Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045470.t1 | XP_003607617.1 | 100 | 91 | 0 | 0 | 1 | 91 | 1 | 91 | 1.70E-43 | 184.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045470.t1 | Q9M1Z3 | 87.9 | 91 | 11 | 0 | 1 | 91 | 1 | 91 | 7.4e-40 | 164.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045470.t1 | G7JCP5 | 100.0 | 91 | 0 | 0 | 1 | 91 | 1 | 91 | 1.2e-43 | 184.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045470.t1 | MTR_4g080300 | 100.000 | 91 | 0 | 0 | 1 | 91 | 1 | 91 | 1.49e-63 | 187 |
MS.gene045470.t1 | MTR_4g128050 | 45.455 | 66 | 36 | 0 | 15 | 80 | 8 | 73 | 1.69e-17 | 70.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045470.t1 | AT3G59810 | 87.912 | 91 | 11 | 0 | 1 | 91 | 1 | 91 | 4.20e-55 | 166 |
MS.gene045470.t1 | AT3G59810 | 87.912 | 91 | 11 | 0 | 1 | 91 | 1 | 91 | 4.20e-55 | 166 |
MS.gene045470.t1 | AT3G59810 | 87.912 | 91 | 11 | 0 | 1 | 91 | 1 | 91 | 4.20e-55 | 166 |
MS.gene045470.t1 | AT2G43810 | 85.714 | 91 | 13 | 0 | 1 | 91 | 1 | 91 | 1.73e-54 | 164 |
MS.gene045470.t1 | AT2G43810 | 85.714 | 91 | 13 | 0 | 1 | 91 | 1 | 91 | 1.73e-54 | 164 |
MS.gene045470.t1 | AT2G43810 | 85.714 | 91 | 13 | 0 | 1 | 91 | 1 | 91 | 1.73e-54 | 164 |
MS.gene045470.t1 | AT4G30220 | 48.485 | 66 | 34 | 0 | 15 | 80 | 8 | 73 | 1.33e-18 | 73.6 |
MS.gene045470.t1 | AT4G30220 | 48.485 | 66 | 34 | 0 | 15 | 80 | 16 | 81 | 1.89e-18 | 73.2 |
MS.gene045470.t1 | AT2G14285 | 50.000 | 46 | 23 | 0 | 35 | 80 | 1 | 46 | 3.76e-11 | 53.9 |
Find 28 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTATCCTAGCTTGTCTAGA+TGG | 0.292896 | 4.2:-29783475 | MS.gene045470:CDS |
CAAACAGAGGAGTATGTTAA+TGG | 0.355057 | 4.2:-29783430 | MS.gene045470:CDS |
TTCTGCTAGAGTCCTCTTTG+AGG | 0.400676 | 4.2:+29783254 | None:intergenic |
GCATTCATTCGAGGGAATAA+TGG | 0.408713 | 4.2:-29783382 | MS.gene045470:intron |
GGAACAGAGAAAAGTGGTTC+AGG | 0.419839 | 4.2:-29785129 | MS.gene045470:CDS |
GGACAGCTGAAGAACAAGTA+TGG | 0.438644 | 4.2:-29783409 | MS.gene045470:CDS |
GTCTACCACGAATGGATTTG+AGG | 0.510106 | 4.2:+29785082 | None:intergenic |
ATGGATTTGAGGAAATCAGC+TGG | 0.521169 | 4.2:+29785093 | None:intergenic |
GATTTCCTCAAATCCATTCG+TGG | 0.535672 | 4.2:-29785087 | MS.gene045470:CDS |
GTATCCTAGCTTGTCTAGAT+GGG | 0.549331 | 4.2:-29783474 | MS.gene045470:CDS |
AACCACAGGTCTACCACGAA+TGG | 0.553624 | 4.2:+29785074 | None:intergenic |
TGGATTTGAGGAAATCAGCT+GGG | 0.556965 | 4.2:+29785094 | None:intergenic |
TATGGTGATGCATTCATTCG+AGG | 0.561710 | 4.2:-29783391 | MS.gene045470:CDS |
CAAAGAGGACTCTAGCAGAA+GGG | 0.565739 | 4.2:-29783251 | MS.gene045470:CDS |
TTTAGATTGTAAAAGATGAG+TGG | 0.566691 | 4.2:-29785150 | None:intergenic |
TGTACATCAGTACCTCAAAG+AGG | 0.584586 | 4.2:-29783266 | MS.gene045470:CDS |
GAGTTGAGCTTAACAACCAC+AGG | 0.590065 | 4.2:+29785060 | None:intergenic |
TATACCCATCTAGACAAGCT+AGG | 0.590930 | 4.2:+29783470 | None:intergenic |
ATGAGTGGAACAGAGAAAAG+TGG | 0.591203 | 4.2:-29785135 | MS.gene045470:CDS |
GTGGTTGTTAAGCTCAACTC+TGG | 0.591462 | 4.2:-29785057 | MS.gene045470:CDS |
TGGGTATATGAATATTGCAA+TGG | 0.592472 | 4.2:-29783455 | MS.gene045470:CDS |
AAAGAGGACTCTAGCAGAAG+GGG | 0.600102 | 4.2:-29783250 | MS.gene045470:CDS |
TCAAAGAGGACTCTAGCAGA+AGG | 0.600306 | 4.2:-29783252 | MS.gene045470:CDS |
ATGGTGATGCATTCATTCGA+GGG | 0.615726 | 4.2:-29783390 | MS.gene045470:CDS |
TATTGCAATGGAACAAACAG+AGG | 0.640288 | 4.2:-29783443 | MS.gene045470:CDS |
ATCCATTCGTGGTAGACCTG+TGG | 0.642884 | 4.2:-29785076 | MS.gene045470:CDS |
AACTCTGGTGTTGATTATCG+AGG | 0.646298 | 4.2:-29785042 | MS.gene045470:intron |
GGATTTGAGGAAATCAGCTG+GGG | 0.664226 | 4.2:+29785095 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAACAAAAAAAAACA+TGG | + | chr4.2:29783592-29783611 | None:intergenic | 10.0% |
!! | AAATAATAGATGTTCTAATT+TGG | - | chr4.2:29784004-29784023 | MS.gene045470:intron | 15.0% |
!! | TATTCATTTAGTTATTCAAT+AGG | - | chr4.2:29784322-29784341 | MS.gene045470:intron | 15.0% |
!! | AGATATCTGAATAAGAAAAT+AGG | + | chr4.2:29783501-29783520 | None:intergenic | 20.0% |
!! | AGTTTACATTATATCTTGAT+GGG | - | chr4.2:29783522-29783541 | MS.gene045470:intron | 20.0% |
!! | GATATCTGAATAAGAAAATA+GGG | + | chr4.2:29783500-29783519 | None:intergenic | 20.0% |
!!! | CTCATTTTTTTTCTTAATTC+TGG | - | chr4.2:29784107-29784126 | MS.gene045470:intron | 20.0% |
!!! | TAGAACATCTATTATTTTCA+TGG | + | chr4.2:29784001-29784020 | None:intergenic | 20.0% |
! | AGTTTGGTTATATCACTTAT+TGG | - | chr4.2:29784789-29784808 | MS.gene045470:intron | 25.0% |
! | ATAGGAGTAGAAATTGAAAT+AGG | - | chr4.2:29784340-29784359 | MS.gene045470:intron | 25.0% |
! | ATTAATCTCTGTTACTAGTT+TGG | - | chr4.2:29784773-29784792 | MS.gene045470:intron | 25.0% |
! | CAGTTTACATTATATCTTGA+TGG | - | chr4.2:29783521-29783540 | MS.gene045470:intron | 25.0% |
! | GTTACATTATACTTCTATCT+AGG | - | chr4.2:29784843-29784862 | MS.gene045470:intron | 25.0% |
! | TTCATCAATTTGATACTGTA+TGG | - | chr4.2:29783379-29783398 | MS.gene045470:intron | 25.0% |
! | TTTACTTTCTCTGTCTAATT+TGG | - | chr4.2:29784066-29784085 | MS.gene045470:intron | 25.0% |
! | TTTGGTTAAATGAAAAGAGA+TGG | - | chr4.2:29783912-29783931 | MS.gene045470:intron | 25.0% |
!! | GATTGGAACAAGATAATTTT+AGG | - | chr4.2:29783722-29783741 | MS.gene045470:intron | 25.0% |
!!! | ATAATGCATTGATTGTTTCT+TGG | - | chr4.2:29784744-29784763 | MS.gene045470:intron | 25.0% |
!!! | TTTTTTTGAAATTCGGTATC+TGG | - | chr4.2:29783612-29783631 | MS.gene045470:intron | 25.0% |
AAATGAAAAGAGATGGAATG+TGG | - | chr4.2:29783919-29783938 | MS.gene045470:intron | 30.0% | |
ACCATTTCATCTTTAACCAT+GGG | - | chr4.2:29784433-29784452 | MS.gene045470:intron | 30.0% | |
AGAAAAAGTTAGGTTTGACT+GGG | - | chr4.2:29784368-29784387 | MS.gene045470:intron | 30.0% | |
ATAATTTGGCATTGTAGGAT+TGG | - | chr4.2:29783705-29783724 | MS.gene045470:intron | 30.0% | |
TAAGAGACAAATAGCAAGAA+AGG | - | chr4.2:29784241-29784260 | MS.gene045470:intron | 30.0% | |
TACCATTTCATCTTTAACCA+TGG | - | chr4.2:29784432-29784451 | MS.gene045470:intron | 30.0% | |
TCACAATGAAAAACCACAAT+GGG | + | chr4.2:29783788-29783807 | None:intergenic | 30.0% | |
TCAGAAAAGGCTATAATGTT+TGG | - | chr4.2:29783894-29783913 | MS.gene045470:intron | 30.0% | |
TGGGTATATGAATATTGCAA+TGG | - | chr4.2:29784925-29784944 | MS.gene045470:intron | 30.0% | |
TTCACAATGAAAAACCACAA+TGG | + | chr4.2:29783789-29783808 | None:intergenic | 30.0% | |
! | AAACTAGGCTCAATTGTTTT+TGG | - | chr4.2:29784871-29784890 | MS.gene045470:intron | 30.0% |
!! | AATGGGTTGTTTAATTGTCT+AGG | + | chr4.2:29783771-29783790 | None:intergenic | 30.0% |
!! | TTATGTCACTTTGGAATTTG+TGG | - | chr4.2:29783404-29783423 | MS.gene045470:CDS | 30.0% |
!! | TTTTAGGAGAGTACAATCTA+AGG | - | chr4.2:29783738-29783757 | MS.gene045470:intron | 30.0% |
!! | TTTTGTTTGTCCAAAGCAAA+AGG | + | chr4.2:29783860-29783879 | None:intergenic | 30.0% |
!!! | AATTTTAGGTTCTCATTCCT+AGG | - | chr4.2:29783439-29783458 | MS.gene045470:CDS | 30.0% |
!!! | GGATTTTGAGTTCGAATTTT+AGG | - | chr4.2:29783425-29783444 | MS.gene045470:CDS | 30.0% |
!!! | TGTATGGTTTTATGTCACTT+TGG | - | chr4.2:29783395-29783414 | MS.gene045470:CDS | 30.0% |
!!! | TTGTTTTTGGTTAATCTTGC+AGG | - | chr4.2:29784884-29784903 | MS.gene045470:intron | 30.0% |
ACCAATATGTGATACTACTC+TGG | + | chr4.2:29784469-29784488 | None:intergenic | 35.0% | |
ACCAGAGTAGTATCACATAT+TGG | - | chr4.2:29784465-29784484 | MS.gene045470:intron | 35.0% | |
ATAGGAGGAGAGAAAAAGTT+AGG | - | chr4.2:29784358-29784377 | MS.gene045470:intron | 35.0% | |
ATCACTTCATCTAACACCAT+TGG | - | chr4.2:29784692-29784711 | MS.gene045470:intron | 35.0% | |
ATTCCTAGGTCACTGTAATT+TGG | - | chr4.2:29783453-29783472 | MS.gene045470:CDS | 35.0% | |
CCTACAATGCCAAATTATGT+GGG | + | chr4.2:29783703-29783722 | None:intergenic | 35.0% | |
CTACAATGCCAAATTATGTG+GGG | + | chr4.2:29783702-29783721 | None:intergenic | 35.0% | |
GAAAAAGTTAGGTTTGACTG+GGG | - | chr4.2:29784369-29784388 | MS.gene045470:intron | 35.0% | |
GACAATTAAACAACCCATTG+TGG | - | chr4.2:29783772-29783791 | MS.gene045470:intron | 35.0% | |
GAGAAAAAGTTAGGTTTGAC+TGG | - | chr4.2:29784367-29784386 | MS.gene045470:intron | 35.0% | |
GCACATCAACACTAATTGAA+TGG | + | chr4.2:29783828-29783847 | None:intergenic | 35.0% | |
GGAGTAGAAATTGAAATAGG+AGG | - | chr4.2:29784343-29784362 | MS.gene045470:intron | 35.0% | |
GGTTATATCACTTATTGGTG+TGG | - | chr4.2:29784794-29784813 | MS.gene045470:intron | 35.0% | |
GTAGTATCACATATTGGTGT+AGG | - | chr4.2:29784471-29784490 | MS.gene045470:intron | 35.0% | |
GTTGTTTAATTGTCTAGGCT+TGG | + | chr4.2:29783766-29783785 | None:intergenic | 35.0% | |
TACACTAGGAGAAATAAGCA+TGG | - | chr4.2:29784266-29784285 | MS.gene045470:intron | 35.0% | |
TATCACTTATTGGTGTGGAT+TGG | - | chr4.2:29784799-29784818 | MS.gene045470:intron | 35.0% | |
TATTGCAATGGAACAAACAG+AGG | - | chr4.2:29784937-29784956 | MS.gene045470:intron | 35.0% | |
TCCCATGGTTAAAGATGAAA+TGG | + | chr4.2:29784437-29784456 | None:intergenic | 35.0% | |
TCCTACAATGCCAAATTATG+TGG | + | chr4.2:29783704-29783723 | None:intergenic | 35.0% | |
TCTATCTAGGTACACAAACT+AGG | - | chr4.2:29784856-29784875 | MS.gene045470:intron | 35.0% | |
TGATAAGCGATATCAAAGTG+AGG | - | chr4.2:29784575-29784594 | MS.gene045470:intron | 35.0% | |
TTGGGTTCACTAATCAGAAA+AGG | - | chr4.2:29783881-29783900 | MS.gene045470:intron | 35.0% | |
! | CAAACAGAGGAGTATGTTAA+TGG | - | chr4.2:29784950-29784969 | MS.gene045470:intron | 35.0% |
! | CTTTTCAACTGCTAAAAGCA+GGG | + | chr4.2:29784183-29784202 | None:intergenic | 35.0% |
! | GCTTTGGACAAACAAAACTT+GGG | - | chr4.2:29783863-29783882 | MS.gene045470:intron | 35.0% |
! | TCTTTTCAACTGCTAAAAGC+AGG | + | chr4.2:29784184-29784203 | None:intergenic | 35.0% |
! | TGCTTTGGACAAACAAAACT+TGG | - | chr4.2:29783862-29783881 | MS.gene045470:intron | 35.0% |
!! | CATTATATCTTGATGGGTTG+TGG | - | chr4.2:29783528-29783547 | MS.gene045470:intron | 35.0% |
!! | TCAATTAGTGTTGATGTGCA+TGG | - | chr4.2:29783829-29783848 | MS.gene045470:intron | 35.0% |
AAGCGATATCAAAGTGAGGT+AGG | - | chr4.2:29784579-29784598 | MS.gene045470:intron | 40.0% | |
AGCTAAAAATGTTGCACCAG+AGG | + | chr4.2:29784545-29784564 | None:intergenic | 40.0% | |
AGGTAGGTGAACTCTTATCA+GGG | - | chr4.2:29784595-29784614 | MS.gene045470:intron | 40.0% | |
ATGAGTGGAACAGAGAAAAG+TGG | - | chr4.2:29783245-29783264 | MS.gene045470:CDS | 40.0% | |
ATGGATTTGAGGAAATCAGC+TGG | + | chr4.2:29783290-29783309 | None:intergenic | 40.0% | |
ATGGTATGAGTCATTGTCCA+AGG | + | chr4.2:29784418-29784437 | None:intergenic | 40.0% | |
ATGTGATACTACTCTGGTCA+AGG | + | chr4.2:29784463-29784482 | None:intergenic | 40.0% | |
CAACCAAATTACAGTGACCT+AGG | + | chr4.2:29783459-29783478 | None:intergenic | 40.0% | |
CCCACATAATTTGGCATTGT+AGG | - | chr4.2:29783700-29783719 | MS.gene045470:intron | 40.0% | |
GAGAAATAAGCATGGAACAG+AGG | - | chr4.2:29784274-29784293 | MS.gene045470:intron | 40.0% | |
GATTTCCTCAAATCCATTCG+TGG | - | chr4.2:29783293-29783312 | MS.gene045470:intron | 40.0% | |
GCATTCATTCGAGGGAATAA+TGG | - | chr4.2:29784998-29785017 | MS.gene045470:intron | 40.0% | |
TAAGCTAGCCCCACATAATT+TGG | - | chr4.2:29783691-29783710 | MS.gene045470:intron | 40.0% | |
TATACCCATCTAGACAAGCT+AGG | + | chr4.2:29784913-29784932 | None:intergenic | 40.0% | |
TGAAAAGAGATGGAATGTGG+TGG | - | chr4.2:29783922-29783941 | MS.gene045470:intron | 40.0% | |
TGGATTTGAGGAAATCAGCT+GGG | + | chr4.2:29783289-29783308 | None:intergenic | 40.0% | |
TGTACATCAGTACCTCAAAG+AGG | - | chr4.2:29785114-29785133 | MS.gene045470:CDS | 40.0% | |
TTATTCCAGAGCTACCACTT+TGG | + | chr4.2:29784728-29784747 | None:intergenic | 40.0% | |
! | ATGGTGATGCATTCATTCGA+GGG | - | chr4.2:29784990-29785009 | MS.gene045470:intron | 40.0% |
! | CATGGTTACACCTTTTGCTT+TGG | - | chr4.2:29783847-29783866 | MS.gene045470:intron | 40.0% |
! | GTATCCTAGCTTGTCTAGAT+GGG | - | chr4.2:29784906-29784925 | MS.gene045470:intron | 40.0% |
! | TAGCAAGAAAGGAGTACACT+AGG | - | chr4.2:29784252-29784271 | MS.gene045470:intron | 40.0% |
! | TATGGTGATGCATTCATTCG+AGG | - | chr4.2:29784989-29785008 | MS.gene045470:intron | 40.0% |
!! | AACTCTGGTGTTGATTATCG+AGG | - | chr4.2:29783338-29783357 | MS.gene045470:intron | 40.0% |
!! | TCTTATCAGGGAGAGTATCA+GGG | - | chr4.2:29784607-29784626 | MS.gene045470:intron | 40.0% |
AAAGAGGACTCTAGCAGAAG+GGG | - | chr4.2:29785130-29785149 | MS.gene045470:CDS | 45.0% | |
ATCTGGTCCTTGACTAATCC+AGG | - | chr4.2:29783629-29783648 | MS.gene045470:intron | 45.0% | |
CAAAGAGGACTCTAGCAGAA+GGG | - | chr4.2:29785129-29785148 | MS.gene045470:CDS | 45.0% | |
CTTTGGTCAAGGAGATCCAA+TGG | + | chr4.2:29784711-29784730 | None:intergenic | 45.0% | |
GAGGTAGGTGAACTCTTATC+AGG | - | chr4.2:29784594-29784613 | MS.gene045470:intron | 45.0% | |
GAGTTGAGCTTAACAACCAC+AGG | + | chr4.2:29783323-29783342 | None:intergenic | 45.0% | |
GCTATTCTGTGATTGCAGCA+CGG | + | chr4.2:29784509-29784528 | None:intergenic | 45.0% | |
GGAACAGAGAAAAGTGGTTC+AGG | - | chr4.2:29783251-29783270 | MS.gene045470:CDS | 45.0% | |
GGACAGCTGAAGAACAAGTA+TGG | - | chr4.2:29784971-29784990 | MS.gene045470:intron | 45.0% | |
GGATTTGAGGAAATCAGCTG+GGG | + | chr4.2:29783288-29783307 | None:intergenic | 45.0% | |
GTGCTGCAATCACAGAATAG+CGG | - | chr4.2:29784508-29784527 | MS.gene045470:intron | 45.0% | |
GTGGTTGTTAAGCTCAACTC+TGG | - | chr4.2:29783323-29783342 | MS.gene045470:intron | 45.0% | |
TCAAAGAGGACTCTAGCAGA+AGG | - | chr4.2:29785128-29785147 | MS.gene045470:CDS | 45.0% | |
TCTGGTCCTTGACTAATCCA+GGG | - | chr4.2:29783630-29783649 | MS.gene045470:intron | 45.0% | |
TTCTGCTAGAGTCCTCTTTG+AGG | + | chr4.2:29785129-29785148 | None:intergenic | 45.0% | |
TTGGATCTCCTTGACCAAAG+TGG | - | chr4.2:29784711-29784730 | MS.gene045470:intron | 45.0% | |
! | GCAATCACAGAATAGCGGAA+CGG | - | chr4.2:29784513-29784532 | MS.gene045470:intron | 45.0% |
! | GGTATCCTAGCTTGTCTAGA+TGG | - | chr4.2:29784905-29784924 | MS.gene045470:intron | 45.0% |
! | GTCTACCACGAATGGATTTG+AGG | + | chr4.2:29783301-29783320 | None:intergenic | 45.0% |
!! | ATTGGTCCCTGGATTAGTCA+AGG | + | chr4.2:29783639-29783658 | None:intergenic | 45.0% |
!! | CTCTTATCAGGGAGAGTATC+AGG | - | chr4.2:29784606-29784625 | MS.gene045470:intron | 45.0% |
!! | TTGGATTGGGGAGAGTATCA+GGG | - | chr4.2:29784638-29784657 | MS.gene045470:intron | 45.0% |
!!! | TTTTTTTTTTTTTTGAAATT+CGG | - | chr4.2:29783605-29783624 | MS.gene045470:intron | 5.0% |
AACCACAGGTCTACCACGAA+TGG | + | chr4.2:29783309-29783328 | None:intergenic | 50.0% | |
AGGGTCTCTCTGTTGGATTG+GGG | - | chr4.2:29784626-29784645 | MS.gene045470:intron | 50.0% | |
AGTTAGGTTTGACTGGGGAG+AGG | - | chr4.2:29784374-29784393 | MS.gene045470:intron | 50.0% | |
ATCCATTCGTGGTAGACCTG+TGG | - | chr4.2:29783304-29783323 | MS.gene045470:intron | 50.0% | |
CAGAGCTACCACTTTGGTCA+AGG | + | chr4.2:29784722-29784741 | None:intergenic | 50.0% | |
CAGGGTCTCTCTGTTGGATT+GGG | - | chr4.2:29784625-29784644 | MS.gene045470:intron | 50.0% | |
CTTGACCAAAGTGGTAGCTC+TGG | - | chr4.2:29784720-29784739 | MS.gene045470:intron | 50.0% | |
GAGTATCAGGGTCTCTCTGT+TGG | - | chr4.2:29784619-29784638 | MS.gene045470:intron | 50.0% | |
GATAAGAGTCACCCTCTCCA+AGG | + | chr4.2:29784675-29784694 | None:intergenic | 50.0% | |
TCAGGGTCTCTCAAACACCT+TGG | - | chr4.2:29784398-29784417 | MS.gene045470:intron | 50.0% | |
TCAGGGTCTCTCTGTTGGAT+TGG | - | chr4.2:29784624-29784643 | MS.gene045470:intron | 50.0% | |
TCCCTCTAACACCTTGGAGA+GGG | - | chr4.2:29784661-29784680 | MS.gene045470:intron | 50.0% | |
TTTGACTGGGGAGAGGATCA+GGG | - | chr4.2:29784381-29784400 | MS.gene045470:intron | 50.0% | |
! | ACCCTCTCCAAGGTGTTAGA+GGG | + | chr4.2:29784665-29784684 | None:intergenic | 50.0% |
! | CACAGAATAGCGGAACGGAA+AGG | - | chr4.2:29784518-29784537 | MS.gene045470:intron | 50.0% |
!! | GTTGGATTGGGGAGAGTATC+AGG | - | chr4.2:29784637-29784656 | MS.gene045470:intron | 50.0% |
CTCTGGTCAAGGAGATCCCA+TGG | + | chr4.2:29784452-29784471 | None:intergenic | 55.0% | |
GTCCCTCTAACACCTTGGAG+AGG | - | chr4.2:29784660-29784679 | MS.gene045470:intron | 55.0% | |
GTTTGACTGGGGAGAGGATC+AGG | - | chr4.2:29784380-29784399 | MS.gene045470:intron | 55.0% | |
TCAGGGTCCCTCTAACACCT+TGG | - | chr4.2:29784655-29784674 | MS.gene045470:intron | 55.0% | |
TTAATTCCCCCCTGGACGGT+GGG | + | chr4.2:29783662-29783681 | None:intergenic | 55.0% | |
TTTAATTCCCCCCTGGACGG+TGG | + | chr4.2:29783663-29783682 | None:intergenic | 55.0% | |
! | CACCCTCTCCAAGGTGTTAG+AGG | + | chr4.2:29784666-29784685 | None:intergenic | 55.0% |
! | CTCAGGCTTTAATTCCCCCC+TGG | + | chr4.2:29783670-29783689 | None:intergenic | 55.0% |
! | GGCTTTAATTCCCCCCTGGA+CGG | + | chr4.2:29783666-29783685 | None:intergenic | 55.0% |
!! | ATGTGGGGCTAGCTTAGCTC+AGG | + | chr4.2:29783687-29783706 | None:intergenic | 55.0% |
AGCGGAACGGAAAGGACCTC+TGG | - | chr4.2:29784526-29784545 | MS.gene045470:intron | 60.0% | |
ACCAATCCCACCGTCCAGGG+GGG | - | chr4.2:29783653-29783672 | MS.gene045470:intron | 65.0% | |
AGGGACCAATCCCACCGTCC+AGG | - | chr4.2:29783649-29783668 | MS.gene045470:intron | 65.0% | |
GACCAATCCCACCGTCCAGG+GGG | - | chr4.2:29783652-29783671 | MS.gene045470:intron | 65.0% | |
GGACCAATCCCACCGTCCAG+GGG | - | chr4.2:29783651-29783670 | MS.gene045470:intron | 65.0% | |
GGGACCAATCCCACCGTCCA+GGG | - | chr4.2:29783650-29783669 | MS.gene045470:intron | 65.0% | |
!! | TGGACGGTGGGATTGGTCCC+TGG | + | chr4.2:29783650-29783669 | None:intergenic | 65.0% |
TCCCCCCTGGACGGTGGGAT+TGG | + | chr4.2:29783657-29783676 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 29783245 | 29785157 | 29783245 | ID=MS.gene045470 |
chr4.2 | mRNA | 29783245 | 29785157 | 29783245 | ID=MS.gene045470.t1;Parent=MS.gene045470 |
chr4.2 | exon | 29785043 | 29785157 | 29785043 | ID=MS.gene045470.t1.exon1;Parent=MS.gene045470.t1 |
chr4.2 | CDS | 29785043 | 29785157 | 29785043 | ID=cds.MS.gene045470.t1;Parent=MS.gene045470.t1 |
chr4.2 | exon | 29783383 | 29783496 | 29783383 | ID=MS.gene045470.t1.exon2;Parent=MS.gene045470.t1 |
chr4.2 | CDS | 29783383 | 29783496 | 29783383 | ID=cds.MS.gene045470.t1;Parent=MS.gene045470.t1 |
chr4.2 | exon | 29783245 | 29783291 | 29783245 | ID=MS.gene045470.t1.exon3;Parent=MS.gene045470.t1 |
chr4.2 | CDS | 29783245 | 29783291 | 29783245 | ID=cds.MS.gene045470.t1;Parent=MS.gene045470.t1 |
Gene Sequence |
Protein sequence |