AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017939


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017939.t1 MTR_7g092450 100.000 145 0 0 1 145 1 145 2.53e-100 284
MS.gene017939.t1 MTR_0019s0160 83.448 145 23 1 1 145 1 144 5.71e-73 215
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017939.t1 AT5G51940 79.452 146 27 2 1 145 1 144 1.97e-70 208
MS.gene017939.t1 AT2G04630 78.082 146 29 2 1 145 1 144 6.51e-69 204

Find 57 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATACTTGGAAGTCCTTC+TGG 0.228416 7.1:+14961926 None:intergenic
CCGCTCTCGTAGCTCCTTCA+TGG 0.261897 7.1:+14959144 None:intergenic
AAGTATGGTACCTCAATTTC+AGG 0.283991 7.1:+14962112 None:intergenic
AGGTCATCATTCTTGTTATC+AGG 0.290460 7.1:+14962011 None:intergenic
ACCACCCACTTGTCTCTTCC+AGG 0.359364 7.1:+14958922 None:intergenic
AAGTAGCGACGGATGGTAAA+AGG 0.371530 7.1:+14959115 None:intergenic
GTCCTTCTGGGACGTTCAAC+CGG 0.388301 7.1:+14961939 None:intergenic
GTACCCGCGCTCTTCAAATC+AGG 0.398664 7.1:-14961875 MS.gene017939:intron
AACTCTTCAGATTGCCATGA+AGG 0.418174 7.1:-14959158 MS.gene017939:intron
ATTGTCCAGCTATGAAGATT+GGG 0.418900 7.1:-14958972 MS.gene017939:intron
ACCAATTGAAACTGAGGAAA+AGG 0.424157 7.1:-14961973 MS.gene017939:CDS
TATGAGCGTGCTAGGATTCT+CGG 0.433316 7.1:-14961897 MS.gene017939:CDS
AATTGTCCAGCTATGAAGAT+TGG 0.435283 7.1:-14958973 MS.gene017939:intron
CTCATACTTAGTCATATACT+TGG 0.444475 7.1:+14961914 None:intergenic
ACCTGTCATGGTTGAGTTGG+AGG 0.445018 7.1:-14960403 MS.gene017939:CDS
AGCTGATTGTGGAAGACTCC+TGG 0.445700 7.1:-14958940 MS.gene017939:CDS
GGTACCTCAATTTCAGGCTC+TGG 0.453336 7.1:+14962118 None:intergenic
AGTAGTATTTACCTTCCATC+AGG 0.479574 7.1:+14959091 None:intergenic
GCCACCAGAGCCTGAAATTG+AGG 0.481155 7.1:-14962122 MS.gene017939:intron
ATATACTTGGAAGTCCTTCT+GGG 0.481308 7.1:+14961927 None:intergenic
CCCTCCAACTCAACCATGAC+AGG 0.481823 7.1:+14960402 None:intergenic
TTCGTAGTCATCGTCGGCCA+TGG 0.482815 7.1:+14962285 None:intergenic
TTGGTTCTCCTTCTGCATCT+AGG 0.484900 7.1:+14961991 None:intergenic
AATGGTTAAATTACCTCAAG+TGG 0.493654 7.1:+14960369 None:intergenic
CCTGTCATGGTTGAGTTGGA+GGG 0.500999 7.1:-14960402 MS.gene017939:CDS
GCAGGAAGGTGCAGAGGAGG+AGG 0.505888 7.1:-14962036 MS.gene017939:intron
ACCTCAATTTCAGGCTCTGG+TGG 0.507724 7.1:+14962121 None:intergenic
GGGAGTTGATGAGCTGATTG+TGG 0.508386 7.1:-14958951 MS.gene017939:CDS
GGAAAAGGAAGATGCTGCTC+CGG 0.509327 7.1:-14961958 MS.gene017939:CDS
TGACTAAGTATGAGCGTGCT+AGG 0.520533 7.1:-14961905 MS.gene017939:CDS
ATCCGTCGCTACTTGCCTGA+TGG 0.540830 7.1:-14959106 MS.gene017939:CDS
TGCACCTGTCATGGTTGAGT+TGG 0.547769 7.1:-14960406 MS.gene017939:CDS
TTCCATCAGGCAAGTAGCGA+CGG 0.559984 7.1:+14959104 None:intergenic
TGTGCAGGAAGGTGCAGAGG+AGG 0.563259 7.1:-14962039 MS.gene017939:intron
GTCGCTACTTGCCTGATGGA+AGG 0.581718 7.1:-14959102 MS.gene017939:intron
AAACCTGATTTGAAGAGCGC+GGG 0.585792 7.1:+14961872 None:intergenic
GACTCCTGGAAGAGACAAGT+GGG 0.586530 7.1:-14958926 MS.gene017939:CDS
AGGAGAACCAATTGAAACTG+AGG 0.593065 7.1:-14961979 MS.gene017939:CDS
CAGTATGAATGCACCTGTCA+TGG 0.596445 7.1:-14960415 MS.gene017939:CDS
CTCCGGTTGAACGTCCCAGA+AGG 0.600340 7.1:-14961941 MS.gene017939:CDS
ATCAGGCAAGTAGCGACGGA+TGG 0.606515 7.1:+14959108 None:intergenic
CTGTCATGGTTGAGTTGGAG+GGG 0.614709 7.1:-14960401 MS.gene017939:CDS
AATGATGACCTAGATGCAGA+AGG 0.620982 7.1:-14961999 MS.gene017939:CDS
TGTCATGGTTGAGTTGGAGG+GGG 0.622677 7.1:-14960400 MS.gene017939:CDS
TAAACCTGATTTGAAGAGCG+CGG 0.623407 7.1:+14961871 None:intergenic
GACTACGAAGATATCGACAT+GGG 0.632471 7.1:-14962271 MS.gene017939:CDS
ATGGTTAAATTACCTCAAGT+GGG 0.636541 7.1:+14960370 None:intergenic
AGACTCCTGGAAGAGACAAG+TGG 0.644950 7.1:-14958927 MS.gene017939:CDS
TTGTCCAGCTATGAAGATTG+GGG 0.646097 7.1:-14958971 MS.gene017939:intron
GATATCTTCGTAGTCATCGT+CGG 0.659789 7.1:+14962279 None:intergenic
TGACTACGAAGATATCGACA+TGG 0.677574 7.1:-14962272 MS.gene017939:CDS
GCATGTGCAGGAAGGTGCAG+AGG 0.686778 7.1:-14962042 MS.gene017939:intron
ATTAAAACGATGCAGGTACG+AGG 0.688503 7.1:-14962149 MS.gene017939:intron
CCATGAAGGAGCTACGAGAG+CGG 0.693186 7.1:-14959144 MS.gene017939:CDS
AAAACGATGCAGGTACGAGG+AGG 0.694919 7.1:-14962146 MS.gene017939:intron
TCCTGGAAGAGACAAGTGGG+TGG 0.726072 7.1:-14958923 MS.gene017939:CDS
ACTACGAAGATATCGACATG+GGG 0.760905 7.1:-14962270 MS.gene017939:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CACATAATTAATAATTAATT+AGG - chr7.1:14958978-14958997 MS.gene017939:intron 10.0%
!! AATACCAAAAAAAAAAAAAG+GGG + chr7.1:14961815-14961834 None:intergenic 15.0%
!! CAATACCAAAAAAAAAAAAA+GGG + chr7.1:14961816-14961835 None:intergenic 15.0%
!!! AATAGGCTTATTTTTATATT+AGG - chr7.1:14961234-14961253 MS.gene017939:intron 15.0%
!!! ATGATTGTTTAAGATTTTAA+AGG + chr7.1:14960716-14960735 None:intergenic 15.0%
!!! CTTCTTTTTTTCTTTAATTA+GGG - chr7.1:14959110-14959129 MS.gene017939:CDS 15.0%
!!! TCTTCTTTTTTTCTTTAATT+AGG - chr7.1:14959109-14959128 MS.gene017939:CDS 15.0%
!! AAAGAAAAAAAGAAGAAGTA+TGG + chr7.1:14959105-14959124 None:intergenic 20.0%
!! AAATTGAACTATGTTAACAT+GGG - chr7.1:14959658-14959677 MS.gene017939:intron 20.0%
!! AATAAGCAAAATCATACATA+GGG + chr7.1:14959370-14959389 None:intergenic 20.0%
!! ATACCAAAAAAAAAAAAAGG+GGG + chr7.1:14961814-14961833 None:intergenic 20.0%
!! ATTTATGTAACATGCAATAA+AGG + chr7.1:14960286-14960305 None:intergenic 20.0%
!! GCAATACCAAAAAAAAAAAA+AGG + chr7.1:14961817-14961836 None:intergenic 20.0%
!! TAAATTGAACTATGTTAACA+TGG - chr7.1:14959657-14959676 MS.gene017939:intron 20.0%
!! TACTGTTTGTTTATTAAGTT+GGG - chr7.1:14962127-14962146 MS.gene017939:CDS 20.0%
!! TGAAAATTATAGCATAAACT+GGG - chr7.1:14961380-14961399 MS.gene017939:intron 20.0%
!! TTAAATCCTAAATTAACATG+TGG + chr7.1:14961548-14961567 None:intergenic 20.0%
!! TTAACATATACTTGTGTAAT+AGG - chr7.1:14959688-14959707 MS.gene017939:intron 20.0%
!! TTAGGATTTAAATATTCTCA+TGG - chr7.1:14961557-14961576 MS.gene017939:intron 20.0%
!! TTGAAAATTATAGCATAAAC+TGG - chr7.1:14961379-14961398 MS.gene017939:intron 20.0%
!! TTTAAAAAAAGTTTCATCGA+TGG + chr7.1:14961446-14961465 None:intergenic 20.0%
!! TTTCTATATTTCAATTGAGT+GGG + chr7.1:14960965-14960984 None:intergenic 20.0%
!!! ATCCATATTTTTTTTTGTGT+TGG - chr7.1:14961970-14961989 MS.gene017939:CDS 20.0%
!!! TTTTCTATATTTCAATTGAG+TGG + chr7.1:14960966-14960985 None:intergenic 20.0%
! AAACAACTTATCAATAGAGT+AGG - chr7.1:14960369-14960388 MS.gene017939:intron 25.0%
! AAGTTGTCAAACAAAATTTG+AGG - chr7.1:14959987-14960006 MS.gene017939:intron 25.0%
! ACAAGAAAGACAAAAAGTTA+TGG + chr7.1:14960756-14960775 None:intergenic 25.0%
! ACATACATGTATAGTAACAA+GGG - chr7.1:14961144-14961163 MS.gene017939:intron 25.0%
! ACTCTATTGATAAGTTGTTT+GGG + chr7.1:14960369-14960388 None:intergenic 25.0%
! AGATCAATAAAGTAGAAGTA+AGG + chr7.1:14961007-14961026 None:intergenic 25.0%
! AGCCAACACAAAAAAAAATA+TGG + chr7.1:14961975-14961994 None:intergenic 25.0%
! CTAACAAAAAGTTCTTTCAA+CGG + chr7.1:14960693-14960712 None:intergenic 25.0%
! CTACTGTTTGTTTATTAAGT+TGG - chr7.1:14962126-14962145 MS.gene017939:CDS 25.0%
! GAATAAGCAAAATCATACAT+AGG + chr7.1:14959371-14959390 None:intergenic 25.0%
! TACTCTATTGATAAGTTGTT+TGG + chr7.1:14960370-14960389 None:intergenic 25.0%
! TGATAATTAAGTTCTTGTTG+AGG - chr7.1:14959880-14959899 MS.gene017939:intron 25.0%
! TTCTATATTTCAATTGAGTG+GGG + chr7.1:14960964-14960983 None:intergenic 25.0%
!! AACTTTTATGTTGGAGAATA+TGG + chr7.1:14959906-14959925 None:intergenic 25.0%
!! ACATAAATTGACAAGCTTTT+TGG - chr7.1:14960298-14960317 MS.gene017939:intron 25.0%
!! TGCTATAATTTTCAAAGTTC+AGG + chr7.1:14961374-14961393 None:intergenic 25.0%
!! TGTATGTTCTAAATAGAGTA+AGG + chr7.1:14959630-14959649 None:intergenic 25.0%
!! TTGCAACTTTTATTGAAGTA+TGG + chr7.1:14960421-14960440 None:intergenic 25.0%
!!! AAAAATAAGCCTATTTCTGA+TGG + chr7.1:14961229-14961248 None:intergenic 25.0%
!!! ATCAATGGGTTATGTAAAAT+GGG - chr7.1:14959486-14959505 MS.gene017939:intron 25.0%
!!! GTTTTATTTTTAGAGTCCTT+TGG - chr7.1:14961596-14961615 MS.gene017939:intron 25.0%
AATGGTTAAATTACCTCAAG+TGG + chr7.1:14960833-14960852 None:intergenic 30.0%
ACATGTATGTCAGCATATAT+TGG + chr7.1:14961134-14961153 None:intergenic 30.0%
ATACAAACAAGATCAACATC+TGG + chr7.1:14961074-14961093 None:intergenic 30.0%
ATCAATGGATGATGTAAAAC+AGG + chr7.1:14959539-14959558 None:intergenic 30.0%
ATCTGACCACATGTTAATTT+AGG - chr7.1:14961539-14961558 MS.gene017939:intron 30.0%
ATCTTAAACAATCATACTGC+AGG - chr7.1:14960721-14960740 MS.gene017939:intron 30.0%
ATGGTTAAATTACCTCAAGT+GGG + chr7.1:14960832-14960851 None:intergenic 30.0%
ATTAATTATGTGAGTGAGAG+AGG + chr7.1:14958970-14958989 None:intergenic 30.0%
ATTGCAATATGAACCTTACA+AGG + chr7.1:14960344-14960363 None:intergenic 30.0%
CTCATACTTAGTCATATACT+TGG + chr7.1:14959288-14959307 None:intergenic 30.0%
CTCTATTGATAAGTTGTTTG+GGG + chr7.1:14960368-14960387 None:intergenic 30.0%
CTGAACAAATGAACTATAAC+AGG + chr7.1:14961271-14961290 None:intergenic 30.0%
GACATACATGTATAGTAACA+AGG - chr7.1:14961143-14961162 MS.gene017939:intron 30.0%
GATCAAATTCCATCAGAAAT+AGG - chr7.1:14961217-14961236 MS.gene017939:intron 30.0%
TAAGAAATCTACATACGTGT+CGG - chr7.1:14959842-14959861 MS.gene017939:intron 30.0%
TGATCTCGTCTTCAAAATAT+AGG + chr7.1:14961202-14961221 None:intergenic 30.0%
TTAATTATGTGAGTGAGAGA+GGG + chr7.1:14958969-14958988 None:intergenic 30.0%
TTTACATCATCCATTGATCA+AGG - chr7.1:14959541-14959560 MS.gene017939:intron 30.0%
! AGCTTTTTGGACAACAAAAT+AGG - chr7.1:14960311-14960330 MS.gene017939:intron 30.0%
! CTTTCTCCCTTTAAAGAAAA+AGG - chr7.1:14961347-14961366 MS.gene017939:intron 30.0%
! TATGCTTTGATCATTGACTA+TGG - chr7.1:14961091-14961110 MS.gene017939:intron 30.0%
! TCAGGACCTTTTTCTTTAAA+GGG + chr7.1:14961356-14961375 None:intergenic 30.0%
! TTATGTCGTACTTACCATTT+TGG - chr7.1:14962202-14962221 MS.gene017939:intron 30.0%
! TTCAGGACCTTTTTCTTTAA+AGG + chr7.1:14961357-14961376 None:intergenic 30.0%
! TTTTATTGAAGTATGGTGCT+TGG + chr7.1:14960414-14960433 None:intergenic 30.0%
!! GATCAATGGGTTATGTAAAA+TGG - chr7.1:14959485-14959504 MS.gene017939:intron 30.0%
!!! TTGCCCCCTTTTTTTTTTTT+TGG - chr7.1:14961808-14961827 MS.gene017939:intron 30.0%
AAAGTACAAGCTATGGACAA+TGG + chr7.1:14961314-14961333 None:intergenic 35.0%
AAGTACGACATAAAAGATGG+AGG + chr7.1:14962195-14962214 None:intergenic 35.0%
AAGTATGGTACCTCAATTTC+AGG + chr7.1:14959090-14959109 None:intergenic 35.0%
AATTGTCCAGCTATGAAGAT+TGG - chr7.1:14962226-14962245 MS.gene017939:intron 35.0%
ACCAATTGAAACTGAGGAAA+AGG - chr7.1:14959226-14959245 MS.gene017939:intron 35.0%
ACTCATGATTAAAACGATGC+AGG - chr7.1:14959043-14959062 MS.gene017939:intron 35.0%
AGCTATGGAATCTTGATCAA+TGG - chr7.1:14959471-14959490 MS.gene017939:intron 35.0%
AGCTGTAAAAACGAATACTC+AGG + chr7.1:14960253-14960272 None:intergenic 35.0%
AGGGGAGAATTTAAACCAAA+CGG + chr7.1:14960605-14960624 None:intergenic 35.0%
AGTAGTATTTACCTTCCATC+AGG + chr7.1:14962111-14962130 None:intergenic 35.0%
ATAGAGTAAGGATGAGAAAG+AGG + chr7.1:14959618-14959637 None:intergenic 35.0%
ATATACTTGGAAGTCCTTCT+GGG + chr7.1:14959275-14959294 None:intergenic 35.0%
ATGTGCAATTGTGCATTACA+TGG + chr7.1:14961048-14961067 None:intergenic 35.0%
ATTGTCCAGCTATGAAGATT+GGG - chr7.1:14962227-14962246 MS.gene017939:intron 35.0%
CAAAAATCCAGAATAGATGC+TGG - chr7.1:14960162-14960181 MS.gene017939:intron 35.0%
CAGTACTGTAACAAGAAAGA+AGG + chr7.1:14960877-14960896 None:intergenic 35.0%
CATGGTACACTACTTAATGA+AGG + chr7.1:14961030-14961049 None:intergenic 35.0%
CATTGATCAAGGTAACCAAA+AGG - chr7.1:14959552-14959571 MS.gene017939:intron 35.0%
CATTTGTTCAGCTTGTAGAT+TGG - chr7.1:14961280-14961299 MS.gene017939:intron 35.0%
GCATAGTAGTGTATTGTACT+GGG + chr7.1:14960529-14960548 None:intergenic 35.0%
GCTATGGAATCTTGATCAAT+GGG - chr7.1:14959472-14959491 MS.gene017939:intron 35.0%
GGTAAGTACGACATAAAAGA+TGG + chr7.1:14962198-14962217 None:intergenic 35.0%
TCAACATGTAGCAATACCAA+AGG + chr7.1:14961615-14961634 None:intergenic 35.0%
TCAAGATTCCATAGCTAACA+TGG + chr7.1:14959467-14959486 None:intergenic 35.0%
TGAATCGCAAAGAGATCAAA+TGG + chr7.1:14960851-14960870 None:intergenic 35.0%
TGATGTAAAACAGGACAAAC+TGG + chr7.1:14959530-14959549 None:intergenic 35.0%
TGCATAGTAGTGTATTGTAC+TGG + chr7.1:14960530-14960549 None:intergenic 35.0%
TTGGTATTGCTACATGTTGA+GGG - chr7.1:14961615-14961634 MS.gene017939:intron 35.0%
TTGTGTGTAAAAACAGGGTA+AGG - chr7.1:14961713-14961732 MS.gene017939:intron 35.0%
TTTCAAGAAGCTTGACAGTT+AGG + chr7.1:14960463-14960482 None:intergenic 35.0%
TTTGGTATTGCTACATGTTG+AGG - chr7.1:14961614-14961633 MS.gene017939:intron 35.0%
! AGGTCATCATTCTTGTTATC+AGG + chr7.1:14959191-14959210 None:intergenic 35.0%
! AGTTGGGTACTTCTTTTTCT+TGG - chr7.1:14962143-14962162 MS.gene017939:intron 35.0%
! CTTTTGTCAAAAAGTTGCCT+TGG + chr7.1:14960657-14960676 None:intergenic 35.0%
! GGAGTTGACAACTTTTATGT+TGG + chr7.1:14959915-14959934 None:intergenic 35.0%
! GGTACTTCTTTTTCTTGGAT+GGG - chr7.1:14962148-14962167 MS.gene017939:intron 35.0%
! TCCTTTTCCTCAGTTTCAAT+TGG + chr7.1:14959230-14959249 None:intergenic 35.0%
!! AAAATTTGAGGAGTGCTGAA+AGG - chr7.1:14959999-14960018 MS.gene017939:intron 35.0%
!! CTTTTGGTTACCTTGATCAA+TGG + chr7.1:14959554-14959573 None:intergenic 35.0%
AAAAAAAAAGGGGGCAAACC+CGG + chr7.1:14961805-14961824 None:intergenic 40.0%
AACTCTTCAGATTGCCATGA+AGG - chr7.1:14962041-14962060 MS.gene017939:intron 40.0%
AATGATGACCTAGATGCAGA+AGG - chr7.1:14959200-14959219 MS.gene017939:intron 40.0%
ACAATGACTAAATGCCCGTT+TGG - chr7.1:14960587-14960606 MS.gene017939:intron 40.0%
ACACAGAAGCTGAAATCCTA+TGG + chr7.1:14960054-14960073 None:intergenic 40.0%
ACTACGAAGATATCGACATG+GGG - chr7.1:14958929-14958948 MS.gene017939:CDS 40.0%
ACTCCAGTGGTTTCTAATCT+AGG + chr7.1:14960087-14960106 None:intergenic 40.0%
AGACATCCAACGAAAATTCG+TGG + chr7.1:14959744-14959763 None:intergenic 40.0%
AGCCTCTTGTGTGTAAAAAC+AGG - chr7.1:14961707-14961726 MS.gene017939:intron 40.0%
AGGAGAACCAATTGAAACTG+AGG - chr7.1:14959220-14959239 MS.gene017939:intron 40.0%
ATGGTTCAACTGAAATCCAC+GGG + chr7.1:14959448-14959467 None:intergenic 40.0%
ATTAAAACGATGCAGGTACG+AGG - chr7.1:14959050-14959069 MS.gene017939:intron 40.0%
CAGTTGAACCATGTTAGCTA+TGG - chr7.1:14959456-14959475 MS.gene017939:intron 40.0%
CATATACTTGGAAGTCCTTC+TGG + chr7.1:14959276-14959295 None:intergenic 40.0%
CATGGTTCAACTGAAATCCA+CGG + chr7.1:14959449-14959468 None:intergenic 40.0%
CGAATACTCAGGTATCTTAG+AGG + chr7.1:14960242-14960261 None:intergenic 40.0%
CGTACAATACACCAAATGGT+GGG - chr7.1:14961739-14961758 MS.gene017939:intron 40.0%
GACTACGAAGATATCGACAT+GGG - chr7.1:14958928-14958947 MS.gene017939:CDS 40.0%
GAGGATTGCATTATGAGACA+AGG - chr7.1:14959955-14959974 MS.gene017939:intron 40.0%
GATATCTTCGTAGTCATCGT+CGG + chr7.1:14958923-14958942 None:intergenic 40.0%
GCCTCTTGTGTGTAAAAACA+GGG - chr7.1:14961708-14961727 MS.gene017939:intron 40.0%
GCTTGACAGTTAGGTTAAGT+TGG + chr7.1:14960454-14960473 None:intergenic 40.0%
GGGGAGAATTTAAACCAAAC+GGG + chr7.1:14960604-14960623 None:intergenic 40.0%
GTAAAACAGGACAAACTGGA+AGG + chr7.1:14959526-14959545 None:intergenic 40.0%
TACAAGCTATGGACAATGGT+TGG + chr7.1:14961310-14961329 None:intergenic 40.0%
TAGCTGGACAATTGCCAAAA+TGG + chr7.1:14962219-14962238 None:intergenic 40.0%
TGAACATAGATCACAGCCAT+AGG - chr7.1:14960035-14960054 MS.gene017939:intron 40.0%
TGACTACGAAGATATCGACA+TGG - chr7.1:14958927-14958946 MS.gene017939:CDS 40.0%
TGGACAACAAAATAGGTTGC+AGG - chr7.1:14960318-14960337 MS.gene017939:intron 40.0%
TGGTATTGCTACATGTTGAG+GGG - chr7.1:14961616-14961635 MS.gene017939:intron 40.0%
TTCATGGCAATCTGAAGAGT+TGG + chr7.1:14962042-14962061 None:intergenic 40.0%
TTGTCCAGCTATGAAGATTG+GGG - chr7.1:14962228-14962247 MS.gene017939:intron 40.0%
! AACCACTGGAGTTTTCTTCA+TGG - chr7.1:14960095-14960114 MS.gene017939:intron 40.0%
! ACTTCTTTTTCTTGGATGGG+AGG - chr7.1:14962151-14962170 MS.gene017939:intron 40.0%
! AGCCAAGAAAGTACAAGCTA+TGG + chr7.1:14961321-14961340 None:intergenic 40.0%
! CTTCTTTTTCTTGGATGGGA+GGG - chr7.1:14962152-14962171 MS.gene017939:intron 40.0%
! GGATTTTTGTGATGCAGACT+AGG + chr7.1:14960151-14960170 None:intergenic 40.0%
! GGGTACTTCTTTTTCTTGGA+TGG - chr7.1:14962147-14962166 MS.gene017939:intron 40.0%
! GTCCATAGCTTGTACTTTCT+TGG - chr7.1:14961316-14961335 MS.gene017939:intron 40.0%
! TAAACCTGATTTGAAGAGCG+CGG + chr7.1:14959331-14959350 None:intergenic 40.0%
! TAGCTTGTACTTTCTTGGCT+CGG - chr7.1:14961321-14961340 MS.gene017939:intron 40.0%
! TTGATGATTGATGCATGTGC+AGG - chr7.1:14959145-14959164 MS.gene017939:CDS 40.0%
! TTTCCTCCACGAATTTTCGT+TGG - chr7.1:14959735-14959754 MS.gene017939:intron 40.0%
!!! ACCCTGTTTTTACACACAAG+AGG + chr7.1:14961712-14961731 None:intergenic 40.0%
!!! TTTTTGTGTTGGCTCTGCTA+TGG - chr7.1:14961981-14962000 MS.gene017939:CDS 40.0%
AACTCCCCAATCTTCATAGC+TGG + chr7.1:14962235-14962254 None:intergenic 45.0%
AAGTAGCGACGGATGGTAAA+AGG + chr7.1:14962087-14962106 None:intergenic 45.0%
ACCATCCTGAGTTTGTCTCT+AGG - chr7.1:14959780-14959799 MS.gene017939:intron 45.0%
ACCTAGAGACAAACTCAGGA+TGG + chr7.1:14959784-14959803 None:intergenic 45.0%
ACTGCATCTTCTCGACAAAG+TGG - chr7.1:14959416-14959435 MS.gene017939:intron 45.0%
AGCTTGTACTTTCTTGGCTC+GGG - chr7.1:14961322-14961341 MS.gene017939:intron 45.0%
AGTAAGGATGAGAAAGAGGC+TGG + chr7.1:14959614-14959633 None:intergenic 45.0%
AGTTGTCAACTCCACTTGCA+TGG - chr7.1:14959922-14959941 MS.gene017939:intron 45.0%
CACAACCTAGAGACAAACTC+AGG + chr7.1:14959788-14959807 None:intergenic 45.0%
CAGTATGAATGCACCTGTCA+TGG - chr7.1:14960784-14960803 MS.gene017939:intron 45.0%
CATCCAACGAAAATTCGTGG+AGG + chr7.1:14959741-14959760 None:intergenic 45.0%
CATGGTTCACTCCTACAGAA+CGG + chr7.1:14960202-14960221 None:intergenic 45.0%
CCACAAAAGAACCATGCAAG+TGG + chr7.1:14959936-14959955 None:intergenic 45.0%
CTGCCTAGATTAGAAACCAC+TGG - chr7.1:14960081-14960100 MS.gene017939:intron 45.0%
GACAGAACCAGCATCTATTC+TGG + chr7.1:14960172-14960191 None:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG - chr7.1:14961738-14961757 MS.gene017939:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - chr7.1:14961735-14961754 MS.gene017939:intron 45.0%
GTCCATGAAGAAAACTCCAG+TGG + chr7.1:14960100-14960119 None:intergenic 45.0%
GTTGTTGTCATGTGACCGTA+AGG - chr7.1:14961661-14961680 MS.gene017939:intron 45.0%
TACATGTTGAGGGGTAACCT+TGG - chr7.1:14961625-14961644 MS.gene017939:intron 45.0%
TATGAGCGTGCTAGGATTCT+CGG - chr7.1:14959302-14959321 MS.gene017939:intron 45.0%
TCTCTAGGTTGTGAAACGCA+GGG - chr7.1:14959795-14959814 MS.gene017939:intron 45.0%
TGACTAAGTATGAGCGTGCT+AGG - chr7.1:14959294-14959313 MS.gene017939:intron 45.0%
TGATTGATGCATGTGCAGGA+AGG - chr7.1:14959149-14959168 MS.gene017939:CDS 45.0%
TTTCTTGGATGGGAGGGTTA+AGG - chr7.1:14962158-14962177 MS.gene017939:intron 45.0%
! AAACCTGATTTGAAGAGCGC+GGG + chr7.1:14959330-14959349 None:intergenic 45.0%
! AATAGGTTGCAGGCCTTGTA+AGG - chr7.1:14960328-14960347 MS.gene017939:intron 45.0%
! CATTGCTCTTGCTTGCCTTT+TGG + chr7.1:14959570-14959589 None:intergenic 45.0%
! CCACTTGCATGGTTCTTTTG+TGG - chr7.1:14959933-14959952 MS.gene017939:intron 45.0%
! CTTGCATGGTTCTTTTGTGG+AGG - chr7.1:14959936-14959955 MS.gene017939:intron 45.0%
! TGTCAGGTTTTCCGTTCTGT+AGG - chr7.1:14960188-14960207 MS.gene017939:intron 45.0%
! TTGGTTCTCCTTCTGCATCT+AGG + chr7.1:14959211-14959230 None:intergenic 45.0%
!! CTTAGAGGCACTATCACTCA+AGG + chr7.1:14960227-14960246 None:intergenic 45.0%
!! GAATAGATGCTGGTTCTGTC+AGG - chr7.1:14960172-14960191 MS.gene017939:intron 45.0%
!! TCTACATACGTGTCGGTTGT+TGG - chr7.1:14959849-14959868 MS.gene017939:intron 45.0%
!! ACATAATTAATAATTAATTA+GGG - chr7.1:14958979-14958998 MS.gene017939:intron 5.0%
AAAACGATGCAGGTACGAGG+AGG - chr7.1:14959053-14959072 MS.gene017939:intron 50.0%
AGACTCCTGGAAGAGACAAG+TGG - chr7.1:14962272-14962291 MS.gene017939:CDS 50.0%
AGCTGATTGTGGAAGACTCC+TGG - chr7.1:14962259-14962278 MS.gene017939:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr7.1:14961645-14961664 None:intergenic 50.0%
CGTTCTGTAGGAGTGAACCA+TGG - chr7.1:14960200-14960219 MS.gene017939:intron 50.0%
CTCTAGGTTGTGAAACGCAG+GGG - chr7.1:14959796-14959815 MS.gene017939:intron 50.0%
GACTCCTGGAAGAGACAAGT+GGG - chr7.1:14962273-14962292 MS.gene017939:CDS 50.0%
GACTTGAACCCGTGACCTTA+CGG + chr7.1:14961679-14961698 None:intergenic 50.0%
GCACTATCACTCAAGGACCA+TGG + chr7.1:14960220-14960239 None:intergenic 50.0%
GGAAAAGGAAGATGCTGCTC+CGG - chr7.1:14959241-14959260 MS.gene017939:intron 50.0%
GGTACCTCAATTTCAGGCTC+TGG + chr7.1:14959084-14959103 None:intergenic 50.0%
GTCATGTGACCGTAAGGTCA+CGG - chr7.1:14961667-14961686 MS.gene017939:intron 50.0%
GTCTCTAGGTTGTGAAACGC+AGG - chr7.1:14959794-14959813 MS.gene017939:intron 50.0%
GTTCAACTGAAATCCACGGG+AGG + chr7.1:14959445-14959464 None:intergenic 50.0%
TCATGTGACCGTAAGGTCAC+GGG - chr7.1:14961668-14961687 MS.gene017939:intron 50.0%
TGCACCTGTCATGGTTGAGT+TGG - chr7.1:14960793-14960812 MS.gene017939:intron 50.0%
TGGGGGGAAAACACTTACCA+AGG - chr7.1:14960637-14960656 MS.gene017939:intron 50.0%
TGTGTATCCCTAACCACCGA+TGG - chr7.1:14959588-14959607 MS.gene017939:intron 50.0%
TTCCATCAGGCAAGTAGCGA+CGG + chr7.1:14962098-14962117 None:intergenic 50.0%
! ACACACAAGAGGCTGTTTCC+AGG + chr7.1:14961701-14961720 None:intergenic 50.0%
! ACCTCAATTTCAGGCTCTGG+TGG + chr7.1:14959081-14959100 None:intergenic 50.0%
! ATGAGAAAGAGGCTGGCCAT+CGG + chr7.1:14959607-14959626 None:intergenic 50.0%
! CTCCCCTCACTGACTACTAT+GGG - chr7.1:14960618-14960637 MS.gene017939:intron 50.0%
! TCCCCTCACTGACTACTATG+GGG - chr7.1:14960619-14960638 MS.gene017939:intron 50.0%
! TCTCCCCTCACTGACTACTA+TGG - chr7.1:14960617-14960636 MS.gene017939:intron 50.0%
!! ACCTGTCATGGTTGAGTTGG+AGG - chr7.1:14960796-14960815 MS.gene017939:intron 50.0%
!! CCTGTCATGGTTGAGTTGGA+GGG - chr7.1:14960797-14960816 MS.gene017939:intron 50.0%
!! CTGTCATGGTTGAGTTGGAG+GGG - chr7.1:14960798-14960817 MS.gene017939:intron 50.0%
!! GCTTGGTGCAATCTCTAAGC+AGG + chr7.1:14960397-14960416 None:intergenic 50.0%
!! GGGAGTTGATGAGCTGATTG+TGG - chr7.1:14962248-14962267 MS.gene017939:intron 50.0%
!! TGTCATGGTTGAGTTGGAGG+GGG - chr7.1:14960799-14960818 MS.gene017939:intron 50.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr7.1:14961680-14961699 MS.gene017939:intron 55.0%
ACCACCCACTTGTCTCTTCC+AGG + chr7.1:14962280-14962299 None:intergenic 55.0%
ACTGAAGCTCCCGCATATGC+AGG + chr7.1:14961779-14961798 None:intergenic 55.0%
ATCAGGCAAGTAGCGACGGA+TGG + chr7.1:14962094-14962113 None:intergenic 55.0%
ATCCGTCGCTACTTGCCTGA+TGG - chr7.1:14962093-14962112 MS.gene017939:intron 55.0%
CCATGAAGGAGCTACGAGAG+CGG - chr7.1:14962055-14962074 MS.gene017939:intron 55.0%
CCCCCATAGTAGTCAGTGAG+GGG + chr7.1:14960623-14960642 None:intergenic 55.0%
CCCCCCATAGTAGTCAGTGA+GGG + chr7.1:14960624-14960643 None:intergenic 55.0%
CCCTCCAACTCAACCATGAC+AGG + chr7.1:14960800-14960819 None:intergenic 55.0%
CTGAAGCTCCCGCATATGCA+GGG + chr7.1:14961778-14961797 None:intergenic 55.0%
GACAAAGTGGTATCCTCCCG+TGG - chr7.1:14959429-14959448 MS.gene017939:intron 55.0%
GCCACCAGAGCCTGAAATTG+AGG - chr7.1:14959077-14959096 MS.gene017939:intron 55.0%
GTACCCGCGCTCTTCAAATC+AGG - chr7.1:14959324-14959343 MS.gene017939:intron 55.0%
GTCGCTACTTGCCTGATGGA+AGG - chr7.1:14962097-14962116 MS.gene017939:intron 55.0%
TCCCCCCATAGTAGTCAGTG+AGG + chr7.1:14960625-14960644 None:intergenic 55.0%
TCCTGGAAGAGACAAGTGGG+TGG - chr7.1:14962276-14962295 MS.gene017939:CDS 55.0%
! CCCCTCACTGACTACTATGG+GGG - chr7.1:14960620-14960639 MS.gene017939:intron 55.0%
! CCCTCACTGACTACTATGGG+GGG - chr7.1:14960621-14960640 MS.gene017939:intron 55.0%
!! GTCCTTCTGGGACGTTCAAC+CGG + chr7.1:14959263-14959282 None:intergenic 55.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr7.1:14961634-14961653 MS.gene017939:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr7.1:14961783-14961802 MS.gene017939:intron 60.0%
CATATGCAGGGTCCGGGAAG+GGG + chr7.1:14961766-14961785 None:intergenic 60.0%
CCGCTCTCGTAGCTCCTTCA+TGG + chr7.1:14962058-14962077 None:intergenic 60.0%
CTCCGGTTGAACGTCCCAGA+AGG - chr7.1:14959258-14959277 MS.gene017939:intron 60.0%
CTTCCCGGACCCTGCATATG+CGG - chr7.1:14961766-14961785 MS.gene017939:intron 60.0%
GCATATGCAGGGTCCGGGAA+GGG + chr7.1:14961767-14961786 None:intergenic 60.0%
GGGGGAAACTGACCCACTTG+AGG - chr7.1:14960817-14960836 MS.gene017939:intron 60.0%
TTCCCGGACCCTGCATATGC+GGG - chr7.1:14961767-14961786 MS.gene017939:intron 60.0%
! AGAAAGAGGCTGGCCATCGG+TGG + chr7.1:14959604-14959623 None:intergenic 60.0%
! AGGCTGGCCATCGGTGGTTA+GGG + chr7.1:14959598-14959617 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr7.1:14961751-14961770 MS.gene017939:intron 60.0%
! GCATGTGCAGGAAGGTGCAG+AGG - chr7.1:14959157-14959176 MS.gene017939:intron 60.0%
! TGTGCAGGAAGGTGCAGAGG+AGG - chr7.1:14959160-14959179 MS.gene017939:intron 60.0%
CGCATATGCAGGGTCCGGGA+AGG + chr7.1:14961768-14961787 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr7.1:14961753-14961772 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG + chr7.1:14961772-14961791 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG + chr7.1:14961773-14961792 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr7.1:14961784-14961803 MS.gene017939:intron 65.0%
! GAGGCTGGCCATCGGTGGTT+AGG + chr7.1:14959599-14959618 None:intergenic 65.0%
! GCAGGAAGGTGCAGAGGAGG+AGG - chr7.1:14959163-14959182 MS.gene017939:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 14958916 14962305 14958916 ID=MS.gene017939
chr7.1 mRNA 14958916 14962305 14958916 ID=MS.gene017939.t1;Parent=MS.gene017939
chr7.1 exon 14962271 14962305 14962271 ID=MS.gene017939.t1.exon1;Parent=MS.gene017939.t1
chr7.1 CDS 14962271 14962305 14962271 ID=cds.MS.gene017939.t1;Parent=MS.gene017939.t1
chr7.1 exon 14962123 14962156 14962123 ID=MS.gene017939.t1.exon2;Parent=MS.gene017939.t1
chr7.1 CDS 14962123 14962156 14962123 ID=cds.MS.gene017939.t1;Parent=MS.gene017939.t1
chr7.1 exon 14961876 14962054 14961876 ID=MS.gene017939.t1.exon3;Parent=MS.gene017939.t1
chr7.1 CDS 14961876 14962054 14961876 ID=cds.MS.gene017939.t1;Parent=MS.gene017939.t1
chr7.1 exon 14960383 14960434 14960383 ID=MS.gene017939.t1.exon4;Parent=MS.gene017939.t1
chr7.1 CDS 14960383 14960434 14960383 ID=cds.MS.gene017939.t1;Parent=MS.gene017939.t1
chr7.1 exon 14959103 14959170 14959103 ID=MS.gene017939.t1.exon5;Parent=MS.gene017939.t1
chr7.1 CDS 14959103 14959170 14959103 ID=cds.MS.gene017939.t1;Parent=MS.gene017939.t1
chr7.1 exon 14958916 14958985 14958916 ID=MS.gene017939.t1.exon6;Parent=MS.gene017939.t1
chr7.1 CDS 14958916 14958985 14958916 ID=cds.MS.gene017939.t1;Parent=MS.gene017939.t1
Gene Sequence

>MS.gene017939

ATGGCCGACGATGACTACGAAGATATCGACATGGGGTTCTCTTTCTCTTTCCCTCTCTCACTCACATAATTAATAATTAATTAGGACTCACATAATTAATAATTAATTAGGGTTTGTATTATTTTTTACTCATGATTAAAACGATGCAGGTACGAGGAGGAGCCACCAGAGCCTGAAATTGAGGTACCATACTTCTTCTTTTTTTCTTTAATTAGGGTTTATGAAATTGTTGATGATTGATGCATGTGCAGGAAGGTGCAGAGGAGGAGGATCCTGATAACAAGAATGATGACCTAGATGCAGAAGGAGAACCAATTGAAACTGAGGAAAAGGAAGATGCTGCTCCGGTTGAACGTCCCAGAAGGACTTCCAAGTATATGACTAAGTATGAGCGTGCTAGGATTCTCGGTACCCGCGCTCTTCAAATCAGGTTTACAGCTTAATTTCATCACCCTATGTATGATTTTGCTTATTCATTAGTATTTGTGTTGATATGTTTGACTGCATCTTCTCGACAAAGTGGTATCCTCCCGTGGATTTCAGTTGAACCATGTTAGCTATGGAATCTTGATCAATGGGTTATGTAAAATGGGACAAGCACGATCTTCCTTCCAGTTTGTCCTGTTTTACATCATCCATTGATCAAGGTAACCAAAAGGCAAGCAAGAGCAATGTGTATCCCTAACCACCGATGGCCAGCCTCTTTCTCATCCTTACTCTATTTAGAACATACAATTAAATTAAATTGAACTATGTTAACATGGGTCTGCGCTTAACATATACTTGTGTAATAGGAACTCTACTAACAGTATTCTTGTATTTCCTCCACGAATTTTCGTTGGATGTCTAAGAACAAATTTGTCAACCATCCTGAGTTTGTCTCTAGGTTGTGAAACGCAGGGGAGAGAGAGAGAGAGACAATTTGTTAAGAAATCTACATACGTGTCGGTTGTTGGAATATGACTGATAATTAAGTTCTTGTTGAGGCCATATTCTCCAACATAAAAGTTGTCAACTCCACTTGCATGGTTCTTTTGTGGAGGATTGCATTATGAGACAAGGATACTGCTCAAGTTGTCAAACAAAATTTGAGGAGTGCTGAAAGGAATCTGAAGTTCGTGAACATAGATCACAGCCATAGGATTTCAGCTTCTGTGTTCTGCTTCTGCCTAGATTAGAAACCACTGGAGTTTTCTTCATGGACATAGACTTACTGACATCTGAGTCAGATGCCTAGTCTGCATCACAAAAATCCAGAATAGATGCTGGTTCTGTCAGGTTTTCCGTTCTGTAGGAGTGAACCATGGTCCTTGAGTGATAGTGCCTCTAAGATACCTGAGTATTCGTTTTTACAGCTTTCTAATGCTCCTTTATTGCATGTTACATAAATTGACAAGCTTTTTGGACAACAAAATAGGTTGCAGGCCTTGTAAGGTTCATATTGCAATGCCCCAAACAACTTATCAATAGAGTAGGATCCTGCTTAGAGATTGCACCAAGCACCATACTTCAATAAAAGTTGCAATAACTAACTGCCAACTTAACCTAACTGTCAAGCTTCTTGAAAGAGAACTAATTCTCTGCACAGTGAGCTTACAAAGAATGCAAAACCCAGTACAATACACTACTATGCAATATGCATATTAAAAACAACAATGACTAAATGAAACAACAATGACTAAATGCCCGTTTGGTTTAAATTCTCCCCTCACTGACTACTATGGGGGGAAAACACTTACCAAGGCAACTTTTTGACAAAAGTTACTTTTTTCTTCCGTTGAAAGAACTTTTTGTTAGCCTTTAAAATCTTAAACAATCATACTGCAGGTCTAATATGCCATAACTTTTTGTCTTTCTTGTTGTATGTGCAGTATGAATGCACCTGTCATGGTTGAGTTGGAGGGGGAAACTGACCCACTTGAGGTAATTTAACCATTTGATCTCTTTGCGATTCAATACCTTCTTTCTTGTTACAGTACTGCATTTGACTACTAATTGTGAGAATATCGTTGTCAAATTTTCAAACATATGTCAGTTGCGCTATGCCCCACTCAATTGAAATATAGAAAATGATTCATTACGAAGCTTCCTTACTTCTACTTTATTGATCTCCTTCATTAAGTAGTGTACCATGTAATGCACAATTGCACATACTCCAGATGTTGATCTTGTTTGTATGCTTTGATCATTGACTATGGTCAACTATACAGTTGTACCAATATATGCTGACATACATGTATAGTAACAAGGGTTTCATCTTCTCATATATTCATTTTCAATTAACCTATATTTTGAAGACGAGATCAAATTCCATCAGAAATAGGCTTATTTTTATATTAGGTTTAATAAATTCCTGTTATAGTTCATTTGTTCAGCTTGTAGATTGGTTTTCCAACCATTGTCCATAGCTTGTACTTTCTTGGCTCGGGATCTTTCTCCCTTTAAAGAAAAAGGTCCTGAACTTTGAAAATTATAGCATAAACTGGGTTGTTCTTCAGTTTGACAGTCGCATGATTTTTTCAATGTTCCATCGATGAAACTTTTTTTAAAAAATTATATAAGACTGTCATCATGACTTCGCTGAACTGATATCTTTGATGAAATTCTTGTCTTCTAATGTTGAATCTGACCACATGTTAATTTAGGATTTAAATATTCTCATGGTTGAGTAGTGTATCTTGTTTTATTTTTAGAGTCCTTTGGTATTGCTACATGTTGAGGGGTAACCTTGGCGCAACTGGTAAAGTTGTTGTCATGTGACCGTAAGGTCACGGGTTCAAGTCCTGGAAACAGCCTCTTGTGTGTAAAAACAGGGTAAGGCTGCGTACAATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCATATGCGGGAGCTTCAGTGCACCGGGTTTGCCCCCTTTTTTTTTTTTTGGTATTGCTACATGTTATCTGATTCTCAAGCTCTTTAGATTTGTAAAGAATACATTGTGCACTCTATACTACGAATTACATGATTAAAATTTGACGATTTCTTATAGTAGTTTAGACGTTGTCTGTGTTCGATTCAGCAATATCCATATTTTTTTTTGTGTTGGCTCTGCTATGGTTTCTTTTTAGTGTAATGTCTGATATTTTATTTTTCCAACTCTTCAGATTGCCATGAAGGAGCTACGAGAGCGGAAAATTCCTTTTACCATCCGTCGCTACTTGCCTGATGGAAGGTAAATACTACTGTTTGTTTATTAAGTTGGGTACTTCTTTTTCTTGGATGGGAGGGTTAAGGCTGATACAATTCCTCCATCTTTTATGTCGTACTTACCATTTTGGCAATTGTCCAGCTATGAAGATTGGGGAGTTGATGAGCTGATTGTGGAAGACTCCTGGAAGAGACAAGTGGGTGGTGATTGA

Protein sequence

>MS.gene017939.t1

MADDDYEDIDMGYEEEPPEPEIEEGAEEEDPDNKNDDLDAEGEPIETEEKEDAAPVERPRRTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGD