Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92623.t1 | XP_013443358.1 | 93.1 | 144 | 10 | 0 | 1 | 144 | 1 | 144 | 1.60E-56 | 228.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92623.t1 | Q9FJ98 | 73.1 | 145 | 37 | 2 | 1 | 144 | 1 | 144 | 2.1e-52 | 206.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92623.t1 | A0A072TKL5 | 93.1 | 144 | 10 | 0 | 1 | 144 | 1 | 144 | 1.2e-56 | 228.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056170 | MS.gene92623 | 0.809605 | 1.74E-50 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92623.t1 | MTR_0019s0160 | 97.222 | 144 | 4 | 0 | 1 | 144 | 1 | 144 | 5.60e-98 | 278 |
MS.gene92623.t1 | MTR_7g092450 | 84.138 | 145 | 22 | 1 | 1 | 144 | 1 | 145 | 9.50e-73 | 214 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92623.t1 | AT5G51940 | 79.310 | 145 | 28 | 2 | 1 | 144 | 1 | 144 | 1.04e-72 | 214 |
MS.gene92623.t1 | AT2G04630 | 79.310 | 145 | 28 | 2 | 1 | 144 | 1 | 144 | 9.51e-72 | 212 |
Find 45 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTATGAGCGTGCACGGATTT+TGG | 0.154400 | 6.4:+34721684 | MS.gene92623:CDS |
TTTCTCTCGAAGCTCTTTCA+TGG | 0.342410 | 6.4:-34723324 | None:intergenic |
GACTCATGGAAGAGGCAAAT+TGG | 0.371145 | 6.4:+34723547 | MS.gene92623:CDS |
GTCTTTCGAGGTCTTTCTGT+TGG | 0.413105 | 6.4:-34721643 | None:intergenic |
GCCTATTGAAACCGAGGAAA+AGG | 0.427074 | 6.4:+34721609 | MS.gene92623:CDS |
GAATTCCTTACTTCAATCTC+AGG | 0.430246 | 6.4:-34721450 | None:intergenic |
AATTGTGCAGCTATGAAGAT+TGG | 0.435283 | 6.4:+34723500 | MS.gene92623:intron |
ATTGTGCAGCTATGAAGATT+GGG | 0.436731 | 6.4:+34723501 | MS.gene92623:intron |
GTACCCGTGCTCTTCAAATC+AGG | 0.449097 | 6.4:+34721707 | MS.gene92623:CDS |
GGCAAATTGGTGGTGATTGA+TGG | 0.457288 | 6.4:+34723560 | MS.gene92623:CDS |
ATGTATTTCGATGTCTTTCG+AGG | 0.461953 | 6.4:-34721655 | None:intergenic |
GACTATAATGACTTGGACAT+CGG | 0.469104 | 6.4:+34720298 | MS.gene92623:CDS |
ACTTCAATCTCAGGATCTAC+TGG | 0.475450 | 6.4:-34721441 | None:intergenic |
CAAGTAACGACGGATGGTAA+AGG | 0.490956 | 6.4:-34723354 | None:intergenic |
CACAGTAATTACCTTCCATC+AGG | 0.492790 | 6.4:-34723377 | None:intergenic |
CCTTCCAACTCAACCATGAC+AGG | 0.504355 | 6.4:-34721849 | None:intergenic |
GGGAGTTGATGAATTGATTG+TGG | 0.509393 | 6.4:+34723522 | MS.gene92623:CDS |
AAGTAACGACGGATGGTAAA+GGG | 0.509534 | 6.4:-34723353 | None:intergenic |
ACTATAATGACTTGGACATC+GGG | 0.516979 | 6.4:+34720299 | MS.gene92623:CDS |
CTGTCATGGTTGAGTTGGAA+GGG | 0.541235 | 6.4:+34721850 | MS.gene92623:CDS |
ATCCGTCGTTACTTGCCTGA+TGG | 0.543002 | 6.4:+34723362 | MS.gene92623:CDS |
AAAGGTTCTCGTACCTCAAG+TGG | 0.543796 | 6.4:-34721882 | None:intergenic |
TGCACCTGTCATGGTTGAGT+TGG | 0.544974 | 6.4:+34721845 | MS.gene92623:CDS |
CGACGACGACTATAATGACT+TGG | 0.558668 | 6.4:+34720291 | MS.gene92623:CDS |
AATTGATTGTGGAAGACTCA+TGG | 0.564886 | 6.4:+34723533 | MS.gene92623:CDS |
GACAACAATGATGAGATGGC+TGG | 0.565670 | 6.4:+34721583 | MS.gene92623:CDS |
AATACCTGATTTGAAGAGCA+CGG | 0.568038 | 6.4:-34721711 | None:intergenic |
ATACCTGATTTGAAGAGCAC+GGG | 0.578359 | 6.4:-34721710 | None:intergenic |
GTCGTTACTTGCCTGATGGA+AGG | 0.583890 | 6.4:+34723366 | MS.gene92623:CDS |
TTGTGGAAGACTCATGGAAG+AGG | 0.587346 | 6.4:+34723539 | MS.gene92623:CDS |
CCTGTCATGGTTGAGTTGGA+AGG | 0.591673 | 6.4:+34721849 | MS.gene92623:CDS |
ATCAGGCAAGTAACGACGGA+TGG | 0.598660 | 6.4:-34723360 | None:intergenic |
AAGTATGAATGCACCTGTCA+TGG | 0.600527 | 6.4:+34721836 | MS.gene92623:intron |
TTGATAGGAAGGTGCAGAGG+TGG | 0.602482 | 6.4:+34721546 | MS.gene92623:intron |
TGACGAAGTATGAGCGTGCA+CGG | 0.603590 | 6.4:+34721677 | MS.gene92623:CDS |
TGTCATGGTTGAGTTGGAAG+GGG | 0.604272 | 6.4:+34721851 | MS.gene92623:CDS |
TCATGGAAGAGGCAAATTGG+TGG | 0.616416 | 6.4:+34723550 | MS.gene92623:CDS |
CAACGACAACAATGATGAGA+TGG | 0.626792 | 6.4:+34721579 | MS.gene92623:CDS |
TGGAGAGCCTATTGAAACCG+AGG | 0.643087 | 6.4:+34721603 | MS.gene92623:CDS |
AGGGGAGACTGACCCACTTG+AGG | 0.643885 | 6.4:+34721869 | MS.gene92623:CDS |
CAAGTCATTATAGTCGTCGT+CGG | 0.645335 | 6.4:-34720290 | None:intergenic |
TTCCATCAGGCAAGTAACGA+CGG | 0.645675 | 6.4:-34723364 | None:intergenic |
TTGTGCAGCTATGAAGATTG+GGG | 0.646097 | 6.4:+34723502 | MS.gene92623:intron |
TGGTTGATAGGAAGGTGCAG+AGG | 0.655672 | 6.4:+34721543 | MS.gene92623:intron |
AAGGTTCTCGTACCTCAAGT+GGG | 0.679566 | 6.4:-34721881 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAAAAATAATAAAAAATATC+AGG | - | chr6.4:34720436-34720455 | None:intergenic | 10.0% |
!! | TTAAAAAATGAAAATTGAAT+TGG | - | chr6.4:34720403-34720422 | None:intergenic | 10.0% |
!!! | AAAATTTGTTATTATTGTAA+GGG | - | chr6.4:34722578-34722597 | None:intergenic | 10.0% |
!!! | AAAATTTTACAAAGAAAATT+AGG | - | chr6.4:34723103-34723122 | None:intergenic | 10.0% |
!!! | ATATTTTCATATTACAATAA+GGG | + | chr6.4:34722384-34722403 | MS.gene92623:intron | 10.0% |
!!! | TAAAATTTGTTATTATTGTA+AGG | - | chr6.4:34722579-34722598 | None:intergenic | 10.0% |
!!! | TGATGAATTTTTTAAATTAT+TGG | + | chr6.4:34721523-34721542 | MS.gene92623:intron | 10.0% |
!! | AATAGGAAATAAAAACAAAA+AGG | - | chr6.4:34720536-34720555 | None:intergenic | 15.0% |
!! | ATTAGCAGTAAAAAAAAAAA+GGG | - | chr6.4:34722334-34722353 | None:intergenic | 15.0% |
!! | CTTAAAAACATGAATATAAT+AGG | - | chr6.4:34720553-34720572 | None:intergenic | 15.0% |
!! | CTTAATATTCATATATGTTT+GGG | - | chr6.4:34721492-34721511 | None:intergenic | 15.0% |
!! | CTTATTGTAATATGAAAATA+TGG | - | chr6.4:34722385-34722404 | None:intergenic | 15.0% |
!! | TCAAATATCATTTATCTATA+TGG | - | chr6.4:34722995-34723014 | None:intergenic | 15.0% |
!! | TTTACAATCTTATTATTCAA+AGG | - | chr6.4:34722950-34722969 | None:intergenic | 15.0% |
!!! | CATATTTTCATATTACAATA+AGG | + | chr6.4:34722383-34722402 | MS.gene92623:intron | 15.0% |
!!! | TTTTTAAATTATTGGTTGAT+AGG | + | chr6.4:34721531-34721550 | MS.gene92623:intron | 15.0% |
!!! | TTTTTTTTTCAAATTACTAC+CGG | - | chr6.4:34721150-34721169 | None:intergenic | 15.0% |
!! | AACATGTTAAAACATTTACA+GGG | - | chr6.4:34721796-34721815 | None:intergenic | 20.0% |
!! | AGCTAAACATACAAAATTAT+AGG | - | chr6.4:34722675-34722694 | None:intergenic | 20.0% |
!! | ATATACAAATATACACCAAA+TGG | + | chr6.4:34722256-34722275 | MS.gene92623:intron | 20.0% |
!! | ATCATTTATCTATATGGTAT+TGG | - | chr6.4:34722989-34723008 | None:intergenic | 20.0% |
!! | CAAAGCGAAAAAAAAAAAAA+AGG | - | chr6.4:34723410-34723429 | None:intergenic | 20.0% |
!! | CATTAGCAGTAAAAAAAAAA+AGG | - | chr6.4:34722335-34722354 | None:intergenic | 20.0% |
!! | CCAAACATATATGAATATTA+AGG | + | chr6.4:34721490-34721509 | MS.gene92623:intron | 20.0% |
!! | CCTTAATATTCATATATGTT+TGG | - | chr6.4:34721493-34721512 | None:intergenic | 20.0% |
!! | TCTAATTTCAAAACATATGT+CGG | + | chr6.4:34722050-34722069 | MS.gene92623:intron | 20.0% |
!! | TTACAAAGAAAATTAGGTAT+TGG | - | chr6.4:34723097-34723116 | None:intergenic | 20.0% |
!!! | CTTTTTTTTTTTTTTCGCTT+TGG | + | chr6.4:34723408-34723427 | MS.gene92623:intron | 20.0% |
!!! | TAAATATGTTTTGAAGTCAA+CGG | - | chr6.4:34722895-34722914 | None:intergenic | 20.0% |
!!! | TAACAAATTTTAATATGGGA+AGG | + | chr6.4:34722587-34722606 | MS.gene92623:intron | 20.0% |
!!! | TACATGTCTTTAAAGATTTA+AGG | + | chr6.4:34721022-34721041 | MS.gene92623:intron | 20.0% |
!!! | TTTATTTTGAAATATGGATC+AGG | - | chr6.4:34722235-34722254 | None:intergenic | 20.0% |
!!! | TTTTTTTACTGCTAATGTAT+GGG | + | chr6.4:34722338-34722357 | MS.gene92623:intron | 20.0% |
!!! | TTTTTTTTACTGCTAATGTA+TGG | + | chr6.4:34722337-34722356 | MS.gene92623:intron | 20.0% |
! | AAAACACATATCTCATTAAC+TGG | - | chr6.4:34721353-34721372 | None:intergenic | 25.0% |
! | AAAAGATCAGACAGTTTAAA+AGG | + | chr6.4:34721300-34721319 | MS.gene92623:intron | 25.0% |
! | AAACTTAAACATTTACTTCG+TGG | + | chr6.4:34722778-34722797 | MS.gene92623:intron | 25.0% |
! | AAATGAGTTAACAGAAGAAA+AGG | - | chr6.4:34721903-34721922 | None:intergenic | 25.0% |
! | AGGAAAAATTGTTCTTTCAA+AGG | - | chr6.4:34721278-34721297 | None:intergenic | 25.0% |
! | CAACATGTTAAAACATTTAC+AGG | - | chr6.4:34721797-34721816 | None:intergenic | 25.0% |
! | CCATAAAAAGTTACCATTTA+AGG | - | chr6.4:34722447-34722466 | None:intergenic | 25.0% |
! | TCTCTCATAACAAATTTGAA+TGG | + | chr6.4:34721397-34721416 | MS.gene92623:intron | 25.0% |
! | TTGAATGTAATAACATGTGT+TGG | + | chr6.4:34721182-34721201 | MS.gene92623:intron | 25.0% |
!! | CCTTAAATGGTAACTTTTTA+TGG | + | chr6.4:34722444-34722463 | MS.gene92623:intron | 25.0% |
!! | GCTTATTTGAGTTTATATAG+TGG | + | chr6.4:34720604-34720623 | MS.gene92623:intron | 25.0% |
!! | GTGAAGTTAAAATTTTGTTC+TGG | + | chr6.4:34721761-34721780 | MS.gene92623:intron | 25.0% |
!! | TGTAACCATTTGATACATTT+TGG | + | chr6.4:34723259-34723278 | MS.gene92623:intron | 25.0% |
!! | TTGTAAATTTCTCCTTTTGA+TGG | + | chr6.4:34722963-34722982 | MS.gene92623:intron | 25.0% |
!!! | TAAACTGTCTGATCTTTTTT+AGG | - | chr6.4:34721298-34721317 | None:intergenic | 25.0% |
!!! | TAAATTATTGGTTGATAGGA+AGG | + | chr6.4:34721535-34721554 | MS.gene92623:intron | 25.0% |
!!! | TGAGTAAGTGAATTTTTTGA+AGG | + | chr6.4:34720697-34720716 | MS.gene92623:intron | 25.0% |
!!! | TTTTTTTTTGTAAGTTCTCC+AGG | + | chr6.4:34720841-34720860 | MS.gene92623:intron | 25.0% |
ACAAATATACACCAAATGGT+GGG | + | chr6.4:34722260-34722279 | MS.gene92623:intron | 30.0% | |
AGATACTAGCATAACAAGAT+AGG | - | chr6.4:34721993-34722012 | None:intergenic | 30.0% | |
ATATAGACTTAGACCATGTT+TGG | - | chr6.4:34721003-34721022 | None:intergenic | 30.0% | |
ATCAGACAGTTTAAAAGGAA+TGG | + | chr6.4:34721305-34721324 | MS.gene92623:intron | 30.0% | |
ATTGGAGAAAAACCCTAATT+TGG | - | chr6.4:34720385-34720404 | None:intergenic | 30.0% | |
CTGGTTACTTCTATTATGTT+TGG | + | chr6.4:34722868-34722887 | MS.gene92623:intron | 30.0% | |
GAGAGAAAATTGACGAAAAA+TGG | - | chr6.4:34723022-34723041 | None:intergenic | 30.0% | |
TAAAAAAAAAAAGGGCAACC+CGG | - | chr6.4:34722326-34722345 | None:intergenic | 30.0% | |
TAATGTTGATCGAAAAGAAC+TGG | + | chr6.4:34722849-34722868 | MS.gene92623:intron | 30.0% | |
TACAAATATACACCAAATGG+TGG | + | chr6.4:34722259-34722278 | MS.gene92623:intron | 30.0% | |
TCACTTACTCATGTTATTAC+CGG | - | chr6.4:34720688-34720707 | None:intergenic | 30.0% | |
TGTGTCCAAAATGTATCAAA+TGG | - | chr6.4:34723267-34723286 | None:intergenic | 30.0% | |
TTCATACTTCATCAACCAAA+AGG | - | chr6.4:34721825-34721844 | None:intergenic | 30.0% | |
! | GTTTTGTAGTATGTTACTAG+TGG | + | chr6.4:34721368-34721387 | MS.gene92623:intron | 30.0% |
!! | TCAAATTCTTTAGCTTGCAT+TGG | + | chr6.4:34723218-34723237 | MS.gene92623:intron | 30.0% |
AAAGTGAATGATCGAAGTTG+GGG | - | chr6.4:34722127-34722146 | None:intergenic | 35.0% | |
AATTGATTGTGGAAGACTCA+TGG | + | chr6.4:34723533-34723552 | MS.gene92623:CDS | 35.0% | |
AATTGTGCAGCTATGAAGAT+TGG | + | chr6.4:34723500-34723519 | MS.gene92623:intron | 35.0% | |
ACAGAAAACACATGACATGA+AGG | - | chr6.4:34723472-34723491 | None:intergenic | 35.0% | |
ACAGAACATAAAAATGAGCC+TGG | - | chr6.4:34720488-34720507 | None:intergenic | 35.0% | |
AGACAGTTTAAAAGGAATGG+AGG | + | chr6.4:34721308-34721327 | MS.gene92623:intron | 35.0% | |
AGTATGTGTAATCAGTGGAT+TGG | + | chr6.4:34722468-34722487 | MS.gene92623:intron | 35.0% | |
ATGTATTTCGATGTCTTTCG+AGG | - | chr6.4:34721658-34721677 | None:intergenic | 35.0% | |
ATTACCACACTCACCAAATT+AGG | + | chr6.4:34720369-34720388 | MS.gene92623:intron | 35.0% | |
ATTGTGCAGCTATGAAGATT+GGG | + | chr6.4:34723501-34723520 | MS.gene92623:intron | 35.0% | |
CAAAGTGAATGATCGAAGTT+GGG | - | chr6.4:34722128-34722147 | None:intergenic | 35.0% | |
CACTAGTTAAGGACCTTAAA+TGG | + | chr6.4:34722431-34722450 | MS.gene92623:intron | 35.0% | |
GAATTCCTTACTTCAATCTC+AGG | - | chr6.4:34721453-34721472 | None:intergenic | 35.0% | |
GACAGTTTAAAAGGAATGGA+GGG | + | chr6.4:34721309-34721328 | MS.gene92623:intron | 35.0% | |
TAGATCCTGAGATTGAAGTA+AGG | + | chr6.4:34721445-34721464 | MS.gene92623:intron | 35.0% | |
TTACCACACTCACCAAATTA+GGG | + | chr6.4:34720370-34720389 | MS.gene92623:intron | 35.0% | |
TTAGACTGTTTAGCCAAACA+TGG | + | chr6.4:34720987-34721006 | MS.gene92623:intron | 35.0% | |
TTGAAGGTAATCACATGTGT+TGG | + | chr6.4:34720713-34720732 | MS.gene92623:intron | 35.0% | |
! | AATACCTGATTTGAAGAGCA+CGG | - | chr6.4:34721714-34721733 | None:intergenic | 35.0% |
! | ACTATAATGACTTGGACATC+GGG | + | chr6.4:34720299-34720318 | MS.gene92623:CDS | 35.0% |
! | ACTTTCTCTCTCTTTTGCTT+TGG | + | chr6.4:34723063-34723082 | MS.gene92623:intron | 35.0% |
! | ATGGAAGTATGTGTAATCAG+TGG | + | chr6.4:34722463-34722482 | MS.gene92623:intron | 35.0% |
! | CTGGAACCTTTTCATTTACA+GGG | - | chr6.4:34722745-34722764 | None:intergenic | 35.0% |
! | GACTATAATGACTTGGACAT+CGG | + | chr6.4:34720298-34720317 | MS.gene92623:CDS | 35.0% |
! | TAACATGTTGTCTTGCCTTT+TGG | + | chr6.4:34721807-34721826 | MS.gene92623:intron | 35.0% |
! | TGGAACCTTTTCATTTACAG+GGG | - | chr6.4:34722744-34722763 | None:intergenic | 35.0% |
!! | AAGTTTTAATGTCCAAAGCC+TGG | - | chr6.4:34722764-34722783 | None:intergenic | 35.0% |
!! | ATATGGTATTGGCCATCAAA+AGG | - | chr6.4:34722978-34722997 | None:intergenic | 35.0% |
!!! | ACAGCGGTTTTAAGACTTTT+TGG | + | chr6.4:34720778-34720797 | MS.gene92623:intron | 35.0% |
!!! | TTAAGCTTGTTTTGCACTGT+GGG | + | chr6.4:34720568-34720587 | MS.gene92623:intron | 35.0% |
!!! | TTTAAGCTTGTTTTGCACTG+TGG | + | chr6.4:34720567-34720586 | MS.gene92623:intron | 35.0% |
AAGGACTCCATTAACTAGGA+AGG | - | chr6.4:34722159-34722178 | None:intergenic | 40.0% | |
AAGTAACGACGGATGGTAAA+GGG | - | chr6.4:34723356-34723375 | None:intergenic | 40.0% | |
AAGTATGAATGCACCTGTCA+TGG | + | chr6.4:34721836-34721855 | MS.gene92623:intron | 40.0% | |
AATGAAAAGGTTCCAGGCTT+TGG | + | chr6.4:34722749-34722768 | MS.gene92623:intron | 40.0% | |
ACTCATGTTATTACCGGTGT+TGG | - | chr6.4:34720682-34720701 | None:intergenic | 40.0% | |
ACTCCATTAACTAGGAAGGA+GGG | - | chr6.4:34722155-34722174 | None:intergenic | 40.0% | |
ACTTCAATCTCAGGATCTAC+TGG | - | chr6.4:34721444-34721463 | None:intergenic | 40.0% | |
AGTCAAGGACTCCATTAACT+AGG | - | chr6.4:34722163-34722182 | None:intergenic | 40.0% | |
AGTGGTCTTCATATGGAATG+GGG | + | chr6.4:34722081-34722100 | MS.gene92623:intron | 40.0% | |
ATAGACCAGTGGTCTTCATA+TGG | + | chr6.4:34722074-34722093 | MS.gene92623:intron | 40.0% | |
CAACGACAACAATGATGAGA+TGG | + | chr6.4:34721579-34721598 | MS.gene92623:CDS | 40.0% | |
CAAGTCATTATAGTCGTCGT+CGG | - | chr6.4:34720293-34720312 | None:intergenic | 40.0% | |
CACAGTAATTACCTTCCATC+AGG | - | chr6.4:34723380-34723399 | None:intergenic | 40.0% | |
CACTGTGGGTATGTTTGAAT+TGG | + | chr6.4:34720582-34720601 | MS.gene92623:intron | 40.0% | |
CAGTGGTCTTCATATGGAAT+GGG | + | chr6.4:34722080-34722099 | MS.gene92623:intron | 40.0% | |
CCAAAGTGAATGATCGAAGT+TGG | - | chr6.4:34722129-34722148 | None:intergenic | 40.0% | |
CCAACTTCGATCATTCACTT+TGG | + | chr6.4:34722126-34722145 | MS.gene92623:intron | 40.0% | |
CCTGGCTTAACAAATATTCG+TGG | - | chr6.4:34720470-34720489 | None:intergenic | 40.0% | |
CCTGTAAATGAAAAGGTTCC+AGG | + | chr6.4:34722743-34722762 | MS.gene92623:intron | 40.0% | |
TTGTGCAGCTATGAAGATTG+GGG | + | chr6.4:34723502-34723521 | MS.gene92623:intron | 40.0% | |
TTTCTCTCGAAGCTCTTTCA+TGG | - | chr6.4:34723327-34723346 | None:intergenic | 40.0% | |
! | AAACCCTAATTTGGTGAGTG+TGG | - | chr6.4:34720376-34720395 | None:intergenic | 40.0% |
! | ATACCTGATTTGAAGAGCAC+GGG | - | chr6.4:34721713-34721732 | None:intergenic | 40.0% |
! | CCACGAATATTTGTTAAGCC+AGG | + | chr6.4:34720467-34720486 | MS.gene92623:intron | 40.0% |
! | CCTGGAACCTTTTCATTTAC+AGG | - | chr6.4:34722746-34722765 | None:intergenic | 40.0% |
! | CTCTTCTTGTTCCTTTTCCT+CGG | - | chr6.4:34721623-34721642 | None:intergenic | 40.0% |
! | GTAATCACATGTGTTGGTGT+CGG | + | chr6.4:34720719-34720738 | MS.gene92623:intron | 40.0% |
! | TCCTTTTCCTCGGTTTCAAT+AGG | - | chr6.4:34721613-34721632 | None:intergenic | 40.0% |
!! | GCTATTTCTACAAGCTATCC+TGG | - | chr6.4:34720862-34720881 | None:intergenic | 40.0% |
!! | GGGAGTTGATGAATTGATTG+TGG | + | chr6.4:34723522-34723541 | MS.gene92623:CDS | 40.0% |
AAAGGTTCTCGTACCTCAAG+TGG | - | chr6.4:34721885-34721904 | None:intergenic | 45.0% | |
AAATGTTAACTAGTGCCCCC+GGG | + | chr6.4:34722407-34722426 | MS.gene92623:intron | 45.0% | |
AAGGTTCTCGTACCTCAAGT+GGG | - | chr6.4:34721884-34721903 | None:intergenic | 45.0% | |
AGTTCATCTTTCCTTTGCCC+TGG | + | chr6.4:34722718-34722737 | MS.gene92623:intron | 45.0% | |
CAAGTAACGACGGATGGTAA+AGG | - | chr6.4:34723357-34723376 | None:intergenic | 45.0% | |
CACAGCCATAGTTAGAGTCA+AGG | - | chr6.4:34722178-34722197 | None:intergenic | 45.0% | |
CATATGTCGGTATAGACCAG+TGG | + | chr6.4:34722063-34722082 | MS.gene92623:intron | 45.0% | |
CCAGTGGTCTTCATATGGAA+TGG | + | chr6.4:34722079-34722098 | MS.gene92623:intron | 45.0% | |
CCATTCCATATGAAGACCAC+TGG | - | chr6.4:34722082-34722101 | None:intergenic | 45.0% | |
CGACGACGACTATAATGACT+TGG | + | chr6.4:34720291-34720310 | MS.gene92623:CDS | 45.0% | |
CTTGACTCTAACTATGGCTG+TGG | + | chr6.4:34722176-34722195 | MS.gene92623:intron | 45.0% | |
GAAATGTTAACTAGTGCCCC+CGG | + | chr6.4:34722406-34722425 | MS.gene92623:intron | 45.0% | |
GACAACAATGATGAGATGGC+TGG | + | chr6.4:34721583-34721602 | MS.gene92623:CDS | 45.0% | |
GACTCATGGAAGAGGCAAAT+TGG | + | chr6.4:34723547-34723566 | MS.gene92623:CDS | 45.0% | |
GACTCCATTAACTAGGAAGG+AGG | - | chr6.4:34722156-34722175 | None:intergenic | 45.0% | |
GCCTATTGAAACCGAGGAAA+AGG | + | chr6.4:34721609-34721628 | MS.gene92623:CDS | 45.0% | |
GGAGTCCTTGACTCTAACTA+TGG | + | chr6.4:34722170-34722189 | MS.gene92623:intron | 45.0% | |
GTCTTTCGAGGTCTTTCTGT+TGG | - | chr6.4:34721646-34721665 | None:intergenic | 45.0% | |
GTGGTCTTCATATGGAATGG+GGG | + | chr6.4:34722082-34722101 | MS.gene92623:intron | 45.0% | |
TCATGGAAGAGGCAAATTGG+TGG | + | chr6.4:34723550-34723569 | MS.gene92623:CDS | 45.0% | |
TGACCCTCCTTCCTAGTTAA+TGG | + | chr6.4:34722149-34722168 | MS.gene92623:intron | 45.0% | |
TGGTCTTCATATGGAATGGG+GGG | + | chr6.4:34722083-34722102 | MS.gene92623:intron | 45.0% | |
TGTCAGTGTTGTGTCTCTGT+CGG | - | chr6.4:34721113-34721132 | None:intergenic | 45.0% | |
TTCCATCAGGCAAGTAACGA+CGG | - | chr6.4:34723367-34723386 | None:intergenic | 45.0% | |
TTGTGGAAGACTCATGGAAG+AGG | + | chr6.4:34723539-34723558 | MS.gene92623:CDS | 45.0% | |
! | CTTTTCATTTACAGGGGCCA+GGG | - | chr6.4:34722738-34722757 | None:intergenic | 45.0% |
! | TATGAGCGTGCACGGATTTT+GGG | + | chr6.4:34721685-34721704 | MS.gene92623:CDS | 45.0% |
!! | AACATGTGTTGGTGTCGTGT+TGG | + | chr6.4:34721193-34721212 | MS.gene92623:intron | 45.0% |
!! | AGGCTGATTTTCTTGTGAGG+CGG | + | chr6.4:34722607-34722626 | MS.gene92623:intron | 45.0% |
!! | AGTATGCTTAAAGAGTGCCC+CGG | + | chr6.4:34722534-34722553 | MS.gene92623:intron | 45.0% |
!! | CTGTCATGGTTGAGTTGGAA+GGG | + | chr6.4:34721850-34721869 | MS.gene92623:CDS | 45.0% |
!! | GGAAGGCTGATTTTCTTGTG+AGG | + | chr6.4:34722604-34722623 | MS.gene92623:intron | 45.0% |
!! | TCGCTTTGGAAACGAGTGAA+AGG | + | chr6.4:34723422-34723441 | MS.gene92623:intron | 45.0% |
!! | TGTCATGGTTGAGTTGGAAG+GGG | + | chr6.4:34721851-34721870 | MS.gene92623:CDS | 45.0% |
!! | TGTTGGTGTCGTGTTGGTAT+CGG | + | chr6.4:34721199-34721218 | MS.gene92623:intron | 45.0% |
!! | AAAATAATTAATAATCAATT+TGG | - | chr6.4:34723190-34723209 | None:intergenic | 5.0% |
!!! | AATAATAACAAATTTTAATA+TGG | + | chr6.4:34722582-34722601 | MS.gene92623:intron | 5.0% |
!!! | ATAATAACAAATTTTAATAT+GGG | + | chr6.4:34722583-34722602 | MS.gene92623:intron | 5.0% |
!!! | TATATTTTTATTTTGAAATA+TGG | - | chr6.4:34722241-34722260 | None:intergenic | 5.0% |
AAGGTCCTTAACTAGTGCCC+CGG | - | chr6.4:34722428-34722447 | None:intergenic | 50.0% | |
AATGTTAACTAGTGCCCCCG+GGG | + | chr6.4:34722408-34722427 | MS.gene92623:intron | 50.0% | |
ACCGGACACACCTTTGATCA+GGG | + | chr6.4:34720744-34720763 | MS.gene92623:intron | 50.0% | |
ACGCCTTCGATCAGATGTGT+CGG | + | chr6.4:34721248-34721267 | MS.gene92623:intron | 50.0% | |
ACTAAAGCTCCCGCATATGC+AGG | - | chr6.4:34722300-34722319 | None:intergenic | 50.0% | |
ATCAGGCAAGTAACGACGGA+TGG | - | chr6.4:34723363-34723382 | None:intergenic | 50.0% | |
ATCCGTCGTTACTTGCCTGA+TGG | + | chr6.4:34723362-34723381 | MS.gene92623:CDS | 50.0% | |
CCTGGCCCCTGTAAATGAAA+AGG | + | chr6.4:34722736-34722755 | MS.gene92623:intron | 50.0% | |
CCTTCCAACTCAACCATGAC+AGG | - | chr6.4:34721852-34721871 | None:intergenic | 50.0% | |
CTAAAGCTCCCGCATATGCA+GGG | - | chr6.4:34722299-34722318 | None:intergenic | 50.0% | |
GGCGGGGTTGTCTTTAAATC+AGG | + | chr6.4:34722625-34722644 | MS.gene92623:intron | 50.0% | |
GTACCCGTGCTCTTCAAATC+AGG | + | chr6.4:34721707-34721726 | MS.gene92623:CDS | 50.0% | |
GTCGTTACTTGCCTGATGGA+AGG | + | chr6.4:34723366-34723385 | MS.gene92623:CDS | 50.0% | |
TCACCGACACATCTGATCGA+AGG | - | chr6.4:34721254-34721273 | None:intergenic | 50.0% | |
TCTTGTTAACAAGTGCCCCC+GGG | - | chr6.4:34722555-34722574 | None:intergenic | 50.0% | |
TGACACATACACGTCGACAC+CGG | + | chr6.4:34721128-34721147 | MS.gene92623:intron | 50.0% | |
TGACGAAGTATGAGCGTGCA+CGG | + | chr6.4:34721677-34721696 | MS.gene92623:CDS | 50.0% | |
TGCACCTGTCATGGTTGAGT+TGG | + | chr6.4:34721845-34721864 | MS.gene92623:CDS | 50.0% | |
TGGAGAGCCTATTGAAACCG+AGG | + | chr6.4:34721603-34721622 | MS.gene92623:CDS | 50.0% | |
! | ACACCTTTGATCAGGGGTGT+TGG | + | chr6.4:34720751-34720770 | MS.gene92623:intron | 50.0% |
! | CCTTTTCATTTACAGGGGCC+AGG | - | chr6.4:34722739-34722758 | None:intergenic | 50.0% |
! | GTATGAGCGTGCACGGATTT+TGG | + | chr6.4:34721684-34721703 | MS.gene92623:CDS | 50.0% |
! | GTCTTGTTAACAAGTGCCCC+CGG | - | chr6.4:34722556-34722575 | None:intergenic | 50.0% |
! | TTGATAGGAAGGTGCAGAGG+TGG | + | chr6.4:34721546-34721565 | MS.gene92623:intron | 50.0% |
!! | CCTGTCATGGTTGAGTTGGA+AGG | + | chr6.4:34721849-34721868 | MS.gene92623:CDS | 50.0% |
!! | GCTGATTTTCTTGTGAGGCG+GGG | + | chr6.4:34722609-34722628 | MS.gene92623:intron | 50.0% |
!! | GGCTGATTTTCTTGTGAGGC+GGG | + | chr6.4:34722608-34722627 | MS.gene92623:intron | 50.0% |
!! | GTATGCTTAAAGAGTGCCCC+GGG | + | chr6.4:34722535-34722554 | MS.gene92623:intron | 50.0% |
!! | TATGCTTAAAGAGTGCCCCG+GGG | + | chr6.4:34722536-34722555 | MS.gene92623:intron | 50.0% |
!! | TGGTTGATAGGAAGGTGCAG+AGG | + | chr6.4:34721543-34721562 | MS.gene92623:intron | 50.0% |
AGGTCCTTAACTAGTGCCCC+GGG | - | chr6.4:34722427-34722446 | None:intergenic | 55.0% | |
ATTTACAGGGGCCAGGGCAA+AGG | - | chr6.4:34722732-34722751 | None:intergenic | 55.0% | |
CACCGGACACACCTTTGATC+AGG | + | chr6.4:34720743-34720762 | MS.gene92623:intron | 55.0% | |
CCGGACACACCTTTGATCAG+GGG | + | chr6.4:34720745-34720764 | MS.gene92623:intron | 55.0% | |
CTTGTTAACAAGTGCCCCCG+GGG | - | chr6.4:34722554-34722573 | None:intergenic | 55.0% | |
GCACCAACACCCCTGATCAA+AGG | - | chr6.4:34720757-34720776 | None:intergenic | 55.0% | |
GTCAGTGTCGTGTCTGGTGT+CGG | - | chr6.4:34720656-34720675 | None:intergenic | 55.0% | |
! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr6.4:34722304-34722323 | MS.gene92623:intron | 55.0% |
! | CATCTGATCGAAGGCGTGTC+TGG | - | chr6.4:34721245-34721264 | None:intergenic | 55.0% |
! | CCCCTGATCAAAGGTGTGTC+CGG | - | chr6.4:34720748-34720767 | None:intergenic | 55.0% |
!! | ATGCTTAAAGAGTGCCCCGG+GGG | + | chr6.4:34722537-34722556 | MS.gene92623:intron | 55.0% |
!! | CATGTGTTGGTGTCGGACAC+CGG | + | chr6.4:34720726-34720745 | MS.gene92623:intron | 55.0% |
AGGGGAGACTGACCCACTTG+AGG | + | chr6.4:34721869-34721888 | MS.gene92623:CDS | 60.0% | |
CATATGCAGGGTCCGGGAAG+GGG | - | chr6.4:34722287-34722306 | None:intergenic | 60.0% | |
CGACACTGACACGCCAACAC+CGG | + | chr6.4:34720666-34720685 | MS.gene92623:intron | 60.0% | |
CTTCCCGGACCCTGCATATG+CGG | + | chr6.4:34722287-34722306 | MS.gene92623:intron | 60.0% | |
GCATATGCAGGGTCCGGGAA+GGG | - | chr6.4:34722288-34722307 | None:intergenic | 60.0% | |
GGTCCTTAACTAGTGCCCCG+GGG | - | chr6.4:34722426-34722445 | None:intergenic | 60.0% | |
GTCCTTAACTAGTGCCCCGG+GGG | - | chr6.4:34722425-34722444 | None:intergenic | 60.0% | |
TGGCGTGTCAGTGTCGTGTC+TGG | - | chr6.4:34720662-34720681 | None:intergenic | 60.0% | |
TTCCCGGACCCTGCATATGC+GGG | + | chr6.4:34722288-34722307 | MS.gene92623:intron | 60.0% | |
! | CAAATGGTGGGACCCCTTCC+CGG | + | chr6.4:34722272-34722291 | MS.gene92623:intron | 60.0% |
! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr6.4:34722305-34722324 | MS.gene92623:intron | 60.0% |
!! | CAGGGGTGTTGGTGCTACAG+CGG | + | chr6.4:34720762-34720781 | MS.gene92623:intron | 60.0% |
CGCATATGCAGGGTCCGGGA+AGG | - | chr6.4:34722289-34722308 | None:intergenic | 65.0% | |
CGGGAAGGGGTCCCACCATT+TGG | - | chr6.4:34722274-34722293 | None:intergenic | 65.0% | |
CTCCCGCATATGCAGGGTCC+GGG | - | chr6.4:34722293-34722312 | None:intergenic | 65.0% | |
GCTCCCGCATATGCAGGGTC+CGG | - | chr6.4:34722294-34722313 | None:intergenic | 65.0% | |
! | TGCCCCCGGGGCACTAGTTA+AGG | + | chr6.4:34722420-34722439 | MS.gene92623:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 34720286 | 34723579 | 34720286 | ID=MS.gene92623 |
chr6.4 | mRNA | 34720286 | 34723579 | 34720286 | ID=MS.gene92623.t1;Parent=MS.gene92623 |
chr6.4 | exon | 34720286 | 34720320 | 34720286 | ID=MS.gene92623.t1.exon1;Parent=MS.gene92623.t1 |
chr6.4 | CDS | 34720286 | 34720320 | 34720286 | ID=cds.MS.gene92623.t1;Parent=MS.gene92623.t1 |
chr6.4 | exon | 34721428 | 34721461 | 34721428 | ID=MS.gene92623.t1.exon2;Parent=MS.gene92623.t1 |
chr6.4 | CDS | 34721428 | 34721461 | 34721428 | ID=cds.MS.gene92623.t1;Parent=MS.gene92623.t1 |
chr6.4 | exon | 34721553 | 34721728 | 34721553 | ID=MS.gene92623.t1.exon3;Parent=MS.gene92623.t1 |
chr6.4 | CDS | 34721553 | 34721728 | 34721553 | ID=cds.MS.gene92623.t1;Parent=MS.gene92623.t1 |
chr6.4 | exon | 34721839 | 34721890 | 34721839 | ID=MS.gene92623.t1.exon4;Parent=MS.gene92623.t1 |
chr6.4 | CDS | 34721839 | 34721890 | 34721839 | ID=cds.MS.gene92623.t1;Parent=MS.gene92623.t1 |
chr6.4 | exon | 34723320 | 34723387 | 34723320 | ID=MS.gene92623.t1.exon5;Parent=MS.gene92623.t1 |
chr6.4 | CDS | 34723320 | 34723387 | 34723320 | ID=cds.MS.gene92623.t1;Parent=MS.gene92623.t1 |
chr6.4 | exon | 34723510 | 34723579 | 34723510 | ID=MS.gene92623.t1.exon6;Parent=MS.gene92623.t1 |
chr6.4 | CDS | 34723510 | 34723579 | 34723510 | ID=cds.MS.gene92623.t1;Parent=MS.gene92623.t1 |
Gene Sequence |
Protein sequence |