AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene38651


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38651.t1 MTR_0019s0160 97.222 144 4 0 1 144 1 144 5.60e-98 278
MS.gene38651.t1 MTR_7g092450 84.138 145 22 1 1 144 1 145 9.50e-73 214
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene38651.t1 AT5G51940 79.310 145 28 2 1 144 1 144 1.04e-72 214
MS.gene38651.t1 AT2G04630 79.310 145 28 2 1 144 1 144 9.51e-72 212

Find 45 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATGAGCGTGCACGGATTT+TGG 0.154400 6.2:+55795498 MS.gene38651:CDS
TTTCTCTCGAAGCTCTTTCA+TGG 0.342410 6.2:-55801714 None:intergenic
GACTCATGGAAGAGGCAAAT+TGG 0.371145 6.2:+55801948 MS.gene38651:CDS
ATCGTGCAGCTATGAAGATT+GGG 0.406847 6.2:+55801902 MS.gene38651:intron
GTCTTTCGAGGTCTTTCTGT+TGG 0.413105 6.2:-55795457 None:intergenic
GCCTATTGAAACCGAGGAAA+AGG 0.427074 6.2:+55795423 MS.gene38651:CDS
GAATTCCTTACTTCAATCTC+AGG 0.430246 6.2:-55795264 None:intergenic
AATCGTGCAGCTATGAAGAT+TGG 0.435283 6.2:+55801901 MS.gene38651:intron
GTACCCGCGCTCTTCAAATC+AGG 0.451117 6.2:+55795521 MS.gene38651:CDS
GGCAAATTGGTGGTGATTGA+TGG 0.457288 6.2:+55801961 MS.gene38651:CDS
ACTTCAATCTCAGGATCTAC+TGG 0.460752 6.2:-55795255 None:intergenic
ATGTATTTCGATGTCTTTCG+AGG 0.461953 6.2:-55795469 None:intergenic
GACTACAATGACTTGGACAT+CGG 0.488556 6.2:+55794332 MS.gene38651:CDS
CTCAGTAATTACCTTCCATC+AGG 0.490151 6.2:-55801767 None:intergenic
CAAGTAACGACGGATGGTAA+AGG 0.490956 6.2:-55801744 None:intergenic
CCTTCCAACTCAACCATGAC+AGG 0.504355 6.2:-55795656 None:intergenic
GGGAGTTGATGAATTGATTG+TGG 0.509393 6.2:+55801923 MS.gene38651:CDS
AAGTAACGACGGATGGTAAA+GGG 0.509534 6.2:-55801743 None:intergenic
ACTACAATGACTTGGACATC+GGG 0.528904 6.2:+55794333 MS.gene38651:CDS
CTGTCATGGTTGAGTTGGAA+GGG 0.541235 6.2:+55795657 MS.gene38651:CDS
CGACGACGACTACAATGACT+TGG 0.542431 6.2:+55794325 MS.gene38651:CDS
ATCCGTCGTTACTTGCCTGA+TGG 0.543002 6.2:+55801752 MS.gene38651:CDS
TGCACCTGTCATGGTTGAGT+TGG 0.544974 6.2:+55795652 MS.gene38651:CDS
TTACCTGATTTGAAGAGCGC+GGG 0.554923 6.2:-55795524 None:intergenic
AATTGATTGTGGAAGACTCA+TGG 0.564886 6.2:+55801934 MS.gene38651:CDS
GACAACAATGATGAGATGGC+TGG 0.565670 6.2:+55795397 MS.gene38651:CDS
AAAGTTTCTCGTACCTCAAG+CGG 0.565990 6.2:-55795689 None:intergenic
GTCGTTACTTGCCTGATGGA+AGG 0.583890 6.2:+55801756 MS.gene38651:CDS
TTGTGGAAGACTCATGGAAG+AGG 0.587346 6.2:+55801940 MS.gene38651:CDS
CCTGTCATGGTTGAGTTGGA+AGG 0.591673 6.2:+55795656 MS.gene38651:CDS
AAGTTTCTCGTACCTCAAGC+GGG 0.593900 6.2:-55795688 None:intergenic
CAAGTCATTGTAGTCGTCGT+CGG 0.596315 6.2:-55794324 None:intergenic
ATCAGGCAAGTAACGACGGA+TGG 0.598660 6.2:-55801750 None:intergenic
AGGGGAGACTGACCCGCTTG+AGG 0.598671 6.2:+55795676 MS.gene38651:CDS
ATTACCTGATTTGAAGAGCG+CGG 0.599611 6.2:-55795525 None:intergenic
AAGTATGAATGCACCTGTCA+TGG 0.600527 6.2:+55795643 MS.gene38651:intron
TTGATAGGAAGGTGCAGAGG+TGG 0.602482 6.2:+55795360 MS.gene38651:intron
TGACGAAGTATGAGCGTGCA+CGG 0.603590 6.2:+55795491 MS.gene38651:CDS
TGTCATGGTTGAGTTGGAAG+GGG 0.604272 6.2:+55795658 MS.gene38651:CDS
TCATGGAAGAGGCAAATTGG+TGG 0.616416 6.2:+55801951 MS.gene38651:CDS
CAACGACAACAATGATGAGA+TGG 0.626792 6.2:+55795393 MS.gene38651:CDS
TGGAGAGCCTATTGAAACCG+AGG 0.643087 6.2:+55795417 MS.gene38651:CDS
TTCCATCAGGCAAGTAACGA+CGG 0.645675 6.2:-55801754 None:intergenic
TCGTGCAGCTATGAAGATTG+GGG 0.646097 6.2:+55801903 MS.gene38651:intron
TGGTTGATAGGAAGGTGCAG+AGG 0.655672 6.2:+55795357 MS.gene38651:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr6.2 gene 55794320 55801980 55794320 ID=MS.gene38651
chr6.2 mRNA 55794320 55801980 55794320 ID=MS.gene38651.t1;Parent=MS.gene38651
chr6.2 exon 55794320 55794354 55794320 ID=MS.gene38651.t1.exon1;Parent=MS.gene38651.t1
chr6.2 CDS 55794320 55794354 55794320 ID=cds.MS.gene38651.t1;Parent=MS.gene38651.t1
chr6.2 exon 55795242 55795275 55795242 ID=MS.gene38651.t1.exon2;Parent=MS.gene38651.t1
chr6.2 CDS 55795242 55795275 55795242 ID=cds.MS.gene38651.t1;Parent=MS.gene38651.t1
chr6.2 exon 55795367 55795542 55795367 ID=MS.gene38651.t1.exon3;Parent=MS.gene38651.t1
chr6.2 CDS 55795367 55795542 55795367 ID=cds.MS.gene38651.t1;Parent=MS.gene38651.t1
chr6.2 exon 55795646 55795697 55795646 ID=MS.gene38651.t1.exon4;Parent=MS.gene38651.t1
chr6.2 CDS 55795646 55795697 55795646 ID=cds.MS.gene38651.t1;Parent=MS.gene38651.t1
chr6.2 exon 55801710 55801777 55801710 ID=MS.gene38651.t1.exon5;Parent=MS.gene38651.t1
chr6.2 CDS 55801710 55801777 55801710 ID=cds.MS.gene38651.t1;Parent=MS.gene38651.t1
chr6.2 exon 55801911 55801980 55801911 ID=MS.gene38651.t1.exon6;Parent=MS.gene38651.t1
chr6.2 CDS 55801911 55801980 55801911 ID=cds.MS.gene38651.t1;Parent=MS.gene38651.t1
Gene Sequence

>MS.gene38651

ATGGCCGACGACGACTACAATGACTTGGACATCGGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTACCACACTCACCAAATTAGGGTTTTTCCCCAATTTAATTTTCATTTTTGAAACACCTTATTGATAATATTTAATTCCTGATATCGTTTTATTATTTTTGATTAATTGTAGCCACAAATGTCTTGTTTAGCCATGTTCATTTTTATGTTTTGTTTGTGAATACCAAAGCAAAATGTAACCTTTTTGTTTTTTCTTCCTATATATTCATGTTTTTAAGCTTGTTTTGCATTATGGGTATGTTTGAATTGGCTTAGTTGAGTTTATCTAATGGCATAAGCAGTTGCGAGTTATGAAGCACCGACACAAGACAAGTCTACACCGGTAATAATATGAGTAAATGAATTATTTGAACATAAGTGTTTATCATGAAAAATGCTTATGTTATAAGCTGCTAGTTAAACTGTTTAGCCAAACATGGTCTAAGTCCATATACATGTCTTTAAAGATTGAAGGTTGTCATGCGCTAAGTTTATTTCAAATTTACACTTAGAATGTGATTGACATATGAACTATGAAGCACCGACACGGACATAACACTGACACACGTTGACACCGGTAGTAATTTGAAAAAATGACAGAATTGAATGTAATAACATGTATCGATGTTGTGTTGGTATTGGACACGAACACATGTCTGACATCGGACACGCCTTCGATCAAAAGTGTTAGTGCTATTGAGCATTTGAAAGAACAACTTTTTCCTAAAAGAGATCAGACAGTTTAAAAGGAATGGAGGGAGTACGATTATGTAGTTGCCAGTTTATGAGATGTGTTTTGTAGTATGATACTAGTGGAACATTTCTCTCATAACAAATTTGAATGGTGATGCAGATATGAAGATGAACCAGTAGATCCTGAGATTGAAGTAAGGAATTCTATACACACCGACTAACACAAACATATATGAATATTAAGGAATACACCGTTGATGAATTTTTTAAATTATTGGTTGATAGGAAGGTGCAGAGGTGGATGCAGATGACAACGACAACAATGATGAGATGGCTGGAGAGCCTATTGAAACCGAGGAAAAGGAACAAGAAGAGCCAACAGAAAGACCTCGAAAGACATCGAAATACATGACGAAGTATGAGCGTGCACGGATTTTGGGTACCCGCGCTCTTCAAATCAGGTAATTTTTTTTAGTTTTCATCTTTGTGAAGTTAAGATTTTGTTCTGGTGAATGATTCCTTGTAAATGTTTTAACATGATGTCTTGTCTTTTGGTTGATGAAGTATGAATGCACCTGTCATGGTTGAGTTGGAAGGGGAGACTGACCCGCTTGAGGTACGAGAAACTTTTCTTCTGTTTACTCATTTGATGTTTCATTTCACATAGTGTTGCTGCATTTGAGTATGTCTGAAGGGTTATTGAAAATTGTGCTTGCTGTTAGAATAATTAATCAAGTACTTGGTGGAGATATTGGAAAGTTGTGACTATTTAGTTTTAACTCCACTAGTCATTGTATTGATTGTATTGATTAATCTTCCTTTTTAATTAGGGGTTAACTAGGAGACTCCTACCTATATAAATGTACATTCTCACCACATAATATGATATAATAAACATATTTTCAGTTCTAATATGGTATCTAGAGCTTCTTGATCCAAAGCCATGTCTACTGCTACGTCTTCTCCTACTCCCTCTGATGCGCAACGCATAACTGCTGCAGCATCCAAAACCTTCAAACAAGTAGTTTCTGTTAAGCTTGATGATACGAACTACCTTCAATGGAAGCAACAAGTCAAAGGTGTTCTTCGCGGAACGAAGATGGTGAAATTTGTGATTTCACCTGAGATTCCACCGGTTTATCTCACAGATGCAGCGCGCGAAGCAGGAACAGAGAATCCTGCTTACACTGAATGGGAAGAACAAAATTCATTGCTCTGCACCTGGATTCTTTCAACGATTTCGCCTTCGCTACTTTCGCGATTCGTTCTCCTTCGCCACTCGTGGCAGGTTTGGGATGAGATTCATAGTTATTGCTTCACGCAAATGAAGACGCGTTCGCGTCAACTTCGATCTGAACTTAGATCCATTACGAAAGGTTCACGCACTGTTGCTGAATTCATTGCTCGAATTCGCGCAATTTCAGAGTCTCTTGCTTCAATTGGAGATCCAGTCTCTCACAGGGACCTGATTGAAGTTGTTCTTGAAGCACTTCCTGAAGAGTTTGACCCTATTGTTGCTAGTGTGAATGCGAAATCTGAGGTTGTTTCTTTAGATGAACTTGAATCTCAGCTTCTCACACAAGAATCTAGAAATGAGAAGTTCAAGAAAGCTGCTATCATTGAACCTGTTTCAGTTAATCTCACTGAAACTGCAAATTCAGAATCTCAATCTCATAGTCCTAATTCTCAAAACCACAATTATACTGATGGTACTGGAAACAATCAGTTTCCTAACTCTAACCCTAATTTTGGAGGAAGAAATGGCCAGTTCAGAGGACGTGGTGGCCGTTTTGGTGGAAGATTCAGAGGACGTGGTGGCCGTTTTGGTGGAAGATCCAATGTTCAATGCCAAATCTGTTCAAAAACAGGTCATGATGCAAGCTATTGTCGCTACCGTTTCTCTGCCCCACAGTATGATTACTACAGTCCCTATGGCTCACCAGGAGGCTACGGTGCACCTCCAAATGTATGGATGCAGAACATGTCACGTCCTCAGCATTCTGGACAGTTTCTTAGGCCTCCTACACAGGCTGGGAATCAGAGAGGTCAAGCTCCCCAGGCCTTCTTAACTGGCTCAGATCCACACAATTCATTCAACAATGCCTGGTACCCTGACTCAGGTGCTACTCATCATGTCACCCCTGATGCATCCAACCTCATGGATTCCACGTCTCTTTCAGGTTCTGATCAGGTCCATATTGGAAATGGACAAGGTTTGGCTATTACCTCTATTGGTTCCTTACAATTTACTTCTCCTTTACATCCTCAAACTACTTTTAAATTGAATAATCTCCTTCTTGTTCCTTCTATAACCAAAAATCTTGTTAGTGTGAGTCAGTTTGCTAAAGATAACAATGTTTACTTTGAGTTTCATCCTAATCACTGTTTTGTCAAATCTCAGGATTCTTCTAAGGTGCTTTTAAGAGGTATTCTAGGACATGATGGTCTCTATCAGTTTGAGCACACCAACTCATTCAAGACCACTGCTCCTGTCTCTCAAAATTCTAGTGTCAACACTGTTTGCAATAAAGTTCCAGCACAAACTGACAACTCTGCCTCTTTTCATTTAGGTCCCTCAACTGGTTTCAATTTCAATAATTTTCAATGTAATAATGTTGAACATTTACCTAGTAGTTCAACATCTAGTTCTACTCAGTCTTTTCCTTCCATGTATGGTATCTGGCATAGCAGACTTGGACATCCTCATCATGAGGTGCTCCAAAGTATTATCAAACTTTGTAATATACAATTACCAAATAAAAGCTTGTCAGATTTTTGTACTGCTTGTTGTCTTGGTAAGGTTCATAGACTGCCATCTTTTGCATCTCAAATGACATATACTAAACCTCTTGAACTAATTTTCTGTGATCTTTGGGGACCTGCACCAGTTGAATCCTCCTGTGGATATACCTATTTCCTTACTTGTGTGGATGCTTATTCTAGATACACATGGATATATCCTCTGAAACTCAAATCTCACACACTTTCTACATTTCAGAATTTTAAAACCATGATTGAATTGCAGTTAAATCACAAAATTATTTCTGTCCAAACTGATGGAGGTGGTGAGTTTTTACCTTTCACAAAATATCTCAATAGCCTTGGCATCACTCACAGATTTACTTGTCCACACACTCACCATCAAAATGGCTCAGTTGAAAGGAAACATAGACATATTGTTGAAACTGGTCTCACTCTTTTATCTCATGCACAAATGCCATTAAAGTTTTGGGACCATGCCTTTTTAACTGCAACTTACCTTATCAACAGGTTACCTACACCCGTTTTAGCAAATAAATCACCCTTTTTCTTACTTAACCTTCAATTTCCAGACTATAAATTCCTTAAAAGCTTTGGTTGTGCATGTTTTCCCTTTTTGAGACCCTATAACTCTCATAAGTTTGATTTTCATTCAAAGGAGTGTGTTTTCTTGGGATATTCCAACAATCACAAAGGATATAAATGTTTAGATGCTTCAGGTAGAATTTTTATATCCAAAGATGTTGTGTTTAATGAGGTAAAATTCCCTTATCTTGACTTGTTTAAATCTCAGAAAGTGTGTTCTGTTTTACCAGATGGTCCCACTTTATCCACTTTTCTTCCCACTCCTGTCTCAACAACCTTTACTGTAAACTCACCTACTCCCCAAAATTCTCATTCTGAGTCTGTTCCTACTACTCCCATATCAAACACCTCTCAGACTCCATCTATTAGTTCTCATCACTCTGAGTCCTCACACAGAAATAATGTTGTCCTAAATCCCACACCCATCACCATTCTATCTCCCTCTCCATCTCAAAATTCCTCACCTGAGTCATCTGCTAGTGTTACTAGCTCTCAGTCTACAAATTCTGAGTCTCCTCCTCCTGTTCCTCACAGAATTCATCCTCAAAACCGTCACTCAATGAGAACGAGAGGTAAACATGGAATTGTGCAGCCTAGAATTAATCCTACACTCCTTTTGACTCATGTTGAGCCCACTACTTACAAAACAGCTCTTCAGGATCCTAAGTGGCATTTAGCAATGCAAGAAGAATATAATGCTTTGCTTCATAATCAGACATGGTCTTTAGTACCTCTTCCTGCAAACAGACATGCCATTGGATGTAAATGGGTATTCAGGGTAAAAGAAAATCCAGATGGCACTGTAAACAAGTACAAGGCACGTTTAGTGGCTAAGGGTTTTCATCAACAAGTAGGTTTTGACTACAATGAGACTTTTTCCCCTGTAGTCAAACCCGTTACAGTGAGGACAGTTCTGACACTTGCAGTTACTTATAATTGGACTCTTCAGCAGTTGGATGTGAACAATGCCTTCCTAAATGGAGTGCTAACTGAAGAAGTCTACATGGTGCAGCCTCCTGGCTTTGAATCTTCTGACAAGAGCCTTGTATGCAAACTACACAAGGCTCTCTATGGGTTAAAACAGGCTCCCAGAGCATGGTTTGAGAGATTGAAATCATCTTTACTTAGCTTTGGTTTCAAGTCAAGCAGATGTGATCCTTCTTTGTTTACTTTGCACACTCAAGCTCATTGCATTTTTATATTGGTTTATGTTGATGATATTATCATCACTGGAAACTCAAAACTGGCTATTCAGAATCTAGTTCATCAGCTCAATTCTGAGTTCTCCCTTAAAGATTTGGGTATACTAGATTATTTTCTTGGCATAGAGGTGCATCACTCACCATCTGGCTCTTTACTTCTCTCTCAAACCAAATATATCAAGGACCTTCTTCAGAAAGCTAACATGATTAATGCTAATAGCATGCCCTCACCAATGGCATCTAGTACAAAATTGTCTAAATTTGGTTCAAGTACGGTCTCAGATCCTACATTTTTCAGGTCAATTGTTGGTGCATTGCAGTATGCAACCATAACAAGACCTGAAATATCCTACTCTGTGAACAAAGTTTGCCAGTTCTTATCAAATCCCCTTGAAGATCACTGGAAGGCAGTCAAGAGGATACTTAGATATCTGCAGGGTACTTTACACCATGGGTTAATGCTTACACCTGCCAGCTCCACTGAACCTATTGCAATCACTGGCTTTTGTGATGCTGACTGGGCTTCAGATCCTGATGACAGAAGAAGCACATCGGGAGCCTGCATATTTCTGGGTCCCAATCTAGTTTCCTGGTGGGCAAGGAAACAGACCCTTGTAGCTAGATCTAGTGCAGAGGCTGAATATAGAAGCCTTGCACAAGCTTCTGCTGAGATTATTTGGATCCAGTCTCTTCTCAATGAATTGCAAATTAAGAGTAAAATTCCTCATGTCTATTGTGATAATCTCAGTGCAGTTTCACTTGCTCACAACCCAGTCCTGCACTCAAGAACCAAGCACATGGAATTGGATATTTTCTTTGTGAGAGAAAAGGTTATAGGGAAGGAACTGAATGTCTCACATGTGCCTGCTCAAGACCAGTGGGCAGATGTCTTGACTAAGCCTCTGTCCACTGCCAGATTCCTTTATCTTAGAGACAAACTGAGGGTTTGTGACACCCTCGGTTTGAAGGGGGACTGTTAGAATAATTAATCAAGTACTTAGTGGAGATATTGGAAAGTTGTGACTATTTAGTTTTAACTCCACTAGTCATTGTATTGATTGTATTGATTAATCTTCCTTATTAATTAGGGGTTAACTAGGAGACTCCTACCTATATAAATGTACATTCTCACCACATAATATGATATAATAAACATATTTTCAGTTCTAATACTTGCCTAACTTGTTATGCTAGTATCTAATTTCTTTTGATTTTTTAACAAAAACTAGTATCTGATCTAATTTCAAAACATATGTCGGTATAGACCAGTGGTCTTCATATGGAATGGGGGAAAGATTTCTCTAAAGACACTCCCTAACTTTGAATTTGATCATTCACTTTGGTGACCCTCCTTCCTATTTAATGGAGTCCTTGACTCTAACTATGGCTGTGGAGATTTTATTTCTCTTTGTTTCTTATAAGTTACCCGATTCATATTTCAAAATAAAAATATACAAATATACTGCTAATGTGCTAATGTATGGGCTATTCGTATGAAATCCCTTCTTTCCATATTTTCATATTACAATAATAACATCTTTTAATATGGGAAGGCTGATTTTCTTGTGAGGCAGGGTTGTCTTTAAATCAGGTGTTTTATCATTCTCCTATTCTTGCGTATAATTTGTATGTTTAACTCATAGCAAAGTTTCACTGTGTATAGTTCATGTTTCCTTGGCCCTGGCCCCTGTAAATGAAAATGTTCCAGGCTTTGGACATTAAAACTTAAACATTCACTTTGTGGATCATTGAAGGATTGATGCTCTTTCTAATGTTGAAACTTAAAAGATTATCATGTTGATCGAAAAGAACTGGTTACTTCTATTAAGTTTTGTCCATTGACTTCAAAACATATTTATACTTTTGTCATTGAATGTTGATTATGGTAAACCTTTGAATAATAAGATTGTAAATATCTCCTTTGGATGGCCAATACCATATATCAATTCCAAATTGATTATTAATTGTTTTATATAGTTTCAAATTCATTAGTTTGCATGGGCTTTTTGTTCATGTATCACTTAACCGTTTGATACATTTTGGACACAAATGTCTGATATCTTGTTCACTCAACTTTACAGATTGCCATGAAAGAGCTTCGAGAGAAAAAGATACCCTTTACCATCCGTCGTTACTTGCCTGATGGAAGGTAATTACTGAGCTTGATTCCTTTTTCTTTCTCTTTTTTTTTTTTAGTTTTGGAAAGAGGTGAGAGGTATGTTAGGACTTAAGCTTAGTTTTCCTTCTTGTCATGCGTTTTCTGTTTTTGCAAAATCGTGCAGCTATGAAGATTGGGGAGTTGATGAATTGATTGTGGAAGACTCATGGAAGAGGCAAATTGGTGGTGATTGA

Protein sequence

>MS.gene38651.t1

MADDDYNDLDIGYEDEPVDPEIEEGAEVDADDNDNNDEMAGEPIETEEKEQEEPTERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELREKKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQIGGD