AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92623


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92623.t1 MTR_0019s0160 97.222 144 4 0 1 144 1 144 5.60e-98 278
MS.gene92623.t1 MTR_7g092450 84.138 145 22 1 1 144 1 145 9.50e-73 214
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92623.t1 AT5G51940 79.310 145 28 2 1 144 1 144 1.04e-72 214
MS.gene92623.t1 AT2G04630 79.310 145 28 2 1 144 1 144 9.51e-72 212

Find 45 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATGAGCGTGCACGGATTT+TGG 0.154400 6.4:+34721684 MS.gene92623:CDS
TTTCTCTCGAAGCTCTTTCA+TGG 0.342410 6.4:-34723324 None:intergenic
GACTCATGGAAGAGGCAAAT+TGG 0.371145 6.4:+34723547 MS.gene92623:CDS
GTCTTTCGAGGTCTTTCTGT+TGG 0.413105 6.4:-34721643 None:intergenic
GCCTATTGAAACCGAGGAAA+AGG 0.427074 6.4:+34721609 MS.gene92623:CDS
GAATTCCTTACTTCAATCTC+AGG 0.430246 6.4:-34721450 None:intergenic
AATTGTGCAGCTATGAAGAT+TGG 0.435283 6.4:+34723500 MS.gene92623:intron
ATTGTGCAGCTATGAAGATT+GGG 0.436731 6.4:+34723501 MS.gene92623:intron
GTACCCGTGCTCTTCAAATC+AGG 0.449097 6.4:+34721707 MS.gene92623:CDS
GGCAAATTGGTGGTGATTGA+TGG 0.457288 6.4:+34723560 MS.gene92623:CDS
ATGTATTTCGATGTCTTTCG+AGG 0.461953 6.4:-34721655 None:intergenic
GACTATAATGACTTGGACAT+CGG 0.469104 6.4:+34720298 MS.gene92623:CDS
ACTTCAATCTCAGGATCTAC+TGG 0.475450 6.4:-34721441 None:intergenic
CAAGTAACGACGGATGGTAA+AGG 0.490956 6.4:-34723354 None:intergenic
CACAGTAATTACCTTCCATC+AGG 0.492790 6.4:-34723377 None:intergenic
CCTTCCAACTCAACCATGAC+AGG 0.504355 6.4:-34721849 None:intergenic
GGGAGTTGATGAATTGATTG+TGG 0.509393 6.4:+34723522 MS.gene92623:CDS
AAGTAACGACGGATGGTAAA+GGG 0.509534 6.4:-34723353 None:intergenic
ACTATAATGACTTGGACATC+GGG 0.516979 6.4:+34720299 MS.gene92623:CDS
CTGTCATGGTTGAGTTGGAA+GGG 0.541235 6.4:+34721850 MS.gene92623:CDS
ATCCGTCGTTACTTGCCTGA+TGG 0.543002 6.4:+34723362 MS.gene92623:CDS
AAAGGTTCTCGTACCTCAAG+TGG 0.543796 6.4:-34721882 None:intergenic
TGCACCTGTCATGGTTGAGT+TGG 0.544974 6.4:+34721845 MS.gene92623:CDS
CGACGACGACTATAATGACT+TGG 0.558668 6.4:+34720291 MS.gene92623:CDS
AATTGATTGTGGAAGACTCA+TGG 0.564886 6.4:+34723533 MS.gene92623:CDS
GACAACAATGATGAGATGGC+TGG 0.565670 6.4:+34721583 MS.gene92623:CDS
AATACCTGATTTGAAGAGCA+CGG 0.568038 6.4:-34721711 None:intergenic
ATACCTGATTTGAAGAGCAC+GGG 0.578359 6.4:-34721710 None:intergenic
GTCGTTACTTGCCTGATGGA+AGG 0.583890 6.4:+34723366 MS.gene92623:CDS
TTGTGGAAGACTCATGGAAG+AGG 0.587346 6.4:+34723539 MS.gene92623:CDS
CCTGTCATGGTTGAGTTGGA+AGG 0.591673 6.4:+34721849 MS.gene92623:CDS
ATCAGGCAAGTAACGACGGA+TGG 0.598660 6.4:-34723360 None:intergenic
AAGTATGAATGCACCTGTCA+TGG 0.600527 6.4:+34721836 MS.gene92623:intron
TTGATAGGAAGGTGCAGAGG+TGG 0.602482 6.4:+34721546 MS.gene92623:intron
TGACGAAGTATGAGCGTGCA+CGG 0.603590 6.4:+34721677 MS.gene92623:CDS
TGTCATGGTTGAGTTGGAAG+GGG 0.604272 6.4:+34721851 MS.gene92623:CDS
TCATGGAAGAGGCAAATTGG+TGG 0.616416 6.4:+34723550 MS.gene92623:CDS
CAACGACAACAATGATGAGA+TGG 0.626792 6.4:+34721579 MS.gene92623:CDS
TGGAGAGCCTATTGAAACCG+AGG 0.643087 6.4:+34721603 MS.gene92623:CDS
AGGGGAGACTGACCCACTTG+AGG 0.643885 6.4:+34721869 MS.gene92623:CDS
CAAGTCATTATAGTCGTCGT+CGG 0.645335 6.4:-34720290 None:intergenic
TTCCATCAGGCAAGTAACGA+CGG 0.645675 6.4:-34723364 None:intergenic
TTGTGCAGCTATGAAGATTG+GGG 0.646097 6.4:+34723502 MS.gene92623:intron
TGGTTGATAGGAAGGTGCAG+AGG 0.655672 6.4:+34721543 MS.gene92623:intron
AAGGTTCTCGTACCTCAAGT+GGG 0.679566 6.4:-34721881 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAATAATAAAAAATATC+AGG - chr6.4:34720436-34720455 None:intergenic 10.0%
!! TTAAAAAATGAAAATTGAAT+TGG - chr6.4:34720403-34720422 None:intergenic 10.0%
!!! AAAATTTGTTATTATTGTAA+GGG - chr6.4:34722578-34722597 None:intergenic 10.0%
!!! AAAATTTTACAAAGAAAATT+AGG - chr6.4:34723103-34723122 None:intergenic 10.0%
!!! ATATTTTCATATTACAATAA+GGG + chr6.4:34722384-34722403 MS.gene92623:intron 10.0%
!!! TAAAATTTGTTATTATTGTA+AGG - chr6.4:34722579-34722598 None:intergenic 10.0%
!!! TGATGAATTTTTTAAATTAT+TGG + chr6.4:34721523-34721542 MS.gene92623:intron 10.0%
!! AATAGGAAATAAAAACAAAA+AGG - chr6.4:34720536-34720555 None:intergenic 15.0%
!! ATTAGCAGTAAAAAAAAAAA+GGG - chr6.4:34722334-34722353 None:intergenic 15.0%
!! CTTAAAAACATGAATATAAT+AGG - chr6.4:34720553-34720572 None:intergenic 15.0%
!! CTTAATATTCATATATGTTT+GGG - chr6.4:34721492-34721511 None:intergenic 15.0%
!! CTTATTGTAATATGAAAATA+TGG - chr6.4:34722385-34722404 None:intergenic 15.0%
!! TCAAATATCATTTATCTATA+TGG - chr6.4:34722995-34723014 None:intergenic 15.0%
!! TTTACAATCTTATTATTCAA+AGG - chr6.4:34722950-34722969 None:intergenic 15.0%
!!! CATATTTTCATATTACAATA+AGG + chr6.4:34722383-34722402 MS.gene92623:intron 15.0%
!!! TTTTTAAATTATTGGTTGAT+AGG + chr6.4:34721531-34721550 MS.gene92623:intron 15.0%
!!! TTTTTTTTTCAAATTACTAC+CGG - chr6.4:34721150-34721169 None:intergenic 15.0%
!! AACATGTTAAAACATTTACA+GGG - chr6.4:34721796-34721815 None:intergenic 20.0%
!! AGCTAAACATACAAAATTAT+AGG - chr6.4:34722675-34722694 None:intergenic 20.0%
!! ATATACAAATATACACCAAA+TGG + chr6.4:34722256-34722275 MS.gene92623:intron 20.0%
!! ATCATTTATCTATATGGTAT+TGG - chr6.4:34722989-34723008 None:intergenic 20.0%
!! CAAAGCGAAAAAAAAAAAAA+AGG - chr6.4:34723410-34723429 None:intergenic 20.0%
!! CATTAGCAGTAAAAAAAAAA+AGG - chr6.4:34722335-34722354 None:intergenic 20.0%
!! CCAAACATATATGAATATTA+AGG + chr6.4:34721490-34721509 MS.gene92623:intron 20.0%
!! CCTTAATATTCATATATGTT+TGG - chr6.4:34721493-34721512 None:intergenic 20.0%
!! TCTAATTTCAAAACATATGT+CGG + chr6.4:34722050-34722069 MS.gene92623:intron 20.0%
!! TTACAAAGAAAATTAGGTAT+TGG - chr6.4:34723097-34723116 None:intergenic 20.0%
!!! CTTTTTTTTTTTTTTCGCTT+TGG + chr6.4:34723408-34723427 MS.gene92623:intron 20.0%
!!! TAAATATGTTTTGAAGTCAA+CGG - chr6.4:34722895-34722914 None:intergenic 20.0%
!!! TAACAAATTTTAATATGGGA+AGG + chr6.4:34722587-34722606 MS.gene92623:intron 20.0%
!!! TACATGTCTTTAAAGATTTA+AGG + chr6.4:34721022-34721041 MS.gene92623:intron 20.0%
!!! TTTATTTTGAAATATGGATC+AGG - chr6.4:34722235-34722254 None:intergenic 20.0%
!!! TTTTTTTACTGCTAATGTAT+GGG + chr6.4:34722338-34722357 MS.gene92623:intron 20.0%
!!! TTTTTTTTACTGCTAATGTA+TGG + chr6.4:34722337-34722356 MS.gene92623:intron 20.0%
! AAAACACATATCTCATTAAC+TGG - chr6.4:34721353-34721372 None:intergenic 25.0%
! AAAAGATCAGACAGTTTAAA+AGG + chr6.4:34721300-34721319 MS.gene92623:intron 25.0%
! AAACTTAAACATTTACTTCG+TGG + chr6.4:34722778-34722797 MS.gene92623:intron 25.0%
! AAATGAGTTAACAGAAGAAA+AGG - chr6.4:34721903-34721922 None:intergenic 25.0%
! AGGAAAAATTGTTCTTTCAA+AGG - chr6.4:34721278-34721297 None:intergenic 25.0%
! CAACATGTTAAAACATTTAC+AGG - chr6.4:34721797-34721816 None:intergenic 25.0%
! CCATAAAAAGTTACCATTTA+AGG - chr6.4:34722447-34722466 None:intergenic 25.0%
! TCTCTCATAACAAATTTGAA+TGG + chr6.4:34721397-34721416 MS.gene92623:intron 25.0%
! TTGAATGTAATAACATGTGT+TGG + chr6.4:34721182-34721201 MS.gene92623:intron 25.0%
!! CCTTAAATGGTAACTTTTTA+TGG + chr6.4:34722444-34722463 MS.gene92623:intron 25.0%
!! GCTTATTTGAGTTTATATAG+TGG + chr6.4:34720604-34720623 MS.gene92623:intron 25.0%
!! GTGAAGTTAAAATTTTGTTC+TGG + chr6.4:34721761-34721780 MS.gene92623:intron 25.0%
!! TGTAACCATTTGATACATTT+TGG + chr6.4:34723259-34723278 MS.gene92623:intron 25.0%
!! TTGTAAATTTCTCCTTTTGA+TGG + chr6.4:34722963-34722982 MS.gene92623:intron 25.0%
!!! TAAACTGTCTGATCTTTTTT+AGG - chr6.4:34721298-34721317 None:intergenic 25.0%
!!! TAAATTATTGGTTGATAGGA+AGG + chr6.4:34721535-34721554 MS.gene92623:intron 25.0%
!!! TGAGTAAGTGAATTTTTTGA+AGG + chr6.4:34720697-34720716 MS.gene92623:intron 25.0%
!!! TTTTTTTTTGTAAGTTCTCC+AGG + chr6.4:34720841-34720860 MS.gene92623:intron 25.0%
ACAAATATACACCAAATGGT+GGG + chr6.4:34722260-34722279 MS.gene92623:intron 30.0%
AGATACTAGCATAACAAGAT+AGG - chr6.4:34721993-34722012 None:intergenic 30.0%
ATATAGACTTAGACCATGTT+TGG - chr6.4:34721003-34721022 None:intergenic 30.0%
ATCAGACAGTTTAAAAGGAA+TGG + chr6.4:34721305-34721324 MS.gene92623:intron 30.0%
ATTGGAGAAAAACCCTAATT+TGG - chr6.4:34720385-34720404 None:intergenic 30.0%
CTGGTTACTTCTATTATGTT+TGG + chr6.4:34722868-34722887 MS.gene92623:intron 30.0%
GAGAGAAAATTGACGAAAAA+TGG - chr6.4:34723022-34723041 None:intergenic 30.0%
TAAAAAAAAAAAGGGCAACC+CGG - chr6.4:34722326-34722345 None:intergenic 30.0%
TAATGTTGATCGAAAAGAAC+TGG + chr6.4:34722849-34722868 MS.gene92623:intron 30.0%
TACAAATATACACCAAATGG+TGG + chr6.4:34722259-34722278 MS.gene92623:intron 30.0%
TCACTTACTCATGTTATTAC+CGG - chr6.4:34720688-34720707 None:intergenic 30.0%
TGTGTCCAAAATGTATCAAA+TGG - chr6.4:34723267-34723286 None:intergenic 30.0%
TTCATACTTCATCAACCAAA+AGG - chr6.4:34721825-34721844 None:intergenic 30.0%
! GTTTTGTAGTATGTTACTAG+TGG + chr6.4:34721368-34721387 MS.gene92623:intron 30.0%
!! TCAAATTCTTTAGCTTGCAT+TGG + chr6.4:34723218-34723237 MS.gene92623:intron 30.0%
AAAGTGAATGATCGAAGTTG+GGG - chr6.4:34722127-34722146 None:intergenic 35.0%
AATTGATTGTGGAAGACTCA+TGG + chr6.4:34723533-34723552 MS.gene92623:CDS 35.0%
AATTGTGCAGCTATGAAGAT+TGG + chr6.4:34723500-34723519 MS.gene92623:intron 35.0%
ACAGAAAACACATGACATGA+AGG - chr6.4:34723472-34723491 None:intergenic 35.0%
ACAGAACATAAAAATGAGCC+TGG - chr6.4:34720488-34720507 None:intergenic 35.0%
AGACAGTTTAAAAGGAATGG+AGG + chr6.4:34721308-34721327 MS.gene92623:intron 35.0%
AGTATGTGTAATCAGTGGAT+TGG + chr6.4:34722468-34722487 MS.gene92623:intron 35.0%
ATGTATTTCGATGTCTTTCG+AGG - chr6.4:34721658-34721677 None:intergenic 35.0%
ATTACCACACTCACCAAATT+AGG + chr6.4:34720369-34720388 MS.gene92623:intron 35.0%
ATTGTGCAGCTATGAAGATT+GGG + chr6.4:34723501-34723520 MS.gene92623:intron 35.0%
CAAAGTGAATGATCGAAGTT+GGG - chr6.4:34722128-34722147 None:intergenic 35.0%
CACTAGTTAAGGACCTTAAA+TGG + chr6.4:34722431-34722450 MS.gene92623:intron 35.0%
GAATTCCTTACTTCAATCTC+AGG - chr6.4:34721453-34721472 None:intergenic 35.0%
GACAGTTTAAAAGGAATGGA+GGG + chr6.4:34721309-34721328 MS.gene92623:intron 35.0%
TAGATCCTGAGATTGAAGTA+AGG + chr6.4:34721445-34721464 MS.gene92623:intron 35.0%
TTACCACACTCACCAAATTA+GGG + chr6.4:34720370-34720389 MS.gene92623:intron 35.0%
TTAGACTGTTTAGCCAAACA+TGG + chr6.4:34720987-34721006 MS.gene92623:intron 35.0%
TTGAAGGTAATCACATGTGT+TGG + chr6.4:34720713-34720732 MS.gene92623:intron 35.0%
! AATACCTGATTTGAAGAGCA+CGG - chr6.4:34721714-34721733 None:intergenic 35.0%
! ACTATAATGACTTGGACATC+GGG + chr6.4:34720299-34720318 MS.gene92623:CDS 35.0%
! ACTTTCTCTCTCTTTTGCTT+TGG + chr6.4:34723063-34723082 MS.gene92623:intron 35.0%
! ATGGAAGTATGTGTAATCAG+TGG + chr6.4:34722463-34722482 MS.gene92623:intron 35.0%
! CTGGAACCTTTTCATTTACA+GGG - chr6.4:34722745-34722764 None:intergenic 35.0%
! GACTATAATGACTTGGACAT+CGG + chr6.4:34720298-34720317 MS.gene92623:CDS 35.0%
! TAACATGTTGTCTTGCCTTT+TGG + chr6.4:34721807-34721826 MS.gene92623:intron 35.0%
! TGGAACCTTTTCATTTACAG+GGG - chr6.4:34722744-34722763 None:intergenic 35.0%
!! AAGTTTTAATGTCCAAAGCC+TGG - chr6.4:34722764-34722783 None:intergenic 35.0%
!! ATATGGTATTGGCCATCAAA+AGG - chr6.4:34722978-34722997 None:intergenic 35.0%
!!! ACAGCGGTTTTAAGACTTTT+TGG + chr6.4:34720778-34720797 MS.gene92623:intron 35.0%
!!! TTAAGCTTGTTTTGCACTGT+GGG + chr6.4:34720568-34720587 MS.gene92623:intron 35.0%
!!! TTTAAGCTTGTTTTGCACTG+TGG + chr6.4:34720567-34720586 MS.gene92623:intron 35.0%
AAGGACTCCATTAACTAGGA+AGG - chr6.4:34722159-34722178 None:intergenic 40.0%
AAGTAACGACGGATGGTAAA+GGG - chr6.4:34723356-34723375 None:intergenic 40.0%
AAGTATGAATGCACCTGTCA+TGG + chr6.4:34721836-34721855 MS.gene92623:intron 40.0%
AATGAAAAGGTTCCAGGCTT+TGG + chr6.4:34722749-34722768 MS.gene92623:intron 40.0%
ACTCATGTTATTACCGGTGT+TGG - chr6.4:34720682-34720701 None:intergenic 40.0%
ACTCCATTAACTAGGAAGGA+GGG - chr6.4:34722155-34722174 None:intergenic 40.0%
ACTTCAATCTCAGGATCTAC+TGG - chr6.4:34721444-34721463 None:intergenic 40.0%
AGTCAAGGACTCCATTAACT+AGG - chr6.4:34722163-34722182 None:intergenic 40.0%
AGTGGTCTTCATATGGAATG+GGG + chr6.4:34722081-34722100 MS.gene92623:intron 40.0%
ATAGACCAGTGGTCTTCATA+TGG + chr6.4:34722074-34722093 MS.gene92623:intron 40.0%
CAACGACAACAATGATGAGA+TGG + chr6.4:34721579-34721598 MS.gene92623:CDS 40.0%
CAAGTCATTATAGTCGTCGT+CGG - chr6.4:34720293-34720312 None:intergenic 40.0%
CACAGTAATTACCTTCCATC+AGG - chr6.4:34723380-34723399 None:intergenic 40.0%
CACTGTGGGTATGTTTGAAT+TGG + chr6.4:34720582-34720601 MS.gene92623:intron 40.0%
CAGTGGTCTTCATATGGAAT+GGG + chr6.4:34722080-34722099 MS.gene92623:intron 40.0%
CCAAAGTGAATGATCGAAGT+TGG - chr6.4:34722129-34722148 None:intergenic 40.0%
CCAACTTCGATCATTCACTT+TGG + chr6.4:34722126-34722145 MS.gene92623:intron 40.0%
CCTGGCTTAACAAATATTCG+TGG - chr6.4:34720470-34720489 None:intergenic 40.0%
CCTGTAAATGAAAAGGTTCC+AGG + chr6.4:34722743-34722762 MS.gene92623:intron 40.0%
TTGTGCAGCTATGAAGATTG+GGG + chr6.4:34723502-34723521 MS.gene92623:intron 40.0%
TTTCTCTCGAAGCTCTTTCA+TGG - chr6.4:34723327-34723346 None:intergenic 40.0%
! AAACCCTAATTTGGTGAGTG+TGG - chr6.4:34720376-34720395 None:intergenic 40.0%
! ATACCTGATTTGAAGAGCAC+GGG - chr6.4:34721713-34721732 None:intergenic 40.0%
! CCACGAATATTTGTTAAGCC+AGG + chr6.4:34720467-34720486 MS.gene92623:intron 40.0%
! CCTGGAACCTTTTCATTTAC+AGG - chr6.4:34722746-34722765 None:intergenic 40.0%
! CTCTTCTTGTTCCTTTTCCT+CGG - chr6.4:34721623-34721642 None:intergenic 40.0%
! GTAATCACATGTGTTGGTGT+CGG + chr6.4:34720719-34720738 MS.gene92623:intron 40.0%
! TCCTTTTCCTCGGTTTCAAT+AGG - chr6.4:34721613-34721632 None:intergenic 40.0%
!! GCTATTTCTACAAGCTATCC+TGG - chr6.4:34720862-34720881 None:intergenic 40.0%
!! GGGAGTTGATGAATTGATTG+TGG + chr6.4:34723522-34723541 MS.gene92623:CDS 40.0%
AAAGGTTCTCGTACCTCAAG+TGG - chr6.4:34721885-34721904 None:intergenic 45.0%
AAATGTTAACTAGTGCCCCC+GGG + chr6.4:34722407-34722426 MS.gene92623:intron 45.0%
AAGGTTCTCGTACCTCAAGT+GGG - chr6.4:34721884-34721903 None:intergenic 45.0%
AGTTCATCTTTCCTTTGCCC+TGG + chr6.4:34722718-34722737 MS.gene92623:intron 45.0%
CAAGTAACGACGGATGGTAA+AGG - chr6.4:34723357-34723376 None:intergenic 45.0%
CACAGCCATAGTTAGAGTCA+AGG - chr6.4:34722178-34722197 None:intergenic 45.0%
CATATGTCGGTATAGACCAG+TGG + chr6.4:34722063-34722082 MS.gene92623:intron 45.0%
CCAGTGGTCTTCATATGGAA+TGG + chr6.4:34722079-34722098 MS.gene92623:intron 45.0%
CCATTCCATATGAAGACCAC+TGG - chr6.4:34722082-34722101 None:intergenic 45.0%
CGACGACGACTATAATGACT+TGG + chr6.4:34720291-34720310 MS.gene92623:CDS 45.0%
CTTGACTCTAACTATGGCTG+TGG + chr6.4:34722176-34722195 MS.gene92623:intron 45.0%
GAAATGTTAACTAGTGCCCC+CGG + chr6.4:34722406-34722425 MS.gene92623:intron 45.0%
GACAACAATGATGAGATGGC+TGG + chr6.4:34721583-34721602 MS.gene92623:CDS 45.0%
GACTCATGGAAGAGGCAAAT+TGG + chr6.4:34723547-34723566 MS.gene92623:CDS 45.0%
GACTCCATTAACTAGGAAGG+AGG - chr6.4:34722156-34722175 None:intergenic 45.0%
GCCTATTGAAACCGAGGAAA+AGG + chr6.4:34721609-34721628 MS.gene92623:CDS 45.0%
GGAGTCCTTGACTCTAACTA+TGG + chr6.4:34722170-34722189 MS.gene92623:intron 45.0%
GTCTTTCGAGGTCTTTCTGT+TGG - chr6.4:34721646-34721665 None:intergenic 45.0%
GTGGTCTTCATATGGAATGG+GGG + chr6.4:34722082-34722101 MS.gene92623:intron 45.0%
TCATGGAAGAGGCAAATTGG+TGG + chr6.4:34723550-34723569 MS.gene92623:CDS 45.0%
TGACCCTCCTTCCTAGTTAA+TGG + chr6.4:34722149-34722168 MS.gene92623:intron 45.0%
TGGTCTTCATATGGAATGGG+GGG + chr6.4:34722083-34722102 MS.gene92623:intron 45.0%
TGTCAGTGTTGTGTCTCTGT+CGG - chr6.4:34721113-34721132 None:intergenic 45.0%
TTCCATCAGGCAAGTAACGA+CGG - chr6.4:34723367-34723386 None:intergenic 45.0%
TTGTGGAAGACTCATGGAAG+AGG + chr6.4:34723539-34723558 MS.gene92623:CDS 45.0%
! CTTTTCATTTACAGGGGCCA+GGG - chr6.4:34722738-34722757 None:intergenic 45.0%
! TATGAGCGTGCACGGATTTT+GGG + chr6.4:34721685-34721704 MS.gene92623:CDS 45.0%
!! AACATGTGTTGGTGTCGTGT+TGG + chr6.4:34721193-34721212 MS.gene92623:intron 45.0%
!! AGGCTGATTTTCTTGTGAGG+CGG + chr6.4:34722607-34722626 MS.gene92623:intron 45.0%
!! AGTATGCTTAAAGAGTGCCC+CGG + chr6.4:34722534-34722553 MS.gene92623:intron 45.0%
!! CTGTCATGGTTGAGTTGGAA+GGG + chr6.4:34721850-34721869 MS.gene92623:CDS 45.0%
!! GGAAGGCTGATTTTCTTGTG+AGG + chr6.4:34722604-34722623 MS.gene92623:intron 45.0%
!! TCGCTTTGGAAACGAGTGAA+AGG + chr6.4:34723422-34723441 MS.gene92623:intron 45.0%
!! TGTCATGGTTGAGTTGGAAG+GGG + chr6.4:34721851-34721870 MS.gene92623:CDS 45.0%
!! TGTTGGTGTCGTGTTGGTAT+CGG + chr6.4:34721199-34721218 MS.gene92623:intron 45.0%
!! AAAATAATTAATAATCAATT+TGG - chr6.4:34723190-34723209 None:intergenic 5.0%
!!! AATAATAACAAATTTTAATA+TGG + chr6.4:34722582-34722601 MS.gene92623:intron 5.0%
!!! ATAATAACAAATTTTAATAT+GGG + chr6.4:34722583-34722602 MS.gene92623:intron 5.0%
!!! TATATTTTTATTTTGAAATA+TGG - chr6.4:34722241-34722260 None:intergenic 5.0%
AAGGTCCTTAACTAGTGCCC+CGG - chr6.4:34722428-34722447 None:intergenic 50.0%
AATGTTAACTAGTGCCCCCG+GGG + chr6.4:34722408-34722427 MS.gene92623:intron 50.0%
ACCGGACACACCTTTGATCA+GGG + chr6.4:34720744-34720763 MS.gene92623:intron 50.0%
ACGCCTTCGATCAGATGTGT+CGG + chr6.4:34721248-34721267 MS.gene92623:intron 50.0%
ACTAAAGCTCCCGCATATGC+AGG - chr6.4:34722300-34722319 None:intergenic 50.0%
ATCAGGCAAGTAACGACGGA+TGG - chr6.4:34723363-34723382 None:intergenic 50.0%
ATCCGTCGTTACTTGCCTGA+TGG + chr6.4:34723362-34723381 MS.gene92623:CDS 50.0%
CCTGGCCCCTGTAAATGAAA+AGG + chr6.4:34722736-34722755 MS.gene92623:intron 50.0%
CCTTCCAACTCAACCATGAC+AGG - chr6.4:34721852-34721871 None:intergenic 50.0%
CTAAAGCTCCCGCATATGCA+GGG - chr6.4:34722299-34722318 None:intergenic 50.0%
GGCGGGGTTGTCTTTAAATC+AGG + chr6.4:34722625-34722644 MS.gene92623:intron 50.0%
GTACCCGTGCTCTTCAAATC+AGG + chr6.4:34721707-34721726 MS.gene92623:CDS 50.0%
GTCGTTACTTGCCTGATGGA+AGG + chr6.4:34723366-34723385 MS.gene92623:CDS 50.0%
TCACCGACACATCTGATCGA+AGG - chr6.4:34721254-34721273 None:intergenic 50.0%
TCTTGTTAACAAGTGCCCCC+GGG - chr6.4:34722555-34722574 None:intergenic 50.0%
TGACACATACACGTCGACAC+CGG + chr6.4:34721128-34721147 MS.gene92623:intron 50.0%
TGACGAAGTATGAGCGTGCA+CGG + chr6.4:34721677-34721696 MS.gene92623:CDS 50.0%
TGCACCTGTCATGGTTGAGT+TGG + chr6.4:34721845-34721864 MS.gene92623:CDS 50.0%
TGGAGAGCCTATTGAAACCG+AGG + chr6.4:34721603-34721622 MS.gene92623:CDS 50.0%
! ACACCTTTGATCAGGGGTGT+TGG + chr6.4:34720751-34720770 MS.gene92623:intron 50.0%
! CCTTTTCATTTACAGGGGCC+AGG - chr6.4:34722739-34722758 None:intergenic 50.0%
! GTATGAGCGTGCACGGATTT+TGG + chr6.4:34721684-34721703 MS.gene92623:CDS 50.0%
! GTCTTGTTAACAAGTGCCCC+CGG - chr6.4:34722556-34722575 None:intergenic 50.0%
! TTGATAGGAAGGTGCAGAGG+TGG + chr6.4:34721546-34721565 MS.gene92623:intron 50.0%
!! CCTGTCATGGTTGAGTTGGA+AGG + chr6.4:34721849-34721868 MS.gene92623:CDS 50.0%
!! GCTGATTTTCTTGTGAGGCG+GGG + chr6.4:34722609-34722628 MS.gene92623:intron 50.0%
!! GGCTGATTTTCTTGTGAGGC+GGG + chr6.4:34722608-34722627 MS.gene92623:intron 50.0%
!! GTATGCTTAAAGAGTGCCCC+GGG + chr6.4:34722535-34722554 MS.gene92623:intron 50.0%
!! TATGCTTAAAGAGTGCCCCG+GGG + chr6.4:34722536-34722555 MS.gene92623:intron 50.0%
!! TGGTTGATAGGAAGGTGCAG+AGG + chr6.4:34721543-34721562 MS.gene92623:intron 50.0%
AGGTCCTTAACTAGTGCCCC+GGG - chr6.4:34722427-34722446 None:intergenic 55.0%
ATTTACAGGGGCCAGGGCAA+AGG - chr6.4:34722732-34722751 None:intergenic 55.0%
CACCGGACACACCTTTGATC+AGG + chr6.4:34720743-34720762 MS.gene92623:intron 55.0%
CCGGACACACCTTTGATCAG+GGG + chr6.4:34720745-34720764 MS.gene92623:intron 55.0%
CTTGTTAACAAGTGCCCCCG+GGG - chr6.4:34722554-34722573 None:intergenic 55.0%
GCACCAACACCCCTGATCAA+AGG - chr6.4:34720757-34720776 None:intergenic 55.0%
GTCAGTGTCGTGTCTGGTGT+CGG - chr6.4:34720656-34720675 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + chr6.4:34722304-34722323 MS.gene92623:intron 55.0%
! CATCTGATCGAAGGCGTGTC+TGG - chr6.4:34721245-34721264 None:intergenic 55.0%
! CCCCTGATCAAAGGTGTGTC+CGG - chr6.4:34720748-34720767 None:intergenic 55.0%
!! ATGCTTAAAGAGTGCCCCGG+GGG + chr6.4:34722537-34722556 MS.gene92623:intron 55.0%
!! CATGTGTTGGTGTCGGACAC+CGG + chr6.4:34720726-34720745 MS.gene92623:intron 55.0%
AGGGGAGACTGACCCACTTG+AGG + chr6.4:34721869-34721888 MS.gene92623:CDS 60.0%
CATATGCAGGGTCCGGGAAG+GGG - chr6.4:34722287-34722306 None:intergenic 60.0%
CGACACTGACACGCCAACAC+CGG + chr6.4:34720666-34720685 MS.gene92623:intron 60.0%
CTTCCCGGACCCTGCATATG+CGG + chr6.4:34722287-34722306 MS.gene92623:intron 60.0%
GCATATGCAGGGTCCGGGAA+GGG - chr6.4:34722288-34722307 None:intergenic 60.0%
GGTCCTTAACTAGTGCCCCG+GGG - chr6.4:34722426-34722445 None:intergenic 60.0%
GTCCTTAACTAGTGCCCCGG+GGG - chr6.4:34722425-34722444 None:intergenic 60.0%
TGGCGTGTCAGTGTCGTGTC+TGG - chr6.4:34720662-34720681 None:intergenic 60.0%
TTCCCGGACCCTGCATATGC+GGG + chr6.4:34722288-34722307 MS.gene92623:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + chr6.4:34722272-34722291 MS.gene92623:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + chr6.4:34722305-34722324 MS.gene92623:intron 60.0%
!! CAGGGGTGTTGGTGCTACAG+CGG + chr6.4:34720762-34720781 MS.gene92623:intron 60.0%
CGCATATGCAGGGTCCGGGA+AGG - chr6.4:34722289-34722308 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG - chr6.4:34722274-34722293 None:intergenic 65.0%
CTCCCGCATATGCAGGGTCC+GGG - chr6.4:34722293-34722312 None:intergenic 65.0%
GCTCCCGCATATGCAGGGTC+CGG - chr6.4:34722294-34722313 None:intergenic 65.0%
! TGCCCCCGGGGCACTAGTTA+AGG + chr6.4:34722420-34722439 MS.gene92623:intron 65.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 34720286 34723579 34720286 ID=MS.gene92623
chr6.4 mRNA 34720286 34723579 34720286 ID=MS.gene92623.t1;Parent=MS.gene92623
chr6.4 exon 34720286 34720320 34720286 ID=MS.gene92623.t1.exon1;Parent=MS.gene92623.t1
chr6.4 CDS 34720286 34720320 34720286 ID=cds.MS.gene92623.t1;Parent=MS.gene92623.t1
chr6.4 exon 34721428 34721461 34721428 ID=MS.gene92623.t1.exon2;Parent=MS.gene92623.t1
chr6.4 CDS 34721428 34721461 34721428 ID=cds.MS.gene92623.t1;Parent=MS.gene92623.t1
chr6.4 exon 34721553 34721728 34721553 ID=MS.gene92623.t1.exon3;Parent=MS.gene92623.t1
chr6.4 CDS 34721553 34721728 34721553 ID=cds.MS.gene92623.t1;Parent=MS.gene92623.t1
chr6.4 exon 34721839 34721890 34721839 ID=MS.gene92623.t1.exon4;Parent=MS.gene92623.t1
chr6.4 CDS 34721839 34721890 34721839 ID=cds.MS.gene92623.t1;Parent=MS.gene92623.t1
chr6.4 exon 34723320 34723387 34723320 ID=MS.gene92623.t1.exon5;Parent=MS.gene92623.t1
chr6.4 CDS 34723320 34723387 34723320 ID=cds.MS.gene92623.t1;Parent=MS.gene92623.t1
chr6.4 exon 34723510 34723579 34723510 ID=MS.gene92623.t1.exon6;Parent=MS.gene92623.t1
chr6.4 CDS 34723510 34723579 34723510 ID=cds.MS.gene92623.t1;Parent=MS.gene92623.t1
Gene Sequence

>MS.gene92623

ATGGCCGACGACGACTATAATGACTTGGACATCGGGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTACCACACTCACCAAATTAGGGTTTTTCTCCAATTCAATTTTCATTTTTTAAACACATAATTCCTGATATTTTTTATTATTTTTGATTAATTGAAGCCACGAATATTTGTTAAGCCAGGCTCATTTTTATGTTCTGTTTGTGAAAACGAAAGCAAAATGTAACCTTTTTGTTTTTATTTCCTATTATATTCATGTTTTTAAGCTTGTTTTGCACTGTGGGTATGTTTGAATTGGCTTATTTGAGTTTATATAGTGGCATAAGCAGTTGTGAGTTATGAAGCACCGACACCAGACACGACACTGACACGCCAACACCGGTAATAACATGAGTAAGTGAATTTTTTGAAGGTAATCACATGTGTTGGTGTCGGACACCGGACACACCTTTGATCAGGGGTGTTGGTGCTACAGCGGTTTTAAGACTTTTTGGAAGAATTTATGAAAATAGCTTATGACATGATAAAAACTTTTTTTTTTTTGTAAGTTCTCCAGGATAGCTTGTAGAAATAGCTTATAGCTTATACAAAAACAATATAACATCATTTTATTTTTTGTTATAAAAATAACTTATACATAAGCGTTTATCATGATAAAGACTTATGTTATAAGCTGCTAATTAGACTGTTTAGCCAAACATGGTCTAAGTCTATATACATGTCTTTAAAGATTTAAGGTTGTCTTGCACTAAGTTTATTTCAAATATATACTAGAATATAATTGACATATGAACTATGAAGCACCGACAGAGACACAACACTGACACATACACGTCGACACCGGTAGTAATTTGAAAAAAAAAAAAGTGACAGAATTGAATGTAATAACATGTGTTGGTGTCGTGTTGGTATCGGACACAGACACGTGTCTGACACCAGACACGCCTTCGATCAGATGTGTCGGTGAGCCTTTGAAAGAACAATTTTTCCTAAAAAAGATCAGACAGTTTAAAAGGAATGGAGGGAGTATGATTATGCAGTTGCCAGTTAATGAGATATGTGTTTTGTAGTATGTTACTAGTGGAACATTTCTCTCATAACAAATTTGAATGGTGATGCAGATATGAAGATGAGCCAGTAGATCCTGAGATTGAAGTAAGGAATTCTATACACACTGACTAACCCAAACATATATGAATATTAAGGAATACACTGTTGATGAATTTTTTAAATTATTGGTTGATAGGAAGGTGCAGAGGTGGATGCAGATGACAACGACAACAATGATGAGATGGCTGGAGAGCCTATTGAAACCGAGGAAAAGGAACAAGAAGAGCCAACAGAAAGACCTCGAAAGACATCGAAATACATGACGAAGTATGAGCGTGCACGGATTTTGGGTACCCGTGCTCTTCAAATCAGGTATTTTTTTTTTTTTTTTAGTTTTGATCTTTGTGAAGTTAAAATTTTGTTCTGGTGAATGATTCCCTGTAAATGTTTTAACATGTTGTCTTGCCTTTTGGTTGATGAAGTATGAATGCACCTGTCATGGTTGAGTTGGAAGGGGAGACTGACCCACTTGAGGTACGAGAACCTTTTCTTCTGTTAACTCATTTGATGTTTCATTTCACATAGTGTTGCTGCATTTGAGTATGTCTGAAGTGTTATTGAAAATTGTGCTTGCCTATCTTGTTATGCTAGTATCTAATTTCTTTTGTTTTTTTAACAAAAACTAGTATCTGATCTAATTTCAAAACATATGTCGGTATAGACCAGTGGTCTTCATATGGAATGGGGGGAGATTTCTTTAAGACACTCCCCAACTTCGATCATTCACTTTGGTGACCCTCCTTCCTAGTTAATGGAGTCCTTGACTCTAACTATGGCTGTGGAGATTTTATTTCTCTTTAGTTTCTTATCAGTTACCTGATCCATATTTCAAAATAAAAATATACAAATATACACCAAATGGTGGGACCCCTTCCCGGACCCTGCATATGCGGGAGCTTTAGTGCACCGGGTTGCCCTTTTTTTTTTTACTGCTAATGTATGGGCTATTCGTATGAAATCTCTTTCCATATTTTCATATTACAATAAGGGAAATGTTAACTAGTGCCCCCGGGGCACTAGTTAAGGACCTTAAATGGTAACTTTTTATGGAAGTATGTGTAATCAGTGGATTGGAAATTGAAAACTTTGACATTTTTAAAGAATAATTACTTAATTTAGTATGCTTAAAGAGTGCCCCGGGGGCACTTGTTAACAAGACCCTTACAATAATAACAAATTTTAATATGGGAAGGCTGATTTTCTTGTGAGGCGGGGTTGTCTTTAAATCAGGTCTTTTATCATTCTCTTATTCTTGCCTATAATTTTGTATGTTTAGCTCATAGCAAAGTTTCGTTTCTTATAGTTCATCTTTCCTTTGCCCTGGCCCCTGTAAATGAAAAGGTTCCAGGCTTTGGACATTAAAACTTAAACATTTACTTCGTGGTTCATTGAAGAATTGATGCTCTTTCTAATGTTGAAACTTAAAAGATTATAATGTTGATCGAAAAGAACTGGTTACTTCTATTATGTTTGGTCCGTTGACTTCAAAACATATTTATACTTTTGACATTGAACGTTGATTCTGATAAACCTTTGAATAATAAGATTGTAAATTTCTCCTTTTGATGGCCAATACCATATAGATAAATGATATTTGAACAACCATTTTTCGTCAATTTTCTCTCTCATGCTCACATTATCTTTTTACTTTCTCTCTCTTTTGCTTTGGTTTTTGTGCCAATACCTAATTTTCTTTGTAAAATTTTGATTGTTTCAAAAGTTGTCATATAAGTAAATGTTCAAATAACACAACTCTACTATATATCAATTCCAAATTGATTATTAATTATTTTATATAGTTTCAAATTCTTTAGCTTGCATTGGATTTATGTTCATGTATCATGTAACCATTTGATACATTTTGGACACAAATGTCTGATATCTTGTTCACTCAACTTCACAGATTGCCATGAAAGAGCTTCGAGAGAAAAAGATACCCTTTACCATCCGTCGTTACTTGCCTGATGGAAGGTAATTACTGTGTTTAATTCCTTTTTTTTTTTTTTCGCTTTGGAAACGAGTGAAAGGTATGTTAAGATTAAGCTGAATTTTCCTTCATGTCATGTGTTTTCTGTTTTTGCAAAATTGTGCAGCTATGAAGATTGGGGAGTTGATGAATTGATTGTGGAAGACTCATGGAAGAGGCAAATTGGTGGTGATTGA

Protein sequence

>MS.gene92623.t1

MADDDYNDLDIGYEDEPVDPEIEEGAEVDADDNDNNDEMAGEPIETEEKEQEEPTERPRKTSKYMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELREKKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQIGGD