Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026629.t1 | XP_003589582.1 | 97.8 | 697 | 14 | 1 | 1 | 697 | 1 | 696 | 0.00E+00 | 1367.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026629.t1 | Q9CAP8 | 72.2 | 697 | 187 | 4 | 1 | 696 | 1 | 691 | 8.4e-301 | 1033.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026629.t1 | G7I8F2 | 97.8 | 697 | 14 | 1 | 1 | 697 | 1 | 696 | 0.0e+00 | 1367.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026629.t1 | MTR_1g030290 | 97.848 | 697 | 14 | 1 | 1 | 697 | 1 | 696 | 0.0 | 1398 |
MS.gene026629.t1 | MTR_3g087980 | 76.580 | 696 | 160 | 2 | 1 | 696 | 1 | 693 | 0.0 | 1117 |
MS.gene026629.t1 | MTR_3g082660 | 62.787 | 696 | 252 | 4 | 5 | 696 | 35 | 727 | 0.0 | 897 |
MS.gene026629.t1 | MTR_1g104810 | 34.206 | 649 | 375 | 11 | 57 | 696 | 80 | 685 | 7.61e-116 | 363 |
MS.gene026629.t1 | MTR_1g104810 | 34.660 | 603 | 358 | 9 | 103 | 696 | 43 | 618 | 2.15e-115 | 360 |
MS.gene026629.t1 | MTR_7g109830 | 33.029 | 657 | 377 | 15 | 57 | 695 | 41 | 652 | 2.26e-102 | 327 |
MS.gene026629.t1 | MTR_5g009350 | 33.384 | 653 | 386 | 15 | 56 | 697 | 42 | 656 | 1.45e-100 | 323 |
MS.gene026629.t1 | MTR_1g086600 | 33.127 | 646 | 387 | 13 | 62 | 697 | 68 | 678 | 5.11e-100 | 322 |
MS.gene026629.t1 | MTR_5g009350 | 33.540 | 644 | 379 | 15 | 56 | 688 | 42 | 647 | 8.44e-100 | 320 |
MS.gene026629.t1 | MTR_5g009360 | 32.925 | 653 | 389 | 15 | 56 | 697 | 42 | 656 | 1.54e-97 | 315 |
MS.gene026629.t1 | MTR_4g068670 | 32.125 | 607 | 369 | 14 | 104 | 695 | 73 | 651 | 2.26e-96 | 311 |
MS.gene026629.t1 | MTR_8g099420 | 31.108 | 659 | 395 | 13 | 55 | 697 | 42 | 657 | 2.43e-96 | 311 |
MS.gene026629.t1 | MTR_1g034360 | 31.260 | 611 | 370 | 15 | 104 | 695 | 74 | 653 | 7.34e-88 | 289 |
MS.gene026629.t1 | MTR_5g009350 | 33.630 | 562 | 322 | 15 | 56 | 606 | 42 | 563 | 2.68e-84 | 277 |
MS.gene026629.t1 | MTR_5g009350 | 33.631 | 559 | 323 | 14 | 56 | 603 | 42 | 563 | 1.22e-83 | 275 |
MS.gene026629.t1 | MTR_5g009360 | 35.185 | 540 | 313 | 14 | 169 | 697 | 17 | 530 | 7.87e-82 | 270 |
MS.gene026629.t1 | MTR_3g084450 | 26.267 | 651 | 378 | 17 | 109 | 695 | 107 | 719 | 1.46e-45 | 174 |
MS.gene026629.t1 | MTR_3g084470 | 26.275 | 647 | 380 | 22 | 109 | 695 | 105 | 714 | 1.90e-41 | 161 |
MS.gene026629.t1 | MTR_8g083170 | 25.502 | 647 | 390 | 18 | 109 | 695 | 109 | 723 | 2.35e-37 | 149 |
MS.gene026629.t1 | MTR_3g084450 | 27.475 | 495 | 272 | 14 | 251 | 695 | 54 | 511 | 1.89e-35 | 141 |
MS.gene026629.t1 | MTR_5g027500 | 26.680 | 491 | 254 | 23 | 118 | 582 | 78 | 488 | 2.07e-23 | 105 |
MS.gene026629.t1 | MTR_4g077900 | 30.058 | 346 | 160 | 16 | 251 | 582 | 121 | 398 | 2.85e-23 | 104 |
MS.gene026629.t1 | MTR_5g027480 | 28.571 | 350 | 170 | 16 | 251 | 587 | 198 | 480 | 2.57e-21 | 99.0 |
MS.gene026629.t1 | MTR_4g128337 | 24.602 | 565 | 331 | 16 | 107 | 651 | 57 | 546 | 8.21e-19 | 90.9 |
MS.gene026629.t1 | MTR_1g026310 | 27.647 | 340 | 178 | 13 | 251 | 584 | 205 | 482 | 4.06e-18 | 89.0 |
MS.gene026629.t1 | MTR_8g039720 | 26.197 | 355 | 191 | 11 | 235 | 584 | 197 | 485 | 1.15e-16 | 84.3 |
MS.gene026629.t1 | MTR_3g035130 | 25.872 | 344 | 187 | 10 | 240 | 579 | 153 | 432 | 5.45e-16 | 81.6 |
MS.gene026629.t1 | MTR_3g035130 | 25.872 | 344 | 187 | 10 | 240 | 579 | 153 | 432 | 7.50e-16 | 81.3 |
MS.gene026629.t1 | MTR_5g076220 | 34.161 | 161 | 89 | 5 | 444 | 593 | 322 | 476 | 5.25e-14 | 75.9 |
MS.gene026629.t1 | MTR_5g007640 | 33.143 | 175 | 91 | 8 | 422 | 584 | 349 | 509 | 7.92e-14 | 75.1 |
MS.gene026629.t1 | MTR_4g057730 | 30.374 | 214 | 123 | 9 | 422 | 620 | 307 | 509 | 1.12e-13 | 74.7 |
MS.gene026629.t1 | MTR_2g095510 | 31.977 | 172 | 94 | 9 | 422 | 584 | 304 | 461 | 1.45e-13 | 74.3 |
MS.gene026629.t1 | MTR_1g063110 | 27.778 | 216 | 128 | 9 | 422 | 620 | 311 | 515 | 1.81e-13 | 73.9 |
MS.gene026629.t1 | MTR_4g057730 | 32.749 | 171 | 98 | 7 | 422 | 586 | 307 | 466 | 2.55e-13 | 73.2 |
MS.gene026629.t1 | MTR_2g105570 | 27.459 | 244 | 153 | 8 | 422 | 649 | 310 | 545 | 6.56e-13 | 72.4 |
MS.gene026629.t1 | MTR_2g095510 | 32.895 | 152 | 80 | 8 | 422 | 564 | 304 | 442 | 1.07e-12 | 71.2 |
MS.gene026629.t1 | MTR_4g057730 | 34.228 | 149 | 82 | 6 | 422 | 564 | 307 | 445 | 2.96e-12 | 69.7 |
MS.gene026629.t1 | MTR_5g076240 | 48.193 | 83 | 37 | 3 | 503 | 585 | 391 | 467 | 3.23e-12 | 70.1 |
MS.gene026629.t1 | MTR_1g063120 | 31.707 | 164 | 99 | 6 | 428 | 586 | 321 | 476 | 3.45e-12 | 70.1 |
MS.gene026629.t1 | MTR_5g076200 | 40.952 | 105 | 56 | 3 | 489 | 593 | 378 | 476 | 1.44e-11 | 68.2 |
MS.gene026629.t1 | MTR_3g088870 | 33.333 | 180 | 92 | 9 | 422 | 585 | 323 | 490 | 1.49e-11 | 67.8 |
MS.gene026629.t1 | MTR_0161s0050 | 34.161 | 161 | 89 | 6 | 444 | 593 | 324 | 478 | 1.56e-11 | 67.8 |
MS.gene026629.t1 | MTR_3g064420 | 32.948 | 173 | 94 | 6 | 425 | 584 | 306 | 469 | 1.59e-11 | 67.8 |
MS.gene026629.t1 | MTR_1g090737 | 29.341 | 167 | 106 | 6 | 422 | 584 | 330 | 488 | 5.11e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026629.t1 | AT1G77590 | 72.166 | 697 | 187 | 4 | 1 | 696 | 1 | 691 | 0.0 | 1056 |
MS.gene026629.t1 | AT1G77590 | 78.976 | 547 | 112 | 1 | 150 | 696 | 2 | 545 | 0.0 | 915 |
MS.gene026629.t1 | AT2G04350 | 62.555 | 681 | 247 | 5 | 20 | 696 | 44 | 720 | 0.0 | 879 |
MS.gene026629.t1 | AT2G04350 | 62.555 | 681 | 247 | 5 | 20 | 696 | 44 | 720 | 0.0 | 879 |
MS.gene026629.t1 | AT5G27600 | 34.776 | 647 | 374 | 13 | 57 | 696 | 83 | 688 | 1.01e-122 | 382 |
MS.gene026629.t1 | AT3G05970 | 35.039 | 645 | 373 | 12 | 57 | 695 | 83 | 687 | 4.60e-115 | 362 |
MS.gene026629.t1 | AT2G47240 | 32.730 | 663 | 382 | 15 | 48 | 695 | 39 | 652 | 1.71e-97 | 315 |
MS.gene026629.t1 | AT2G47240 | 32.730 | 663 | 382 | 15 | 48 | 695 | 39 | 652 | 1.71e-97 | 315 |
MS.gene026629.t1 | AT2G47240 | 32.730 | 663 | 382 | 15 | 48 | 695 | 39 | 652 | 1.71e-97 | 315 |
MS.gene026629.t1 | AT2G47240 | 33.498 | 609 | 364 | 12 | 102 | 695 | 11 | 593 | 9.13e-97 | 311 |
MS.gene026629.t1 | AT4G11030 | 31.194 | 670 | 406 | 15 | 40 | 697 | 31 | 657 | 1.86e-96 | 312 |
MS.gene026629.t1 | AT1G49430 | 31.279 | 649 | 393 | 14 | 62 | 696 | 49 | 658 | 4.77e-95 | 308 |
MS.gene026629.t1 | AT4G23850 | 31.729 | 665 | 397 | 16 | 46 | 697 | 37 | 657 | 7.29e-95 | 308 |
MS.gene026629.t1 | AT1G64400 | 30.960 | 646 | 395 | 14 | 62 | 695 | 49 | 655 | 1.71e-93 | 304 |
MS.gene026629.t1 | AT1G49430 | 30.832 | 493 | 288 | 14 | 62 | 540 | 49 | 502 | 1.39e-62 | 218 |
MS.gene026629.t1 | AT3G23790 | 26.677 | 641 | 386 | 20 | 109 | 695 | 111 | 721 | 1.99e-44 | 170 |
MS.gene026629.t1 | AT4G14070 | 25.232 | 646 | 380 | 18 | 109 | 696 | 127 | 727 | 4.17e-42 | 164 |
MS.gene026629.t1 | AT4G19010 | 31.186 | 388 | 186 | 19 | 251 | 620 | 205 | 529 | 2.72e-28 | 120 |
MS.gene026629.t1 | AT1G20500 | 26.329 | 414 | 220 | 15 | 251 | 644 | 198 | 546 | 1.88e-21 | 99.4 |
MS.gene026629.t1 | AT1G20510 | 28.125 | 448 | 221 | 19 | 229 | 644 | 162 | 540 | 3.03e-20 | 95.5 |
MS.gene026629.t1 | AT1G20510 | 28.989 | 376 | 180 | 16 | 229 | 586 | 162 | 468 | 3.34e-19 | 91.7 |
MS.gene026629.t1 | AT1G65060 | 24.897 | 486 | 268 | 18 | 110 | 579 | 77 | 481 | 7.68e-19 | 91.3 |
MS.gene026629.t1 | AT1G65060 | 24.628 | 471 | 259 | 17 | 110 | 564 | 77 | 467 | 2.37e-18 | 89.4 |
MS.gene026629.t1 | AT1G20510 | 29.096 | 354 | 165 | 15 | 229 | 564 | 162 | 447 | 1.59e-17 | 86.7 |
MS.gene026629.t1 | AT1G51680 | 24.150 | 559 | 317 | 23 | 120 | 649 | 77 | 557 | 4.80e-17 | 85.5 |
MS.gene026629.t1 | AT5G16370 | 29.508 | 366 | 158 | 14 | 251 | 593 | 186 | 474 | 7.50e-17 | 84.7 |
MS.gene026629.t1 | AT1G51680 | 27.363 | 402 | 202 | 19 | 207 | 591 | 162 | 490 | 2.29e-16 | 83.2 |
MS.gene026629.t1 | AT1G51680 | 27.363 | 402 | 202 | 19 | 207 | 591 | 162 | 490 | 3.70e-16 | 82.4 |
MS.gene026629.t1 | AT4G05160 | 28.226 | 248 | 139 | 11 | 422 | 645 | 309 | 541 | 6.84e-16 | 81.6 |
MS.gene026629.t1 | AT5G16340 | 29.014 | 355 | 174 | 13 | 251 | 593 | 186 | 474 | 1.22e-15 | 80.9 |
MS.gene026629.t1 | AT1G75960 | 34.715 | 193 | 95 | 7 | 418 | 593 | 296 | 474 | 4.70e-14 | 75.9 |
MS.gene026629.t1 | AT3G48990 | 32.335 | 167 | 99 | 5 | 421 | 584 | 281 | 436 | 7.43e-14 | 75.1 |
MS.gene026629.t1 | AT1G21540 | 34.161 | 161 | 90 | 5 | 444 | 593 | 322 | 477 | 7.77e-14 | 75.1 |
MS.gene026629.t1 | AT1G20480 | 30.769 | 208 | 124 | 8 | 425 | 620 | 333 | 532 | 3.77e-13 | 73.2 |
MS.gene026629.t1 | AT1G77240 | 45.055 | 91 | 45 | 2 | 503 | 593 | 390 | 475 | 4.87e-13 | 72.8 |
MS.gene026629.t1 | AT3G21230 | 26.749 | 243 | 156 | 8 | 422 | 650 | 331 | 565 | 1.02e-12 | 71.6 |
MS.gene026629.t1 | AT3G21240 | 27.309 | 249 | 146 | 11 | 422 | 649 | 316 | 550 | 1.43e-12 | 71.2 |
MS.gene026629.t1 | AT1G21530 | 41.758 | 91 | 48 | 2 | 503 | 593 | 387 | 472 | 2.65e-12 | 70.5 |
MS.gene026629.t1 | AT1G21530 | 41.758 | 91 | 48 | 2 | 503 | 593 | 389 | 474 | 2.68e-12 | 70.5 |
MS.gene026629.t1 | AT3G21240 | 30.769 | 182 | 100 | 9 | 422 | 591 | 316 | 483 | 1.55e-11 | 67.8 |
MS.gene026629.t1 | AT3G21240 | 30.769 | 182 | 100 | 9 | 422 | 591 | 316 | 483 | 1.55e-11 | 67.8 |
MS.gene026629.t1 | AT3G21230 | 30.588 | 170 | 105 | 6 | 422 | 586 | 331 | 492 | 1.97e-11 | 67.8 |
MS.gene026629.t1 | AT3G21230 | 30.588 | 170 | 105 | 6 | 422 | 586 | 331 | 492 | 2.10e-11 | 67.4 |
Find 191 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTGGCGGTGCTCCCCTTTC+TGG | 0.196224 | 1.3:+16180380 | MS.gene026629:CDS |
TCTTCCTTGCTCATTTATTA+AGG | 0.207102 | 1.3:+16181509 | MS.gene026629:CDS |
TGAGTGGTTCCTTGCTCTTC+AGG | 0.218360 | 1.3:+16177277 | MS.gene026629:CDS |
TGTTCCCAAACTTGAGAAAA+AGG | 0.223387 | 1.3:+16179404 | MS.gene026629:CDS |
TTCTGCTTCAGGGTTGTTTC+AGG | 0.236650 | 1.3:+16178410 | MS.gene026629:intron |
TGTGTTGATGCCAACTTTAT+TGG | 0.245256 | 1.3:+16179705 | MS.gene026629:CDS |
AATCAAGGAATTCCTTATTC+AGG | 0.263628 | 1.3:+16183244 | MS.gene026629:CDS |
GGGGATTGGAGAAGGCTCTC+TGG | 0.278772 | 1.3:+16180297 | MS.gene026629:CDS |
AGGAGGTTGAAAGCAGTTAA+TGG | 0.295468 | 1.3:+16180257 | MS.gene026629:CDS |
TGATCGTCCGCGGAGTTTAC+TGG | 0.297128 | 1.3:-16176930 | None:intergenic |
AGAAATCATTGATCGTAAAA+AGG | 0.325053 | 1.3:+16182537 | MS.gene026629:CDS |
AGACCATATCCTTGACCTAT+TGG | 0.336719 | 1.3:-16181417 | None:intergenic |
GCAGTTAATGGAAGCTGGTT+TGG | 0.349164 | 1.3:+16180269 | MS.gene026629:CDS |
TGCTAGTGGTTTGGCTGTGT+TGG | 0.354855 | 1.3:+16177208 | MS.gene026629:CDS |
TTAGTTAAATATCCACCTTC+AGG | 0.376720 | 1.3:-16182027 | None:intergenic |
TACTGGAACTCCACGGCGTT+TGG | 0.377744 | 1.3:-16176913 | None:intergenic |
GGGATTGGAGAAGGCTCTCT+GGG | 0.383295 | 1.3:+16180298 | MS.gene026629:CDS |
ATGGAAGCTGGTTTGGAGCC+TGG | 0.384214 | 1.3:+16180276 | MS.gene026629:CDS |
ATGGAAAGGATGAGAGGGTT+GGG | 0.386145 | 1.3:+16177234 | MS.gene026629:CDS |
GTTGGGATACCTATAGGATA+TGG | 0.388445 | 1.3:+16179619 | MS.gene026629:CDS |
CCTCGTGGAGAAATTGTAAT+TGG | 0.388867 | 1.3:+16182063 | MS.gene026629:CDS |
TGTAACGATGTATGCATCAT+TGG | 0.392960 | 1.3:+16178447 | MS.gene026629:CDS |
ATAACTTCAGAAGATCTTCC+TGG | 0.394589 | 1.3:-16184005 | None:intergenic |
TCTGAAGTTATACGCTTCAT+AGG | 0.395208 | 1.3:+16184017 | MS.gene026629:CDS |
TGCGGCTAGGTTGATGAAAA+AGG | 0.395377 | 1.3:+16182460 | MS.gene026629:intron |
GATCCATGGACACCTGAGTC+TGG | 0.398942 | 1.3:+16183931 | MS.gene026629:CDS |
CTCAGTCCACATTGGAAGAA+TGG | 0.398978 | 1.3:+16183215 | MS.gene026629:CDS |
TGGAAGCTGGTTTGGAGCCT+GGG | 0.403407 | 1.3:+16180277 | MS.gene026629:CDS |
GGAAGCAAAGAAAGCTCGTT+TGG | 0.403415 | 1.3:+16183870 | MS.gene026629:intron |
TCTGAGATTTGCTAGTGGTT+TGG | 0.409688 | 1.3:+16177199 | MS.gene026629:CDS |
TTAAATTGCTTTCTGATCCA+TGG | 0.411441 | 1.3:+16183917 | MS.gene026629:CDS |
CAAGTGCCACACAGTAACTA+TGG | 0.413049 | 1.3:-16183183 | None:intergenic |
GCATGGAGAGTATGTTTCCT+TGG | 0.413823 | 1.3:+16182576 | MS.gene026629:CDS |
CTGCTGAGTATCACCAGAAA+GGG | 0.422987 | 1.3:-16180393 | None:intergenic |
GCTAGTGGTTTGGCTGTGTT+GGG | 0.423572 | 1.3:+16177209 | MS.gene026629:CDS |
TGGAGTGGTTAGTTCGGAAC+AGG | 0.428624 | 1.3:-16176893 | None:intergenic |
TCAGTCCACATTGGAAGAAT+GGG | 0.429822 | 1.3:+16183216 | MS.gene026629:CDS |
AGTGGTTGTTTCGAAGGAAA+TGG | 0.431521 | 1.3:+16177085 | MS.gene026629:CDS |
CTGGTTTGGAGCCTGGGGAT+TGG | 0.432080 | 1.3:+16180283 | MS.gene026629:CDS |
TGGAGCCTGGGGATTGGAGA+AGG | 0.435820 | 1.3:+16180289 | MS.gene026629:CDS |
AACATTATATTGTCCACATA+GGG | 0.443303 | 1.3:-16183145 | None:intergenic |
ATGATAACTGCAACATCAGC+TGG | 0.443496 | 1.3:-16178842 | None:intergenic |
ATACCTCAGCTGCTAGTTCA+AGG | 0.446682 | 1.3:-16179461 | None:intergenic |
AAGATTAAGAAAGGAACAAA+GGG | 0.448860 | 1.3:+16179673 | MS.gene026629:CDS |
GGCCGTCAGAAAGACTTTCC+AGG | 0.457546 | 1.3:+16183987 | MS.gene026629:CDS |
CGCATCCGTTTCATACTGTC+TGG | 0.460106 | 1.3:+16180362 | MS.gene026629:CDS |
AAAGGAGATCCATATCCTAT+AGG | 0.461389 | 1.3:-16179628 | None:intergenic |
CATGGAAAGGATGAGAGGGT+TGG | 0.461442 | 1.3:+16177233 | MS.gene026629:CDS |
GGCGTTTGGAGTGGTTAGTT+CGG | 0.463794 | 1.3:-16176899 | None:intergenic |
CATGGAGAGTATGTTTCCTT+GGG | 0.466180 | 1.3:+16182577 | MS.gene026629:CDS |
TGCTTTCAACCTCCTCTCAT+AGG | 0.467574 | 1.3:-16180249 | None:intergenic |
CCTCATCTGTTGGACACGGC+TGG | 0.471706 | 1.3:+16178750 | MS.gene026629:CDS |
GCAGCAGTTGGGATACCTAT+AGG | 0.472722 | 1.3:+16179613 | MS.gene026629:CDS |
ATGTATACAAGTGGAAGTAC+TGG | 0.474903 | 1.3:+16178863 | MS.gene026629:CDS |
CAGTTCATCAATATCTGTCT+TGG | 0.475583 | 1.3:+16180413 | MS.gene026629:CDS |
AGAGGTAAATCAGCATCAAC+AGG | 0.476714 | 1.3:-16178818 | None:intergenic |
CCATCTGATGCCTCATCTGT+TGG | 0.477457 | 1.3:+16178740 | MS.gene026629:CDS |
ACAATTTCTCCACGAGGCAT+TGG | 0.478544 | 1.3:-16182057 | None:intergenic |
AAGTAACCAAGAGTGACATT+TGG | 0.478964 | 1.3:-16182090 | None:intergenic |
CTTCGCCGGTGGAGACGGCA+TGG | 0.479046 | 1.3:+16176985 | MS.gene026629:CDS |
TGAAAGCAGTTAATGGAAGC+TGG | 0.480204 | 1.3:+16180264 | MS.gene026629:CDS |
GAAGAATGGGCTTCAAATCA+AGG | 0.482234 | 1.3:+16183229 | MS.gene026629:CDS |
AACAGGAGAGTTGCGAGGAT+GGG | 0.487307 | 1.3:-16176876 | None:intergenic |
TAGAATTTGATGGCAGCAGT+TGG | 0.491226 | 1.3:+16179601 | MS.gene026629:intron |
CCAATGTAGGTGAATGCAAC+GGG | 0.492645 | 1.3:+16180197 | MS.gene026629:intron |
TTGAATTGGGTGAGTATGAA+TGG | 0.493545 | 1.3:+16177147 | MS.gene026629:CDS |
AAAACACTTGTAAATATTAG+CGG | 0.496596 | 1.3:+16178671 | MS.gene026629:CDS |
CAACATTATATTGTCCACAT+AGG | 0.498047 | 1.3:-16183146 | None:intergenic |
GGTGGTCCAAATGTCACTCT+TGG | 0.500524 | 1.3:+16182084 | MS.gene026629:CDS |
TGGTTCTACACTGGTGACAT+AGG | 0.500937 | 1.3:+16182490 | MS.gene026629:CDS |
TTTATGTCACTCATTGAATG+AGG | 0.503431 | 1.3:+16178480 | MS.gene026629:CDS |
GTAACGATGTATGCATCATT+GGG | 0.503568 | 1.3:+16178448 | MS.gene026629:CDS |
TTACTGTGTGGCACTTGTTG+TGG | 0.503677 | 1.3:+16183189 | MS.gene026629:CDS |
GAGTATGATGGTGACAATGT+AGG | 0.503858 | 1.3:-16176853 | None:intergenic |
TTAATAAATGAGCAAGGAAG+AGG | 0.507013 | 1.3:-16181507 | None:intergenic |
GATGTATCTGTGAGGGTCAA+AGG | 0.507460 | 1.3:-16179646 | None:intergenic |
GTCATTTCCAGTGCTCCAAT+AGG | 0.507815 | 1.3:+16181402 | MS.gene026629:intron |
ATTTGCTTCGCCGGTGGAGA+CGG | 0.509942 | 1.3:+16176980 | MS.gene026629:CDS |
ATGGAGAAGAGTGGTGGTGA+TGG | 0.510454 | 1.3:+16177104 | MS.gene026629:CDS |
GCTCCAATAGGTCAAGGATA+TGG | 0.512887 | 1.3:+16181414 | MS.gene026629:CDS |
AGTATGATGGTGACAATGTA+GGG | 0.514432 | 1.3:-16176852 | None:intergenic |
AGTTCATCAATATCTGTCTT+GGG | 0.515096 | 1.3:+16180414 | MS.gene026629:CDS |
TTTGCAGATGTTAAGCGACT+TGG | 0.516699 | 1.3:+16178785 | MS.gene026629:CDS |
ACAGGAGAGTTGCGAGGATG+GGG | 0.517085 | 1.3:-16176875 | None:intergenic |
GGCTGTGTTGGGACATGGAA+AGG | 0.517980 | 1.3:+16177220 | MS.gene026629:CDS |
GAACAGGAGAGTTGCGAGGA+TGG | 0.520081 | 1.3:-16176877 | None:intergenic |
AACAAGAGTGGTTGTTTCGA+AGG | 0.522687 | 1.3:+16177079 | MS.gene026629:CDS |
CGAACACGGTCAAGAATTGC+TGG | 0.522952 | 1.3:-16179736 | None:intergenic |
AGAATTTGATGGCAGCAGTT+GGG | 0.524314 | 1.3:+16179602 | MS.gene026629:intron |
GAGAAGAGTGGTGGTGATGG+TGG | 0.532291 | 1.3:+16177107 | MS.gene026629:CDS |
AAGCCAGACTCAGGTGTCCA+TGG | 0.533358 | 1.3:-16183934 | None:intergenic |
ACATCAAGCAAGATTAAGAA+AGG | 0.535370 | 1.3:+16179664 | MS.gene026629:CDS |
GTAAACTCCGCGGACGATCA+AGG | 0.536566 | 1.3:+16176933 | MS.gene026629:CDS |
CCTTCCCATGCCGTCTCCAC+CGG | 0.538531 | 1.3:-16176990 | None:intergenic |
GGTTTGGCTGTGTTGGGACA+TGG | 0.539640 | 1.3:+16177215 | MS.gene026629:CDS |
CCAACAGATGAGGCATCAGA+TGG | 0.541242 | 1.3:-16178740 | None:intergenic |
CGTGGAGAAATTGTAATTGG+TGG | 0.547343 | 1.3:+16182066 | MS.gene026629:CDS |
ATAGGGAGGTTTCATCAAGA+TGG | 0.548115 | 1.3:+16182508 | MS.gene026629:CDS |
TTGCTGATACTAGGGTTGAG+TGG | 0.550542 | 1.3:+16177261 | MS.gene026629:CDS |
GATACATCTGTTGGCCGTGT+TGG | 0.550940 | 1.3:+16181480 | MS.gene026629:CDS |
AGAGTATGTTTCCTTGGGAA+AGG | 0.550970 | 1.3:+16182582 | MS.gene026629:CDS |
GCATACGGAGAGATTACTGT+TGG | 0.551893 | 1.3:+16177055 | MS.gene026629:CDS |
AATTGTTTGAAGAAGCATGC+AGG | 0.551968 | 1.3:+16177030 | MS.gene026629:CDS |
GGTACAGCAGCCAATAAAGT+TGG | 0.552940 | 1.3:-16179715 | None:intergenic |
GAGAGCCTTCTCCAATCCCC+AGG | 0.553126 | 1.3:-16180294 | None:intergenic |
CCACACAGTAACTATGGAAA+GGG | 0.553679 | 1.3:-16183177 | None:intergenic |
CAAGATTAAGAAAGGAACAA+AGG | 0.555027 | 1.3:+16179672 | MS.gene026629:CDS |
GGTGCATGCATCACTAGTAA+AGG | 0.555060 | 1.3:+16183306 | MS.gene026629:CDS |
AGGTCACGACAGTAATTTGT+GGG | 0.556939 | 1.3:+16178636 | MS.gene026629:CDS |
CACCGCCAGACAGTATGAAA+CGG | 0.564677 | 1.3:-16180367 | None:intergenic |
GGTTCTACACTGGTGACATA+GGG | 0.565337 | 1.3:+16182491 | MS.gene026629:CDS |
ACTGCTGAGTATCACCAGAA+AGG | 0.570535 | 1.3:-16180394 | None:intergenic |
ATTCTTGACCGTGTTCGCGA+TGG | 0.574052 | 1.3:+16179742 | MS.gene026629:CDS |
TGCGAGGATGGGGAGTATGA+TGG | 0.575752 | 1.3:-16176865 | None:intergenic |
CAGAAGATTTGCTTCGCCGG+TGG | 0.575937 | 1.3:+16176974 | MS.gene026629:CDS |
CCGGTGGAGACGGCATGGGA+AGG | 0.576169 | 1.3:+16176990 | MS.gene026629:CDS |
TGGAAGTACTGGATTACCTA+AGG | 0.576756 | 1.3:+16178874 | MS.gene026629:CDS |
TTCCTGGAAAGTCTTTCTGA+CGG | 0.577666 | 1.3:-16183989 | None:intergenic |
AGTTCAAGGATATGAGCCAT+TGG | 0.579034 | 1.3:-16179447 | None:intergenic |
TGAACACACCATCGCGAACA+CGG | 0.581298 | 1.3:-16179750 | None:intergenic |
GCAGTGACTAAGCCAGACTC+AGG | 0.581299 | 1.3:-16183943 | None:intergenic |
AGAAGCATGCAGGAAGCATA+CGG | 0.584187 | 1.3:+16177040 | MS.gene026629:CDS |
TAGCTAATCGACTGGCCTGA+AGG | 0.584227 | 1.3:+16182012 | MS.gene026629:intron |
GCAGTTATCATGTATACAAG+TGG | 0.584330 | 1.3:+16178854 | MS.gene026629:CDS |
TCCAGTGCTCCAATAGGTCA+AGG | 0.584850 | 1.3:+16181408 | MS.gene026629:intron |
TTTACCTTAATAAATGAGCA+AGG | 0.585073 | 1.3:-16181513 | None:intergenic |
TGTGGCTTCTCAGTCCACAT+TGG | 0.586175 | 1.3:+16183207 | MS.gene026629:CDS |
GGGACATGGAAAGGATGAGA+GGG | 0.587034 | 1.3:+16177229 | MS.gene026629:CDS |
ATTACTGTTGGGAACAAGAG+TGG | 0.589151 | 1.3:+16177067 | MS.gene026629:CDS |
GATGTATGCATCATTGGGAG+AGG | 0.590579 | 1.3:+16178453 | MS.gene026629:CDS |
TTCGCCGGTGGAGACGGCAT+GGG | 0.591329 | 1.3:+16176986 | MS.gene026629:CDS |
GCCAATGTAGGTGAATGCAA+CGG | 0.592102 | 1.3:+16180196 | MS.gene026629:intron |
GAACAGAAGATTTGCTTCGC+CGG | 0.592463 | 1.3:+16176971 | MS.gene026629:CDS |
GCCACACAGTAACTATGGAA+AGG | 0.592809 | 1.3:-16183178 | None:intergenic |
AAAATCCGAGCAATTCTTGG+TGG | 0.592932 | 1.3:+16180338 | MS.gene026629:CDS |
GGAAGGAGTGAGTACATTGG+CGG | 0.594382 | 1.3:+16177007 | MS.gene026629:CDS |
ACTGCAACATCAGCTGGGAG+AGG | 0.595197 | 1.3:-16178836 | None:intergenic |
TCGAAGGAAATGGAGAAGAG+TGG | 0.595299 | 1.3:+16177095 | MS.gene026629:CDS |
CTAATCGACTGGCCTGAAGG+TGG | 0.598093 | 1.3:+16182015 | MS.gene026629:CDS |
TCTTATTGTCAGCCCCTATG+TGG | 0.599891 | 1.3:+16183132 | MS.gene026629:CDS |
TGGGACATGGAAAGGATGAG+AGG | 0.600615 | 1.3:+16177228 | MS.gene026629:CDS |
TTAGTATCATACCTTTCCCA+AGG | 0.600980 | 1.3:-16182593 | None:intergenic |
TTTATTTAGCCTATGAGAGG+AGG | 0.601307 | 1.3:+16180240 | MS.gene026629:CDS |
GGTCTTACAGAGACTTGTGC+TGG | 0.601412 | 1.3:+16181435 | MS.gene026629:CDS |
AAGTCGCTTAACATCTGCAA+AGG | 0.603112 | 1.3:-16178783 | None:intergenic |
CCCTTTCCATAGTTACTGTG+TGG | 0.606415 | 1.3:+16183177 | MS.gene026629:CDS |
GAACTCCACGGCGTTTGGAG+TGG | 0.607427 | 1.3:-16176908 | None:intergenic |
GGAAGCTGGTTTGGAGCCTG+GGG | 0.608440 | 1.3:+16180278 | MS.gene026629:CDS |
TGCGACCACCAAGAATTGCT+CGG | 0.608998 | 1.3:-16180343 | None:intergenic |
TGCTCTCAAGCTCAAGAGAG+AGG | 0.609631 | 1.3:+16183966 | MS.gene026629:CDS |
TCGCGATGGTGTGTTCAAGA+AGG | 0.610256 | 1.3:+16179756 | MS.gene026629:CDS |
TATCCTTGAACTAGCAGCTG+AGG | 0.611422 | 1.3:+16179458 | MS.gene026629:CDS |
ATATCTAGCATACTTGCCAA+TGG | 0.611559 | 1.3:+16179431 | MS.gene026629:CDS |
GGAATGAGATGGTTCTACAC+TGG | 0.616046 | 1.3:+16182481 | MS.gene026629:CDS |
GACATTGTTAAACTGCAGCA+TGG | 0.618080 | 1.3:+16182559 | MS.gene026629:CDS |
CTCTAAAGAAGAAAGCATCA+AGG | 0.618470 | 1.3:+16183282 | MS.gene026629:CDS |
TCTACACTGGTGACATAGGG+AGG | 0.620080 | 1.3:+16182494 | MS.gene026629:CDS |
ATAAATGAGCAAGGAAGAGG+AGG | 0.620903 | 1.3:-16181504 | None:intergenic |
GAGGTCACGACAGTAATTTG+TGG | 0.621092 | 1.3:+16178635 | MS.gene026629:CDS |
CTTACAGAGACTTGTGCTGG+TGG | 0.623479 | 1.3:+16181438 | MS.gene026629:CDS |
TGATAACTGCAACATCAGCT+GGG | 0.625199 | 1.3:-16178841 | None:intergenic |
AAGGAAATGGAGAAGAGTGG+TGG | 0.626690 | 1.3:+16177098 | MS.gene026629:CDS |
CATACGGAGAGATTACTGTT+GGG | 0.628004 | 1.3:+16177056 | MS.gene026629:CDS |
CTTGCTTGATGTATCTGTGA+GGG | 0.628466 | 1.3:-16179653 | None:intergenic |
CAACAGATGAGGCATCAGAT+GGG | 0.637208 | 1.3:-16178739 | None:intergenic |
AATGACTCGCCAATGCCTCG+TGG | 0.642641 | 1.3:+16182048 | MS.gene026629:CDS |
TGAAGCCCATTCTTCCAATG+TGG | 0.643581 | 1.3:-16183221 | None:intergenic |
TCTTGCTTGATGTATCTGTG+AGG | 0.651294 | 1.3:-16179654 | None:intergenic |
CCAGCCGTGTCCAACAGATG+AGG | 0.653025 | 1.3:-16178750 | None:intergenic |
GGTGTTCTGAGATTTGCTAG+TGG | 0.655548 | 1.3:+16177194 | MS.gene026629:CDS |
ACATTATATTGTCCACATAG+GGG | 0.657865 | 1.3:-16183144 | None:intergenic |
AGTGAAACGTGTGATATGCA+TGG | 0.659671 | 1.3:+16178706 | MS.gene026629:CDS |
GATGCCTCATCTGTTGGACA+CGG | 0.661876 | 1.3:+16178746 | MS.gene026629:CDS |
CGGAGTTTACTGGAACTCCA+CGG | 0.663555 | 1.3:-16176920 | None:intergenic |
CACACCGCCTTGATCGTCCG+CGG | 0.663810 | 1.3:-16176940 | None:intergenic |
AATTACGAACCTGAAGAGCA+AGG | 0.664494 | 1.3:-16177286 | None:intergenic |
TTCGGAACAGGAGAGTTGCG+AGG | 0.664756 | 1.3:-16176881 | None:intergenic |
ATCAAGGCGGTGTGACAGTG+CGG | 0.666236 | 1.3:+16176949 | MS.gene026629:CDS |
AAAGACAAAAGAATCATACA+AGG | 0.668435 | 1.3:+16182125 | MS.gene026629:CDS |
AAGGAAGAGGAGGTCCAACA+CGG | 0.670202 | 1.3:-16181494 | None:intergenic |
ATCCGTTTCATACTGTCTGG+CGG | 0.670954 | 1.3:+16180365 | MS.gene026629:CDS |
TGCTGAGTATCACCAGAAAG+GGG | 0.679172 | 1.3:-16180392 | None:intergenic |
ATGGGAAGGAGTGAGTACAT+TGG | 0.682317 | 1.3:+16177004 | MS.gene026629:CDS |
CCAATTACAATTTCTCCACG+AGG | 0.687033 | 1.3:-16182063 | None:intergenic |
ATGTAGGTGAATGCAACGGG+AGG | 0.694846 | 1.3:+16180200 | MS.gene026629:intron |
ACTAACCACTCCAAACGCCG+TGG | 0.699245 | 1.3:+16176903 | MS.gene026629:CDS |
GATTAAGAAAGGAACAAAGG+GGG | 0.703898 | 1.3:+16179675 | MS.gene026629:CDS |
AGATTAAGAAAGGAACAAAG+GGG | 0.717002 | 1.3:+16179674 | MS.gene026629:CDS |
TAAAGAAGAAAGCATCAAGG+AGG | 0.735856 | 1.3:+16183285 | MS.gene026629:CDS |
TGGAGTTCCAGTAAACTCCG+CGG | 0.773211 | 1.3:+16176923 | MS.gene026629:CDS |
AACTCCGCGGACGATCAAGG+CGG | 0.776940 | 1.3:+16176936 | MS.gene026629:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 16176846 | 16184038 | 16176846 | ID=MS.gene026629 |
chr1.3 | mRNA | 16176846 | 16184038 | 16176846 | ID=MS.gene026629.t1;Parent=MS.gene026629 |
chr1.3 | exon | 16176846 | 16177298 | 16176846 | ID=MS.gene026629.t1.exon1;Parent=MS.gene026629.t1 |
chr1.3 | CDS | 16176846 | 16177298 | 16176846 | ID=cds.MS.gene026629.t1;Parent=MS.gene026629.t1 |
chr1.3 | exon | 16178421 | 16178501 | 16178421 | ID=MS.gene026629.t1.exon2;Parent=MS.gene026629.t1 |
chr1.3 | CDS | 16178421 | 16178501 | 16178421 | ID=cds.MS.gene026629.t1;Parent=MS.gene026629.t1 |
chr1.3 | exon | 16178632 | 16178895 | 16178632 | ID=MS.gene026629.t1.exon3;Parent=MS.gene026629.t1 |
chr1.3 | CDS | 16178632 | 16178895 | 16178632 | ID=cds.MS.gene026629.t1;Parent=MS.gene026629.t1 |
chr1.3 | exon | 16179348 | 16179479 | 16179348 | ID=MS.gene026629.t1.exon4;Parent=MS.gene026629.t1 |
chr1.3 | CDS | 16179348 | 16179479 | 16179348 | ID=cds.MS.gene026629.t1;Parent=MS.gene026629.t1 |
chr1.3 | exon | 16179604 | 16179777 | 16179604 | ID=MS.gene026629.t1.exon5;Parent=MS.gene026629.t1 |
chr1.3 | CDS | 16179604 | 16179777 | 16179604 | ID=cds.MS.gene026629.t1;Parent=MS.gene026629.t1 |
chr1.3 | exon | 16180206 | 16180435 | 16180206 | ID=MS.gene026629.t1.exon6;Parent=MS.gene026629.t1 |
chr1.3 | CDS | 16180206 | 16180435 | 16180206 | ID=cds.MS.gene026629.t1;Parent=MS.gene026629.t1 |
chr1.3 | exon | 16181413 | 16181530 | 16181413 | ID=MS.gene026629.t1.exon7;Parent=MS.gene026629.t1 |
chr1.3 | CDS | 16181413 | 16181530 | 16181413 | ID=cds.MS.gene026629.t1;Parent=MS.gene026629.t1 |
chr1.3 | exon | 16182015 | 16182146 | 16182015 | ID=MS.gene026629.t1.exon8;Parent=MS.gene026629.t1 |
chr1.3 | CDS | 16182015 | 16182146 | 16182015 | ID=cds.MS.gene026629.t1;Parent=MS.gene026629.t1 |
chr1.3 | exon | 16182469 | 16182603 | 16182469 | ID=MS.gene026629.t1.exon9;Parent=MS.gene026629.t1 |
chr1.3 | CDS | 16182469 | 16182603 | 16182469 | ID=cds.MS.gene026629.t1;Parent=MS.gene026629.t1 |
chr1.3 | exon | 16183121 | 16183327 | 16183121 | ID=MS.gene026629.t1.exon10;Parent=MS.gene026629.t1 |
chr1.3 | CDS | 16183121 | 16183327 | 16183121 | ID=cds.MS.gene026629.t1;Parent=MS.gene026629.t1 |
chr1.3 | exon | 16183871 | 16184038 | 16183871 | ID=MS.gene026629.t1.exon11;Parent=MS.gene026629.t1 |
chr1.3 | CDS | 16183871 | 16184038 | 16183871 | ID=cds.MS.gene026629.t1;Parent=MS.gene026629.t1 |
Gene Sequence |
Protein sequence |