Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017939.t1 | XP_003625191.1 | 100 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 4.00E-55 | 224.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017939.t1 | Q9FJ98 | 67.8 | 146 | 44 | 2 | 1 | 145 | 1 | 144 | 1.2e-47 | 190.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017939.t1 | A2Q3E0 | 100.0 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 2.9e-55 | 224.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017939.t1 | MTR_7g092450 | 100.000 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 2.53e-100 | 284 |
MS.gene017939.t1 | MTR_0019s0160 | 83.448 | 145 | 23 | 1 | 1 | 145 | 1 | 144 | 5.71e-73 | 215 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017939.t1 | AT5G51940 | 79.452 | 146 | 27 | 2 | 1 | 145 | 1 | 144 | 1.97e-70 | 208 |
MS.gene017939.t1 | AT2G04630 | 78.082 | 146 | 29 | 2 | 1 | 145 | 1 | 144 | 6.51e-69 | 204 |
Find 57 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATATACTTGGAAGTCCTTC+TGG | 0.228416 | 7.1:+14961926 | None:intergenic |
CCGCTCTCGTAGCTCCTTCA+TGG | 0.261897 | 7.1:+14959144 | None:intergenic |
AAGTATGGTACCTCAATTTC+AGG | 0.283991 | 7.1:+14962112 | None:intergenic |
AGGTCATCATTCTTGTTATC+AGG | 0.290460 | 7.1:+14962011 | None:intergenic |
ACCACCCACTTGTCTCTTCC+AGG | 0.359364 | 7.1:+14958922 | None:intergenic |
AAGTAGCGACGGATGGTAAA+AGG | 0.371530 | 7.1:+14959115 | None:intergenic |
GTCCTTCTGGGACGTTCAAC+CGG | 0.388301 | 7.1:+14961939 | None:intergenic |
GTACCCGCGCTCTTCAAATC+AGG | 0.398664 | 7.1:-14961875 | MS.gene017939:intron |
AACTCTTCAGATTGCCATGA+AGG | 0.418174 | 7.1:-14959158 | MS.gene017939:intron |
ATTGTCCAGCTATGAAGATT+GGG | 0.418900 | 7.1:-14958972 | MS.gene017939:intron |
ACCAATTGAAACTGAGGAAA+AGG | 0.424157 | 7.1:-14961973 | MS.gene017939:CDS |
TATGAGCGTGCTAGGATTCT+CGG | 0.433316 | 7.1:-14961897 | MS.gene017939:CDS |
AATTGTCCAGCTATGAAGAT+TGG | 0.435283 | 7.1:-14958973 | MS.gene017939:intron |
CTCATACTTAGTCATATACT+TGG | 0.444475 | 7.1:+14961914 | None:intergenic |
ACCTGTCATGGTTGAGTTGG+AGG | 0.445018 | 7.1:-14960403 | MS.gene017939:CDS |
AGCTGATTGTGGAAGACTCC+TGG | 0.445700 | 7.1:-14958940 | MS.gene017939:CDS |
GGTACCTCAATTTCAGGCTC+TGG | 0.453336 | 7.1:+14962118 | None:intergenic |
AGTAGTATTTACCTTCCATC+AGG | 0.479574 | 7.1:+14959091 | None:intergenic |
GCCACCAGAGCCTGAAATTG+AGG | 0.481155 | 7.1:-14962122 | MS.gene017939:intron |
ATATACTTGGAAGTCCTTCT+GGG | 0.481308 | 7.1:+14961927 | None:intergenic |
CCCTCCAACTCAACCATGAC+AGG | 0.481823 | 7.1:+14960402 | None:intergenic |
TTCGTAGTCATCGTCGGCCA+TGG | 0.482815 | 7.1:+14962285 | None:intergenic |
TTGGTTCTCCTTCTGCATCT+AGG | 0.484900 | 7.1:+14961991 | None:intergenic |
AATGGTTAAATTACCTCAAG+TGG | 0.493654 | 7.1:+14960369 | None:intergenic |
CCTGTCATGGTTGAGTTGGA+GGG | 0.500999 | 7.1:-14960402 | MS.gene017939:CDS |
GCAGGAAGGTGCAGAGGAGG+AGG | 0.505888 | 7.1:-14962036 | MS.gene017939:intron |
ACCTCAATTTCAGGCTCTGG+TGG | 0.507724 | 7.1:+14962121 | None:intergenic |
GGGAGTTGATGAGCTGATTG+TGG | 0.508386 | 7.1:-14958951 | MS.gene017939:CDS |
GGAAAAGGAAGATGCTGCTC+CGG | 0.509327 | 7.1:-14961958 | MS.gene017939:CDS |
TGACTAAGTATGAGCGTGCT+AGG | 0.520533 | 7.1:-14961905 | MS.gene017939:CDS |
ATCCGTCGCTACTTGCCTGA+TGG | 0.540830 | 7.1:-14959106 | MS.gene017939:CDS |
TGCACCTGTCATGGTTGAGT+TGG | 0.547769 | 7.1:-14960406 | MS.gene017939:CDS |
TTCCATCAGGCAAGTAGCGA+CGG | 0.559984 | 7.1:+14959104 | None:intergenic |
TGTGCAGGAAGGTGCAGAGG+AGG | 0.563259 | 7.1:-14962039 | MS.gene017939:intron |
GTCGCTACTTGCCTGATGGA+AGG | 0.581718 | 7.1:-14959102 | MS.gene017939:intron |
AAACCTGATTTGAAGAGCGC+GGG | 0.585792 | 7.1:+14961872 | None:intergenic |
GACTCCTGGAAGAGACAAGT+GGG | 0.586530 | 7.1:-14958926 | MS.gene017939:CDS |
AGGAGAACCAATTGAAACTG+AGG | 0.593065 | 7.1:-14961979 | MS.gene017939:CDS |
CAGTATGAATGCACCTGTCA+TGG | 0.596445 | 7.1:-14960415 | MS.gene017939:CDS |
CTCCGGTTGAACGTCCCAGA+AGG | 0.600340 | 7.1:-14961941 | MS.gene017939:CDS |
ATCAGGCAAGTAGCGACGGA+TGG | 0.606515 | 7.1:+14959108 | None:intergenic |
CTGTCATGGTTGAGTTGGAG+GGG | 0.614709 | 7.1:-14960401 | MS.gene017939:CDS |
AATGATGACCTAGATGCAGA+AGG | 0.620982 | 7.1:-14961999 | MS.gene017939:CDS |
TGTCATGGTTGAGTTGGAGG+GGG | 0.622677 | 7.1:-14960400 | MS.gene017939:CDS |
TAAACCTGATTTGAAGAGCG+CGG | 0.623407 | 7.1:+14961871 | None:intergenic |
GACTACGAAGATATCGACAT+GGG | 0.632471 | 7.1:-14962271 | MS.gene017939:CDS |
ATGGTTAAATTACCTCAAGT+GGG | 0.636541 | 7.1:+14960370 | None:intergenic |
AGACTCCTGGAAGAGACAAG+TGG | 0.644950 | 7.1:-14958927 | MS.gene017939:CDS |
TTGTCCAGCTATGAAGATTG+GGG | 0.646097 | 7.1:-14958971 | MS.gene017939:intron |
GATATCTTCGTAGTCATCGT+CGG | 0.659789 | 7.1:+14962279 | None:intergenic |
TGACTACGAAGATATCGACA+TGG | 0.677574 | 7.1:-14962272 | MS.gene017939:CDS |
GCATGTGCAGGAAGGTGCAG+AGG | 0.686778 | 7.1:-14962042 | MS.gene017939:intron |
ATTAAAACGATGCAGGTACG+AGG | 0.688503 | 7.1:-14962149 | MS.gene017939:intron |
CCATGAAGGAGCTACGAGAG+CGG | 0.693186 | 7.1:-14959144 | MS.gene017939:CDS |
AAAACGATGCAGGTACGAGG+AGG | 0.694919 | 7.1:-14962146 | MS.gene017939:intron |
TCCTGGAAGAGACAAGTGGG+TGG | 0.726072 | 7.1:-14958923 | MS.gene017939:CDS |
ACTACGAAGATATCGACATG+GGG | 0.760905 | 7.1:-14962270 | MS.gene017939:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CACATAATTAATAATTAATT+AGG | - | chr7.1:14958978-14958997 | MS.gene017939:intron | 10.0% |
!! | AATACCAAAAAAAAAAAAAG+GGG | + | chr7.1:14961815-14961834 | None:intergenic | 15.0% |
!! | CAATACCAAAAAAAAAAAAA+GGG | + | chr7.1:14961816-14961835 | None:intergenic | 15.0% |
!!! | AATAGGCTTATTTTTATATT+AGG | - | chr7.1:14961234-14961253 | MS.gene017939:intron | 15.0% |
!!! | ATGATTGTTTAAGATTTTAA+AGG | + | chr7.1:14960716-14960735 | None:intergenic | 15.0% |
!!! | CTTCTTTTTTTCTTTAATTA+GGG | - | chr7.1:14959110-14959129 | MS.gene017939:CDS | 15.0% |
!!! | TCTTCTTTTTTTCTTTAATT+AGG | - | chr7.1:14959109-14959128 | MS.gene017939:CDS | 15.0% |
!! | AAAGAAAAAAAGAAGAAGTA+TGG | + | chr7.1:14959105-14959124 | None:intergenic | 20.0% |
!! | AAATTGAACTATGTTAACAT+GGG | - | chr7.1:14959658-14959677 | MS.gene017939:intron | 20.0% |
!! | AATAAGCAAAATCATACATA+GGG | + | chr7.1:14959370-14959389 | None:intergenic | 20.0% |
!! | ATACCAAAAAAAAAAAAAGG+GGG | + | chr7.1:14961814-14961833 | None:intergenic | 20.0% |
!! | ATTTATGTAACATGCAATAA+AGG | + | chr7.1:14960286-14960305 | None:intergenic | 20.0% |
!! | GCAATACCAAAAAAAAAAAA+AGG | + | chr7.1:14961817-14961836 | None:intergenic | 20.0% |
!! | TAAATTGAACTATGTTAACA+TGG | - | chr7.1:14959657-14959676 | MS.gene017939:intron | 20.0% |
!! | TACTGTTTGTTTATTAAGTT+GGG | - | chr7.1:14962127-14962146 | MS.gene017939:CDS | 20.0% |
!! | TGAAAATTATAGCATAAACT+GGG | - | chr7.1:14961380-14961399 | MS.gene017939:intron | 20.0% |
!! | TTAAATCCTAAATTAACATG+TGG | + | chr7.1:14961548-14961567 | None:intergenic | 20.0% |
!! | TTAACATATACTTGTGTAAT+AGG | - | chr7.1:14959688-14959707 | MS.gene017939:intron | 20.0% |
!! | TTAGGATTTAAATATTCTCA+TGG | - | chr7.1:14961557-14961576 | MS.gene017939:intron | 20.0% |
!! | TTGAAAATTATAGCATAAAC+TGG | - | chr7.1:14961379-14961398 | MS.gene017939:intron | 20.0% |
!! | TTTAAAAAAAGTTTCATCGA+TGG | + | chr7.1:14961446-14961465 | None:intergenic | 20.0% |
!! | TTTCTATATTTCAATTGAGT+GGG | + | chr7.1:14960965-14960984 | None:intergenic | 20.0% |
!!! | ATCCATATTTTTTTTTGTGT+TGG | - | chr7.1:14961970-14961989 | MS.gene017939:CDS | 20.0% |
!!! | TTTTCTATATTTCAATTGAG+TGG | + | chr7.1:14960966-14960985 | None:intergenic | 20.0% |
! | AAACAACTTATCAATAGAGT+AGG | - | chr7.1:14960369-14960388 | MS.gene017939:intron | 25.0% |
! | AAGTTGTCAAACAAAATTTG+AGG | - | chr7.1:14959987-14960006 | MS.gene017939:intron | 25.0% |
! | ACAAGAAAGACAAAAAGTTA+TGG | + | chr7.1:14960756-14960775 | None:intergenic | 25.0% |
! | ACATACATGTATAGTAACAA+GGG | - | chr7.1:14961144-14961163 | MS.gene017939:intron | 25.0% |
! | ACTCTATTGATAAGTTGTTT+GGG | + | chr7.1:14960369-14960388 | None:intergenic | 25.0% |
! | AGATCAATAAAGTAGAAGTA+AGG | + | chr7.1:14961007-14961026 | None:intergenic | 25.0% |
! | AGCCAACACAAAAAAAAATA+TGG | + | chr7.1:14961975-14961994 | None:intergenic | 25.0% |
! | CTAACAAAAAGTTCTTTCAA+CGG | + | chr7.1:14960693-14960712 | None:intergenic | 25.0% |
! | CTACTGTTTGTTTATTAAGT+TGG | - | chr7.1:14962126-14962145 | MS.gene017939:CDS | 25.0% |
! | GAATAAGCAAAATCATACAT+AGG | + | chr7.1:14959371-14959390 | None:intergenic | 25.0% |
! | TACTCTATTGATAAGTTGTT+TGG | + | chr7.1:14960370-14960389 | None:intergenic | 25.0% |
! | TGATAATTAAGTTCTTGTTG+AGG | - | chr7.1:14959880-14959899 | MS.gene017939:intron | 25.0% |
! | TTCTATATTTCAATTGAGTG+GGG | + | chr7.1:14960964-14960983 | None:intergenic | 25.0% |
!! | AACTTTTATGTTGGAGAATA+TGG | + | chr7.1:14959906-14959925 | None:intergenic | 25.0% |
!! | ACATAAATTGACAAGCTTTT+TGG | - | chr7.1:14960298-14960317 | MS.gene017939:intron | 25.0% |
!! | TGCTATAATTTTCAAAGTTC+AGG | + | chr7.1:14961374-14961393 | None:intergenic | 25.0% |
!! | TGTATGTTCTAAATAGAGTA+AGG | + | chr7.1:14959630-14959649 | None:intergenic | 25.0% |
!! | TTGCAACTTTTATTGAAGTA+TGG | + | chr7.1:14960421-14960440 | None:intergenic | 25.0% |
!!! | AAAAATAAGCCTATTTCTGA+TGG | + | chr7.1:14961229-14961248 | None:intergenic | 25.0% |
!!! | ATCAATGGGTTATGTAAAAT+GGG | - | chr7.1:14959486-14959505 | MS.gene017939:intron | 25.0% |
!!! | GTTTTATTTTTAGAGTCCTT+TGG | - | chr7.1:14961596-14961615 | MS.gene017939:intron | 25.0% |
AATGGTTAAATTACCTCAAG+TGG | + | chr7.1:14960833-14960852 | None:intergenic | 30.0% | |
ACATGTATGTCAGCATATAT+TGG | + | chr7.1:14961134-14961153 | None:intergenic | 30.0% | |
ATACAAACAAGATCAACATC+TGG | + | chr7.1:14961074-14961093 | None:intergenic | 30.0% | |
ATCAATGGATGATGTAAAAC+AGG | + | chr7.1:14959539-14959558 | None:intergenic | 30.0% | |
ATCTGACCACATGTTAATTT+AGG | - | chr7.1:14961539-14961558 | MS.gene017939:intron | 30.0% | |
ATCTTAAACAATCATACTGC+AGG | - | chr7.1:14960721-14960740 | MS.gene017939:intron | 30.0% | |
ATGGTTAAATTACCTCAAGT+GGG | + | chr7.1:14960832-14960851 | None:intergenic | 30.0% | |
ATTAATTATGTGAGTGAGAG+AGG | + | chr7.1:14958970-14958989 | None:intergenic | 30.0% | |
ATTGCAATATGAACCTTACA+AGG | + | chr7.1:14960344-14960363 | None:intergenic | 30.0% | |
CTCATACTTAGTCATATACT+TGG | + | chr7.1:14959288-14959307 | None:intergenic | 30.0% | |
CTCTATTGATAAGTTGTTTG+GGG | + | chr7.1:14960368-14960387 | None:intergenic | 30.0% | |
CTGAACAAATGAACTATAAC+AGG | + | chr7.1:14961271-14961290 | None:intergenic | 30.0% | |
GACATACATGTATAGTAACA+AGG | - | chr7.1:14961143-14961162 | MS.gene017939:intron | 30.0% | |
GATCAAATTCCATCAGAAAT+AGG | - | chr7.1:14961217-14961236 | MS.gene017939:intron | 30.0% | |
TAAGAAATCTACATACGTGT+CGG | - | chr7.1:14959842-14959861 | MS.gene017939:intron | 30.0% | |
TGATCTCGTCTTCAAAATAT+AGG | + | chr7.1:14961202-14961221 | None:intergenic | 30.0% | |
TTAATTATGTGAGTGAGAGA+GGG | + | chr7.1:14958969-14958988 | None:intergenic | 30.0% | |
TTTACATCATCCATTGATCA+AGG | - | chr7.1:14959541-14959560 | MS.gene017939:intron | 30.0% | |
! | AGCTTTTTGGACAACAAAAT+AGG | - | chr7.1:14960311-14960330 | MS.gene017939:intron | 30.0% |
! | CTTTCTCCCTTTAAAGAAAA+AGG | - | chr7.1:14961347-14961366 | MS.gene017939:intron | 30.0% |
! | TATGCTTTGATCATTGACTA+TGG | - | chr7.1:14961091-14961110 | MS.gene017939:intron | 30.0% |
! | TCAGGACCTTTTTCTTTAAA+GGG | + | chr7.1:14961356-14961375 | None:intergenic | 30.0% |
! | TTATGTCGTACTTACCATTT+TGG | - | chr7.1:14962202-14962221 | MS.gene017939:intron | 30.0% |
! | TTCAGGACCTTTTTCTTTAA+AGG | + | chr7.1:14961357-14961376 | None:intergenic | 30.0% |
! | TTTTATTGAAGTATGGTGCT+TGG | + | chr7.1:14960414-14960433 | None:intergenic | 30.0% |
!! | GATCAATGGGTTATGTAAAA+TGG | - | chr7.1:14959485-14959504 | MS.gene017939:intron | 30.0% |
!!! | TTGCCCCCTTTTTTTTTTTT+TGG | - | chr7.1:14961808-14961827 | MS.gene017939:intron | 30.0% |
AAAGTACAAGCTATGGACAA+TGG | + | chr7.1:14961314-14961333 | None:intergenic | 35.0% | |
AAGTACGACATAAAAGATGG+AGG | + | chr7.1:14962195-14962214 | None:intergenic | 35.0% | |
AAGTATGGTACCTCAATTTC+AGG | + | chr7.1:14959090-14959109 | None:intergenic | 35.0% | |
AATTGTCCAGCTATGAAGAT+TGG | - | chr7.1:14962226-14962245 | MS.gene017939:intron | 35.0% | |
ACCAATTGAAACTGAGGAAA+AGG | - | chr7.1:14959226-14959245 | MS.gene017939:intron | 35.0% | |
ACTCATGATTAAAACGATGC+AGG | - | chr7.1:14959043-14959062 | MS.gene017939:intron | 35.0% | |
AGCTATGGAATCTTGATCAA+TGG | - | chr7.1:14959471-14959490 | MS.gene017939:intron | 35.0% | |
AGCTGTAAAAACGAATACTC+AGG | + | chr7.1:14960253-14960272 | None:intergenic | 35.0% | |
AGGGGAGAATTTAAACCAAA+CGG | + | chr7.1:14960605-14960624 | None:intergenic | 35.0% | |
AGTAGTATTTACCTTCCATC+AGG | + | chr7.1:14962111-14962130 | None:intergenic | 35.0% | |
ATAGAGTAAGGATGAGAAAG+AGG | + | chr7.1:14959618-14959637 | None:intergenic | 35.0% | |
ATATACTTGGAAGTCCTTCT+GGG | + | chr7.1:14959275-14959294 | None:intergenic | 35.0% | |
ATGTGCAATTGTGCATTACA+TGG | + | chr7.1:14961048-14961067 | None:intergenic | 35.0% | |
ATTGTCCAGCTATGAAGATT+GGG | - | chr7.1:14962227-14962246 | MS.gene017939:intron | 35.0% | |
CAAAAATCCAGAATAGATGC+TGG | - | chr7.1:14960162-14960181 | MS.gene017939:intron | 35.0% | |
CAGTACTGTAACAAGAAAGA+AGG | + | chr7.1:14960877-14960896 | None:intergenic | 35.0% | |
CATGGTACACTACTTAATGA+AGG | + | chr7.1:14961030-14961049 | None:intergenic | 35.0% | |
CATTGATCAAGGTAACCAAA+AGG | - | chr7.1:14959552-14959571 | MS.gene017939:intron | 35.0% | |
CATTTGTTCAGCTTGTAGAT+TGG | - | chr7.1:14961280-14961299 | MS.gene017939:intron | 35.0% | |
GCATAGTAGTGTATTGTACT+GGG | + | chr7.1:14960529-14960548 | None:intergenic | 35.0% | |
GCTATGGAATCTTGATCAAT+GGG | - | chr7.1:14959472-14959491 | MS.gene017939:intron | 35.0% | |
GGTAAGTACGACATAAAAGA+TGG | + | chr7.1:14962198-14962217 | None:intergenic | 35.0% | |
TCAACATGTAGCAATACCAA+AGG | + | chr7.1:14961615-14961634 | None:intergenic | 35.0% | |
TCAAGATTCCATAGCTAACA+TGG | + | chr7.1:14959467-14959486 | None:intergenic | 35.0% | |
TGAATCGCAAAGAGATCAAA+TGG | + | chr7.1:14960851-14960870 | None:intergenic | 35.0% | |
TGATGTAAAACAGGACAAAC+TGG | + | chr7.1:14959530-14959549 | None:intergenic | 35.0% | |
TGCATAGTAGTGTATTGTAC+TGG | + | chr7.1:14960530-14960549 | None:intergenic | 35.0% | |
TTGGTATTGCTACATGTTGA+GGG | - | chr7.1:14961615-14961634 | MS.gene017939:intron | 35.0% | |
TTGTGTGTAAAAACAGGGTA+AGG | - | chr7.1:14961713-14961732 | MS.gene017939:intron | 35.0% | |
TTTCAAGAAGCTTGACAGTT+AGG | + | chr7.1:14960463-14960482 | None:intergenic | 35.0% | |
TTTGGTATTGCTACATGTTG+AGG | - | chr7.1:14961614-14961633 | MS.gene017939:intron | 35.0% | |
! | AGGTCATCATTCTTGTTATC+AGG | + | chr7.1:14959191-14959210 | None:intergenic | 35.0% |
! | AGTTGGGTACTTCTTTTTCT+TGG | - | chr7.1:14962143-14962162 | MS.gene017939:intron | 35.0% |
! | CTTTTGTCAAAAAGTTGCCT+TGG | + | chr7.1:14960657-14960676 | None:intergenic | 35.0% |
! | GGAGTTGACAACTTTTATGT+TGG | + | chr7.1:14959915-14959934 | None:intergenic | 35.0% |
! | GGTACTTCTTTTTCTTGGAT+GGG | - | chr7.1:14962148-14962167 | MS.gene017939:intron | 35.0% |
! | TCCTTTTCCTCAGTTTCAAT+TGG | + | chr7.1:14959230-14959249 | None:intergenic | 35.0% |
!! | AAAATTTGAGGAGTGCTGAA+AGG | - | chr7.1:14959999-14960018 | MS.gene017939:intron | 35.0% |
!! | CTTTTGGTTACCTTGATCAA+TGG | + | chr7.1:14959554-14959573 | None:intergenic | 35.0% |
AAAAAAAAAGGGGGCAAACC+CGG | + | chr7.1:14961805-14961824 | None:intergenic | 40.0% | |
AACTCTTCAGATTGCCATGA+AGG | - | chr7.1:14962041-14962060 | MS.gene017939:intron | 40.0% | |
AATGATGACCTAGATGCAGA+AGG | - | chr7.1:14959200-14959219 | MS.gene017939:intron | 40.0% | |
ACAATGACTAAATGCCCGTT+TGG | - | chr7.1:14960587-14960606 | MS.gene017939:intron | 40.0% | |
ACACAGAAGCTGAAATCCTA+TGG | + | chr7.1:14960054-14960073 | None:intergenic | 40.0% | |
ACTACGAAGATATCGACATG+GGG | - | chr7.1:14958929-14958948 | MS.gene017939:CDS | 40.0% | |
ACTCCAGTGGTTTCTAATCT+AGG | + | chr7.1:14960087-14960106 | None:intergenic | 40.0% | |
AGACATCCAACGAAAATTCG+TGG | + | chr7.1:14959744-14959763 | None:intergenic | 40.0% | |
AGCCTCTTGTGTGTAAAAAC+AGG | - | chr7.1:14961707-14961726 | MS.gene017939:intron | 40.0% | |
AGGAGAACCAATTGAAACTG+AGG | - | chr7.1:14959220-14959239 | MS.gene017939:intron | 40.0% | |
ATGGTTCAACTGAAATCCAC+GGG | + | chr7.1:14959448-14959467 | None:intergenic | 40.0% | |
ATTAAAACGATGCAGGTACG+AGG | - | chr7.1:14959050-14959069 | MS.gene017939:intron | 40.0% | |
CAGTTGAACCATGTTAGCTA+TGG | - | chr7.1:14959456-14959475 | MS.gene017939:intron | 40.0% | |
CATATACTTGGAAGTCCTTC+TGG | + | chr7.1:14959276-14959295 | None:intergenic | 40.0% | |
CATGGTTCAACTGAAATCCA+CGG | + | chr7.1:14959449-14959468 | None:intergenic | 40.0% | |
CGAATACTCAGGTATCTTAG+AGG | + | chr7.1:14960242-14960261 | None:intergenic | 40.0% | |
CGTACAATACACCAAATGGT+GGG | - | chr7.1:14961739-14961758 | MS.gene017939:intron | 40.0% | |
GACTACGAAGATATCGACAT+GGG | - | chr7.1:14958928-14958947 | MS.gene017939:CDS | 40.0% | |
GAGGATTGCATTATGAGACA+AGG | - | chr7.1:14959955-14959974 | MS.gene017939:intron | 40.0% | |
GATATCTTCGTAGTCATCGT+CGG | + | chr7.1:14958923-14958942 | None:intergenic | 40.0% | |
GCCTCTTGTGTGTAAAAACA+GGG | - | chr7.1:14961708-14961727 | MS.gene017939:intron | 40.0% | |
GCTTGACAGTTAGGTTAAGT+TGG | + | chr7.1:14960454-14960473 | None:intergenic | 40.0% | |
GGGGAGAATTTAAACCAAAC+GGG | + | chr7.1:14960604-14960623 | None:intergenic | 40.0% | |
GTAAAACAGGACAAACTGGA+AGG | + | chr7.1:14959526-14959545 | None:intergenic | 40.0% | |
TACAAGCTATGGACAATGGT+TGG | + | chr7.1:14961310-14961329 | None:intergenic | 40.0% | |
TAGCTGGACAATTGCCAAAA+TGG | + | chr7.1:14962219-14962238 | None:intergenic | 40.0% | |
TGAACATAGATCACAGCCAT+AGG | - | chr7.1:14960035-14960054 | MS.gene017939:intron | 40.0% | |
TGACTACGAAGATATCGACA+TGG | - | chr7.1:14958927-14958946 | MS.gene017939:CDS | 40.0% | |
TGGACAACAAAATAGGTTGC+AGG | - | chr7.1:14960318-14960337 | MS.gene017939:intron | 40.0% | |
TGGTATTGCTACATGTTGAG+GGG | - | chr7.1:14961616-14961635 | MS.gene017939:intron | 40.0% | |
TTCATGGCAATCTGAAGAGT+TGG | + | chr7.1:14962042-14962061 | None:intergenic | 40.0% | |
TTGTCCAGCTATGAAGATTG+GGG | - | chr7.1:14962228-14962247 | MS.gene017939:intron | 40.0% | |
! | AACCACTGGAGTTTTCTTCA+TGG | - | chr7.1:14960095-14960114 | MS.gene017939:intron | 40.0% |
! | ACTTCTTTTTCTTGGATGGG+AGG | - | chr7.1:14962151-14962170 | MS.gene017939:intron | 40.0% |
! | AGCCAAGAAAGTACAAGCTA+TGG | + | chr7.1:14961321-14961340 | None:intergenic | 40.0% |
! | CTTCTTTTTCTTGGATGGGA+GGG | - | chr7.1:14962152-14962171 | MS.gene017939:intron | 40.0% |
! | GGATTTTTGTGATGCAGACT+AGG | + | chr7.1:14960151-14960170 | None:intergenic | 40.0% |
! | GGGTACTTCTTTTTCTTGGA+TGG | - | chr7.1:14962147-14962166 | MS.gene017939:intron | 40.0% |
! | GTCCATAGCTTGTACTTTCT+TGG | - | chr7.1:14961316-14961335 | MS.gene017939:intron | 40.0% |
! | TAAACCTGATTTGAAGAGCG+CGG | + | chr7.1:14959331-14959350 | None:intergenic | 40.0% |
! | TAGCTTGTACTTTCTTGGCT+CGG | - | chr7.1:14961321-14961340 | MS.gene017939:intron | 40.0% |
! | TTGATGATTGATGCATGTGC+AGG | - | chr7.1:14959145-14959164 | MS.gene017939:CDS | 40.0% |
! | TTTCCTCCACGAATTTTCGT+TGG | - | chr7.1:14959735-14959754 | MS.gene017939:intron | 40.0% |
!!! | ACCCTGTTTTTACACACAAG+AGG | + | chr7.1:14961712-14961731 | None:intergenic | 40.0% |
!!! | TTTTTGTGTTGGCTCTGCTA+TGG | - | chr7.1:14961981-14962000 | MS.gene017939:CDS | 40.0% |
AACTCCCCAATCTTCATAGC+TGG | + | chr7.1:14962235-14962254 | None:intergenic | 45.0% | |
AAGTAGCGACGGATGGTAAA+AGG | + | chr7.1:14962087-14962106 | None:intergenic | 45.0% | |
ACCATCCTGAGTTTGTCTCT+AGG | - | chr7.1:14959780-14959799 | MS.gene017939:intron | 45.0% | |
ACCTAGAGACAAACTCAGGA+TGG | + | chr7.1:14959784-14959803 | None:intergenic | 45.0% | |
ACTGCATCTTCTCGACAAAG+TGG | - | chr7.1:14959416-14959435 | MS.gene017939:intron | 45.0% | |
AGCTTGTACTTTCTTGGCTC+GGG | - | chr7.1:14961322-14961341 | MS.gene017939:intron | 45.0% | |
AGTAAGGATGAGAAAGAGGC+TGG | + | chr7.1:14959614-14959633 | None:intergenic | 45.0% | |
AGTTGTCAACTCCACTTGCA+TGG | - | chr7.1:14959922-14959941 | MS.gene017939:intron | 45.0% | |
CACAACCTAGAGACAAACTC+AGG | + | chr7.1:14959788-14959807 | None:intergenic | 45.0% | |
CAGTATGAATGCACCTGTCA+TGG | - | chr7.1:14960784-14960803 | MS.gene017939:intron | 45.0% | |
CATCCAACGAAAATTCGTGG+AGG | + | chr7.1:14959741-14959760 | None:intergenic | 45.0% | |
CATGGTTCACTCCTACAGAA+CGG | + | chr7.1:14960202-14960221 | None:intergenic | 45.0% | |
CCACAAAAGAACCATGCAAG+TGG | + | chr7.1:14959936-14959955 | None:intergenic | 45.0% | |
CTGCCTAGATTAGAAACCAC+TGG | - | chr7.1:14960081-14960100 | MS.gene017939:intron | 45.0% | |
GACAGAACCAGCATCTATTC+TGG | + | chr7.1:14960172-14960191 | None:intergenic | 45.0% | |
GCGTACAATACACCAAATGG+TGG | - | chr7.1:14961738-14961757 | MS.gene017939:intron | 45.0% | |
GCTGCGTACAATACACCAAA+TGG | - | chr7.1:14961735-14961754 | MS.gene017939:intron | 45.0% | |
GTCCATGAAGAAAACTCCAG+TGG | + | chr7.1:14960100-14960119 | None:intergenic | 45.0% | |
GTTGTTGTCATGTGACCGTA+AGG | - | chr7.1:14961661-14961680 | MS.gene017939:intron | 45.0% | |
TACATGTTGAGGGGTAACCT+TGG | - | chr7.1:14961625-14961644 | MS.gene017939:intron | 45.0% | |
TATGAGCGTGCTAGGATTCT+CGG | - | chr7.1:14959302-14959321 | MS.gene017939:intron | 45.0% | |
TCTCTAGGTTGTGAAACGCA+GGG | - | chr7.1:14959795-14959814 | MS.gene017939:intron | 45.0% | |
TGACTAAGTATGAGCGTGCT+AGG | - | chr7.1:14959294-14959313 | MS.gene017939:intron | 45.0% | |
TGATTGATGCATGTGCAGGA+AGG | - | chr7.1:14959149-14959168 | MS.gene017939:CDS | 45.0% | |
TTTCTTGGATGGGAGGGTTA+AGG | - | chr7.1:14962158-14962177 | MS.gene017939:intron | 45.0% | |
! | AAACCTGATTTGAAGAGCGC+GGG | + | chr7.1:14959330-14959349 | None:intergenic | 45.0% |
! | AATAGGTTGCAGGCCTTGTA+AGG | - | chr7.1:14960328-14960347 | MS.gene017939:intron | 45.0% |
! | CATTGCTCTTGCTTGCCTTT+TGG | + | chr7.1:14959570-14959589 | None:intergenic | 45.0% |
! | CCACTTGCATGGTTCTTTTG+TGG | - | chr7.1:14959933-14959952 | MS.gene017939:intron | 45.0% |
! | CTTGCATGGTTCTTTTGTGG+AGG | - | chr7.1:14959936-14959955 | MS.gene017939:intron | 45.0% |
! | TGTCAGGTTTTCCGTTCTGT+AGG | - | chr7.1:14960188-14960207 | MS.gene017939:intron | 45.0% |
! | TTGGTTCTCCTTCTGCATCT+AGG | + | chr7.1:14959211-14959230 | None:intergenic | 45.0% |
!! | CTTAGAGGCACTATCACTCA+AGG | + | chr7.1:14960227-14960246 | None:intergenic | 45.0% |
!! | GAATAGATGCTGGTTCTGTC+AGG | - | chr7.1:14960172-14960191 | MS.gene017939:intron | 45.0% |
!! | TCTACATACGTGTCGGTTGT+TGG | - | chr7.1:14959849-14959868 | MS.gene017939:intron | 45.0% |
!! | ACATAATTAATAATTAATTA+GGG | - | chr7.1:14958979-14958998 | MS.gene017939:intron | 5.0% |
AAAACGATGCAGGTACGAGG+AGG | - | chr7.1:14959053-14959072 | MS.gene017939:intron | 50.0% | |
AGACTCCTGGAAGAGACAAG+TGG | - | chr7.1:14962272-14962291 | MS.gene017939:CDS | 50.0% | |
AGCTGATTGTGGAAGACTCC+TGG | - | chr7.1:14962259-14962278 | MS.gene017939:intron | 50.0% | |
CAACTTTACCAGTTGCGCCA+AGG | + | chr7.1:14961645-14961664 | None:intergenic | 50.0% | |
CGTTCTGTAGGAGTGAACCA+TGG | - | chr7.1:14960200-14960219 | MS.gene017939:intron | 50.0% | |
CTCTAGGTTGTGAAACGCAG+GGG | - | chr7.1:14959796-14959815 | MS.gene017939:intron | 50.0% | |
GACTCCTGGAAGAGACAAGT+GGG | - | chr7.1:14962273-14962292 | MS.gene017939:CDS | 50.0% | |
GACTTGAACCCGTGACCTTA+CGG | + | chr7.1:14961679-14961698 | None:intergenic | 50.0% | |
GCACTATCACTCAAGGACCA+TGG | + | chr7.1:14960220-14960239 | None:intergenic | 50.0% | |
GGAAAAGGAAGATGCTGCTC+CGG | - | chr7.1:14959241-14959260 | MS.gene017939:intron | 50.0% | |
GGTACCTCAATTTCAGGCTC+TGG | + | chr7.1:14959084-14959103 | None:intergenic | 50.0% | |
GTCATGTGACCGTAAGGTCA+CGG | - | chr7.1:14961667-14961686 | MS.gene017939:intron | 50.0% | |
GTCTCTAGGTTGTGAAACGC+AGG | - | chr7.1:14959794-14959813 | MS.gene017939:intron | 50.0% | |
GTTCAACTGAAATCCACGGG+AGG | + | chr7.1:14959445-14959464 | None:intergenic | 50.0% | |
TCATGTGACCGTAAGGTCAC+GGG | - | chr7.1:14961668-14961687 | MS.gene017939:intron | 50.0% | |
TGCACCTGTCATGGTTGAGT+TGG | - | chr7.1:14960793-14960812 | MS.gene017939:intron | 50.0% | |
TGGGGGGAAAACACTTACCA+AGG | - | chr7.1:14960637-14960656 | MS.gene017939:intron | 50.0% | |
TGTGTATCCCTAACCACCGA+TGG | - | chr7.1:14959588-14959607 | MS.gene017939:intron | 50.0% | |
TTCCATCAGGCAAGTAGCGA+CGG | + | chr7.1:14962098-14962117 | None:intergenic | 50.0% | |
! | ACACACAAGAGGCTGTTTCC+AGG | + | chr7.1:14961701-14961720 | None:intergenic | 50.0% |
! | ACCTCAATTTCAGGCTCTGG+TGG | + | chr7.1:14959081-14959100 | None:intergenic | 50.0% |
! | ATGAGAAAGAGGCTGGCCAT+CGG | + | chr7.1:14959607-14959626 | None:intergenic | 50.0% |
! | CTCCCCTCACTGACTACTAT+GGG | - | chr7.1:14960618-14960637 | MS.gene017939:intron | 50.0% |
! | TCCCCTCACTGACTACTATG+GGG | - | chr7.1:14960619-14960638 | MS.gene017939:intron | 50.0% |
! | TCTCCCCTCACTGACTACTA+TGG | - | chr7.1:14960617-14960636 | MS.gene017939:intron | 50.0% |
!! | ACCTGTCATGGTTGAGTTGG+AGG | - | chr7.1:14960796-14960815 | MS.gene017939:intron | 50.0% |
!! | CCTGTCATGGTTGAGTTGGA+GGG | - | chr7.1:14960797-14960816 | MS.gene017939:intron | 50.0% |
!! | CTGTCATGGTTGAGTTGGAG+GGG | - | chr7.1:14960798-14960817 | MS.gene017939:intron | 50.0% |
!! | GCTTGGTGCAATCTCTAAGC+AGG | + | chr7.1:14960397-14960416 | None:intergenic | 50.0% |
!! | GGGAGTTGATGAGCTGATTG+TGG | - | chr7.1:14962248-14962267 | MS.gene017939:intron | 50.0% |
!! | TGTCATGGTTGAGTTGGAGG+GGG | - | chr7.1:14960799-14960818 | MS.gene017939:intron | 50.0% |
AAGGTCACGGGTTCAAGTCC+TGG | - | chr7.1:14961680-14961699 | MS.gene017939:intron | 55.0% | |
ACCACCCACTTGTCTCTTCC+AGG | + | chr7.1:14962280-14962299 | None:intergenic | 55.0% | |
ACTGAAGCTCCCGCATATGC+AGG | + | chr7.1:14961779-14961798 | None:intergenic | 55.0% | |
ATCAGGCAAGTAGCGACGGA+TGG | + | chr7.1:14962094-14962113 | None:intergenic | 55.0% | |
ATCCGTCGCTACTTGCCTGA+TGG | - | chr7.1:14962093-14962112 | MS.gene017939:intron | 55.0% | |
CCATGAAGGAGCTACGAGAG+CGG | - | chr7.1:14962055-14962074 | MS.gene017939:intron | 55.0% | |
CCCCCATAGTAGTCAGTGAG+GGG | + | chr7.1:14960623-14960642 | None:intergenic | 55.0% | |
CCCCCCATAGTAGTCAGTGA+GGG | + | chr7.1:14960624-14960643 | None:intergenic | 55.0% | |
CCCTCCAACTCAACCATGAC+AGG | + | chr7.1:14960800-14960819 | None:intergenic | 55.0% | |
CTGAAGCTCCCGCATATGCA+GGG | + | chr7.1:14961778-14961797 | None:intergenic | 55.0% | |
GACAAAGTGGTATCCTCCCG+TGG | - | chr7.1:14959429-14959448 | MS.gene017939:intron | 55.0% | |
GCCACCAGAGCCTGAAATTG+AGG | - | chr7.1:14959077-14959096 | MS.gene017939:intron | 55.0% | |
GTACCCGCGCTCTTCAAATC+AGG | - | chr7.1:14959324-14959343 | MS.gene017939:intron | 55.0% | |
GTCGCTACTTGCCTGATGGA+AGG | - | chr7.1:14962097-14962116 | MS.gene017939:intron | 55.0% | |
TCCCCCCATAGTAGTCAGTG+AGG | + | chr7.1:14960625-14960644 | None:intergenic | 55.0% | |
TCCTGGAAGAGACAAGTGGG+TGG | - | chr7.1:14962276-14962295 | MS.gene017939:CDS | 55.0% | |
! | CCCCTCACTGACTACTATGG+GGG | - | chr7.1:14960620-14960639 | MS.gene017939:intron | 55.0% |
! | CCCTCACTGACTACTATGGG+GGG | - | chr7.1:14960621-14960640 | MS.gene017939:intron | 55.0% |
!! | GTCCTTCTGGGACGTTCAAC+CGG | + | chr7.1:14959263-14959282 | None:intergenic | 55.0% |
AGGGGTAACCTTGGCGCAAC+TGG | - | chr7.1:14961634-14961653 | MS.gene017939:intron | 60.0% | |
ATGCGGGAGCTTCAGTGCAC+CGG | - | chr7.1:14961783-14961802 | MS.gene017939:intron | 60.0% | |
CATATGCAGGGTCCGGGAAG+GGG | + | chr7.1:14961766-14961785 | None:intergenic | 60.0% | |
CCGCTCTCGTAGCTCCTTCA+TGG | + | chr7.1:14962058-14962077 | None:intergenic | 60.0% | |
CTCCGGTTGAACGTCCCAGA+AGG | - | chr7.1:14959258-14959277 | MS.gene017939:intron | 60.0% | |
CTTCCCGGACCCTGCATATG+CGG | - | chr7.1:14961766-14961785 | MS.gene017939:intron | 60.0% | |
GCATATGCAGGGTCCGGGAA+GGG | + | chr7.1:14961767-14961786 | None:intergenic | 60.0% | |
GGGGGAAACTGACCCACTTG+AGG | - | chr7.1:14960817-14960836 | MS.gene017939:intron | 60.0% | |
TTCCCGGACCCTGCATATGC+GGG | - | chr7.1:14961767-14961786 | MS.gene017939:intron | 60.0% | |
! | AGAAAGAGGCTGGCCATCGG+TGG | + | chr7.1:14959604-14959623 | None:intergenic | 60.0% |
! | AGGCTGGCCATCGGTGGTTA+GGG | + | chr7.1:14959598-14959617 | None:intergenic | 60.0% |
! | CAAATGGTGGGACCCCTTCC+CGG | - | chr7.1:14961751-14961770 | MS.gene017939:intron | 60.0% |
! | GCATGTGCAGGAAGGTGCAG+AGG | - | chr7.1:14959157-14959176 | MS.gene017939:intron | 60.0% |
! | TGTGCAGGAAGGTGCAGAGG+AGG | - | chr7.1:14959160-14959179 | MS.gene017939:intron | 60.0% |
CGCATATGCAGGGTCCGGGA+AGG | + | chr7.1:14961768-14961787 | None:intergenic | 65.0% | |
CGGGAAGGGGTCCCACCATT+TGG | + | chr7.1:14961753-14961772 | None:intergenic | 65.0% | |
CTCCCGCATATGCAGGGTCC+GGG | + | chr7.1:14961772-14961791 | None:intergenic | 65.0% | |
GCTCCCGCATATGCAGGGTC+CGG | + | chr7.1:14961773-14961792 | None:intergenic | 65.0% | |
TGCGGGAGCTTCAGTGCACC+GGG | - | chr7.1:14961784-14961803 | MS.gene017939:intron | 65.0% | |
! | GAGGCTGGCCATCGGTGGTT+AGG | + | chr7.1:14959599-14959618 | None:intergenic | 65.0% |
! | GCAGGAAGGTGCAGAGGAGG+AGG | - | chr7.1:14959163-14959182 | MS.gene017939:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 14958916 | 14962305 | 14958916 | ID=MS.gene017939 |
chr7.1 | mRNA | 14958916 | 14962305 | 14958916 | ID=MS.gene017939.t1;Parent=MS.gene017939 |
chr7.1 | exon | 14962271 | 14962305 | 14962271 | ID=MS.gene017939.t1.exon1;Parent=MS.gene017939.t1 |
chr7.1 | CDS | 14962271 | 14962305 | 14962271 | ID=cds.MS.gene017939.t1;Parent=MS.gene017939.t1 |
chr7.1 | exon | 14962123 | 14962156 | 14962123 | ID=MS.gene017939.t1.exon2;Parent=MS.gene017939.t1 |
chr7.1 | CDS | 14962123 | 14962156 | 14962123 | ID=cds.MS.gene017939.t1;Parent=MS.gene017939.t1 |
chr7.1 | exon | 14961876 | 14962054 | 14961876 | ID=MS.gene017939.t1.exon3;Parent=MS.gene017939.t1 |
chr7.1 | CDS | 14961876 | 14962054 | 14961876 | ID=cds.MS.gene017939.t1;Parent=MS.gene017939.t1 |
chr7.1 | exon | 14960383 | 14960434 | 14960383 | ID=MS.gene017939.t1.exon4;Parent=MS.gene017939.t1 |
chr7.1 | CDS | 14960383 | 14960434 | 14960383 | ID=cds.MS.gene017939.t1;Parent=MS.gene017939.t1 |
chr7.1 | exon | 14959103 | 14959170 | 14959103 | ID=MS.gene017939.t1.exon5;Parent=MS.gene017939.t1 |
chr7.1 | CDS | 14959103 | 14959170 | 14959103 | ID=cds.MS.gene017939.t1;Parent=MS.gene017939.t1 |
chr7.1 | exon | 14958916 | 14958985 | 14958916 | ID=MS.gene017939.t1.exon6;Parent=MS.gene017939.t1 |
chr7.1 | CDS | 14958916 | 14958985 | 14958916 | ID=cds.MS.gene017939.t1;Parent=MS.gene017939.t1 |
Gene Sequence |
Protein sequence |