AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072357

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072357.t1 MTR_7g092450 100.000 145 0 0 1 145 1 145 2.53e-100 284
MS.gene072357.t1 MTR_0019s0160 83.448 145 23 1 1 145 1 144 5.71e-73 215
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072357.t1 AT5G51940 79.452 146 27 2 1 145 1 144 1.97e-70 208
MS.gene072357.t1 AT2G04630 78.082 146 29 2 1 145 1 144 6.51e-69 204

Find 57 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATACTTGGAAGTCCTTC+TGG 0.228416 7.2:+16588727 None:intergenic
CCGCTCTCGTAGCTCCTTCA+TGG 0.261897 7.2:+16586194 None:intergenic
AAGTATGGTACCTCAATTTC+AGG 0.283991 7.2:+16588913 None:intergenic
AGGTCATCATTCTTGTTATC+AGG 0.290460 7.2:+16588812 None:intergenic
ACCACCCACTTGTCTCTTCC+AGG 0.359364 7.2:+16585972 None:intergenic
AAGTAGCGACGGATGGTAAA+AGG 0.371530 7.2:+16586165 None:intergenic
GTCCTTCTGGGACGTTCAAC+CGG 0.388301 7.2:+16588740 None:intergenic
GTACCCGCGCTCTTCAAATC+AGG 0.398664 7.2:-16588676 MS.gene072357:intron
AACTCTTCAGATTGCCATGA+AGG 0.418174 7.2:-16586208 MS.gene072357:intron
ATTGTCCAGCTATGAAGATT+GGG 0.418900 7.2:-16586022 MS.gene072357:intron
ACCAATTGAAACTGAGGAAA+AGG 0.424157 7.2:-16588774 MS.gene072357:CDS
TATGAGCGTGCTAGGATTCT+CGG 0.433316 7.2:-16588698 MS.gene072357:CDS
AATTGTCCAGCTATGAAGAT+TGG 0.435283 7.2:-16586023 MS.gene072357:intron
CTCATACTTAGTCATATACT+TGG 0.444475 7.2:+16588715 None:intergenic
ACCTGTCATGGTTGAGTTGG+AGG 0.445018 7.2:-16587272 MS.gene072357:CDS
AGCTGATTGTGGAAGACTCC+TGG 0.445700 7.2:-16585990 MS.gene072357:CDS
GGTACCTCAATTTCAGGCTC+TGG 0.453336 7.2:+16588919 None:intergenic
AGTAGTATTTACCTTCCATC+AGG 0.479574 7.2:+16586141 None:intergenic
GCCACCAGAGCCTGAAATTG+AGG 0.481155 7.2:-16588923 MS.gene072357:intron
ATATACTTGGAAGTCCTTCT+GGG 0.481308 7.2:+16588728 None:intergenic
CCCTCCAACTCAACCATGAC+AGG 0.481823 7.2:+16587271 None:intergenic
TTCGTAGTCATCGTCGGCCA+TGG 0.482815 7.2:+16589060 None:intergenic
TTGGTTCTCCTTCTGCATCT+AGG 0.484900 7.2:+16588792 None:intergenic
AATGGTTAAATTACCTCAAG+TGG 0.493654 7.2:+16587238 None:intergenic
CCTGTCATGGTTGAGTTGGA+GGG 0.500999 7.2:-16587271 MS.gene072357:CDS
GCAGGAAGGTGCAGAGGAGG+AGG 0.505888 7.2:-16588837 MS.gene072357:intron
ACCTCAATTTCAGGCTCTGG+TGG 0.507724 7.2:+16588922 None:intergenic
GGGAGTTGATGAGCTGATTG+TGG 0.508386 7.2:-16586001 MS.gene072357:CDS
GGAAAAGGAAGATGCTGCTC+CGG 0.509327 7.2:-16588759 MS.gene072357:CDS
TGACTAAGTATGAGCGTGCT+AGG 0.520533 7.2:-16588706 MS.gene072357:CDS
ATCCGTCGCTACTTGCCTGA+TGG 0.540830 7.2:-16586156 MS.gene072357:CDS
TGCACCTGTCATGGTTGAGT+TGG 0.547769 7.2:-16587275 MS.gene072357:CDS
TTCCATCAGGCAAGTAGCGA+CGG 0.559984 7.2:+16586154 None:intergenic
TGTGCAGGAAGGTGCAGAGG+AGG 0.563259 7.2:-16588840 MS.gene072357:intron
GTCGCTACTTGCCTGATGGA+AGG 0.581718 7.2:-16586152 MS.gene072357:intron
AAACCTGATTTGAAGAGCGC+GGG 0.585792 7.2:+16588673 None:intergenic
GACTCCTGGAAGAGACAAGT+GGG 0.586530 7.2:-16585976 MS.gene072357:CDS
AGGAGAACCAATTGAAACTG+AGG 0.593065 7.2:-16588780 MS.gene072357:CDS
CAGTATGAATGCACCTGTCA+TGG 0.596445 7.2:-16587284 MS.gene072357:CDS
CTCCGGTTGAACGTCCCAGA+AGG 0.600340 7.2:-16588742 MS.gene072357:CDS
ATCAGGCAAGTAGCGACGGA+TGG 0.606515 7.2:+16586158 None:intergenic
CTGTCATGGTTGAGTTGGAG+GGG 0.614709 7.2:-16587270 MS.gene072357:CDS
AATGATGACCTAGATGCAGA+AGG 0.620982 7.2:-16588800 MS.gene072357:CDS
TGTCATGGTTGAGTTGGAGG+GGG 0.622677 7.2:-16587269 MS.gene072357:CDS
TAAACCTGATTTGAAGAGCG+CGG 0.623407 7.2:+16588672 None:intergenic
GACTACGAAGATATCGACAT+GGG 0.632471 7.2:-16589046 MS.gene072357:CDS
ATGGTTAAATTACCTCAAGT+GGG 0.636541 7.2:+16587239 None:intergenic
AGACTCCTGGAAGAGACAAG+TGG 0.644950 7.2:-16585977 MS.gene072357:CDS
TTGTCCAGCTATGAAGATTG+GGG 0.646097 7.2:-16586021 MS.gene072357:intron
GATATCTTCGTAGTCATCGT+CGG 0.659789 7.2:+16589054 None:intergenic
TGACTACGAAGATATCGACA+TGG 0.677574 7.2:-16589047 MS.gene072357:CDS
GCATGTGCAGGAAGGTGCAG+AGG 0.686778 7.2:-16588843 MS.gene072357:intron
ATTAAAACGATGCAGGTACG+AGG 0.688503 7.2:-16588950 MS.gene072357:intron
CCATGAAGGAGCTACGAGAG+CGG 0.693186 7.2:-16586194 MS.gene072357:CDS
AAAACGATGCAGGTACGAGG+AGG 0.694919 7.2:-16588947 MS.gene072357:intron
TCCTGGAAGAGACAAGTGGG+TGG 0.726072 7.2:-16585973 MS.gene072357:CDS
ACTACGAAGATATCGACATG+GGG 0.760905 7.2:-16589045 MS.gene072357:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CACATAATTAATAATTAATT+AGG - chr7.2:16586028-16586047 MS.gene072357:intron 10.0%
!!! AATAGGCTTATTTTTATATT+AGG - chr7.2:16588190-16588209 MS.gene072357:intron 15.0%
!!! ATGATTGTTTAAGATTTTAA+AGG + chr7.2:16587672-16587691 None:intergenic 15.0%
!!! CTTCTTTTTTTCTTTAATTA+GGG - chr7.2:16586134-16586153 MS.gene072357:intron 15.0%
!!! TCTTCTTTTTTTCTTTAATT+AGG - chr7.2:16586133-16586152 MS.gene072357:intron 15.0%
!! AAAGAAAAAAAGAAGAAGTA+TGG + chr7.2:16586129-16586148 None:intergenic 20.0%
!! AAATTGAACTATGTTAACAT+GGG - chr7.2:16586617-16586636 MS.gene072357:intron 20.0%
!! AATAAGCAAAATCATACATA+GGG + chr7.2:16586394-16586413 None:intergenic 20.0%
!! ATTTATGTAACATGCAATAA+AGG + chr7.2:16587243-16587262 None:intergenic 20.0%
!! TAAATTGAACTATGTTAACA+TGG - chr7.2:16586616-16586635 MS.gene072357:intron 20.0%
!! TACTGTTTGTTTATTAAGTT+GGG - chr7.2:16588902-16588921 MS.gene072357:intron 20.0%
!! TGAAAATTATAGCATAAACT+GGG - chr7.2:16588336-16588355 MS.gene072357:intron 20.0%
!! TTAAATCCTAAATTAACATG+TGG + chr7.2:16588504-16588523 None:intergenic 20.0%
!! TTAACATATACTTGTGTAAT+AGG - chr7.2:16586647-16586666 MS.gene072357:intron 20.0%
!! TTAGGATTTAAATATTCTCA+TGG - chr7.2:16588513-16588532 MS.gene072357:intron 20.0%
!! TTGAAAATTATAGCATAAAC+TGG - chr7.2:16588335-16588354 MS.gene072357:intron 20.0%
!! TTTAAAAAAAGTTTCATCGA+TGG + chr7.2:16588402-16588421 None:intergenic 20.0%
!! TTTCTATATTTCAATTGAGT+GGG + chr7.2:16587921-16587940 None:intergenic 20.0%
!!! TTTTCTATATTTCAATTGAG+TGG + chr7.2:16587922-16587941 None:intergenic 20.0%
! AAACAACTTATCAATAGAGT+AGG - chr7.2:16587326-16587345 MS.gene072357:intron 25.0%
! AAGTTGTCAAACAAAATTTG+AGG - chr7.2:16586944-16586963 MS.gene072357:intron 25.0%
! ACATACATGTATAGTAACAA+GGG - chr7.2:16588100-16588119 MS.gene072357:intron 25.0%
! ACTCTATTGATAAGTTGTTT+GGG + chr7.2:16587326-16587345 None:intergenic 25.0%
! AGATCAATAAAGTAGAAGTA+AGG + chr7.2:16587963-16587982 None:intergenic 25.0%
! ATTAGTATTTGTGTTAGCTA+TGG - chr7.2:16586415-16586434 MS.gene072357:intron 25.0%
! CTAACAAAAAGTTCTTTCAA+CGG + chr7.2:16587649-16587668 None:intergenic 25.0%
! CTACTGTTTGTTTATTAAGT+TGG - chr7.2:16588901-16588920 MS.gene072357:intron 25.0%
! GAATAAGCAAAATCATACAT+AGG + chr7.2:16586395-16586414 None:intergenic 25.0%
! TACTCTATTGATAAGTTGTT+TGG + chr7.2:16587327-16587346 None:intergenic 25.0%
! TGATAATTAAGTTCTTGTTG+AGG - chr7.2:16586837-16586856 MS.gene072357:intron 25.0%
! TTCTATATTTCAATTGAGTG+GGG + chr7.2:16587920-16587939 None:intergenic 25.0%
!! AACTTTTATGTTGGAGAATA+TGG + chr7.2:16586863-16586882 None:intergenic 25.0%
!! ACATAAATTGACAAGCTTTT+TGG - chr7.2:16587255-16587274 MS.gene072357:CDS 25.0%
!! TGCTATAATTTTCAAAGTTC+AGG + chr7.2:16588330-16588349 None:intergenic 25.0%
!! TGTATGTTCTAAATAGAGTA+AGG + chr7.2:16586589-16586608 None:intergenic 25.0%
!! TTGCAACTTTTATTGAAGTA+TGG + chr7.2:16587378-16587397 None:intergenic 25.0%
!!! AAAAATAAGCCTATTTCTGA+TGG + chr7.2:16588185-16588204 None:intergenic 25.0%
!!! ATCAATGGGTTATGTAAAAT+GGG - chr7.2:16586445-16586464 MS.gene072357:intron 25.0%
!!! GTTTTATTTTTAGAGTCCTT+TGG - chr7.2:16588552-16588571 MS.gene072357:intron 25.0%
!!! TCCATATTTTTTTGTTGTGT+TGG - chr7.2:16588715-16588734 MS.gene072357:CDS 25.0%
AATGGTTAAATTACCTCAAG+TGG + chr7.2:16587789-16587808 None:intergenic 30.0%
ACAAGAAAGACAACAAGTTA+TGG + chr7.2:16587712-16587731 None:intergenic 30.0%
ACATGTATGTCAGCATATAT+TGG + chr7.2:16588090-16588109 None:intergenic 30.0%
ACTGATACAAAATGAAACCA+TGG + chr7.2:16588746-16588765 None:intergenic 30.0%
ATAACATGTAGCAATACCAA+AGG + chr7.2:16588571-16588590 None:intergenic 30.0%
ATACAAACAAGATCAACATC+TGG + chr7.2:16588030-16588049 None:intergenic 30.0%
ATCAATGGATGATGTAAAAC+AGG + chr7.2:16586498-16586517 None:intergenic 30.0%
ATCTGACCACATGTTAATTT+AGG - chr7.2:16588495-16588514 MS.gene072357:intron 30.0%
ATCTTAAACAATCATACTGC+AGG - chr7.2:16587677-16587696 MS.gene072357:intron 30.0%
ATGGTTAAATTACCTCAAGT+GGG + chr7.2:16587788-16587807 None:intergenic 30.0%
ATTGCAATATGAACCTTACA+AGG + chr7.2:16587301-16587320 None:intergenic 30.0%
CTCATACTTAGTCATATACT+TGG + chr7.2:16586312-16586331 None:intergenic 30.0%
CTCTATTGATAAGTTGTTTG+GGG + chr7.2:16587325-16587344 None:intergenic 30.0%
CTGAACAAATGAACTATAAC+AGG + chr7.2:16588227-16588246 None:intergenic 30.0%
GACATACATGTATAGTAACA+AGG - chr7.2:16588099-16588118 MS.gene072357:intron 30.0%
GATCAAATTCCATCAGAAAT+AGG - chr7.2:16588173-16588192 MS.gene072357:intron 30.0%
GCCAACACAACAAAAAAATA+TGG + chr7.2:16588719-16588738 None:intergenic 30.0%
TAAGAAATCTACATACGTGT+CGG - chr7.2:16586799-16586818 MS.gene072357:intron 30.0%
TGATCTCGTCTTCAAAATAT+AGG + chr7.2:16588158-16588177 None:intergenic 30.0%
TTTACATCATCCATTGATCA+AGG - chr7.2:16586500-16586519 MS.gene072357:intron 30.0%
! AGCTTTTTGGACAACAAAAT+AGG - chr7.2:16587268-16587287 MS.gene072357:CDS 30.0%
! CTTTCTCCCTTTAAAGAAAA+AGG - chr7.2:16588303-16588322 MS.gene072357:intron 30.0%
! TATGCTTAGATCATTGACTA+TGG - chr7.2:16588047-16588066 MS.gene072357:intron 30.0%
! TCAGGACCTTTTTCTTTAAA+GGG + chr7.2:16588312-16588331 None:intergenic 30.0%
! TTATGTCGTACTTACCATTT+TGG - chr7.2:16588977-16588996 MS.gene072357:intron 30.0%
! TTCAGGACCTTTTTCTTTAA+AGG + chr7.2:16588313-16588332 None:intergenic 30.0%
! TTTTATTGAAGTATGGTGCT+TGG + chr7.2:16587371-16587390 None:intergenic 30.0%
!! GATCAATGGGTTATGTAAAA+TGG - chr7.2:16586444-16586463 MS.gene072357:intron 30.0%
AAAGTACAAGCTATGGACAA+TGG + chr7.2:16588270-16588289 None:intergenic 35.0%
AAGTACGACATAAAAGATGG+AGG + chr7.2:16588970-16588989 None:intergenic 35.0%
AAGTATGGTACCTCAATTTC+AGG + chr7.2:16586114-16586133 None:intergenic 35.0%
AATTGTCCAGCTATGAAGAT+TGG - chr7.2:16589001-16589020 MS.gene072357:intron 35.0%
ACCAATTGAAACTGAGGAAA+AGG - chr7.2:16586250-16586269 MS.gene072357:intron 35.0%
ACTCATGATTAAAACGATGC+AGG - chr7.2:16586067-16586086 MS.gene072357:intron 35.0%
AGCTATGGAATCTTGATCAA+TGG - chr7.2:16586430-16586449 MS.gene072357:intron 35.0%
AGCTGTAAAAACGAATACTC+AGG + chr7.2:16587210-16587229 None:intergenic 35.0%
AGGGGAGAATTTAAACCAAA+CGG + chr7.2:16587562-16587581 None:intergenic 35.0%
AGTAGTATTTACCTTCCATC+AGG + chr7.2:16588886-16588905 None:intergenic 35.0%
ATAGAGTAAGGATGAGAAAG+AGG + chr7.2:16586577-16586596 None:intergenic 35.0%
ATATACTTGGAAGTCCTTCT+GGG + chr7.2:16586299-16586318 None:intergenic 35.0%
ATGTGCAATTGTGCATTACA+TGG + chr7.2:16588004-16588023 None:intergenic 35.0%
ATTGTCCAGCTATGAAGATT+GGG - chr7.2:16589002-16589021 MS.gene072357:intron 35.0%
CAAAAATCCAGAATAGATGC+TGG - chr7.2:16587119-16587138 MS.gene072357:intron 35.0%
CAGTACTGTAACAAGAAAGA+AGG + chr7.2:16587833-16587852 None:intergenic 35.0%
CATGGTACACTACTTAATGA+AGG + chr7.2:16587986-16588005 None:intergenic 35.0%
CATTGATCAAGGTAACCAAA+AGG - chr7.2:16586511-16586530 MS.gene072357:intron 35.0%
CATTTGTTCAGCTTGTAGAT+TGG - chr7.2:16588236-16588255 MS.gene072357:intron 35.0%
GCATAGTAGTGTATTGTACT+GGG + chr7.2:16587486-16587505 None:intergenic 35.0%
GCTATGGAATCTTGATCAAT+GGG - chr7.2:16586431-16586450 MS.gene072357:intron 35.0%
GGTAAGTACGACATAAAAGA+TGG + chr7.2:16588973-16588992 None:intergenic 35.0%
TGAATCGCAAAGAGATCAAA+TGG + chr7.2:16587807-16587826 None:intergenic 35.0%
TGATGTAAAACAGGACAAAC+TGG + chr7.2:16586489-16586508 None:intergenic 35.0%
TGCATAGTAGTGTATTGTAC+TGG + chr7.2:16587487-16587506 None:intergenic 35.0%
TTTCAAGAAGCTTGACAGTT+AGG + chr7.2:16587420-16587439 None:intergenic 35.0%
! AGGTCATCATTCTTGTTATC+AGG + chr7.2:16586215-16586234 None:intergenic 35.0%
! AGTTGGGTACTTCTTTTTCT+TGG - chr7.2:16588918-16588937 MS.gene072357:intron 35.0%
! CTTTTGTCAAAAAGTTGCCT+TGG + chr7.2:16587613-16587632 None:intergenic 35.0%
! GGAGTTGACAACTTTTATGT+TGG + chr7.2:16586872-16586891 None:intergenic 35.0%
! GGTACTTCTTTTTCTTGGAT+GGG - chr7.2:16588923-16588942 MS.gene072357:intron 35.0%
! TCCTTTTCCTCAGTTTCAAT+TGG + chr7.2:16586254-16586273 None:intergenic 35.0%
!! AAAATTTGAGGAGTGCTGAA+AGG - chr7.2:16586956-16586975 MS.gene072357:intron 35.0%
!! CTTTTGGTTACCTTGATCAA+TGG + chr7.2:16586513-16586532 None:intergenic 35.0%
AACTCTTCAGATTGCCATGA+AGG - chr7.2:16588816-16588835 MS.gene072357:CDS 40.0%
AATGATGACCTAGATGCAGA+AGG - chr7.2:16586224-16586243 MS.gene072357:intron 40.0%
ACAATGACTAAATGCCCGTT+TGG - chr7.2:16587544-16587563 MS.gene072357:intron 40.0%
ACACAGAAGCTGAAATCCTA+TGG + chr7.2:16587011-16587030 None:intergenic 40.0%
ACTACGAAGATATCGACATG+GGG - chr7.2:16585979-16585998 MS.gene072357:CDS 40.0%
ACTCCAGTGGTTTCTAATCT+AGG + chr7.2:16587044-16587063 None:intergenic 40.0%
AGACATCCAACGAAAATTCG+TGG + chr7.2:16586703-16586722 None:intergenic 40.0%
AGGAGAACCAATTGAAACTG+AGG - chr7.2:16586244-16586263 MS.gene072357:intron 40.0%
ATTAAAACGATGCAGGTACG+AGG - chr7.2:16586074-16586093 MS.gene072357:intron 40.0%
CATATACTTGGAAGTCCTTC+TGG + chr7.2:16586300-16586319 None:intergenic 40.0%
CGAATACTCAGGTATCTTAG+AGG + chr7.2:16587199-16587218 None:intergenic 40.0%
GACTACGAAGATATCGACAT+GGG - chr7.2:16585978-16585997 MS.gene072357:CDS 40.0%
GAGGATTGCATTATGAGACA+AGG - chr7.2:16586912-16586931 MS.gene072357:intron 40.0%
GATATCTTCGTAGTCATCGT+CGG + chr7.2:16585973-16585992 None:intergenic 40.0%
GCTTGACAGTTAGGTTAAGT+TGG + chr7.2:16587411-16587430 None:intergenic 40.0%
GGGGAGAATTTAAACCAAAC+GGG + chr7.2:16587561-16587580 None:intergenic 40.0%
GTAAAACAGGACAAACTGGA+AGG + chr7.2:16586485-16586504 None:intergenic 40.0%
TACAAGCTATGGACAATGGT+TGG + chr7.2:16588266-16588285 None:intergenic 40.0%
TAGCTGGACAATTGCCAAAA+TGG + chr7.2:16588994-16589013 None:intergenic 40.0%
TGAACATAGATCACAGCCAT+AGG - chr7.2:16586992-16587011 MS.gene072357:intron 40.0%
TGACTACGAAGATATCGACA+TGG - chr7.2:16585977-16585996 MS.gene072357:CDS 40.0%
TGGACAACAAAATAGGTTGC+AGG - chr7.2:16587275-16587294 MS.gene072357:CDS 40.0%
TTCATGGCAATCTGAAGAGT+TGG + chr7.2:16588817-16588836 None:intergenic 40.0%
TTGTCCAGCTATGAAGATTG+GGG - chr7.2:16589003-16589022 MS.gene072357:intron 40.0%
! AACCACTGGAGTTTTCTTCA+TGG - chr7.2:16587052-16587071 MS.gene072357:intron 40.0%
! ACTTCTTTTTCTTGGATGGG+AGG - chr7.2:16588926-16588945 MS.gene072357:CDS 40.0%
! AGCCAAGAAAGTACAAGCTA+TGG + chr7.2:16588277-16588296 None:intergenic 40.0%
! CTTCTTTTTCTTGGATGGGA+GGG - chr7.2:16588927-16588946 MS.gene072357:CDS 40.0%
! GGATTTTTGTGATGCAGACT+AGG + chr7.2:16587108-16587127 None:intergenic 40.0%
! GGGTACTTCTTTTTCTTGGA+TGG - chr7.2:16588922-16588941 MS.gene072357:intron 40.0%
! GTCCATAGCTTGTACTTTCT+TGG - chr7.2:16588272-16588291 MS.gene072357:intron 40.0%
! TAAACCTGATTTGAAGAGCG+CGG + chr7.2:16586355-16586374 None:intergenic 40.0%
! TAGCTTGTACTTTCTTGGCT+CGG - chr7.2:16588277-16588296 MS.gene072357:intron 40.0%
! TTGATGATTGATGCATGTGC+AGG - chr7.2:16586169-16586188 MS.gene072357:CDS 40.0%
! TTTCCTCCACGAATTTTCGT+TGG - chr7.2:16586694-16586713 MS.gene072357:intron 40.0%
AACTCCCCAATCTTCATAGC+TGG + chr7.2:16589010-16589029 None:intergenic 45.0%
AAGTAGCGACGGATGGTAAA+AGG + chr7.2:16588862-16588881 None:intergenic 45.0%
ACCATCCTGAGTTTGTCTCT+AGG - chr7.2:16586739-16586758 MS.gene072357:intron 45.0%
ACCTAGAGACAAACTCAGGA+TGG + chr7.2:16586743-16586762 None:intergenic 45.0%
AGCTTGTACTTTCTTGGCTC+GGG - chr7.2:16588278-16588297 MS.gene072357:intron 45.0%
AGTAAGGATGAGAAAGAGGC+TGG + chr7.2:16586573-16586592 None:intergenic 45.0%
AGTTGTCAACTCCACTTGCA+TGG - chr7.2:16586879-16586898 MS.gene072357:intron 45.0%
ATGGGGGAAAACACTTACCA+AGG - chr7.2:16587593-16587612 MS.gene072357:intron 45.0%
CACAACCTAGAGACAAACTC+AGG + chr7.2:16586747-16586766 None:intergenic 45.0%
CAGTATGAATGCACCTGTCA+TGG - chr7.2:16587740-16587759 MS.gene072357:intron 45.0%
CATCCAACGAAAATTCGTGG+AGG + chr7.2:16586700-16586719 None:intergenic 45.0%
CATGGTTCACTCCTACAGAA+CGG + chr7.2:16587159-16587178 None:intergenic 45.0%
CCACAAAAGAACCATGCAAG+TGG + chr7.2:16586893-16586912 None:intergenic 45.0%
CTGCCTAGATTAGAAACCAC+TGG - chr7.2:16587038-16587057 MS.gene072357:intron 45.0%
GACAGAACCAGCATCTATTC+TGG + chr7.2:16587129-16587148 None:intergenic 45.0%
GTCCATGAAGAAAACTCCAG+TGG + chr7.2:16587057-16587076 None:intergenic 45.0%
TATGAGCGTGCTAGGATTCT+CGG - chr7.2:16586326-16586345 MS.gene072357:intron 45.0%
TCTCTAGGTTGTGAAACGCA+GGG - chr7.2:16586754-16586773 MS.gene072357:intron 45.0%
TGACTAAGTATGAGCGTGCT+AGG - chr7.2:16586318-16586337 MS.gene072357:intron 45.0%
TGATTGATGCATGTGCAGGA+AGG - chr7.2:16586173-16586192 MS.gene072357:CDS 45.0%
TTTCTTGGATGGGAGGGTTA+AGG - chr7.2:16588933-16588952 MS.gene072357:CDS 45.0%
! AAACCTGATTTGAAGAGCGC+GGG + chr7.2:16586354-16586373 None:intergenic 45.0%
! AATAGGTTGCAGGCCTTGTA+AGG - chr7.2:16587285-16587304 MS.gene072357:intron 45.0%
! CATTGCTCTTGCTTGCCTTT+TGG + chr7.2:16586529-16586548 None:intergenic 45.0%
! CCACTTGCATGGTTCTTTTG+TGG - chr7.2:16586890-16586909 MS.gene072357:intron 45.0%
! CTTGCATGGTTCTTTTGTGG+AGG - chr7.2:16586893-16586912 MS.gene072357:intron 45.0%
! TGTCAGGTTTTCCGTTCTGT+AGG - chr7.2:16587145-16587164 MS.gene072357:intron 45.0%
! TTGGTTCTCCTTCTGCATCT+AGG + chr7.2:16586235-16586254 None:intergenic 45.0%
!! CTTAGAGGCACTATCACTCA+AGG + chr7.2:16587184-16587203 None:intergenic 45.0%
!! GAATAGATGCTGGTTCTGTC+AGG - chr7.2:16587129-16587148 MS.gene072357:intron 45.0%
!! TCTACATACGTGTCGGTTGT+TGG - chr7.2:16586806-16586825 MS.gene072357:intron 45.0%
!! ACATAATTAATAATTAATTA+GGG - chr7.2:16586029-16586048 MS.gene072357:intron 5.0%
AAAACGATGCAGGTACGAGG+AGG - chr7.2:16586077-16586096 MS.gene072357:intron 50.0%
AGACTCCTGGAAGAGACAAG+TGG - chr7.2:16589047-16589066 MS.gene072357:CDS 50.0%
AGCTGATTGTGGAAGACTCC+TGG - chr7.2:16589034-16589053 MS.gene072357:intron 50.0%
CGTTCTGTAGGAGTGAACCA+TGG - chr7.2:16587157-16587176 MS.gene072357:intron 50.0%
CTCTAGGTTGTGAAACGCAG+GGG - chr7.2:16586755-16586774 MS.gene072357:intron 50.0%
GACTCCTGGAAGAGACAAGT+GGG - chr7.2:16589048-16589067 MS.gene072357:CDS 50.0%
GCACTATCACTCAAGGACCA+TGG + chr7.2:16587177-16587196 None:intergenic 50.0%
GGAAAAGGAAGATGCTGCTC+CGG - chr7.2:16586265-16586284 MS.gene072357:intron 50.0%
GGTACCTCAATTTCAGGCTC+TGG + chr7.2:16586108-16586127 None:intergenic 50.0%
GTCTCTAGGTTGTGAAACGC+AGG - chr7.2:16586753-16586772 MS.gene072357:intron 50.0%
TCCCCCATAGTAGTCAGTGA+GGG + chr7.2:16587581-16587600 None:intergenic 50.0%
TGCACCTGTCATGGTTGAGT+TGG - chr7.2:16587749-16587768 MS.gene072357:intron 50.0%
TGTGTATCCCTAACCACCGA+TGG - chr7.2:16586547-16586566 MS.gene072357:intron 50.0%
TTCCATCAGGCAAGTAGCGA+CGG + chr7.2:16588873-16588892 None:intergenic 50.0%
TTCCCCCATAGTAGTCAGTG+AGG + chr7.2:16587582-16587601 None:intergenic 50.0%
! ACCTCAATTTCAGGCTCTGG+TGG + chr7.2:16586105-16586124 None:intergenic 50.0%
! ATGAGAAAGAGGCTGGCCAT+CGG + chr7.2:16586566-16586585 None:intergenic 50.0%
! CTCCCCTCACTGACTACTAT+GGG - chr7.2:16587575-16587594 MS.gene072357:intron 50.0%
! TCCCCTCACTGACTACTATG+GGG - chr7.2:16587576-16587595 MS.gene072357:intron 50.0%
! TCTCCCCTCACTGACTACTA+TGG - chr7.2:16587574-16587593 MS.gene072357:intron 50.0%
!! ACCTGTCATGGTTGAGTTGG+AGG - chr7.2:16587752-16587771 MS.gene072357:intron 50.0%
!! CCTGTCATGGTTGAGTTGGA+GGG - chr7.2:16587753-16587772 MS.gene072357:intron 50.0%
!! CTGTCATGGTTGAGTTGGAG+GGG - chr7.2:16587754-16587773 MS.gene072357:intron 50.0%
!! GCTTGGTGCAATCTCTAAGC+AGG + chr7.2:16587354-16587373 None:intergenic 50.0%
!! GGGAGTTGATGAGCTGATTG+TGG - chr7.2:16589023-16589042 MS.gene072357:intron 50.0%
!! TGTCATGGTTGAGTTGGAGG+GGG - chr7.2:16587755-16587774 MS.gene072357:intron 50.0%
!! TTGTTGTGTTGGCTCTGCCA+TGG - chr7.2:16588726-16588745 MS.gene072357:CDS 50.0%
ACCACCCACTTGTCTCTTCC+AGG + chr7.2:16589055-16589074 None:intergenic 55.0%
ATCAGGCAAGTAGCGACGGA+TGG + chr7.2:16588869-16588888 None:intergenic 55.0%
ATCCGTCGCTACTTGCCTGA+TGG - chr7.2:16588868-16588887 MS.gene072357:intron 55.0%
CCATGAAGGAGCTACGAGAG+CGG - chr7.2:16588830-16588849 MS.gene072357:CDS 55.0%
CCCCCATAGTAGTCAGTGAG+GGG + chr7.2:16587580-16587599 None:intergenic 55.0%
CCCTCCAACTCAACCATGAC+AGG + chr7.2:16587756-16587775 None:intergenic 55.0%
GCCACCAGAGCCTGAAATTG+AGG - chr7.2:16586101-16586120 MS.gene072357:intron 55.0%
GTACCCGCGCTCTTCAAATC+AGG - chr7.2:16586348-16586367 MS.gene072357:intron 55.0%
GTCGCTACTTGCCTGATGGA+AGG - chr7.2:16588872-16588891 MS.gene072357:intron 55.0%
TCCTGGAAGAGACAAGTGGG+TGG - chr7.2:16589051-16589070 MS.gene072357:CDS 55.0%
! CCCCTCACTGACTACTATGG+GGG - chr7.2:16587577-16587596 MS.gene072357:intron 55.0%
!! GTCCTTCTGGGACGTTCAAC+CGG + chr7.2:16586287-16586306 None:intergenic 55.0%
CCGCTCTCGTAGCTCCTTCA+TGG + chr7.2:16588833-16588852 None:intergenic 60.0%
CTCCGGTTGAACGTCCCAGA+AGG - chr7.2:16586282-16586301 MS.gene072357:intron 60.0%
GGGGGAAACTGACCCACTTG+AGG - chr7.2:16587773-16587792 MS.gene072357:intron 60.0%
! AGAAAGAGGCTGGCCATCGG+TGG + chr7.2:16586563-16586582 None:intergenic 60.0%
! AGGCTGGCCATCGGTGGTTA+GGG + chr7.2:16586557-16586576 None:intergenic 60.0%
! GCATGTGCAGGAAGGTGCAG+AGG - chr7.2:16586181-16586200 MS.gene072357:CDS 60.0%
! TGTGCAGGAAGGTGCAGAGG+AGG - chr7.2:16586184-16586203 MS.gene072357:CDS 60.0%
! GAGGCTGGCCATCGGTGGTT+AGG + chr7.2:16586558-16586577 None:intergenic 65.0%
! GCAGGAAGGTGCAGAGGAGG+AGG - chr7.2:16586187-16586206 MS.gene072357:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 16585966 16589080 16585966 ID=MS.gene072357
chr7.2 mRNA 16585966 16589080 16585966 ID=MS.gene072357.t1;Parent=MS.gene072357
chr7.2 exon 16589046 16589080 16589046 ID=MS.gene072357.t1.exon1;Parent=MS.gene072357.t1
chr7.2 CDS 16589046 16589080 16589046 ID=cds.MS.gene072357.t1;Parent=MS.gene072357.t1
chr7.2 exon 16588924 16588957 16588924 ID=MS.gene072357.t1.exon2;Parent=MS.gene072357.t1
chr7.2 CDS 16588924 16588957 16588924 ID=cds.MS.gene072357.t1;Parent=MS.gene072357.t1
chr7.2 exon 16588677 16588855 16588677 ID=MS.gene072357.t1.exon3;Parent=MS.gene072357.t1
chr7.2 CDS 16588677 16588855 16588677 ID=cds.MS.gene072357.t1;Parent=MS.gene072357.t1
chr7.2 exon 16587252 16587303 16587252 ID=MS.gene072357.t1.exon4;Parent=MS.gene072357.t1
chr7.2 CDS 16587252 16587303 16587252 ID=cds.MS.gene072357.t1;Parent=MS.gene072357.t1
chr7.2 exon 16586153 16586220 16586153 ID=MS.gene072357.t1.exon5;Parent=MS.gene072357.t1
chr7.2 CDS 16586153 16586220 16586153 ID=cds.MS.gene072357.t1;Parent=MS.gene072357.t1
chr7.2 exon 16585966 16586035 16585966 ID=MS.gene072357.t1.exon6;Parent=MS.gene072357.t1
chr7.2 CDS 16585966 16586035 16585966 ID=cds.MS.gene072357.t1;Parent=MS.gene072357.t1
Gene Sequence

>MS.gene072357

ATGGCCGACGATGACTACGAAGATATCGACATGGGGTTCTCTTTCTCTTTCTCTCTCTCACTCACATAATTAATAATTAATTAGGGTTTGTATTATTTTTTACTCATGATTAAAACGATGCAGGTACGAGGAGGAGCCACCAGAGCCTGAAATTGAGGTACCATACTTCTTCTTTTTTTCTTTAATTAGGGTTTATGAAATTGTTGATGATTGATGCATGTGCAGGAAGGTGCAGAGGAGGAGGATCCTGATAACAAGAATGATGACCTAGATGCAGAAGGAGAACCAATTGAAACTGAGGAAAAGGAAGATGCTGCTCCGGTTGAACGTCCCAGAAGGACTTCCAAGTATATGACTAAGTATGAGCGTGCTAGGATTCTCGGTACCCGCGCTCTTCAAATCAGGTTTACAGCTTAATTTCATCACCCTATGTATGATTTTGCTTATTCATTAGTATTTGTGTTAGCTATGGAATCTTGATCAATGGGTTATGTAAAATGGGACAAGCACGAGCTTCCTTCCAGTTTGTCCTGTTTTACATCATCCATTGATCAAGGTAACCAAAAGGCAAGCAAGAGCAATGTGTATCCCTAACCACCGATGGCCAGCCTCTTTCTCATCCTTACTCTATTTAGAACATACAATTAAATTAAATTGAACTATGTTAACATGGGTCTGCGCTTAACATATACTTGTGTAATAGGAACTCTACTAACAGTATTCTTGTATTTCCTCCACGAATTTTCGTTGGATGTCTAAGAACAAATTTGTCAACCATCCTGAGTTTGTCTCTAGGTTGTGAAACGCAGGGGAGAGAGAGAGAGACAATTTGTTAAGAAATCTACATACGTGTCGGTTGTTGGAATATGACTGATAATTAAGTTCTTGTTGAGGCCATATTCTCCAACATAAAAGTTGTCAACTCCACTTGCATGGTTCTTTTGTGGAGGATTGCATTATGAGACAAGGATACTGCTCAAGTTGTCAAACAAAATTTGAGGAGTGCTGAAAGGAATCTGAAGTTCGTGAACATAGATCACAGCCATAGGATTTCAGCTTCTGTGTTCTGCTTCTGCCTAGATTAGAAACCACTGGAGTTTTCTTCATGGACATAGACTTACTGACATCTGAGTCAGATGCCTAGTCTGCATCACAAAAATCCAGAATAGATGCTGGTTCTGTCAGGTTTTCCGTTCTGTAGGAGTGAACCATGGTCCTTGAGTGATAGTGCCTCTAAGATACCTGAGTATTCGTTTTTACAGCTTTCTAATGCTCCTTTATTGCATGTTACATAAATTGACAAGCTTTTTGGACAACAAAATAGGTTGCAGGCCTTGTAAGGTTCATATTGCAATGCCCCAAACAACTTATCAATAGAGTAGGATCCTGCTTAGAGATTGCACCAAGCACCATACTTCAATAAAAGTTGCAATAACTAACTGCCAACTTAACCTAACTGTCAAGCTTCTTGAAAGAGAACTAATTCTCTGCACAGTGAGCTTACAAAGAATGCAAAACCCAGTACAATACACTACTATGCAATATGCATATTAAAAACAACAATGACTAAATGAAACAACAATGACTAAATGCCCGTTTGGTTTAAATTCTCCCCTCACTGACTACTATGGGGGAAAACACTTACCAAGGCAACTTTTTGACAAAAGTTACTTTTTTCTTCCGTTGAAAGAACTTTTTGTTAGCCTTTAAAATCTTAAACAATCATACTGCAGGTCTAATATGCCATAACTTGTTGTCTTTCTTGTTGTATGTGCAGTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGAGGTAATTTAACCATTTGATCTCTTTGCGATTCAATACCTTCTTTCTTGTTACAGTACTGCATTTGACTACTAATTGTGAGAATATCGTTGTCAAATTTTCAAACATATGTCAGTTGCGCTATGCCCCACTCAATTGAAATATAGAAAATGATTCATTACGAAGCTTCCTTACTTCTACTTTATTGATCTCCTTCATTAAGTAGTGTACCATGTAATGCACAATTGCACATACTCCAGATGTTGATCTTGTTTGTATGCTTAGATCATTGACTATGGTCAACTATACAGTTGTACCAATATATGCTGACATACATGTATAGTAACAAGGGTTTCATCTTCTCATATATTCATTTTCAATTAACCTATATTTTGAAGACGAGATCAAATTCCATCAGAAATAGGCTTATTTTTATATTAGGTTTAATAAATTCCTGTTATAGTTCATTTGTTCAGCTTGTAGATTGGTTTTCCAACCATTGTCCATAGCTTGTACTTTCTTGGCTCGGGATCTTTCTCCCTTTAAAGAAAAAGGTCCTGAACTTTGAAAATTATAGCATAAACTGGGTTGTTCTTCAGTTTGACAGTCGCATGATTTTTTCAATGTTCCATCGATGAAACTTTTTTTAAAAAATTATATAAGACTGTCATCATGACTTCGCTGAACTGATATCTTTGATGAAATTCTTGTCTTCTAATGTTGAATCTGACCACATGTTAATTTAGGATTTAAATATTCTCATGGTTGAGTAGTGTATCTTGTTTTATTTTTAGAGTCCTTTGGTATTGCTACATGTTATCTGATTCTCAAGCTCTTTAAATTTGTAAAGAATACATTGTGCACTCTATACTACGAATTACATGATTAAAATTTGACGATTTCTTATAGTAGTTTAGACGTTGTCTGTGTTCGATTCAGCAATATCCATATTTTTTTGTTGTGTTGGCTCTGCCATGGTTTCATTTTGTATCAGTTGCAATGCTATGCATTTTTTTTAGTGTAATGTCTGATATTTTATTTTTCCAACTCTTCAGATTGCCATGAAGGAGCTACGAGAGCGGAAAATTCCTTTTACCATCCGTCGCTACTTGCCTGATGGAAGGTAAATACTACTGTTTGTTTATTAAGTTGGGTACTTCTTTTTCTTGGATGGGAGGGTTAAGGCTGATACAATTCCTCCATCTTTTATGTCGTACTTACCATTTTGGCAATTGTCCAGCTATGAAGATTGGGGAGTTGATGAGCTGATTGTGGAAGACTCCTGGAAGAGACAAGTGGGTGGTGATTGA
Protein sequence

>MS.gene072357.t1

MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDNKNDDLDAEGEPIETEEKEDAAPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD