Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014162.t1 | XP_003625191.1 | 100 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 4.00E-55 | 224.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014162.t1 | Q9FJ98 | 67.8 | 146 | 44 | 2 | 1 | 145 | 1 | 144 | 1.2e-47 | 190.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014162.t1 | A2Q3E0 | 100.0 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 2.9e-55 | 224.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014162.t1 | MTR_7g092450 | 100.000 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 2.53e-100 | 284 |
| MS.gene014162.t1 | MTR_0019s0160 | 83.448 | 145 | 23 | 1 | 1 | 145 | 1 | 144 | 5.71e-73 | 215 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014162.t1 | AT5G51940 | 79.452 | 146 | 27 | 2 | 1 | 145 | 1 | 144 | 1.97e-70 | 208 |
| MS.gene014162.t1 | AT2G04630 | 78.082 | 146 | 29 | 2 | 1 | 145 | 1 | 144 | 6.51e-69 | 204 |
Find 54 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGTATTTGGAAGTTCTTC+TGG | 0.183169 | 7.4:+16377277 | None:intergenic |
| CTCATACTTAGTCATGTATT+TGG | 0.209600 | 7.4:+16377265 | None:intergenic |
| CCGCTCTCGTAGCTCCTTCA+TGG | 0.261897 | 7.4:+16374681 | None:intergenic |
| AAGTATGGTACCTCAATTTC+AGG | 0.283991 | 7.4:+16377463 | None:intergenic |
| AGGTCATCATTCTTGTTATC+AGG | 0.290460 | 7.4:+16377362 | None:intergenic |
| ACCACCCACTTGTCTCTTCC+AGG | 0.359364 | 7.4:+16374459 | None:intergenic |
| AAGTAGCGACGGATGGTAAA+AGG | 0.371530 | 7.4:+16374652 | None:intergenic |
| GTACTCGCGCTCTTCAAATC+AGG | 0.398664 | 7.4:-16377226 | MS.gene014162:intron |
| AACTCTTCAGATTGCCATGA+AGG | 0.418174 | 7.4:-16374695 | MS.gene014162:intron |
| ATTGTCCAGCTATGAAGATT+GGG | 0.418900 | 7.4:-16374509 | MS.gene014162:intron |
| ACCAATTGAAACTGAGGAAA+AGG | 0.424157 | 7.4:-16377324 | MS.gene014162:CDS |
| GTTCTTCTGGGACGTTCAAC+CGG | 0.431909 | 7.4:+16377290 | None:intergenic |
| TATGAGCGTGCTAGGATTCT+CGG | 0.433316 | 7.4:-16377248 | MS.gene014162:CDS |
| AATTGTCCAGCTATGAAGAT+TGG | 0.435283 | 7.4:-16374510 | MS.gene014162:intron |
| ACCTGTCATGGTTGAGTTGG+AGG | 0.445018 | 7.4:-16375760 | MS.gene014162:CDS |
| AGCTGATTGTGGAAGACTCC+TGG | 0.445700 | 7.4:-16374477 | MS.gene014162:CDS |
| GGTACCTCAATTTCAGGCTC+TGG | 0.453336 | 7.4:+16377469 | None:intergenic |
| ATGTATTTGGAAGTTCTTCT+GGG | 0.453467 | 7.4:+16377278 | None:intergenic |
| AGTAGTATTTACCTTCCATC+AGG | 0.479574 | 7.4:+16374628 | None:intergenic |
| GCCACCAGAGCCTGAAATTG+AGG | 0.481155 | 7.4:-16377473 | MS.gene014162:intron |
| CCCTCCAACTCAACCATGAC+AGG | 0.481823 | 7.4:+16375759 | None:intergenic |
| TTCGTAGTCATCGTCGGCCA+TGG | 0.482815 | 7.4:+16377610 | None:intergenic |
| TTGGTTCTCCTTCTGCATCT+AGG | 0.484900 | 7.4:+16377342 | None:intergenic |
| AATGGTTAAATTACCTCAAG+TGG | 0.493654 | 7.4:+16375726 | None:intergenic |
| TGTGCAGGAGGGTGCAGAGG+AGG | 0.495039 | 7.4:-16377390 | MS.gene014162:intron |
| GCAGGAGGGTGCAGAGGAGG+AGG | 0.495135 | 7.4:-16377387 | MS.gene014162:intron |
| CCTGTCATGGTTGAGTTGGA+GGG | 0.500999 | 7.4:-16375759 | MS.gene014162:CDS |
| ACCTCAATTTCAGGCTCTGG+TGG | 0.507724 | 7.4:+16377472 | None:intergenic |
| GGGAGTTGATGAGCTGATTG+TGG | 0.508386 | 7.4:-16374488 | MS.gene014162:CDS |
| TGACTAAGTATGAGCGTGCT+AGG | 0.521995 | 7.4:-16377256 | MS.gene014162:CDS |
| ATCCGTCGCTACTTGCCTGA+TGG | 0.540830 | 7.4:-16374643 | MS.gene014162:CDS |
| TGCACCTGTCATGGTTGAGT+TGG | 0.547769 | 7.4:-16375763 | MS.gene014162:CDS |
| TTCCATCAGGCAAGTAGCGA+CGG | 0.559984 | 7.4:+16374641 | None:intergenic |
| GTCGCTACTTGCCTGATGGA+AGG | 0.581718 | 7.4:-16374639 | MS.gene014162:intron |
| GGAAAAGGAAGATGCTGCAC+CGG | 0.581748 | 7.4:-16377309 | MS.gene014162:CDS |
| GACTCCTGGAAGAGACAAGT+GGG | 0.586530 | 7.4:-16374463 | MS.gene014162:CDS |
| AGGAGAACCAATTGAAACTG+AGG | 0.593065 | 7.4:-16377330 | MS.gene014162:CDS |
| CAGTATGAATGCACCTGTCA+TGG | 0.596445 | 7.4:-16375772 | MS.gene014162:CDS |
| ATCAGGCAAGTAGCGACGGA+TGG | 0.606515 | 7.4:+16374645 | None:intergenic |
| CTGTCATGGTTGAGTTGGAG+GGG | 0.614709 | 7.4:-16375758 | MS.gene014162:CDS |
| AATGATGACCTAGATGCAGA+AGG | 0.620982 | 7.4:-16377350 | MS.gene014162:CDS |
| TGTCATGGTTGAGTTGGAGG+GGG | 0.622677 | 7.4:-16375757 | MS.gene014162:CDS |
| GACTACGAAGATATCGACAT+GGG | 0.632471 | 7.4:-16377596 | MS.gene014162:CDS |
| ATGGTTAAATTACCTCAAGT+GGG | 0.636541 | 7.4:+16375727 | None:intergenic |
| AGACTCCTGGAAGAGACAAG+TGG | 0.644950 | 7.4:-16374464 | MS.gene014162:CDS |
| TTGTCCAGCTATGAAGATTG+GGG | 0.646097 | 7.4:-16374508 | MS.gene014162:intron |
| GCATGTGCAGGAGGGTGCAG+AGG | 0.649814 | 7.4:-16377393 | MS.gene014162:intron |
| GATATCTTCGTAGTCATCGT+CGG | 0.659789 | 7.4:+16377604 | None:intergenic |
| TGACTACGAAGATATCGACA+TGG | 0.677574 | 7.4:-16377597 | MS.gene014162:CDS |
| ATTAAAACGATGCAGGTACG+AGG | 0.688503 | 7.4:-16377500 | MS.gene014162:intron |
| CCATGAAGGAGCTACGAGAG+CGG | 0.693186 | 7.4:-16374681 | MS.gene014162:CDS |
| AAAACGATGCAGGTACGAGG+AGG | 0.694919 | 7.4:-16377497 | MS.gene014162:intron |
| TCCTGGAAGAGACAAGTGGG+TGG | 0.726072 | 7.4:-16374460 | MS.gene014162:CDS |
| ACTACGAAGATATCGACATG+GGG | 0.760905 | 7.4:-16377595 | MS.gene014162:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CACATAATTAATAATTAATT+AGG | - | chr7.4:16374515-16374534 | MS.gene014162:intron | 10.0% |
| !! | TAATTATTAATTATGTGAGT+GGG | + | chr7.4:16374512-16374531 | None:intergenic | 15.0% |
| !! | TTAATTATTAATTATGTGAG+TGG | + | chr7.4:16374513-16374532 | None:intergenic | 15.0% |
| !!! | AATAGGCTTATTTTTATATT+AGG | - | chr7.4:16376739-16376758 | MS.gene014162:intron | 15.0% |
| !!! | ATGATTGTTTAAGATTTTAA+AGG | + | chr7.4:16376221-16376240 | None:intergenic | 15.0% |
| !!! | CTTCTTTTTTTCTTTAATTA+GGG | - | chr7.4:16374621-16374640 | MS.gene014162:intron | 15.0% |
| !!! | TCTTCTTTTTTTCTTTAATT+AGG | - | chr7.4:16374620-16374639 | MS.gene014162:intron | 15.0% |
| !!! | TTTTAAAAAAGTTTCATCAA+TGG | + | chr7.4:16376951-16376970 | None:intergenic | 15.0% |
| !! | AAAGAAAAAAAGAAGAAGTA+TGG | + | chr7.4:16374616-16374635 | None:intergenic | 20.0% |
| !! | AAATTGAACTATGTTAACAT+GGG | - | chr7.4:16375171-16375190 | MS.gene014162:intron | 20.0% |
| !! | AATAAGCAAAATCATACATA+GGG | + | chr7.4:16374881-16374900 | None:intergenic | 20.0% |
| !! | ATTTATGTAACATGCAATAA+AGG | + | chr7.4:16375792-16375811 | None:intergenic | 20.0% |
| !! | TAAATTGAACTATGTTAACA+TGG | - | chr7.4:16375170-16375189 | MS.gene014162:intron | 20.0% |
| !! | TACTGTTTGTTTATTAAGTT+GGG | - | chr7.4:16377452-16377471 | MS.gene014162:intron | 20.0% |
| !! | TGAAAATTATAGCATAAACT+GGG | - | chr7.4:16376885-16376904 | MS.gene014162:intron | 20.0% |
| !! | TTAAATCCTAAATTAACATG+TGG | + | chr7.4:16377052-16377071 | None:intergenic | 20.0% |
| !! | TTAACATATACTTGTGTAAT+AGG | - | chr7.4:16375201-16375220 | MS.gene014162:intron | 20.0% |
| !! | TTAGGATTTAAATATTCTCA+TGG | - | chr7.4:16377061-16377080 | MS.gene014162:intron | 20.0% |
| !! | TTGAAAATTATAGCATAAAC+TGG | - | chr7.4:16376884-16376903 | MS.gene014162:intron | 20.0% |
| !! | TTTCTATATTTCAATTGAGT+GGG | + | chr7.4:16376470-16376489 | None:intergenic | 20.0% |
| !!! | TTTTCTATATTTCAATTGAG+TGG | + | chr7.4:16376471-16376490 | None:intergenic | 20.0% |
| ! | AAACAACTTATCAAAAGAGT+AGG | - | chr7.4:16375874-16375893 | MS.gene014162:intron | 25.0% |
| ! | AAGTTGTCAAACAAAATTTG+AGG | - | chr7.4:16375492-16375511 | MS.gene014162:intron | 25.0% |
| ! | ACATACATGTATAGTAACAA+GGG | - | chr7.4:16376649-16376668 | MS.gene014162:intron | 25.0% |
| ! | AGATCAATAAAGTAGAAGTA+AGG | + | chr7.4:16376512-16376531 | None:intergenic | 25.0% |
| ! | CCAACACAACAAAAAAAATA+TGG | + | chr7.4:16377267-16377286 | None:intergenic | 25.0% |
| ! | CTAACAAAAAGTTCTTTCAA+CGG | + | chr7.4:16376198-16376217 | None:intergenic | 25.0% |
| ! | CTACTGTTTGTTTATTAAGT+TGG | - | chr7.4:16377451-16377470 | MS.gene014162:intron | 25.0% |
| ! | GAATAAGCAAAATCATACAT+AGG | + | chr7.4:16374882-16374901 | None:intergenic | 25.0% |
| ! | TGATAATTAAGTTCTTGTTG+AGG | - | chr7.4:16375385-16375404 | MS.gene014162:intron | 25.0% |
| ! | TTCTATATTTCAATTGAGTG+GGG | + | chr7.4:16376469-16376488 | None:intergenic | 25.0% |
| !! | AACTTTTATGTTGGAGAAAA+TGG | + | chr7.4:16375411-16375430 | None:intergenic | 25.0% |
| !! | ACTCTTTTGATAAGTTGTTT+GGG | + | chr7.4:16375874-16375893 | None:intergenic | 25.0% |
| !! | GTTTTACATAATCCATTGAA+AGG | - | chr7.4:16375036-16375055 | MS.gene014162:intron | 25.0% |
| !! | TACATAAATTGACAAGCTTT+TGG | - | chr7.4:16375803-16375822 | MS.gene014162:intron | 25.0% |
| !! | TACTCTTTTGATAAGTTGTT+TGG | + | chr7.4:16375875-16375894 | None:intergenic | 25.0% |
| !! | TGCTATAATTTTCAAAGTTC+AGG | + | chr7.4:16376879-16376898 | None:intergenic | 25.0% |
| !! | TGTATGTTCTAAATAGTGTA+AGG | + | chr7.4:16375143-16375162 | None:intergenic | 25.0% |
| !! | TTATGTCGTACTTATCATTT+TGG | - | chr7.4:16377527-16377546 | MS.gene014162:intron | 25.0% |
| !!! | AAAAATAAGCCTATTTCTGA+TGG | + | chr7.4:16376734-16376753 | None:intergenic | 25.0% |
| !!! | CCATATTTTTTTTGTTGTGT+TGG | - | chr7.4:16377264-16377283 | MS.gene014162:CDS | 25.0% |
| !!! | GTTTTATTTTTAGAGTCCTT+TGG | - | chr7.4:16377100-16377119 | MS.gene014162:intron | 25.0% |
| !!! | TTCAATGGATTATGTAAAAC+AGG | + | chr7.4:16375036-16375055 | None:intergenic | 25.0% |
| AATGGTTAAATTACCTCAAG+TGG | + | chr7.4:16376338-16376357 | None:intergenic | 30.0% | |
| ACAAGAAAGACAACAAGTTA+TGG | + | chr7.4:16376261-16376280 | None:intergenic | 30.0% | |
| ACATGTATGTCAGCATAAAT+TGG | + | chr7.4:16376639-16376658 | None:intergenic | 30.0% | |
| ACTGATACAAAATGAAACCA+TGG | + | chr7.4:16377295-16377314 | None:intergenic | 30.0% | |
| ATAACATGTAGCAATACCAA+AGG | + | chr7.4:16377119-16377138 | None:intergenic | 30.0% | |
| ATACAAACAAGATCAACATC+TGG | + | chr7.4:16376579-16376598 | None:intergenic | 30.0% | |
| ATCTGACCACATGTTAATTT+AGG | - | chr7.4:16377043-16377062 | MS.gene014162:intron | 30.0% | |
| ATCTTAAACAATCATACTGC+AGG | - | chr7.4:16376226-16376245 | MS.gene014162:intron | 30.0% | |
| ATGGTTAAATTACCTCAAGT+GGG | + | chr7.4:16376337-16376356 | None:intergenic | 30.0% | |
| ATGTATTTGGAAGTTCTTCT+GGG | + | chr7.4:16374786-16374805 | None:intergenic | 30.0% | |
| ATTGCAATATGAACCTTACA+AGG | + | chr7.4:16375849-16375868 | None:intergenic | 30.0% | |
| CTCATACTTAGTCATGTATT+TGG | + | chr7.4:16374799-16374818 | None:intergenic | 30.0% | |
| CTGAACAAATGAACTATAAC+AGG | + | chr7.4:16376776-16376795 | None:intergenic | 30.0% | |
| GACATACATGTATAGTAACA+AGG | - | chr7.4:16376648-16376667 | MS.gene014162:intron | 30.0% | |
| GATAAGTACGACATAAAAGA+TGG | + | chr7.4:16377523-16377542 | None:intergenic | 30.0% | |
| GATCAAATTCCATCAGAAAT+AGG | - | chr7.4:16376722-16376741 | MS.gene014162:intron | 30.0% | |
| TAAGAAATCTACATACGTGT+CGG | - | chr7.4:16375347-16375366 | MS.gene014162:intron | 30.0% | |
| TGATCTCGTCTTCAAAATAT+AGG | + | chr7.4:16376707-16376726 | None:intergenic | 30.0% | |
| TTATGTAAAACAGGACAAAC+TGG | + | chr7.4:16375027-16375046 | None:intergenic | 30.0% | |
| ! | AAGCTTTTGGACAACAAAAT+AGG | - | chr7.4:16375816-16375835 | MS.gene014162:intron | 30.0% |
| ! | ATGGATGGTTCTATATGTTT+GGG | + | chr7.4:16375102-16375121 | None:intergenic | 30.0% |
| ! | CTCTTTTGATAAGTTGTTTG+GGG | + | chr7.4:16375873-16375892 | None:intergenic | 30.0% |
| ! | CTTTCTCCCTTTAAAGAAAA+AGG | - | chr7.4:16376852-16376871 | MS.gene014162:intron | 30.0% |
| ! | TATGCTTTGATCATTGACTA+TGG | - | chr7.4:16376596-16376615 | MS.gene014162:intron | 30.0% |
| ! | TCAGGACCTTTTTCTTTAAA+GGG | + | chr7.4:16376861-16376880 | None:intergenic | 30.0% |
| ! | TTCAGGACCTTTTTCTTTAA+AGG | + | chr7.4:16376862-16376881 | None:intergenic | 30.0% |
| ! | TTGCAACTTTTATTGAAGTC+TGG | + | chr7.4:16375926-16375945 | None:intergenic | 30.0% |
| AAAGTACAAGCTATGGACAA+TGG | + | chr7.4:16376819-16376838 | None:intergenic | 35.0% | |
| AAGTACGACATAAAAGATGG+AGG | + | chr7.4:16377520-16377539 | None:intergenic | 35.0% | |
| AAGTATGGTACCTCAATTTC+AGG | + | chr7.4:16374601-16374620 | None:intergenic | 35.0% | |
| AAGTGCAATTGTGCATTACA+TGG | + | chr7.4:16376553-16376572 | None:intergenic | 35.0% | |
| AATTGTCCAGCTATGAAGAT+TGG | - | chr7.4:16377551-16377570 | MS.gene014162:intron | 35.0% | |
| ACCAATTGAAACTGAGGAAA+AGG | - | chr7.4:16374737-16374756 | MS.gene014162:intron | 35.0% | |
| ACTCATGATTAAAACGATGC+AGG | - | chr7.4:16374554-16374573 | MS.gene014162:intron | 35.0% | |
| AGCTATGGAATCTTGATCAA+TGG | - | chr7.4:16374982-16375001 | MS.gene014162:intron | 35.0% | |
| AGCTGTAAAAACGAATACTC+AGG | + | chr7.4:16375759-16375778 | None:intergenic | 35.0% | |
| AGGGGAGAATTTAAACCAAA+CGG | + | chr7.4:16376110-16376129 | None:intergenic | 35.0% | |
| AGTAGTATTTACCTTCCATC+AGG | + | chr7.4:16377436-16377455 | None:intergenic | 35.0% | |
| ATAGTGTAAGGATGAGAAAG+AGG | + | chr7.4:16375131-16375150 | None:intergenic | 35.0% | |
| ATTGTCCAGCTATGAAGATT+GGG | - | chr7.4:16377552-16377571 | MS.gene014162:intron | 35.0% | |
| CAAAAATCCAGAATAGATGC+TGG | - | chr7.4:16375668-16375687 | MS.gene014162:intron | 35.0% | |
| CAAACATATAGAACCATCCA+TGG | - | chr7.4:16375101-16375120 | MS.gene014162:intron | 35.0% | |
| CAGTACTGTAACAAGAAAGA+AGG | + | chr7.4:16376382-16376401 | None:intergenic | 35.0% | |
| CATGGTACACTACTTAATGA+AGG | + | chr7.4:16376535-16376554 | None:intergenic | 35.0% | |
| CATGTATTTGGAAGTTCTTC+TGG | + | chr7.4:16374787-16374806 | None:intergenic | 35.0% | |
| CATTTGTTCAGCTTGTAGAT+TGG | - | chr7.4:16376785-16376804 | MS.gene014162:intron | 35.0% | |
| GCATAGTAGTGTATTGTACT+GGG | + | chr7.4:16376034-16376053 | None:intergenic | 35.0% | |
| GCTATGGAATCTTGATCAAT+GGG | - | chr7.4:16374983-16375002 | MS.gene014162:intron | 35.0% | |
| TCAAGATTCCATAGCTAACA+TGG | + | chr7.4:16374978-16374997 | None:intergenic | 35.0% | |
| TCCATTGAAAGGTAACCAAA+AGG | - | chr7.4:16375047-16375066 | MS.gene014162:intron | 35.0% | |
| TCTATATGTTTGGGTGGTTA+GGG | + | chr7.4:16375093-16375112 | None:intergenic | 35.0% | |
| TGAATCGCAAAGAGATCAAA+TGG | + | chr7.4:16376356-16376375 | None:intergenic | 35.0% | |
| TGCATAGTAGTGTATTGTAC+TGG | + | chr7.4:16376035-16376054 | None:intergenic | 35.0% | |
| TTCTATATGTTTGGGTGGTT+AGG | + | chr7.4:16375094-16375113 | None:intergenic | 35.0% | |
| TTTCAAGAAGCTTGACAGTT+AGG | + | chr7.4:16375968-16375987 | None:intergenic | 35.0% | |
| ! | AGGTCATCATTCTTGTTATC+AGG | + | chr7.4:16374702-16374721 | None:intergenic | 35.0% |
| ! | AGTTGGGTACTTCTTTTTCT+TGG | - | chr7.4:16377468-16377487 | MS.gene014162:intron | 35.0% |
| ! | CATGGATGGTTCTATATGTT+TGG | + | chr7.4:16375103-16375122 | None:intergenic | 35.0% |
| ! | GGAGTTGACAACTTTTATGT+TGG | + | chr7.4:16375420-16375439 | None:intergenic | 35.0% |
| ! | GGTACTTCTTTTTCTTGGAT+GGG | - | chr7.4:16377473-16377492 | MS.gene014162:intron | 35.0% |
| ! | TCCTTTTCCTCAGTTTCAAT+TGG | + | chr7.4:16374741-16374760 | None:intergenic | 35.0% |
| ! | TTTTATTGAAGTCTGGTGCT+TGG | + | chr7.4:16375919-16375938 | None:intergenic | 35.0% |
| !! | AAAATTTGAGGAGTGCTGAA+AGG | - | chr7.4:16375504-16375523 | MS.gene014162:intron | 35.0% |
| AACTCTTCAGATTGCCATGA+AGG | - | chr7.4:16377366-16377385 | MS.gene014162:CDS | 40.0% | |
| AATGATGACCTAGATGCAGA+AGG | - | chr7.4:16374711-16374730 | MS.gene014162:intron | 40.0% | |
| ACAATGACTAAATGCCCGTT+TGG | - | chr7.4:16376092-16376111 | MS.gene014162:intron | 40.0% | |
| ACACAGAAGCTGAAATCCTA+TGG | + | chr7.4:16375560-16375579 | None:intergenic | 40.0% | |
| ACTACGAAGATATCGACATG+GGG | - | chr7.4:16374466-16374485 | MS.gene014162:CDS | 40.0% | |
| ACTCCAGTGGTTTCTAATCT+AGG | + | chr7.4:16375593-16375612 | None:intergenic | 40.0% | |
| AGGAGAACCAATTGAAACTG+AGG | - | chr7.4:16374731-16374750 | MS.gene014162:intron | 40.0% | |
| ATGGCTGTGATCTATGTTCA+CGG | + | chr7.4:16375541-16375560 | None:intergenic | 40.0% | |
| ATGGTTCAACTGAAATCCAC+GGG | + | chr7.4:16374959-16374978 | None:intergenic | 40.0% | |
| ATTAAAACGATGCAGGTACG+AGG | - | chr7.4:16374561-16374580 | MS.gene014162:intron | 40.0% | |
| CAGTTGAACCATGTTAGCTA+TGG | - | chr7.4:16374967-16374986 | MS.gene014162:intron | 40.0% | |
| CATGGTTCAACTGAAATCCA+CGG | + | chr7.4:16374960-16374979 | None:intergenic | 40.0% | |
| CGAATACTCAGGTATCTTAG+AGG | + | chr7.4:16375748-16375767 | None:intergenic | 40.0% | |
| GACTACGAAGATATCGACAT+GGG | - | chr7.4:16374465-16374484 | MS.gene014162:CDS | 40.0% | |
| GAGGATTGCATTATGAGACA+AGG | - | chr7.4:16375460-16375479 | MS.gene014162:intron | 40.0% | |
| GATATCTTCGTAGTCATCGT+CGG | + | chr7.4:16374460-16374479 | None:intergenic | 40.0% | |
| GCTTGACAGTTAGGTTAAGT+TGG | + | chr7.4:16375959-16375978 | None:intergenic | 40.0% | |
| GGGGAGAATTTAAACCAAAC+GGG | + | chr7.4:16376109-16376128 | None:intergenic | 40.0% | |
| GTAAAACAGGACAAACTGGA+GGG | + | chr7.4:16375023-16375042 | None:intergenic | 40.0% | |
| TACAAGCTATGGACAATGGT+TGG | + | chr7.4:16376815-16376834 | None:intergenic | 40.0% | |
| TCTCATCCAACGAAAATTCG+TGG | + | chr7.4:16375257-16375276 | None:intergenic | 40.0% | |
| TGAACATAGATCACAGCCAT+AGG | - | chr7.4:16375541-16375560 | MS.gene014162:intron | 40.0% | |
| TGACTACGAAGATATCGACA+TGG | - | chr7.4:16374464-16374483 | MS.gene014162:CDS | 40.0% | |
| TGGACAACAAAATAGGTTGC+AGG | - | chr7.4:16375823-16375842 | MS.gene014162:intron | 40.0% | |
| TGTAAAACAGGACAAACTGG+AGG | + | chr7.4:16375024-16375043 | None:intergenic | 40.0% | |
| TTCATGGCAATCTGAAGAGT+TGG | + | chr7.4:16377367-16377386 | None:intergenic | 40.0% | |
| TTGTCCAGCTATGAAGATTG+GGG | - | chr7.4:16377553-16377572 | MS.gene014162:intron | 40.0% | |
| ! | AACCACTGGAGTTTTCTTCA+TGG | - | chr7.4:16375601-16375620 | MS.gene014162:intron | 40.0% |
| ! | ACTTCTTTTTCTTGGATGGG+AGG | - | chr7.4:16377476-16377495 | MS.gene014162:CDS | 40.0% |
| ! | AGCCAAGAAAGTACAAGCTA+TGG | + | chr7.4:16376826-16376845 | None:intergenic | 40.0% |
| ! | CTTCTTTTTCTTGGATGGGA+GGG | - | chr7.4:16377477-16377496 | MS.gene014162:CDS | 40.0% |
| ! | GATGGTTCTATATGTTTGGG+TGG | + | chr7.4:16375099-16375118 | None:intergenic | 40.0% |
| ! | GGATTTTTGTGATGCAGACT+AGG | + | chr7.4:16375657-16375676 | None:intergenic | 40.0% |
| ! | GGGTACTTCTTTTTCTTGGA+TGG | - | chr7.4:16377472-16377491 | MS.gene014162:intron | 40.0% |
| ! | GTCCATAGCTTGTACTTTCT+TGG | - | chr7.4:16376821-16376840 | MS.gene014162:intron | 40.0% |
| ! | TAGCTTGTACTTTCTTGGCT+CGG | - | chr7.4:16376826-16376845 | MS.gene014162:intron | 40.0% |
| ! | TTGATGATTGATGCATGTGC+AGG | - | chr7.4:16374656-16374675 | MS.gene014162:CDS | 40.0% |
| ! | TTTCCTCCACGAATTTTCGT+TGG | - | chr7.4:16375248-16375267 | MS.gene014162:intron | 40.0% |
| !! | GCCTTTTGGTTACCTTTCAA+TGG | + | chr7.4:16375051-16375070 | None:intergenic | 40.0% |
| AACTCCCCAATCTTCATAGC+TGG | + | chr7.4:16377560-16377579 | None:intergenic | 45.0% | |
| AAGTAGCGACGGATGGTAAA+AGG | + | chr7.4:16377412-16377431 | None:intergenic | 45.0% | |
| ACCATCCTGAGTTTGTCTCT+AGG | - | chr7.4:16375289-16375308 | MS.gene014162:intron | 45.0% | |
| ACCTAGAGACAAACTCAGGA+TGG | + | chr7.4:16375293-16375312 | None:intergenic | 45.0% | |
| ACTGCATCTTCTCGACAAAG+TGG | - | chr7.4:16374927-16374946 | MS.gene014162:intron | 45.0% | |
| AGCTTGTACTTTCTTGGCTC+GGG | - | chr7.4:16376827-16376846 | MS.gene014162:intron | 45.0% | |
| AGGGGGGAAAACACTTATCA+AGG | - | chr7.4:16376142-16376161 | MS.gene014162:intron | 45.0% | |
| AGGTAACCAAAAGGCAAGCA+AGG | - | chr7.4:16375056-16375075 | MS.gene014162:intron | 45.0% | |
| ATGATTGATGCATGTGCAGG+AGG | - | chr7.4:16374659-16374678 | MS.gene014162:CDS | 45.0% | |
| CAATCCTCCACAAAAGAACC+AGG | + | chr7.4:16375448-16375467 | None:intergenic | 45.0% | |
| CACAACCTAGAGACAAACTC+AGG | + | chr7.4:16375297-16375316 | None:intergenic | 45.0% | |
| CAGTATGAATGCACCTGTCA+TGG | - | chr7.4:16376289-16376308 | MS.gene014162:intron | 45.0% | |
| CATCCAACGAAAATTCGTGG+AGG | + | chr7.4:16375254-16375273 | None:intergenic | 45.0% | |
| CATGGTTCACTCCTACAGAA+CGG | + | chr7.4:16375708-16375727 | None:intergenic | 45.0% | |
| CTCCCCTCACTAACTACTAA+GGG | - | chr7.4:16376123-16376142 | MS.gene014162:intron | 45.0% | |
| CTGCCTAGATTAGAAACCAC+TGG | - | chr7.4:16375587-16375606 | MS.gene014162:intron | 45.0% | |
| GACAGAACCAGCATCTATTC+TGG | + | chr7.4:16375678-16375697 | None:intergenic | 45.0% | |
| GGTAACCAAAAGGCAAGCAA+GGG | - | chr7.4:16375057-16375076 | MS.gene014162:intron | 45.0% | |
| GTCCATGAAGAAAACTCCAG+TGG | + | chr7.4:16375606-16375625 | None:intergenic | 45.0% | |
| TATGAGCGTGCTAGGATTCT+CGG | - | chr7.4:16374813-16374832 | MS.gene014162:intron | 45.0% | |
| TCCCCTCACTAACTACTAAG+GGG | - | chr7.4:16376124-16376143 | MS.gene014162:intron | 45.0% | |
| TCTCCCCTCACTAACTACTA+AGG | - | chr7.4:16376122-16376141 | MS.gene014162:intron | 45.0% | |
| TCTCTAGGTTGTGAAACGCA+GGG | - | chr7.4:16375304-16375323 | MS.gene014162:intron | 45.0% | |
| TGACTAAGTATGAGCGTGCT+AGG | - | chr7.4:16374805-16374824 | MS.gene014162:intron | 45.0% | |
| TGATTGATGCATGTGCAGGA+GGG | - | chr7.4:16374660-16374679 | MS.gene014162:CDS | 45.0% | |
| TGTAAGGATGAGAAAGAGGC+TGG | + | chr7.4:16375127-16375146 | None:intergenic | 45.0% | |
| TTTCTTGGATGGGAGGGTTT+AGG | - | chr7.4:16377483-16377502 | MS.gene014162:CDS | 45.0% | |
| ! | AATAGGTTGCAGGCCTTGTA+AGG | - | chr7.4:16375833-16375852 | MS.gene014162:intron | 45.0% |
| ! | TGTCAGGTTTTCCGTTCTGT+AGG | - | chr7.4:16375694-16375713 | MS.gene014162:intron | 45.0% |
| ! | TTGGTTCTCCTTCTGCATCT+AGG | + | chr7.4:16374722-16374741 | None:intergenic | 45.0% |
| !! | CTTAGAGGCACTATCACTCA+AGG | + | chr7.4:16375733-16375752 | None:intergenic | 45.0% |
| !! | GAATAGATGCTGGTTCTGTC+AGG | - | chr7.4:16375678-16375697 | MS.gene014162:intron | 45.0% |
| !! | ACATAATTAATAATTAATTA+GGG | - | chr7.4:16374516-16374535 | MS.gene014162:intron | 5.0% |
| AAAACGATGCAGGTACGAGG+AGG | - | chr7.4:16374564-16374583 | MS.gene014162:intron | 50.0% | |
| AGACTCCTGGAAGAGACAAG+TGG | - | chr7.4:16377597-16377616 | MS.gene014162:CDS | 50.0% | |
| AGCTGATTGTGGAAGACTCC+TGG | - | chr7.4:16377584-16377603 | MS.gene014162:intron | 50.0% | |
| AGTTGTCAACTCCACTTGCC+TGG | - | chr7.4:16375427-16375446 | MS.gene014162:intron | 50.0% | |
| CCACAAAAGAACCAGGCAAG+TGG | + | chr7.4:16375441-16375460 | None:intergenic | 50.0% | |
| CCCCCCTTAGTAGTTAGTGA+GGG | + | chr7.4:16376129-16376148 | None:intergenic | 50.0% | |
| CCCCCTTAGTAGTTAGTGAG+GGG | + | chr7.4:16376128-16376147 | None:intergenic | 50.0% | |
| CCCCTCACTAACTACTAAGG+GGG | - | chr7.4:16376125-16376144 | MS.gene014162:intron | 50.0% | |
| CCCTCACTAACTACTAAGGG+GGG | - | chr7.4:16376126-16376145 | MS.gene014162:intron | 50.0% | |
| CGTTCTGTAGGAGTGAACCA+TGG | - | chr7.4:16375706-16375725 | MS.gene014162:intron | 50.0% | |
| CTCTAGGTTGTGAAACGCAG+GGG | - | chr7.4:16375305-16375324 | MS.gene014162:intron | 50.0% | |
| GACTCCTGGAAGAGACAAGT+GGG | - | chr7.4:16377598-16377617 | MS.gene014162:CDS | 50.0% | |
| GCACTATCACTCAAGGACCA+TGG | + | chr7.4:16375726-16375745 | None:intergenic | 50.0% | |
| GGAAAAGGAAGATGCTGCAC+CGG | - | chr7.4:16374752-16374771 | MS.gene014162:intron | 50.0% | |
| GGTACCTCAATTTCAGGCTC+TGG | + | chr7.4:16374595-16374614 | None:intergenic | 50.0% | |
| GTACTCGCGCTCTTCAAATC+AGG | - | chr7.4:16374835-16374854 | MS.gene014162:intron | 50.0% | |
| GTCTCTAGGTTGTGAAACGC+AGG | - | chr7.4:16375303-16375322 | MS.gene014162:intron | 50.0% | |
| GTTCAACTGAAATCCACGGG+AGG | + | chr7.4:16374956-16374975 | None:intergenic | 50.0% | |
| TCCCCCCTTAGTAGTTAGTG+AGG | + | chr7.4:16376130-16376149 | None:intergenic | 50.0% | |
| TCTAGGTTGTGAAACGCAGG+GGG | - | chr7.4:16375306-16375325 | MS.gene014162:intron | 50.0% | |
| TGCACCTGTCATGGTTGAGT+TGG | - | chr7.4:16376298-16376317 | MS.gene014162:intron | 50.0% | |
| TTCCATCAGGCAAGTAGCGA+CGG | + | chr7.4:16377423-16377442 | None:intergenic | 50.0% | |
| ! | ACCTCAATTTCAGGCTCTGG+TGG | + | chr7.4:16374592-16374611 | None:intergenic | 50.0% |
| ! | CATTGCCCTTGCTTGCCTTT+TGG | + | chr7.4:16375065-16375084 | None:intergenic | 50.0% |
| !! | ACCTGTCATGGTTGAGTTGG+AGG | - | chr7.4:16376301-16376320 | MS.gene014162:intron | 50.0% |
| !! | CCACTTGCCTGGTTCTTTTG+TGG | - | chr7.4:16375438-16375457 | MS.gene014162:intron | 50.0% |
| !! | CCTGTCATGGTTGAGTTGGA+GGG | - | chr7.4:16376302-16376321 | MS.gene014162:intron | 50.0% |
| !! | CTGTCATGGTTGAGTTGGAG+GGG | - | chr7.4:16376303-16376322 | MS.gene014162:intron | 50.0% |
| !! | CTTGCCTGGTTCTTTTGTGG+AGG | - | chr7.4:16375441-16375460 | MS.gene014162:intron | 50.0% |
| !! | GCTTGGTGCAAACTCTAAGC+AGG | + | chr7.4:16375902-16375921 | None:intergenic | 50.0% |
| !! | GGGAGTTGATGAGCTGATTG+TGG | - | chr7.4:16377573-16377592 | MS.gene014162:intron | 50.0% |
| !! | GTTCTTCTGGGACGTTCAAC+CGG | + | chr7.4:16374774-16374793 | None:intergenic | 50.0% |
| !! | TGTCATGGTTGAGTTGGAGG+GGG | - | chr7.4:16376304-16376323 | MS.gene014162:intron | 50.0% |
| !! | TTGTTGTGTTGGCTCTGCCA+TGG | - | chr7.4:16377275-16377294 | MS.gene014162:CDS | 50.0% |
| ACCACCCACTTGTCTCTTCC+AGG | + | chr7.4:16377605-16377624 | None:intergenic | 55.0% | |
| ATCAGGCAAGTAGCGACGGA+TGG | + | chr7.4:16377419-16377438 | None:intergenic | 55.0% | |
| ATCCGTCGCTACTTGCCTGA+TGG | - | chr7.4:16377418-16377437 | MS.gene014162:intron | 55.0% | |
| CCATGAAGGAGCTACGAGAG+CGG | - | chr7.4:16377380-16377399 | MS.gene014162:CDS | 55.0% | |
| CCCTCCAACTCAACCATGAC+AGG | + | chr7.4:16376305-16376324 | None:intergenic | 55.0% | |
| CTAGGTTGTGAAACGCAGGG+GGG | - | chr7.4:16375307-16375326 | MS.gene014162:intron | 55.0% | |
| GACAAAGTGGTATCCTCCCG+TGG | - | chr7.4:16374940-16374959 | MS.gene014162:intron | 55.0% | |
| GCCACCAGAGCCTGAAATTG+AGG | - | chr7.4:16374588-16374607 | MS.gene014162:intron | 55.0% | |
| GTCGCTACTTGCCTGATGGA+AGG | - | chr7.4:16377422-16377441 | MS.gene014162:intron | 55.0% | |
| TCCTGGAAGAGACAAGTGGG+TGG | - | chr7.4:16377601-16377620 | MS.gene014162:CDS | 55.0% | |
| ! | AGAAAGAGGCTGGCCATGGA+TGG | + | chr7.4:16375117-16375136 | None:intergenic | 55.0% |
| ! | GATGAGAAAGAGGCTGGCCA+TGG | + | chr7.4:16375121-16375140 | None:intergenic | 55.0% |
| CCGCTCTCGTAGCTCCTTCA+TGG | + | chr7.4:16377383-16377402 | None:intergenic | 60.0% | |
| GGGGGAAACTGACCCACTTG+AGG | - | chr7.4:16376322-16376341 | MS.gene014162:intron | 60.0% | |
| ! | GCATGTGCAGGAGGGTGCAG+AGG | - | chr7.4:16374668-16374687 | MS.gene014162:CDS | 65.0% |
| ! | TGTGCAGGAGGGTGCAGAGG+AGG | - | chr7.4:16374671-16374690 | MS.gene014162:CDS | 65.0% |
| ! | GCAGGAGGGTGCAGAGGAGG+AGG | - | chr7.4:16374674-16374693 | MS.gene014162:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 16374453 | 16377630 | 16374453 | ID=MS.gene014162 |
| chr7.4 | mRNA | 16374453 | 16377630 | 16374453 | ID=MS.gene014162.t1;Parent=MS.gene014162 |
| chr7.4 | exon | 16377596 | 16377630 | 16377596 | ID=MS.gene014162.t1.exon1;Parent=MS.gene014162.t1 |
| chr7.4 | CDS | 16377596 | 16377630 | 16377596 | ID=cds.MS.gene014162.t1;Parent=MS.gene014162.t1 |
| chr7.4 | exon | 16377474 | 16377507 | 16377474 | ID=MS.gene014162.t1.exon2;Parent=MS.gene014162.t1 |
| chr7.4 | CDS | 16377474 | 16377507 | 16377474 | ID=cds.MS.gene014162.t1;Parent=MS.gene014162.t1 |
| chr7.4 | exon | 16377227 | 16377405 | 16377227 | ID=MS.gene014162.t1.exon3;Parent=MS.gene014162.t1 |
| chr7.4 | CDS | 16377227 | 16377405 | 16377227 | ID=cds.MS.gene014162.t1;Parent=MS.gene014162.t1 |
| chr7.4 | exon | 16375740 | 16375791 | 16375740 | ID=MS.gene014162.t1.exon4;Parent=MS.gene014162.t1 |
| chr7.4 | CDS | 16375740 | 16375791 | 16375740 | ID=cds.MS.gene014162.t1;Parent=MS.gene014162.t1 |
| chr7.4 | exon | 16374640 | 16374707 | 16374640 | ID=MS.gene014162.t1.exon5;Parent=MS.gene014162.t1 |
| chr7.4 | CDS | 16374640 | 16374707 | 16374640 | ID=cds.MS.gene014162.t1;Parent=MS.gene014162.t1 |
| chr7.4 | exon | 16374453 | 16374522 | 16374453 | ID=MS.gene014162.t1.exon6;Parent=MS.gene014162.t1 |
| chr7.4 | CDS | 16374453 | 16374522 | 16374453 | ID=cds.MS.gene014162.t1;Parent=MS.gene014162.t1 |
| Gene Sequence |
| Protein sequence |
