45698.t1 AT4G35300 28.400 250 155 5 266 502 302 540 1.15e-22 102
MS.gene45698.t1 AT1G79820 30.918 207 137 3 28 231 52 255 6.95e-17 83.6
MS.gene45698.t1 AT1G79820 33.553 152 93 3 342 491 297 442 1.50e-11 67.0
MS.gene45698.t1 AT1G79820 33.553 152 93 3 342 491 235 380 1.24e-11 67.0
MS.gene45698.t1 AT3G13050 26.136 440 265 15 81 486 74 487 4.87e-11 65.5
MS.gene45698.t1 AT3G13050 26.136 440 265 15 81 486 74 487 4.87e-11 65.5
MS.gene45698.t1 AT3G13050 26.136 440 265 15 81 486 74 487 4.87e-11 65.5
MS.gene45698.t1 AT3G13050 26.136 440 265 15 81 486 74 487 4.87e-11 65.5
MS.gene45698.t1 AT5G43340 22.458 472 280 16 66 488 68 502 5.11e-11 65.5

Find 113 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAAACACAAAGCTAAAT+TGG 0.143556 4.4:-38137451 MS.gene45698:CDS
TCAAAACTATCACTTAAATT+AGG 0.212301 4.4:-38138134 MS.gene45698:CDS
TTTACCATATCCAAGTAAAA+TGG 0.248936 4.4:+38139193 None:intergenic
CTCATTGGTTCATGTCTTGC+CGG 0.296833 4.4:-38138845 MS.gene45698:CDS
GAAGAAATGGAAGCCTCTTT+TGG 0.298781 4.4:-38137134 MS.gene45698:CDS
CTTGTGGTGTTGTGGTGAAT+AGG 0.316596 4.4:-38137304 MS.gene45698:CDS
TAAGGCTCCGGCAAAGAAAA+TGG 0.330343 4.4:+38138772 None:intergenic
TTTGGAGGTATTGCTACAAT+TGG 0.332942 4.4:-38137206 MS.gene45698:CDS
CGTTACACCATCGTGTTTGC+CGG 0.353883 4.4:-38138797 MS.gene45698:CDS
GGGAAAATTGAGGTCTTGTT+AGG 0.356338 4.4:-38138887 MS.gene45698:CDS
CAAGTTGCACAAGTTCAGTT+AGG 0.362764 4.4:-38137059 MS.gene45698:CDS
TTGTAGCAATACCTCCAAAT+AGG 0.368433 4.4:+38137210 None:intergenic
AACTACAACTTCCTCATGTT+TGG 0.374495 4.4:-38138731 MS.gene45698:CDS
GAGAAAGCCACGAGAGGAAG+CGG 0.386076 4.4:+38138637 None:intergenic
ACATCGTCGTTGCAATCTTC+AGG 0.387621 4.4:+38137830 None:intergenic
TATGTAGCAACTTTCTCAAT+TGG 0.390137 4.4:-38137395 MS.gene45698:CDS
AGGTAAAACACTTGAAGAAA+TGG 0.392070 4.4:-38137147 MS.gene45698:CDS
GAGACTTCAGCGGTATAGAC+TGG 0.401754 4.4:+38138662 None:intergenic
AAAACACTGGTGAAGGTGTA+TGG 0.424900 4.4:-38137790 MS.gene45698:CDS
TTCAAACACAAAGCTAAATT+GGG 0.444039 4.4:-38137450 MS.gene45698:CDS
AGAAAGCCACGAGAGGAAGC+GGG 0.446522 4.4:+38138638 None:intergenic
AACTATCACTTAAATTAGGT+TGG 0.451312 4.4:-38138130 MS.gene45698:CDS
AACATGAGGAAGTTGTAGTT+TGG 0.455379 4.4:+38138734 None:intergenic
TTGGAGGTATTGCTACAATT+GGG 0.464188 4.4:-38137205 MS.gene45698:CDS
TTGTGGTGTTGTGGTGAATA+GGG 0.468285 4.4:-38137303 MS.gene45698:CDS
CCTTTGAGGTTGAGGGCACA+AGG 0.470587 4.4:-38137332 MS.gene45698:CDS
AGCATAGCCGATGCCAACTC+CGG 0.471335 4.4:+38138697 None:intergenic
ATCAACATCTACTCTCTCAT+TGG 0.471388 4.4:-38138860 MS.gene45698:CDS
TGCCAACTCCGGCGACAAAA+CGG 0.474251 4.4:+38138708 None:intergenic
TGGTGAATAGGGTCACTAGT+GGG 0.475348 4.4:-38137292 MS.gene45698:CDS
CCTTAGCTGAGCCTCTTCCT+TGG 0.476032 4.4:+38137968 None:intergenic
ACGAGCCATCGTGGTGACTC+TGG 0.481166 4.4:+38138044 None:intergenic
CTTTGCCGGAGCCTTACTCA+TGG 0.483078 4.4:-38138765 MS.gene45698:CDS
ACAAAGCTAAATTGGGCCAT+TGG 0.485743 4.4:-38137443 MS.gene45698:CDS
ACTCACTAGTGTTGGTGGTA+TGG 0.486491 4.4:-38137519 MS.gene45698:CDS
GAGAAAATCAAAGAATACTA+AGG 0.489393 4.4:-38137102 MS.gene45698:CDS
TCCAGCGGCTTGTTTAATCT+CGG 0.492502 4.4:+38137856 None:intergenic
CTGTTACTCACTAGTGTTGG+TGG 0.493290 4.4:-38137524 MS.gene45698:CDS
AGACTTCAGCGGTATAGACT+GGG 0.494870 4.4:+38138663 None:intergenic
TCCAAGTAAAATGGAAGTCA+TGG 0.500166 4.4:+38139202 None:intergenic
TCTAAAGGAATTACGATTGG+TGG 0.500778 4.4:-38137242 MS.gene45698:CDS
TTTGTCGCCGGAGTTGGCAT+CGG 0.500928 4.4:-38138704 MS.gene45698:CDS
CTCGTAATGAGAGGTCGTTT+AGG 0.500941 4.4:-38138026 MS.gene45698:CDS
TGGTGAGAAACCCATGAGTA+AGG 0.502832 4.4:+38138754 None:intergenic
CATATTGTAATAGCTGCACT+AGG 0.508847 4.4:-38137731 MS.gene45698:CDS
TTTGCCGGAGCCTTACTCAT+GGG 0.509489 4.4:-38138764 MS.gene45698:CDS
CTTAACAAATCCAACGGCTA+TGG 0.515197 4.4:+38137601 None:intergenic
CTTATTGCAACCATAGCCGT+TGG 0.515422 4.4:-38137611 MS.gene45698:CDS
GCAACTTTCTCAATTGGTGC+AGG 0.518421 4.4:-38137389 MS.gene45698:CDS
AATCCAGTCGGAGGTTCTGC+CGG 0.519805 4.4:+38138826 None:intergenic
CAACAAAACTTCAGATTCCA+AGG 0.520556 4.4:-38137985 MS.gene45698:CDS
AAGTTGCACAAGTTCAGTTA+GGG 0.522313 4.4:-38137058 MS.gene45698:CDS
AACTTCAGATTCCAAGGAAG+AGG 0.522917 4.4:-38137979 MS.gene45698:CDS
GGCAGAACCTCCGACTGGAT+TGG 0.526767 4.4:-38138824 MS.gene45698:CDS
GAAAGCCACGAGAGGAAGCG+GGG 0.529030 4.4:+38138639 None:intergenic
AAAGCCACGAGAGGAAGCGG+GGG 0.538579 4.4:+38138640 None:intergenic
ACAGTGGACGACGACCATAT+CGG 0.540286 4.4:+38137543 None:intergenic
ATAAACAGTGGAATATTAGT+CGG 0.544490 4.4:-38138179 MS.gene45698:CDS
TTAGGTTGGAGAATGATGCT+TGG 0.547667 4.4:-38138116 MS.gene45698:CDS
GCCGAGATTAAACAAGCCGC+TGG 0.549351 4.4:-38137857 MS.gene45698:CDS
ACTACTATAAACCCATGTGA+TGG 0.549519 4.4:+38137364 None:intergenic
TCCGGCAAAGAAAATGGCGC+CGG 0.556292 4.4:+38138778 None:intergenic
CCTTGTGCCCTCAACCTCAA+AGG 0.562045 4.4:+38137332 None:intergenic
AGTATCCGACGGGAAAATTG+AGG 0.564384 4.4:-38138897 MS.gene45698:CDS
TTGTCTAAAGGAATTACGAT+TGG 0.569189 4.4:-38137245 MS.gene45698:CDS
AGGTGCAGCTTGTGGTGTTG+TGG 0.570667 4.4:-38137312 MS.gene45698:CDS
GAGGTATTGCTACAATTGGG+TGG 0.571968 4.4:-38137202 MS.gene45698:CDS
GTGGTGAATAGGGTCACTAG+TGG 0.574539 4.4:-38137293 MS.gene45698:CDS
TATCTACTGAGTTGAGACAT+TGG 0.574551 4.4:+38137034 None:intergenic
CTACTATAAACCCATGTGAT+GGG 0.576148 4.4:+38137365 None:intergenic
TTGCCGGCAGAACCTCCGAC+TGG 0.576660 4.4:-38138829 MS.gene45698:CDS
TGGCTAAGACTCCAACGGCT+AGG 0.579484 4.4:+38138069 None:intergenic
ATATGACGAACTGCGGGTGT+AGG 0.580443 4.4:+38137749 None:intergenic
GAAACCCATGAGTAAGGCTC+CGG 0.584696 4.4:+38138760 None:intergenic
TTGGTGCAGGACCCATCACA+TGG 0.585356 4.4:-38137376 MS.gene45698:CDS
CCACGATGGCTCGTAATGAG+AGG 0.586462 4.4:-38138035 MS.gene45698:CDS
CGACAAAACGGCCAAACATG+AGG 0.587511 4.4:+38138720 None:intergenic
CTTTCTCACTTCTTTCCCAG+AGG 0.589254 4.4:-38138621 MS.gene45698:intron
ACAGATATTGGTGTTATGAG+TGG 0.592393 4.4:-38138950 MS.gene45698:intron
CCTTCAGTAATCCTAGCCGT+TGG 0.594994 4.4:-38138080 MS.gene45698:CDS
AGGGCACAAGGTGCAGCTTG+TGG 0.595043 4.4:-38137320 MS.gene45698:CDS
CCATCGTGGTGACTCTGGCA+TGG 0.596487 4.4:+38138049 None:intergenic
CCACTGTTACTCACTAGTGT+TGG 0.601446 4.4:-38137527 MS.gene45698:CDS
CCAAGGAAGAGGCTCAGCTA+AGG 0.609894 4.4:-38137968 MS.gene45698:intron
TATTGTGTCAAGATGAGTGA+GGG 0.613570 4.4:-38139326 None:intergenic
GAGACCTTAAAGTATCCGAC+GGG 0.613965 4.4:-38138907 MS.gene45698:CDS
TTGAATGATCGATGATCGTA+AGG 0.614986 4.4:+38137468 None:intergenic
CAAAACTACAGCGTCTACAC+CGG 0.619548 4.4:+38137685 None:intergenic
GGGAAAGATAGTTGAAGCAA+AGG 0.622531 4.4:-38139306 MS.gene45698:CDS
ATTACAATATGACGAACTGC+GGG 0.625794 4.4:+38137743 None:intergenic
AGAGACCTTAAAGTATCCGA+CGG 0.628792 4.4:-38138908 MS.gene45698:CDS
CAAGGTCTTAACAAATCCAA+CGG 0.634572 4.4:+38137595 None:intergenic
AGTTGCTATACTCAATCCAA+TGG 0.639610 4.4:+38137427 None:intergenic
TGGCATGGCTAAGACTCCAA+CGG 0.641928 4.4:+38138064 None:intergenic
AATGGCGCCGGCAAACACGA+TGG 0.644723 4.4:+38138790 None:intergenic
CCAACGGCTAGGATTACTGA+AGG 0.646658 4.4:+38138080 None:intergenic
CCTCTCATTACGAGCCATCG+TGG 0.646747 4.4:+38138035 None:intergenic
TGGAGAATGATGCTTGGAGT+AGG 0.648761 4.4:-38138110 MS.gene45698:CDS
GGTGAATAGGGTCACTAGTG+GGG 0.657688 4.4:-38137291 MS.gene45698:CDS
ATATTGTAATAGCTGCACTA+GGG 0.658336 4.4:-38137730 MS.gene45698:CDS
AGAAGTGAGAAAGCCACGAG+AGG 0.660349 4.4:+38138631 None:intergenic
TATTACAATATGACGAACTG+CGG 0.663026 4.4:+38137742 None:intergenic
AATCGTAATTCCTTTAGACA+AGG 0.664820 4.4:+38137247 None:intergenic
TGGTGCAGGACCCATCACAT+GGG 0.673212 4.4:-38137375 MS.gene45698:CDS
GCAATCTTCAGGTATTCCAG+CGG 0.674448 4.4:+38137841 None:intergenic
AGTAGCCACTAAAATAAACA+AGG 0.678884 4.4:+38137577 None:intergenic
CCAACACTAGTGAGTAACAG+TGG 0.692907 4.4:+38137527 None:intergenic
GACTTCAGCGGTATAGACTG+GGG 0.705438 4.4:+38138664 None:intergenic
ACGACGACCAATCCAGTCGG+AGG 0.711720 4.4:+38138817 None:intergenic
GTAACGACGACCAATCCAGT+CGG 0.738715 4.4:+38138814 None:intergenic
CCATGCCAGAGTCACCACGA+TGG 0.743650 4.4:-38138049 MS.gene45698:CDS
ATATTGTGTCAAGATGAGTG+AGG 0.744896 4.4:-38139327 None:intergenic
ATTATGCTACCTGAAACACA+AGG 0.780195 4.4:-38137167 MS.gene45698:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAATATAATATGAGA+TGG + chr4.4:38137197-38137216 None:intergenic 10.0%
!! ATAAATAACTCTTATAAAAC+TGG - chr4.4:38137927-38137946 MS.gene45698:intron 15.0%
!!! AATGCATAATTTCTTTTAAA+AGG + chr4.4:38138019-38138038 None:intergenic 15.0%
!!! TTTTTTATCTCTATTTATCA+AGG + chr4.4:38137889-38137908 None:intergenic 15.0%
!! ATAACAAGAGGATAAAATAT+TGG + chr4.4:38137344-38137363 None:intergenic 20.0%
!! GAGATAAAAAAAAGTAAAAG+TGG - chr4.4:38137898-38137917 MS.gene45698:intron 20.0%
!! GATAGAATAGTATATTTCAA+TGG - chr4.4:38137961-38137980 MS.gene45698:intron 20.0%
!! TCAAAACTATCACTTAAATT+AGG - chr4.4:38138217-38138236 MS.gene45698:intron 20.0%
!! TCAAATTGATCATTTATTCT+CGG + chr4.4:38138413-38138432 None:intergenic 20.0%
!! TCATAATACACGATAATATA+GGG - chr4.4:38138105-38138124 MS.gene45698:CDS 20.0%
!! TTCATAATACACGATAATAT+AGG - chr4.4:38138104-38138123 MS.gene45698:CDS 20.0%
!!! GTGCTATATTGTTTTATTAA+TGG - chr4.4:38137269-38137288 MS.gene45698:CDS 20.0%
!!! TTTTCATTCATAATAACAAG+AGG + chr4.4:38137356-38137375 None:intergenic 20.0%
! AACTATCACTTAAATTAGGT+TGG - chr4.4:38138221-38138240 MS.gene45698:intron 25.0%
! ATAAACAGTGGAATATTAGT+CGG - chr4.4:38138172-38138191 MS.gene45698:CDS 25.0%
! ATTCAAACACAAAGCTAAAT+TGG - chr4.4:38138900-38138919 MS.gene45698:CDS 25.0%
! CAAGTAAAAGTTAAAAACAC+TGG - chr4.4:38138548-38138567 MS.gene45698:intron 25.0%
! CATAATACACGATAATATAG+GGG - chr4.4:38138106-38138125 MS.gene45698:CDS 25.0%
! GAGAAAATCAAAGAATACTA+AGG - chr4.4:38139249-38139268 MS.gene45698:CDS 25.0%
! GATTCTATATGCAATATATG+TGG + chr4.4:38138058-38138077 None:intergenic 25.0%
! TATATTTCAATGGATGTTAG+TGG - chr4.4:38137971-38137990 MS.gene45698:CDS 25.0%
! TTCAAACACAAAGCTAAATT+GGG - chr4.4:38138901-38138920 MS.gene45698:CDS 25.0%
! TTTACCATATCCAAGTAAAA+TGG + chr4.4:38137161-38137180 None:intergenic 25.0%
!! GTTAGTGGAAAATTTGTTTA+GGG - chr4.4:38137986-38138005 MS.gene45698:CDS 25.0%
!! GTTTCTCTTTGAAGAAAATT+TGG + chr4.4:38137233-38137252 None:intergenic 25.0%
!! TCTTTGAAGAAAATTTGGAT+AGG + chr4.4:38137228-38137247 None:intergenic 25.0%
!! TGTTAGTGGAAAATTTGTTT+AGG - chr4.4:38137985-38138004 MS.gene45698:CDS 25.0%
!! TTTTCAAAGCTCGTTTATTA+TGG - chr4.4:38137780-38137799 MS.gene45698:CDS 25.0%
!!! AAAGCATACTTGTTTCTTTT+AGG + chr4.4:38137109-38137128 None:intergenic 25.0%
!!! GGAGATTTTTTAGAAGTTAA+TGG - chr4.4:38137828-38137847 MS.gene45698:CDS 25.0%
!!! TAAGACCTTGTTTATTTTAG+TGG - chr4.4:38138769-38138788 MS.gene45698:CDS 25.0%
!!! TTAATTGATTTGATATCTGC+AGG - chr4.4:38138144-38138163 MS.gene45698:CDS 25.0%
AAAGTTAAAAACACTGGTGA+AGG - chr4.4:38138554-38138573 MS.gene45698:intron 30.0%
AATCGTAATTCCTTTAGACA+AGG + chr4.4:38139107-38139126 None:intergenic 30.0%
AGGTAAAACACTTGAAGAAA+TGG - chr4.4:38139204-38139223 MS.gene45698:CDS 30.0%
AGTAGCCACTAAAATAAACA+AGG + chr4.4:38138777-38138796 None:intergenic 30.0%
ATATTGTAATAGCTGCACTA+GGG - chr4.4:38138621-38138640 MS.gene45698:intron 30.0%
CTACAATCTTCAAAAAAGCT+GGG - chr4.4:38138696-38138715 MS.gene45698:CDS 30.0%
TATGTAGCAACTTTCTCAAT+TGG - chr4.4:38138956-38138975 MS.gene45698:intron 30.0%
TATTACAATATGACGAACTG+CGG + chr4.4:38138612-38138631 None:intergenic 30.0%
TTGTCTAAAGGAATTACGAT+TGG - chr4.4:38139106-38139125 MS.gene45698:intron 30.0%
! AAGCCTCTTTTGGTAAAATT+TGG - chr4.4:38139227-38139246 MS.gene45698:CDS 30.0%
! ACTTCCATTTTACTTGGATA+TGG - chr4.4:38137154-38137173 MS.gene45698:CDS 30.0%
! ACTTTTATGTTAGACCGATA+TGG - chr4.4:38138794-38138813 MS.gene45698:CDS 30.0%
! GTAGTGAAATTTTTCCTTTG+AGG - chr4.4:38139005-38139024 MS.gene45698:intron 30.0%
! TCTCCAAATTTTACCAAAAG+AGG + chr4.4:38139233-38139252 None:intergenic 30.0%
! TTTCTTTTAGGCTTCTTTTG+TGG + chr4.4:38137097-38137116 None:intergenic 30.0%
!!! AAATTTTTCCTTTGAGGTTG+AGG - chr4.4:38139011-38139030 MS.gene45698:intron 30.0%
!!! AATTTTTCCTTTGAGGTTGA+GGG - chr4.4:38139012-38139031 MS.gene45698:intron 30.0%
!!! CATTTTTTTCAACAAGCTTC+CGG - chr4.4:38138647-38138666 MS.gene45698:CDS 30.0%
AACATGAGGAAGTTGTAGTT+TGG + chr4.4:38137620-38137639 None:intergenic 35.0%
AACTACAACTTCCTCATGTT+TGG - chr4.4:38137620-38137639 MS.gene45698:CDS 35.0%
AAGTTGCACAAGTTCAGTTA+GGG - chr4.4:38139293-38139312 MS.gene45698:CDS 35.0%
ACACGTCATCATACAGATAT+TGG - chr4.4:38137389-38137408 MS.gene45698:CDS 35.0%
ACTACTATAAACCCATGTGA+TGG + chr4.4:38138990-38139009 None:intergenic 35.0%
AGTTGCTATACTCAATCCAA+TGG + chr4.4:38138927-38138946 None:intergenic 35.0%
ATCAACATCTACTCTCTCAT+TGG - chr4.4:38137491-38137510 MS.gene45698:CDS 35.0%
ATTACAATATGACGAACTGC+GGG + chr4.4:38138611-38138630 None:intergenic 35.0%
ATTATGCTACCTGAAACACA+AGG - chr4.4:38139184-38139203 MS.gene45698:intron 35.0%
CAACAAAACTTCAGATTCCA+AGG - chr4.4:38138366-38138385 MS.gene45698:intron 35.0%
CAAGGTCTTAACAAATCCAA+CGG + chr4.4:38138759-38138778 None:intergenic 35.0%
CATATTGTAATAGCTGCACT+AGG - chr4.4:38138620-38138639 MS.gene45698:intron 35.0%
CCTACAATCTTCAAAAAAGC+TGG - chr4.4:38138695-38138714 MS.gene45698:CDS 35.0%
CTACTATAAACCCATGTGAT+GGG + chr4.4:38138989-38139008 None:intergenic 35.0%
TAAAGAAGAGACTAACCTCT+GGG + chr4.4:38137748-38137767 None:intergenic 35.0%
TCCAAGTAAAATGGAAGTCA+TGG + chr4.4:38137152-38137171 None:intergenic 35.0%
TCTAAAGGAATTACGATTGG+TGG - chr4.4:38139109-38139128 MS.gene45698:intron 35.0%
TTAAAGAAGAGACTAACCTC+TGG + chr4.4:38137749-38137768 None:intergenic 35.0%
TTCAAAAAAGCTGGGATCAA+CGG - chr4.4:38138704-38138723 MS.gene45698:CDS 35.0%
TTGAATGATCGATGATCGTA+AGG + chr4.4:38138886-38138905 None:intergenic 35.0%
TTGTAGCAATACCTCCAAAT+AGG + chr4.4:38139144-38139163 None:intergenic 35.0%
! ACTTTTCTGTCCTTGTCTAA+AGG - chr4.4:38139094-38139113 MS.gene45698:intron 35.0%
! AGTGTTTTACCTTGTGTTTC+AGG + chr4.4:38139196-38139215 None:intergenic 35.0%
! TCCATGACTTCCATTTTACT+TGG - chr4.4:38137148-38137167 MS.gene45698:CDS 35.0%
!! ACAGATATTGGTGTTATGAG+TGG - chr4.4:38137401-38137420 MS.gene45698:CDS 35.0%
!! TTGGAGGTATTGCTACAATT+GGG - chr4.4:38139146-38139165 MS.gene45698:intron 35.0%
!! TTTGGAGGTATTGCTACAAT+TGG - chr4.4:38139145-38139164 MS.gene45698:intron 35.0%
!!! CCAGCTTTTTTGAAGATTGT+AGG + chr4.4:38138698-38138717 None:intergenic 35.0%
AACTTCAGATTCCAAGGAAG+AGG - chr4.4:38138372-38138391 MS.gene45698:intron 40.0%
ACAAAGCTAAATTGGGCCAT+TGG - chr4.4:38138908-38138927 MS.gene45698:CDS 40.0%
CAAGTTGCACAAGTTCAGTT+AGG - chr4.4:38139292-38139311 MS.gene45698:CDS 40.0%
CTTAACAAATCCAACGGCTA+TGG + chr4.4:38138753-38138772 None:intergenic 40.0%
GGGAAAGATAGTTGAAGCAA+AGG - chr4.4:38137045-38137064 MS.gene45698:CDS 40.0%
! AAAACACTGGTGAAGGTGTA+TGG - chr4.4:38138561-38138580 MS.gene45698:intron 40.0%
! AGAGACCTTAAAGTATCCGA+CGG - chr4.4:38137443-38137462 MS.gene45698:CDS 40.0%
! CTGCAGGTTTTCATAAACAG+TGG - chr4.4:38138160-38138179 MS.gene45698:CDS 40.0%
! GAAGAAATGGAAGCCTCTTT+TGG - chr4.4:38139217-38139236 MS.gene45698:CDS 40.0%
! GGTGCATTTTTCCTATTTGG+AGG - chr4.4:38139130-38139149 MS.gene45698:intron 40.0%
! GGTGGTGCATTTTTCCTATT+TGG - chr4.4:38139127-38139146 MS.gene45698:intron 40.0%
! TGCTTTTGCTTGTGCTATGT+TGG - chr4.4:38137123-38137142 MS.gene45698:CDS 40.0%
! TTTTCCCGTCGGATACTTTA+AGG + chr4.4:38137451-38137470 None:intergenic 40.0%
!! GGGAAAATTGAGGTCTTGTT+AGG - chr4.4:38137464-38137483 MS.gene45698:CDS 40.0%
!! TTAGGTTGGAGAATGATGCT+TGG - chr4.4:38138235-38138254 MS.gene45698:intron 40.0%
!! TTGTGGTGTTGTGGTGAATA+GGG - chr4.4:38139048-38139067 MS.gene45698:intron 40.0%
ACATCGTCGTTGCAATCTTC+AGG + chr4.4:38138524-38138543 None:intergenic 45.0%
AGACTTCAGCGGTATAGACT+GGG + chr4.4:38137691-38137710 None:intergenic 45.0%
AGTATCCGACGGGAAAATTG+AGG - chr4.4:38137454-38137473 MS.gene45698:CDS 45.0%
CAAAACTACAGCGTCTACAC+CGG + chr4.4:38138669-38138688 None:intergenic 45.0%
CCAACACTAGTGAGTAACAG+TGG + chr4.4:38138827-38138846 None:intergenic 45.0%
CCACTGTTACTCACTAGTGT+TGG - chr4.4:38138824-38138843 MS.gene45698:CDS 45.0%
CTCGTAATGAGAGGTCGTTT+AGG - chr4.4:38138325-38138344 MS.gene45698:intron 45.0%
CTTATTGCAACCATAGCCGT+TGG - chr4.4:38138740-38138759 MS.gene45698:CDS 45.0%
CTTTCTCACTTCTTTCCCAG+AGG - chr4.4:38137730-38137749 MS.gene45698:CDS 45.0%
GCAACTTTCTCAATTGGTGC+AGG - chr4.4:38138962-38138981 MS.gene45698:intron 45.0%
GCAATCTTCAGGTATTCCAG+CGG + chr4.4:38138513-38138532 None:intergenic 45.0%
TAAGGCTCCGGCAAAGAAAA+TGG + chr4.4:38137582-38137601 None:intergenic 45.0%
TGGAGAATGATGCTTGGAGT+AGG - chr4.4:38138241-38138260 MS.gene45698:intron 45.0%
TGGTGAATAGGGTCACTAGT+GGG - chr4.4:38139059-38139078 MS.gene45698:intron 45.0%
TGGTGAGAAACCCATGAGTA+AGG + chr4.4:38137600-38137619 None:intergenic 45.0%
! CAAGACCTCAATTTTCCCGT+CGG + chr4.4:38137462-38137481 None:intergenic 45.0%
! CTGTTACTCACTAGTGTTGG+TGG - chr4.4:38138827-38138846 MS.gene45698:CDS 45.0%
! GAGACCTTAAAGTATCCGAC+GGG - chr4.4:38137444-38137463 MS.gene45698:CDS 45.0%
! TCCAGCGGCTTGTTTAATCT+CGG + chr4.4:38138498-38138517 None:intergenic 45.0%
!! ACTCACTAGTGTTGGTGGTA+TGG - chr4.4:38138832-38138851 MS.gene45698:CDS 45.0%
!! CTCATTGGTTCATGTCTTGC+CGG - chr4.4:38137506-38137525 MS.gene45698:CDS 45.0%
!! CTTGTGGTGTTGTGGTGAAT+AGG - chr4.4:38139047-38139066 MS.gene45698:intron 45.0%
!! GAGGTATTGCTACAATTGGG+TGG - chr4.4:38139149-38139168 MS.gene45698:intron 45.0%
!!! TAAAAAAAAAAGTAAATTTT+AGG - chr4.4:38137807-38137826 MS.gene45698:CDS 5.0%
ACAGTGGACGACGACCATAT+CGG + chr4.4:38138811-38138830 None:intergenic 50.0%
AGAAGTGAGAAAGCCACGAG+AGG + chr4.4:38137723-38137742 None:intergenic 50.0%
ATATGACGAACTGCGGGTGT+AGG + chr4.4:38138605-38138624 None:intergenic 50.0%
CCAACGGCTAGGATTACTGA+AGG + chr4.4:38138274-38138293 None:intergenic 50.0%
CCTTCAGTAATCCTAGCCGT+TGG - chr4.4:38138271-38138290 MS.gene45698:intron 50.0%
CGACAAAACGGCCAAACATG+AGG + chr4.4:38137634-38137653 None:intergenic 50.0%
CGTTACACCATCGTGTTTGC+CGG - chr4.4:38137554-38137573 MS.gene45698:CDS 50.0%
GAAACCCATGAGTAAGGCTC+CGG + chr4.4:38137594-38137613 None:intergenic 50.0%
GACTTCAGCGGTATAGACTG+GGG + chr4.4:38137690-38137709 None:intergenic 50.0%
GAGACTTCAGCGGTATAGAC+TGG + chr4.4:38137692-38137711 None:intergenic 50.0%
GGTGAATAGGGTCACTAGTG+GGG - chr4.4:38139060-38139079 MS.gene45698:intron 50.0%
GTAACGACGACCAATCCAGT+CGG + chr4.4:38137540-38137559 None:intergenic 50.0%
GTGGTGAATAGGGTCACTAG+TGG - chr4.4:38139058-38139077 MS.gene45698:intron 50.0%
TGGCATGGCTAAGACTCCAA+CGG + chr4.4:38138290-38138309 None:intergenic 50.0%
TTTGCCGGAGCCTTACTCAT+GGG - chr4.4:38137587-38137606 MS.gene45698:CDS 50.0%
!! ATGTTTGGCCGTTTTGTCGC+CGG - chr4.4:38137635-38137654 MS.gene45698:CDS 50.0%
AATCCAGTCGGAGGTTCTGC+CGG + chr4.4:38137528-38137547 None:intergenic 55.0%
AGAAAGCCACGAGAGGAAGC+GGG + chr4.4:38137716-38137735 None:intergenic 55.0%
AGCATAGCCGATGCCAACTC+CGG + chr4.4:38137657-38137676 None:intergenic 55.0%
CCAAGGAAGAGGCTCAGCTA+AGG - chr4.4:38138383-38138402 MS.gene45698:intron 55.0%
CCACGATGGCTCGTAATGAG+AGG - chr4.4:38138316-38138335 MS.gene45698:intron 55.0%
CCTCTCATTACGAGCCATCG+TGG + chr4.4:38138319-38138338 None:intergenic 55.0%
CCTTAGCTGAGCCTCTTCCT+TGG + chr4.4:38138386-38138405 None:intergenic 55.0%
CCTTGTGCCCTCAACCTCAA+AGG + chr4.4:38139022-38139041 None:intergenic 55.0%
CTTTGCCGGAGCCTTACTCA+TGG - chr4.4:38137586-38137605 MS.gene45698:CDS 55.0%
GAGAAAGCCACGAGAGGAAG+CGG + chr4.4:38137717-38137736 None:intergenic 55.0%
GCCGAGATTAAACAAGCCGC+TGG - chr4.4:38138494-38138513 MS.gene45698:intron 55.0%
TCCGGCAAAGAAAATGGCGC+CGG + chr4.4:38137576-38137595 None:intergenic 55.0%
TGCCAACTCCGGCGACAAAA+CGG + chr4.4:38137646-38137665 None:intergenic 55.0%
TGGCTAAGACTCCAACGGCT+AGG + chr4.4:38138285-38138304 None:intergenic 55.0%
TGGTGCAGGACCCATCACAT+GGG - chr4.4:38138976-38138995 MS.gene45698:intron 55.0%
TTGGTGCAGGACCCATCACA+TGG - chr4.4:38138975-38138994 MS.gene45698:intron 55.0%
TTTGTCGCCGGAGTTGGCAT+CGG - chr4.4:38137647-38137666 MS.gene45698:CDS 55.0%
! AGGTGCAGCTTGTGGTGTTG+TGG - chr4.4:38139039-38139058 MS.gene45698:intron 55.0%
!! CCTTTGAGGTTGAGGGCACA+AGG - chr4.4:38139019-38139038 MS.gene45698:intron 55.0%
AAAGCCACGAGAGGAAGCGG+GGG + chr4.4:38137714-38137733 None:intergenic 60.0%
ACGACGACCAATCCAGTCGG+AGG + chr4.4:38137537-38137556 None:intergenic 60.0%
ACGAGCCATCGTGGTGACTC+TGG + chr4.4:38138310-38138329 None:intergenic 60.0%
AGGGCACAAGGTGCAGCTTG+TGG - chr4.4:38139031-38139050 MS.gene45698:intron 60.0%
CCATCGTGGTGACTCTGGCA+TGG + chr4.4:38138305-38138324 None:intergenic 60.0%
CCATGCCAGAGTCACCACGA+TGG - chr4.4:38138302-38138321 MS.gene45698:intron 60.0%
GAAAGCCACGAGAGGAAGCG+GGG + chr4.4:38137715-38137734 None:intergenic 60.0%
GGCAGAACCTCCGACTGGAT+TGG - chr4.4:38137527-38137546 MS.gene45698:CDS 60.0%
!! AATGGCGCCGGCAAACACGA+TGG + chr4.4:38137564-38137583 None:intergenic 60.0%
!! GCCGGCGCCATTTTCTTTGC+CGG - chr4.4:38137572-38137591 MS.gene45698:CDS 60.0%
GGAAGCGGGGGAGACTTCAG+CGG + chr4.4:38137702-38137721 None:intergenic 65.0%
TTGCCGGCAGAACCTCCGAC+TGG - chr4.4:38137522-38137541 MS.gene45698:CDS 65.0%
!! GGCCGTTTTGTCGCCGGAGT+TGG - chr4.4:38137641-38137660 MS.gene45698:CDS 65.0%
GTCTCCCCCGCTTCCTCTCG+TGG - chr4.4:38137707-38137726 MS.gene45698:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 38137037 38139336 38137037 ID=MS.gene45698
chr4.4 mRNA 38137037 38139336 38137037 ID=MS.gene45698.t1;Parent=MS.gene45698
chr4.4 exon 38139198 38139336 38139198 ID=MS.gene45698.t1.exon1;Parent=MS.gene45698.t1
chr4.4 CDS 38139198 38139336 38139198 ID=cds.MS.gene45698.t1;Parent=MS.gene45698.t1
chr4.4 exon 38138622 38138968 38138622 ID=MS.gene45698.t1.exon2;Parent=MS.gene45698.t1
chr4.4 CDS 38138622 38138968 38138622 ID=cds.MS.gene45698.t1;Parent=MS.gene45698.t1
chr4.4 exon 38137969 38138207 38137969 ID=MS.gene45698.t1.exon3;Parent=MS.gene45698.t1
chr4.4 CDS 38137969 38138207 38137969 ID=cds.MS.gene45698.t1;Parent=MS.gene45698.t1
chr4.4 exon 38137037 38137883 38137037 ID=MS.gene45698.t1.exon4;Parent=MS.gene45698.t1
chr4.4 CDS 38137037 38137883 38137037 ID=cds.MS.gene45698.t1;Parent=MS.gene45698.t1
Gene Sequence

>MS.gene45698

ATGAGTGAGGGAAAGATAGTTGAAGCAAAGGCTCAAAAAAATCTTCAAGATTTTGATCCACAAAAGAAGCCTAAAAGAAACAAGTATGCTTTTGCTTGTGCTATGTTGGCTTCCATGACTTCCATTTTACTTGGATATGGTAAATAATTACTATACACCATCTCATATTATATTTTATTTATTATACTCCTATCCAAATTTTCTTCAAAGAGAAACAAGTATGATTTTGCTTGTGCTATATTGTTTTATTAATGGTAAATATTAGTACGTTAATTGTTACGTTAGTATTCTCTTTAATCATTTGCCAATATTTTATCCTCTTGTTATTATGAATGAAAAATATTGATTTTTGACACGTCATCATACAGATATTGGTGTTATGAGTGGAGCAGCAATCTACATACAAAGAGACCTTAAAGTATCCGACGGGAAAATTGAGGTCTTGTTAGGAATCATCAACATCTACTCTCTCATTGGTTCATGTCTTGCCGGCAGAACCTCCGACTGGATTGGTCGTCGTTACACCATCGTGTTTGCCGGCGCCATTTTCTTTGCCGGAGCCTTACTCATGGGTTTCTCACCAAACTACAACTTCCTCATGTTTGGCCGTTTTGTCGCCGGAGTTGGCATCGGCTATGCTCTCATGATTGCCCCAGTCTATACCGCTGAAGTCTCCCCCGCTTCCTCTCGTGGCTTTCTCACTTCTTTCCCAGAGGTTAGTCTCTTCTTTAATTTATCTATTTTTTTCAAAGCTCGTTTATTATGGATTATAAAAAAAAAAGTAAATTTTAGGAGATTTTTTAGAAGTTAATGGAACATTTGATAGAATAGTAAATTCTCAATTGAATACCTTGATAAATAGAGATAAAAAAAAGTAAAAGTGGACAAACATAAATAACTCTTATAAAACTGGTGCAATAATTTGATAGAATAGTATATTTCAATGGATGTTAGTGGAAAATTTGTTTAGGGTACATAGCCTTTTAAAAGAAATTATGCATTTCTGTTTTTTTTTTTTCCACATATATTGCATATAGAATCTTTACTAGTAGTATATCTATTTAATATTCATAATACACGATAATATAGGGGTAAAAATTTAACATTTTAATTGATTTGATATCTGCAGGTTTTCATAAACAGTGGAATATTAGTCGGATACATATCAAACTATGCATTTTCAAAACTATCACTTAAATTAGGTTGGAGAATGATGCTTGGAGTAGGTGCAATTCCTTCAGTAATCCTAGCCGTTGGAGTCTTAGCCATGCCAGAGTCACCACGATGGCTCGTAATGAGAGGTCGTTTAGGAGACGCAATAAAAGTACTCAACAAAACTTCAGATTCCAAGGAAGAGGCTCAGCTAAGGTTAGCCGAGAATAAATGATCAATTTGATTGTACTATCTTTATTTTAACATTTGAATGACGCTTATTTTTTTGTCAATAAAATAGATTAGCCGAGATTAAACAAGCCGCTGGAATACCTGAAGATTGCAACGACGATGTTGTTCAAGTAAAAGTTAAAAACACTGGTGAAGGTGTATGGAAAGAGCTTTTTCTTCATCCTACACCCGCAGTTCGTCATATTGTAATAGCTGCACTAGGGATTCATTTTTTTCAACAAGCTTCCGGTGTAGACGCTGTAGTTTTGTATAGTCCTACAATCTTCAAAAAAGCTGGGATCAACGGTGATACGCATCTTCTTATTGCAACCATAGCCGTTGGATTTGTTAAGACCTTGTTTATTTTAGTGGCTACTTTTATGTTAGACCGATATGGTCGTCGTCCACTGTTACTCACTAGTGTTGGTGGTATGGTAGTCTCGCTTCTCACACTCGCTGTCAGCCTTACGATCATCGATCATTCAAACACAAAGCTAAATTGGGCCATTGGATTGAGTATAGCAACTGTTTTGTCATATGTAGCAACTTTCTCAATTGGTGCAGGACCCATCACATGGGTTTATAGTAGTGAAATTTTTCCTTTGAGGTTGAGGGCACAAGGTGCAGCTTGTGGTGTTGTGGTGAATAGGGTCACTAGTGGGGTTATTTCAATGACTTTTCTGTCCTTGTCTAAAGGAATTACGATTGGTGGTGCATTTTTCCTATTTGGAGGTATTGCTACAATTGGGTGGATATTTTTTTATATTATGCTACCTGAAACACAAGGTAAAACACTTGAAGAAATGGAAGCCTCTTTTGGTAAAATTTGGAGAAAATCAAAGAATACTAAGGAAGCTGAAAAAGACAATGCTCAAGTTGCACAAGTTCAGTTAGGGACCAATGTCTCAACTCAGTAG

Protein sequence

>MS.gene45698.t1

MSEGKIVEAKAQKNLQDFDPQKKPKRNKYAFACAMLASMTSILLGYDIGVMSGAAIYIQRDLKVSDGKIEVLLGIINIYSLIGSCLAGRTSDWIGRRYTIVFAGAIFFAGALLMGFSPNYNFLMFGRFVAGVGIGYALMIAPVYTAEVSPASSRGFLTSFPEVFINSGILVGYISNYAFSKLSLKLGWRMMLGVGAIPSVILAVGVLAMPESPRWLVMRGRLGDAIKVLNKTSDSKEEAQLRLAEIKQAAGIPEDCNDDVVQVKVKNTGEGVWKELFLHPTPAVRHIVIAALGIHFFQQASGVDAVVLYSPTIFKKAGINGDTHLLIATIAVGFVKTLFILVATFMLDRYGRRPLLLTSVGGMVVSLLTLAVSLTIIDHSNTKLNWAIGLSIATVLSYVATFSIGAGPITWVYSSEIFPLRLRAQGAACGVVVNRVTSGVISMTFLSLSKGITIGGAFFLFGGIATIGWIFFYIMLPETQGKTLEEMEASFGKIWRKSKNTKEAEKDNAQVAQVQLGTNVSTQ