Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38651.t1 | XP_013443358.1 | 93.1 | 144 | 10 | 0 | 1 | 144 | 1 | 144 | 1.60E-56 | 228.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38651.t1 | Q9FJ98 | 73.1 | 145 | 37 | 2 | 1 | 144 | 1 | 144 | 2.1e-52 | 206.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38651.t1 | A0A072TKL5 | 93.1 | 144 | 10 | 0 | 1 | 144 | 1 | 144 | 1.2e-56 | 228.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056170 | MS.gene38651 | 0.818562 | 1.84E-52 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38651.t1 | MTR_0019s0160 | 97.222 | 144 | 4 | 0 | 1 | 144 | 1 | 144 | 5.60e-98 | 278 |
MS.gene38651.t1 | MTR_7g092450 | 84.138 | 145 | 22 | 1 | 1 | 144 | 1 | 145 | 9.50e-73 | 214 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene38651.t1 | AT5G51940 | 79.310 | 145 | 28 | 2 | 1 | 144 | 1 | 144 | 1.04e-72 | 214 |
MS.gene38651.t1 | AT2G04630 | 79.310 | 145 | 28 | 2 | 1 | 144 | 1 | 144 | 9.51e-72 | 212 |
Find 45 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTATGAGCGTGCACGGATTT+TGG | 0.154400 | 6.2:+55795498 | MS.gene38651:CDS |
TTTCTCTCGAAGCTCTTTCA+TGG | 0.342410 | 6.2:-55801714 | None:intergenic |
GACTCATGGAAGAGGCAAAT+TGG | 0.371145 | 6.2:+55801948 | MS.gene38651:CDS |
ATCGTGCAGCTATGAAGATT+GGG | 0.406847 | 6.2:+55801902 | MS.gene38651:intron |
GTCTTTCGAGGTCTTTCTGT+TGG | 0.413105 | 6.2:-55795457 | None:intergenic |
GCCTATTGAAACCGAGGAAA+AGG | 0.427074 | 6.2:+55795423 | MS.gene38651:CDS |
GAATTCCTTACTTCAATCTC+AGG | 0.430246 | 6.2:-55795264 | None:intergenic |
AATCGTGCAGCTATGAAGAT+TGG | 0.435283 | 6.2:+55801901 | MS.gene38651:intron |
GTACCCGCGCTCTTCAAATC+AGG | 0.451117 | 6.2:+55795521 | MS.gene38651:CDS |
GGCAAATTGGTGGTGATTGA+TGG | 0.457288 | 6.2:+55801961 | MS.gene38651:CDS |
ACTTCAATCTCAGGATCTAC+TGG | 0.460752 | 6.2:-55795255 | None:intergenic |
ATGTATTTCGATGTCTTTCG+AGG | 0.461953 | 6.2:-55795469 | None:intergenic |
GACTACAATGACTTGGACAT+CGG | 0.488556 | 6.2:+55794332 | MS.gene38651:CDS |
CTCAGTAATTACCTTCCATC+AGG | 0.490151 | 6.2:-55801767 | None:intergenic |
CAAGTAACGACGGATGGTAA+AGG | 0.490956 | 6.2:-55801744 | None:intergenic |
CCTTCCAACTCAACCATGAC+AGG | 0.504355 | 6.2:-55795656 | None:intergenic |
GGGAGTTGATGAATTGATTG+TGG | 0.509393 | 6.2:+55801923 | MS.gene38651:CDS |
AAGTAACGACGGATGGTAAA+GGG | 0.509534 | 6.2:-55801743 | None:intergenic |
ACTACAATGACTTGGACATC+GGG | 0.528904 | 6.2:+55794333 | MS.gene38651:CDS |
CTGTCATGGTTGAGTTGGAA+GGG | 0.541235 | 6.2:+55795657 | MS.gene38651:CDS |
CGACGACGACTACAATGACT+TGG | 0.542431 | 6.2:+55794325 | MS.gene38651:CDS |
ATCCGTCGTTACTTGCCTGA+TGG | 0.543002 | 6.2:+55801752 | MS.gene38651:CDS |
TGCACCTGTCATGGTTGAGT+TGG | 0.544974 | 6.2:+55795652 | MS.gene38651:CDS |
TTACCTGATTTGAAGAGCGC+GGG | 0.554923 | 6.2:-55795524 | None:intergenic |
AATTGATTGTGGAAGACTCA+TGG | 0.564886 | 6.2:+55801934 | MS.gene38651:CDS |
GACAACAATGATGAGATGGC+TGG | 0.565670 | 6.2:+55795397 | MS.gene38651:CDS |
AAAGTTTCTCGTACCTCAAG+CGG | 0.565990 | 6.2:-55795689 | None:intergenic |
GTCGTTACTTGCCTGATGGA+AGG | 0.583890 | 6.2:+55801756 | MS.gene38651:CDS |
TTGTGGAAGACTCATGGAAG+AGG | 0.587346 | 6.2:+55801940 | MS.gene38651:CDS |
CCTGTCATGGTTGAGTTGGA+AGG | 0.591673 | 6.2:+55795656 | MS.gene38651:CDS |
AAGTTTCTCGTACCTCAAGC+GGG | 0.593900 | 6.2:-55795688 | None:intergenic |
CAAGTCATTGTAGTCGTCGT+CGG | 0.596315 | 6.2:-55794324 | None:intergenic |
ATCAGGCAAGTAACGACGGA+TGG | 0.598660 | 6.2:-55801750 | None:intergenic |
AGGGGAGACTGACCCGCTTG+AGG | 0.598671 | 6.2:+55795676 | MS.gene38651:CDS |
ATTACCTGATTTGAAGAGCG+CGG | 0.599611 | 6.2:-55795525 | None:intergenic |
AAGTATGAATGCACCTGTCA+TGG | 0.600527 | 6.2:+55795643 | MS.gene38651:intron |
TTGATAGGAAGGTGCAGAGG+TGG | 0.602482 | 6.2:+55795360 | MS.gene38651:intron |
TGACGAAGTATGAGCGTGCA+CGG | 0.603590 | 6.2:+55795491 | MS.gene38651:CDS |
TGTCATGGTTGAGTTGGAAG+GGG | 0.604272 | 6.2:+55795658 | MS.gene38651:CDS |
TCATGGAAGAGGCAAATTGG+TGG | 0.616416 | 6.2:+55801951 | MS.gene38651:CDS |
CAACGACAACAATGATGAGA+TGG | 0.626792 | 6.2:+55795393 | MS.gene38651:CDS |
TGGAGAGCCTATTGAAACCG+AGG | 0.643087 | 6.2:+55795417 | MS.gene38651:CDS |
TTCCATCAGGCAAGTAACGA+CGG | 0.645675 | 6.2:-55801754 | None:intergenic |
TCGTGCAGCTATGAAGATTG+GGG | 0.646097 | 6.2:+55801903 | MS.gene38651:intron |
TGGTTGATAGGAAGGTGCAG+AGG | 0.655672 | 6.2:+55795357 | MS.gene38651:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 55794320 | 55801980 | 55794320 | ID=MS.gene38651 |
chr6.2 | mRNA | 55794320 | 55801980 | 55794320 | ID=MS.gene38651.t1;Parent=MS.gene38651 |
chr6.2 | exon | 55794320 | 55794354 | 55794320 | ID=MS.gene38651.t1.exon1;Parent=MS.gene38651.t1 |
chr6.2 | CDS | 55794320 | 55794354 | 55794320 | ID=cds.MS.gene38651.t1;Parent=MS.gene38651.t1 |
chr6.2 | exon | 55795242 | 55795275 | 55795242 | ID=MS.gene38651.t1.exon2;Parent=MS.gene38651.t1 |
chr6.2 | CDS | 55795242 | 55795275 | 55795242 | ID=cds.MS.gene38651.t1;Parent=MS.gene38651.t1 |
chr6.2 | exon | 55795367 | 55795542 | 55795367 | ID=MS.gene38651.t1.exon3;Parent=MS.gene38651.t1 |
chr6.2 | CDS | 55795367 | 55795542 | 55795367 | ID=cds.MS.gene38651.t1;Parent=MS.gene38651.t1 |
chr6.2 | exon | 55795646 | 55795697 | 55795646 | ID=MS.gene38651.t1.exon4;Parent=MS.gene38651.t1 |
chr6.2 | CDS | 55795646 | 55795697 | 55795646 | ID=cds.MS.gene38651.t1;Parent=MS.gene38651.t1 |
chr6.2 | exon | 55801710 | 55801777 | 55801710 | ID=MS.gene38651.t1.exon5;Parent=MS.gene38651.t1 |
chr6.2 | CDS | 55801710 | 55801777 | 55801710 | ID=cds.MS.gene38651.t1;Parent=MS.gene38651.t1 |
chr6.2 | exon | 55801911 | 55801980 | 55801911 | ID=MS.gene38651.t1.exon6;Parent=MS.gene38651.t1 |
chr6.2 | CDS | 55801911 | 55801980 | 55801911 | ID=cds.MS.gene38651.t1;Parent=MS.gene38651.t1 |
Gene Sequence |
Protein sequence |