AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene021324

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021324.t1 MTR_0019s0160 97.222 144 4 0 1 144 1 144 5.60e-98 278
MS.gene021324.t1 MTR_7g092450 84.138 145 22 1 1 144 1 145 9.50e-73 214
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene021324.t1 AT5G51940 79.310 145 28 2 1 144 1 144 1.04e-72 214
MS.gene021324.t1 AT2G04630 79.310 145 28 2 1 144 1 144 9.51e-72 212

Find 46 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATGAGCGTGCACGGATTT+TGG 0.198808 6.1:+47883119 MS.gene021324:CDS
TTTCTCTCGAAGCTCTTTCA+TGG 0.343115 6.1:-47884297 None:intergenic
GACTCATGGAAGAGGCAAAT+TGG 0.371145 6.1:+47884534 MS.gene021324:CDS
GCCTATTGAAACCGAGGAAA+AGG 0.427074 6.1:+47883044 MS.gene021324:CDS
GAATTCCTTACTTCAATCTC+AGG 0.430246 6.1:-47882885 None:intergenic
AATTGTGCAGCTATGAAGAT+TGG 0.435283 6.1:+47884487 MS.gene021324:intron
ATTGTGCAGCTATGAAGATT+GGG 0.436731 6.1:+47884488 MS.gene021324:intron
GTCTTTCGAGGCCTTTCTGT+TGG 0.438965 6.1:-47883078 None:intergenic
AATCCGTGCACGCTCATACT+TGG 0.443078 6.1:-47883115 None:intergenic
GTACCCGTGCTCTTCAAATC+AGG 0.449097 6.1:+47883142 MS.gene021324:CDS
GGCAAATTGGTGGTGATTGA+TGG 0.457288 6.1:+47884547 MS.gene021324:CDS
ATATATTTCGATGTCTTTCG+AGG 0.473400 6.1:-47883090 None:intergenic
ACTTCAATCTCAGGATCTAC+TGG 0.475450 6.1:-47882876 None:intergenic
GACTACAATGACTTGGACAT+CGG 0.488556 6.1:+47881733 MS.gene021324:CDS
GATTGTAATTACCTTCCATC+AGG 0.491559 6.1:-47884350 None:intergenic
GGGAGTTGATGAATTGATTG+TGG 0.509393 6.1:+47884509 MS.gene021324:CDS
CCTTCCAACTCAACCATGAC+AGG 0.524719 6.1:-47883278 None:intergenic
ACTACAATGACTTGGACATC+GGG 0.528904 6.1:+47881734 MS.gene021324:CDS
AAGTAACGACGGATCGTGAA+GGG 0.541998 6.1:-47884326 None:intergenic
CGACGACGACTACAATGACT+TGG 0.542431 6.1:+47881726 MS.gene021324:CDS
TGCACCTGTCATGGTTGAGT+TGG 0.544974 6.1:+47883274 MS.gene021324:CDS
ATCCGTCGTTACTTGCCTGA+TGG 0.545359 6.1:+47884335 MS.gene021324:CDS
CTGTCATGGTTGAGTTGGAA+GGG 0.548671 6.1:+47883279 MS.gene021324:CDS
AATTGATTGTGGAAGACTCA+TGG 0.564886 6.1:+47884520 MS.gene021324:CDS
GACAACAATGATGAGATGGC+TGG 0.565670 6.1:+47883018 MS.gene021324:CDS
AAAGTTTCTCGTACCTCAAG+CGG 0.565990 6.1:-47883311 None:intergenic
AACAAGAAGAGCCAACAGAA+AGG 0.566880 6.1:+47883067 MS.gene021324:CDS
AATACCTGATTTGAAGAGCA+CGG 0.568038 6.1:-47883146 None:intergenic
CAAGTAACGACGGATCGTGA+AGG 0.577624 6.1:-47884327 None:intergenic
ATACCTGATTTGAAGAGCAC+GGG 0.578359 6.1:-47883145 None:intergenic
TGACCAAGTATGAGCGTGCA+CGG 0.583030 6.1:+47883112 MS.gene021324:CDS
GTCGTTACTTGCCTGATGGA+AGG 0.583890 6.1:+47884339 MS.gene021324:CDS
TTGTGGAAGACTCATGGAAG+AGG 0.587346 6.1:+47884526 MS.gene021324:CDS
CCTGTCATGGTTGAGTTGGA+AGG 0.591673 6.1:+47883278 MS.gene021324:CDS
AAGTTTCTCGTACCTCAAGC+GGG 0.593900 6.1:-47883310 None:intergenic
CAAGTCATTGTAGTCGTCGT+CGG 0.596315 6.1:-47881725 None:intergenic
AAGTATGAATGCACCTGTCA+TGG 0.600527 6.1:+47883265 MS.gene021324:intron
TTGATAGGAAGGTGCAGAGG+TGG 0.602482 6.1:+47882981 MS.gene021324:intron
TGTCATGGTTGAGTTGGAAG+GGG 0.604272 6.1:+47883280 MS.gene021324:CDS
AGGGGAAACTGACCCGCTTG+AGG 0.609424 6.1:+47883298 MS.gene021324:CDS
TCATGGAAGAGGCAAATTGG+TGG 0.616416 6.1:+47884537 MS.gene021324:CDS
CAACGACAACAATGATGAGA+TGG 0.626792 6.1:+47883014 MS.gene021324:CDS
TGGAGAGCCTATTGAAACCG+AGG 0.643087 6.1:+47883038 MS.gene021324:CDS
TTCCATCAGGCAAGTAACGA+CGG 0.645675 6.1:-47884337 None:intergenic
TTGTGCAGCTATGAAGATTG+GGG 0.646097 6.1:+47884489 MS.gene021324:intron
TGGTTGATAGGAAGGTGCAG+AGG 0.655672 6.1:+47882978 MS.gene021324:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+AGG - chr6.1:47884388-47884407 None:intergenic 0.0%
!! AAAAAAAAAAAAAAAAAAAA+GGG - chr6.1:47884388-47884407 None:intergenic 0.0%
!! AAAACAATTAATAATCAATT+TGG - chr6.1:47884163-47884182 None:intergenic 10.0%
!! ATTATTGTAATATGAAAATA+TGG - chr6.1:47883749-47883768 None:intergenic 10.0%
!! TAATTTAAAAAATTCATCAA+CGG - chr6.1:47882957-47882976 None:intergenic 10.0%
!! TCAAAAATGAAAATTAAATT+GGG - chr6.1:47881833-47881852 None:intergenic 10.0%
!! TTCAAAAATGAAAATTAAAT+TGG - chr6.1:47881834-47881853 None:intergenic 10.0%
!! TTTATAATCTTATTATTCAA+AGG - chr6.1:47884105-47884124 None:intergenic 10.0%
!!! TGATGAATTTTTTAAATTAT+TGG + chr6.1:47882958-47882977 MS.gene021324:intron 10.0%
!! AAAAATAATAAAACGATATC+AGG - chr6.1:47881881-47881900 None:intergenic 15.0%
!! ACAAACATATATGAATATTA+AGG + chr6.1:47882925-47882944 MS.gene021324:intron 15.0%
!! CAAAAATGAAAATTAAATTG+GGG - chr6.1:47881832-47881851 None:intergenic 15.0%
!! GGAATTAATTATTATCAATA+AGG - chr6.1:47881860-47881879 None:intergenic 15.0%
!!! TTTTTAAATTATTGGTTGAT+AGG + chr6.1:47882966-47882985 MS.gene021324:intron 15.0%
!!! TTTTTTTTTAGTTTTGGAAA+GGG + chr6.1:47884400-47884419 MS.gene021324:intron 15.0%
!!! TTTTTTTTTTAGTTTTGGAA+AGG + chr6.1:47884399-47884418 MS.gene021324:intron 15.0%
!! AAAAGATCATACAGTTTAAA+AGG + chr6.1:47882735-47882754 MS.gene021324:intron 20.0%
!! AAGATTATAAATATCTCCTT+TGG + chr6.1:47884114-47884133 MS.gene021324:intron 20.0%
!! AATATGAAAATATGGAAAGA+AGG - chr6.1:47883741-47883760 None:intergenic 20.0%
!! ACAAAACATAAAAATGAACA+TGG - chr6.1:47881935-47881954 None:intergenic 20.0%
!! ATAAGCATTTATCATGATAA+AGG + chr6.1:47882374-47882393 MS.gene021324:intron 20.0%
!! ATATGAAAATATGGAAAGAA+GGG - chr6.1:47883740-47883759 None:intergenic 20.0%
!! ATCATGTTAAAACATTTACA+AGG - chr6.1:47883225-47883244 None:intergenic 20.0%
!! GCTTAAAAACATGAATATAT+AGG - chr6.1:47882000-47882019 None:intergenic 20.0%
!! TATAGGAAGAAAAAACAAAA+AGG - chr6.1:47881983-47882002 None:intergenic 20.0%
!! TCTAATTTCAAAACATATGT+CGG + chr6.1:47883478-47883497 MS.gene021324:intron 20.0%
!!! AAATTTTAATATGTGAAGAG+TGG + chr6.1:47883772-47883791 MS.gene021324:intron 20.0%
!!! AATCTTTAAAGACATGTATA+TGG - chr6.1:47882450-47882469 None:intergenic 20.0%
!!! ATCAATTTGGAATTGATATA+TGG - chr6.1:47884150-47884169 None:intergenic 20.0%
!!! TAAACTGTATGATCTTTTTT+AGG - chr6.1:47882733-47882752 None:intergenic 20.0%
!!! TTTATTTTGAAATATAGACC+AGG - chr6.1:47883664-47883683 None:intergenic 20.0%
! AAAACACATATCTCATTAAC+TGG - chr6.1:47882788-47882807 None:intergenic 25.0%
! AGATACTAACATATCAAGTT+AGG - chr6.1:47883422-47883441 None:intergenic 25.0%
! ATCATACAGTTTAAAAGGAA+TGG + chr6.1:47882740-47882759 MS.gene021324:intron 25.0%
! GAGCTAAACATTCAAATTAT+AGG - chr6.1:47883838-47883857 None:intergenic 25.0%
! GTGAAGTTAAAATATTGTTC+TGG + chr6.1:47883190-47883209 MS.gene021324:intron 25.0%
! TAATGTTCATTGAAAAGAAC+TGG + chr6.1:47884004-47884023 MS.gene021324:intron 25.0%
! TCATATATGTTTGTGTTAGT+CGG - chr6.1:47882919-47882938 None:intergenic 25.0%
! TCTCTCATAACAAATTTGAA+TGG + chr6.1:47882832-47882851 MS.gene021324:intron 25.0%
! TTATAAATATCTCCTTTGGA+TGG + chr6.1:47884118-47884137 MS.gene021324:intron 25.0%
! TTGAATGTAATAACATGTGT+CGG + chr6.1:47882610-47882629 MS.gene021324:intron 25.0%
! TTGGAATTGATATATGGTAT+TGG - chr6.1:47884144-47884163 None:intergenic 25.0%
!! AAAAAGGTTACATTTTGCTT+TGG - chr6.1:47881967-47881986 None:intergenic 25.0%
!! AAACCTAAACATTCATTTTG+TGG + chr6.1:47883939-47883958 MS.gene021324:intron 25.0%
!! CTTAACCATTTGATACATTT+TGG + chr6.1:47884232-47884251 MS.gene021324:intron 25.0%
!! GCTTATTTGAGTTTATCTAA+TGG + chr6.1:47882050-47882069 MS.gene021324:intron 25.0%
!! GGAAAAATTTGTTCTTTCAA+AGG - chr6.1:47882712-47882731 None:intergenic 25.0%
!! GTTTTGTAGTATATTACTAG+TGG + chr6.1:47882803-47882822 MS.gene021324:intron 25.0%
!! TACATGTCTTTAAAGATTGA+AGG + chr6.1:47882452-47882471 MS.gene021324:intron 25.0%
!!! TAAATTATTGGTTGATAGGA+AGG + chr6.1:47882970-47882989 MS.gene021324:intron 25.0%
!!! TACATATGTTTTGAAGTCAA+CGG - chr6.1:47884050-47884069 None:intergenic 25.0%
!!! TCAAATTCATTAGTTTGCAA+GGG + chr6.1:47884191-47884210 MS.gene021324:intron 25.0%
!!! TTAAGCTTGTTTTGCATTAT+GGG + chr6.1:47882014-47882033 MS.gene021324:intron 25.0%
!!! TTCAAATTCATTAGTTTGCA+AGG + chr6.1:47884190-47884209 MS.gene021324:intron 25.0%
!!! TTTAAGCTTGTTTTGCATTA+TGG + chr6.1:47882013-47882032 MS.gene021324:intron 25.0%
!!! TTTTTTTTTGTACGTTCTCT+AGG + chr6.1:47882278-47882297 MS.gene021324:intron 25.0%
AAATGAAAGATTTCAGGCTT+TGG + chr6.1:47883910-47883929 MS.gene021324:intron 30.0%
ATACAGTTTAAAAGGAATGG+AGG + chr6.1:47882743-47882762 MS.gene021324:intron 30.0%
ATATATTTCGATGTCTTTCG+AGG - chr6.1:47883093-47883112 None:intergenic 30.0%
CATTATGGGTATGTTTGAAT+TGG + chr6.1:47882028-47882047 MS.gene021324:intron 30.0%
CCTGAAATCTTTCATTTACA+GGG - chr6.1:47883907-47883926 None:intergenic 30.0%
CTAACTTTAATCACTCACTT+TGG + chr6.1:47883554-47883573 MS.gene021324:intron 30.0%
CTGAAATCTTTCATTTACAG+GGG - chr6.1:47883906-47883925 None:intergenic 30.0%
GAACCACAAAATGAATGTTT+AGG - chr6.1:47883945-47883964 None:intergenic 30.0%
TACAGTTTAAAAGGAATGGA+GGG + chr6.1:47882744-47882763 MS.gene021324:intron 30.0%
TGTGTCCAAAATGTATCAAA+TGG - chr6.1:47884240-47884259 None:intergenic 30.0%
TTAAACTGTTTAGCCAAACA+TGG + chr6.1:47882417-47882436 MS.gene021324:intron 30.0%
TTGAACATAATCACATGTGT+TGG + chr6.1:47882141-47882160 MS.gene021324:intron 30.0%
! TAACATGATGTCTTGTCTTT+TGG + chr6.1:47883236-47883255 MS.gene021324:intron 30.0%
! TTTCTCTTTAGTTTCCTAGA+AGG + chr6.1:47883636-47883655 MS.gene021324:intron 30.0%
!!! ACATATGTTTTGAAGTCAAC+GGG - chr6.1:47884049-47884068 None:intergenic 30.0%
AATTGATTGTGGAAGACTCA+TGG + chr6.1:47884520-47884539 MS.gene021324:CDS 35.0%
AATTGTGCAGCTATGAAGAT+TGG + chr6.1:47884487-47884506 MS.gene021324:intron 35.0%
ATATGGACTTAGACCATGTT+TGG - chr6.1:47882433-47882452 None:intergenic 35.0%
ATGGCTAAACAAGACATTTG+TGG - chr6.1:47881916-47881935 None:intergenic 35.0%
ATTACCACACTCACCAAATT+AGG + chr6.1:47881800-47881819 MS.gene021324:intron 35.0%
ATTGGGGAAAAACCCTAATT+TGG - chr6.1:47881816-47881835 None:intergenic 35.0%
ATTGTGCAGCTATGAAGATT+GGG + chr6.1:47884488-47884507 MS.gene021324:intron 35.0%
CAGAGGAAACATGAACTATA+AGG - chr6.1:47883877-47883896 None:intergenic 35.0%
CCCTGTAAATGAAAGATTTC+AGG + chr6.1:47883904-47883923 MS.gene021324:intron 35.0%
GAATTCCTTACTTCAATCTC+AGG - chr6.1:47882888-47882907 None:intergenic 35.0%
GATTGTAATTACCTTCCATC+AGG - chr6.1:47884353-47884372 None:intergenic 35.0%
GCCTGAAATCTTTCATTTAC+AGG - chr6.1:47883908-47883927 None:intergenic 35.0%
TAGATCCTGAGATTGAAGTA+AGG + chr6.1:47882880-47882899 MS.gene021324:intron 35.0%
TGCATTTGAGTATGTCTGAA+GGG + chr6.1:47883377-47883396 MS.gene021324:intron 35.0%
TTACCACACTCACCAAATTA+GGG + chr6.1:47881801-47881820 MS.gene021324:intron 35.0%
! AATACCTGATTTGAAGAGCA+CGG - chr6.1:47883149-47883168 None:intergenic 35.0%
! ATAATCACATGTGTTGGTGT+TGG + chr6.1:47882147-47882166 MS.gene021324:intron 35.0%
!!! ACAGAGGTTCTAAGACTTTT+TGG + chr6.1:47882198-47882217 MS.gene021324:intron 35.0%
AAAGTTTCTCGTACCTCAAG+CGG - chr6.1:47883314-47883333 None:intergenic 40.0%
AACAAGAAGAGCCAACAGAA+AGG + chr6.1:47883067-47883086 MS.gene021324:CDS 40.0%
AAGTATGAATGCACCTGTCA+TGG + chr6.1:47883265-47883284 MS.gene021324:intron 40.0%
ACAGAAAACGCATGACATGA+AGG - chr6.1:47884459-47884478 None:intergenic 40.0%
ACTTCAATCTCAGGATCTAC+TGG - chr6.1:47882879-47882898 None:intergenic 40.0%
AGTGGCCTTCATATGGAATT+GGG + chr6.1:47883509-47883528 MS.gene021324:intron 40.0%
ATAGACTAGTGGCCTTCATA+TGG + chr6.1:47883502-47883521 MS.gene021324:intron 40.0%
ATATAGACCAGGTACCTTCT+AGG - chr6.1:47883653-47883672 None:intergenic 40.0%
CAACGACAACAATGATGAGA+TGG + chr6.1:47883014-47883033 MS.gene021324:CDS 40.0%
CATATGTCGGTATAGACTAG+TGG + chr6.1:47883491-47883510 MS.gene021324:intron 40.0%
CATCCATAGTTAGCAAGTCA+AGG - chr6.1:47883605-47883624 None:intergenic 40.0%
CTGCATTTGAGTATGTCTGA+AGG + chr6.1:47883376-47883395 MS.gene021324:intron 40.0%
CTTTCCCCAATTCCATATGA+AGG - chr6.1:47883517-47883536 None:intergenic 40.0%
TAGTGGCCTTCATATGGAAT+TGG + chr6.1:47883508-47883527 MS.gene021324:intron 40.0%
TATTACCAGTGTAGACGTGT+CGG - chr6.1:47882102-47882121 None:intergenic 40.0%
TTGTGCAGCTATGAAGATTG+GGG + chr6.1:47884489-47884508 MS.gene021324:intron 40.0%
TTTCTCTCGAAGCTCTTTCA+TGG - chr6.1:47884300-47884319 None:intergenic 40.0%
! AAACCCTAATTTGGTGAGTG+TGG - chr6.1:47881807-47881826 None:intergenic 40.0%
! ACTACAATGACTTGGACATC+GGG + chr6.1:47881734-47881753 MS.gene021324:CDS 40.0%
! ACTGCTAAAGTGCTCATGTA+TGG + chr6.1:47883698-47883717 MS.gene021324:intron 40.0%
! ATACCTGATTTGAAGAGCAC+GGG - chr6.1:47883148-47883167 None:intergenic 40.0%
! CTCTTCTTGTTCCTTTTCCT+CGG - chr6.1:47883058-47883077 None:intergenic 40.0%
! CTGCTAAAGTGCTCATGTAT+GGG + chr6.1:47883699-47883718 MS.gene021324:intron 40.0%
! GACTACAATGACTTGGACAT+CGG + chr6.1:47881733-47881752 MS.gene021324:CDS 40.0%
! TCCTTTTCCTCGGTTTCAAT+AGG - chr6.1:47883048-47883067 None:intergenic 40.0%
!! ATATGGTATTGGCCATCCAA+AGG - chr6.1:47884133-47884152 None:intergenic 40.0%
!! GGGAGTTGATGAATTGATTG+TGG + chr6.1:47884509-47884528 MS.gene021324:CDS 40.0%
!! TGACTTGCTAACTATGGATG+TGG + chr6.1:47883605-47883624 MS.gene021324:intron 40.0%
!! TGTCCTTGACTTGCTAACTA+TGG + chr6.1:47883599-47883618 MS.gene021324:intron 40.0%
!! TTAGTTTCCTAGAAGGTACC+TGG + chr6.1:47883643-47883662 MS.gene021324:intron 40.0%
!!! TAGTTTTGGAAAGGGTTGAG+TGG + chr6.1:47884408-47884427 MS.gene021324:intron 40.0%
!!! TTTTGTACGTTCTCTAGGAC+AGG + chr6.1:47882283-47882302 MS.gene021324:intron 40.0%
AAGTAACGACGGATCGTGAA+GGG - chr6.1:47884329-47884348 None:intergenic 45.0%
AAGTCAAGGACACCGTTAAC+TGG - chr6.1:47883591-47883610 None:intergenic 45.0%
AAGTTTCTCGTACCTCAAGC+GGG - chr6.1:47883313-47883332 None:intergenic 45.0%
AGAGTGGTTCTCTTGTGAGA+TGG + chr6.1:47883788-47883807 MS.gene021324:intron 45.0%
AGTCAAGGACACCGTTAACT+GGG - chr6.1:47883590-47883609 None:intergenic 45.0%
ATCTTTCATTTACAGGGGCC+AGG - chr6.1:47883901-47883920 None:intergenic 45.0%
CAAGTCATTGTAGTCGTCGT+CGG - chr6.1:47881728-47881747 None:intergenic 45.0%
GACAACAATGATGAGATGGC+TGG + chr6.1:47883018-47883037 MS.gene021324:CDS 45.0%
GACTCATGGAAGAGGCAAAT+TGG + chr6.1:47884534-47884553 MS.gene021324:CDS 45.0%
GCCTATTGAAACCGAGGAAA+AGG + chr6.1:47883044-47883063 MS.gene021324:CDS 45.0%
GTGGCCTTCATATGGAATTG+GGG + chr6.1:47883510-47883529 MS.gene021324:intron 45.0%
TACTACCAGTGTCAACGTGT+CGG - chr6.1:47882567-47882586 None:intergenic 45.0%
TCATGGAAGAGGCAAATTGG+TGG + chr6.1:47884537-47884556 MS.gene021324:CDS 45.0%
TCTTTCATTTACAGGGGCCA+GGG - chr6.1:47883900-47883919 None:intergenic 45.0%
TTCCATCAGGCAAGTAACGA+CGG - chr6.1:47884340-47884359 None:intergenic 45.0%
TTGTGGAAGACTCATGGAAG+AGG + chr6.1:47884526-47884545 MS.gene021324:CDS 45.0%
! TATGAGCGTGCACGGATTTT+GGG + chr6.1:47883120-47883139 MS.gene021324:CDS 45.0%
!! CTGTCATGGTTGAGTTGGAA+GGG + chr6.1:47883279-47883298 MS.gene021324:CDS 45.0%
!! TGAACTATGAAGCACCGACA+CGG + chr6.1:47882527-47882546 MS.gene021324:intron 45.0%
!! TGTCATGGTTGAGTTGGAAG+GGG + chr6.1:47883280-47883299 MS.gene021324:CDS 45.0%
!! TGTCGGTGTCGTGTTGATAT+CGG + chr6.1:47882627-47882646 MS.gene021324:intron 45.0%
!!! TTTTTTTTTTTTTTTAGTTT+TGG + chr6.1:47884394-47884413 MS.gene021324:intron 5.0%
AATCCGTGCACGCTCATACT+TGG - chr6.1:47883118-47883137 None:intergenic 50.0%
AGTTCATGTTTCCTCTGCCC+TGG + chr6.1:47883880-47883899 MS.gene021324:intron 50.0%
ATCCGTCGTTACTTGCCTGA+TGG + chr6.1:47884335-47884354 MS.gene021324:CDS 50.0%
CAAGTAACGACGGATCGTGA+AGG - chr6.1:47884330-47884349 None:intergenic 50.0%
CACCAACACCTCTGATTGTC+CGG - chr6.1:47882176-47882195 None:intergenic 50.0%
CCTTCCAACTCAACCATGAC+AGG - chr6.1:47883281-47883300 None:intergenic 50.0%
CGACGACGACTACAATGACT+TGG + chr6.1:47881726-47881745 MS.gene021324:CDS 50.0%
GTACCCGTGCTCTTCAAATC+AGG + chr6.1:47883142-47883161 MS.gene021324:CDS 50.0%
GTCAAGGACACCGTTAACTG+GGG - chr6.1:47883589-47883608 None:intergenic 50.0%
GTCGTTACTTGCCTGATGGA+AGG + chr6.1:47884339-47884358 MS.gene021324:CDS 50.0%
GTCTTTCGAGGCCTTTCTGT+TGG - chr6.1:47883081-47883100 None:intergenic 50.0%
GTGACCTTCTCCCCAGTTAA+CGG + chr6.1:47883576-47883595 MS.gene021324:intron 50.0%
TGACCAAGTATGAGCGTGCA+CGG + chr6.1:47883112-47883131 MS.gene021324:CDS 50.0%
TGCACCTGTCATGGTTGAGT+TGG + chr6.1:47883274-47883293 MS.gene021324:CDS 50.0%
TGGAGAGCCTATTGAAACCG+AGG + chr6.1:47883038-47883057 MS.gene021324:CDS 50.0%
TGTCAGTGTTGTGTCCGTGT+CGG - chr6.1:47882544-47882563 None:intergenic 50.0%
! GCACTGACACATCTGATCGA+AGG - chr6.1:47882682-47882701 None:intergenic 50.0%
! GTATGAGCGTGCACGGATTT+TGG + chr6.1:47883119-47883138 MS.gene021324:CDS 50.0%
! TAGACGTGTCGGTGCTTCAT+AGG - chr6.1:47882091-47882110 None:intergenic 50.0%
! TTGATAGGAAGGTGCAGAGG+TGG + chr6.1:47882981-47883000 MS.gene021324:intron 50.0%
!! CATGTGTTGGTGTTGGACAC+CGG + chr6.1:47882154-47882173 MS.gene021324:intron 50.0%
!! CCTGTCATGGTTGAGTTGGA+AGG + chr6.1:47883278-47883297 MS.gene021324:CDS 50.0%
!! TGGTTGATAGGAAGGTGCAG+AGG + chr6.1:47882978-47882997 MS.gene021324:intron 50.0%
GACACCGTTAACTGGGGAGA+AGG - chr6.1:47883583-47883602 None:intergenic 55.0%
GTTGGACACCGGACAATCAG+AGG + chr6.1:47882165-47882184 MS.gene021324:intron 55.0%
TGACACCGACACGTTGACAC+TGG + chr6.1:47882559-47882578 MS.gene021324:intron 55.0%
! CACCGGACAATCAGAGGTGT+TGG + chr6.1:47882171-47882190 MS.gene021324:intron 55.0%
! CATCTGATCGAAGGCGTGTC+TGG - chr6.1:47882673-47882692 None:intergenic 55.0%
!! AAGCACCGACACGTCTACAC+TGG + chr6.1:47882094-47882113 MS.gene021324:intron 55.0%
!! CAGAGGTGTTGGTGCTACAG+AGG + chr6.1:47882182-47882201 MS.gene021324:intron 55.0%
AGGGGAAACTGACCCGCTTG+AGG + chr6.1:47883298-47883317 MS.gene021324:CDS 60.0%
ATTTACAGGGGCCAGGGCAG+AGG - chr6.1:47883894-47883913 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 47881721 47884566 47881721 ID=MS.gene021324
chr6.1 mRNA 47881721 47884566 47881721 ID=MS.gene021324.t1;Parent=MS.gene021324
chr6.1 exon 47881721 47881755 47881721 ID=MS.gene021324.t1.exon1;Parent=MS.gene021324.t1
chr6.1 CDS 47881721 47881755 47881721 ID=cds.MS.gene021324.t1;Parent=MS.gene021324.t1
chr6.1 exon 47882863 47882896 47882863 ID=MS.gene021324.t1.exon2;Parent=MS.gene021324.t1
chr6.1 CDS 47882863 47882896 47882863 ID=cds.MS.gene021324.t1;Parent=MS.gene021324.t1
chr6.1 exon 47882988 47883163 47882988 ID=MS.gene021324.t1.exon3;Parent=MS.gene021324.t1
chr6.1 CDS 47882988 47883163 47882988 ID=cds.MS.gene021324.t1;Parent=MS.gene021324.t1
chr6.1 exon 47883268 47883319 47883268 ID=MS.gene021324.t1.exon4;Parent=MS.gene021324.t1
chr6.1 CDS 47883268 47883319 47883268 ID=cds.MS.gene021324.t1;Parent=MS.gene021324.t1
chr6.1 exon 47884293 47884360 47884293 ID=MS.gene021324.t1.exon5;Parent=MS.gene021324.t1
chr6.1 CDS 47884293 47884360 47884293 ID=cds.MS.gene021324.t1;Parent=MS.gene021324.t1
chr6.1 exon 47884497 47884566 47884497 ID=MS.gene021324.t1.exon6;Parent=MS.gene021324.t1
chr6.1 CDS 47884497 47884566 47884497 ID=cds.MS.gene021324.t1;Parent=MS.gene021324.t1
Gene Sequence

>MS.gene021324

ATGGCCGACGACGACTACAATGACTTGGACATCGGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTACCACACTCACCAAATTAGGGTTTTTCCCCAATTTAATTTTCATTTTTGAAACACCTTATTGATAATAATTAATTCCTGATATCGTTTTATTATTTTTGATTAATTGTAGCCACAAATGTCTTGTTTAGCCATGTTCATTTTTATGTTTTGTTTGTGAAAACCAAAGCAAAATGTAACCTTTTTGTTTTTTCTTCCTATATATTCATGTTTTTAAGCTTGTTTTGCATTATGGGTATGTTTGAATTGGCTTATTTGAGTTTATCTAATGGCATAAGCAGTTGTGACCTATGAAGCACCGACACGTCTACACTGGTAATAATATGAGTAAATGAATTATTTGAACATAATCACATGTGTTGGTGTTGGACACCGGACAATCAGAGGTGTTGGTGCTACAGAGGTTCTAAGACTTTTTGGAAGAACTTATGAAAATAGCTTATGACATGATAATAAGCTATTTTCAGTTTTTTTTTTTTTTTTTTTGTACGTTCTCTAGGACAGGTTATAGAAATAGCTTATACAAAAATAATATAAAATCATTTTATGTTTTGTTATAGAAATAACTTATACATAAGCATTTATCATGATAAAGGCTTATGTTATAAGCTGCTAATTAAACTGTTTAGCCAAACATGGTCTAAGTCCATATACATGTCTTTAAAGATTGAAGGTTGTCATGCGCTAAGTTTATTTCAAATTTACACTTAGAATGTAATTCACATATGAACTATGAAGCACCGACACGGACACAACACTGACACCGACACGTTGACACTGGTAGTAATTTGAAAAAAAAAATGACAGAATTGAATGTAATAACATGTGTCGGTGTCGTGTTGATATCGGACACAGACACGTGTCTGACACCAGACACGCCTTCGATCAGATGTGTCAGTGCTACAAAGCCTTTGAAAGAACAAATTTTTCCTAAAAAAGATCATACAGTTTAAAAGGAATGGAGGGAGTATGATTATGCAGTTGCCAGTTAATGAGATATGTGTTTTGTAGTATATTACTAGTGGAACATTTCTCTCATAACAAATTTGAATGGTGATGCAGATATGAAGATGAGCCAGTAGATCCTGAGATTGAAGTAAGGAATTCTATACACACCGACTAACACAAACATATATGAATATTAAGGAATACACCGTTGATGAATTTTTTAAATTATTGGTTGATAGGAAGGTGCAGAGGTGGATGCAGATGACAACGACAACAATGATGAGATGGCTGGAGAGCCTATTGAAACCGAGGAAAAGGAACAAGAAGAGCCAACAGAAAGGCCTCGAAAGACATCGAAATATATGACCAAGTATGAGCGTGCACGGATTTTGGGTACCCGTGCTCTTCAAATCAGGTATTTTTTTTTTAGTTTTGATCTTTGTGAAGTTAAAATATTGTTCTGGTCAATGATTCCTTGTAAATGTTTTAACATGATGTCTTGTCTTTTGGTTGATGAAGTATGAATGCACCTGTCATGGTTGAGTTGGAAGGGGAAACTGACCCGCTTGAGGTACGAGAAACTTTTCTTCTGTTTACTCATTTGATGTTTCATTTCACATAGTGTTGCTGCATTTGAGTATGTCTGAAGGGTTATTGAAAATTGTGCTTGCCTAACTTGATATGTTAGTATCTAATTTCTTTTGTTTTTTAACAAAAACTAGTATCTGATCTAATTTCAAAACATATGTCGGTATAGACTAGTGGCCTTCATATGGAATTGGGGAAAGATTTCTTTAAGACACTTCTAACTTTAATCACTCACTTTGGTGACCTTCTCCCCAGTTAACGGTGTCCTTGACTTGCTAACTATGGATGTGGAGATTTTATTTCTCTTTAGTTTCCTAGAAGGTACCTGGTCTATATTTCAAAATAAAAATGTACAAAATATACTGCTAAAGTGCTCATGTATGGGCTATTCGTACGAGATCCCTTCTTTCCATATTTTCATATTACAATAATAACAAATTTTAATATGTGAAGAGTGGTTCTCTTGTGAGATGGAGTTATATATTTTTTTTCTTCTTGCCTATAATTTGAATGTTTAGCTCATAGCAAAGTTTCATTCCTTATAGTTCATGTTTCCTCTGCCCTGGCCCCTGTAAATGAAAGATTTCAGGCTTTGGACATTAAAACCTAAACATTCATTTTGTGGTTCATTGAAGAATTGATGCTCTTTCTAATGTTGAAACTAATATAATGTTCATTGAAAAGAACTGGTTACTTCTATTAAGTTTTACCCGTTGACTTCAAAACATATGTATGCTTTTGTCATTAAATTTTGATTCTGATAAACCTTTGAATAATAAGATTATAAATATCTCCTTTGGATGGCCAATACCATATATCAATTCCAAATTGATTATTAATTGTTTTATATTGTTTCAAATTCATTAGTTTGCAAGGGATTTTTGTTCATGTATCACTTAACCATTTGATACATTTTGGACACAAATGTCTGATATCTTGTTCACTCAACTTCACAGATTGCCATGAAAGAGCTTCGAGAGAAAAAAATACCCTTCACGATCCGTCGTTACTTGCCTGATGGAAGGTAATTACAATCACTCTGCTTGATCCCTTTTTTTTTTTTTTTTTTTTTAGTTTTGGAAAGGGTTGAGTGGTATGCTAAGACTTAAGCTTAATTTTCCTTCATGTCATGCGTTTTCTGTTTTTGCAAAATTGTGCAGCTATGAAGATTGGGGAGTTGATGAATTGATTGTGGAAGACTCATGGAAGAGGCAAATTGGTGGTGATTGA
Protein sequence

>MS.gene021324.t1

MADDDYNDLDIGYEDEPVDPEIEEGAEVDADDNDNNDEMAGEPIETEEKEQEEPTERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELREKKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQIGGD