Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072726.t1 | KEH27413.1 | 94.3 | 647 | 11 | 2 | 1 | 621 | 1 | 647 | 0.00E+00 | 1241.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072726.t1 | Q9T0A0 | 72.6 | 645 | 151 | 2 | 3 | 621 | 4 | 648 | 4.3e-288 | 991.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072726.t1 | A0A072UEB6 | 94.3 | 647 | 11 | 2 | 1 | 621 | 1 | 647 | 0.0e+00 | 1241.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049190 | MS.gene072726 | 0.80391 | 2.78E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072726.t1 | MTR_5g009350 | 94.281 | 647 | 11 | 2 | 1 | 621 | 1 | 647 | 0.0 | 1245 |
MS.gene072726.t1 | MTR_5g009350 | 94.281 | 647 | 11 | 2 | 1 | 621 | 1 | 647 | 0.0 | 1245 |
MS.gene072726.t1 | MTR_5g009360 | 93.972 | 647 | 13 | 2 | 1 | 621 | 1 | 647 | 0.0 | 1239 |
MS.gene072726.t1 | MTR_5g009350 | 94.765 | 554 | 18 | 1 | 1 | 543 | 1 | 554 | 0.0 | 1076 |
MS.gene072726.t1 | MTR_5g009350 | 95.971 | 546 | 11 | 1 | 1 | 535 | 1 | 546 | 0.0 | 1074 |
MS.gene072726.t1 | MTR_8g099420 | 73.913 | 644 | 142 | 2 | 4 | 621 | 5 | 648 | 0.0 | 1024 |
MS.gene072726.t1 | MTR_5g009360 | 91.137 | 519 | 20 | 2 | 129 | 621 | 3 | 521 | 0.0 | 955 |
MS.gene072726.t1 | MTR_4g068670 | 57.165 | 642 | 247 | 4 | 6 | 621 | 5 | 644 | 0.0 | 760 |
MS.gene072726.t1 | MTR_1g034360 | 55.365 | 643 | 259 | 4 | 6 | 621 | 5 | 646 | 0.0 | 740 |
MS.gene072726.t1 | MTR_7g109830 | 50.932 | 644 | 290 | 2 | 4 | 621 | 2 | 645 | 0.0 | 660 |
MS.gene072726.t1 | MTR_1g086600 | 48.452 | 646 | 305 | 3 | 4 | 621 | 24 | 669 | 0.0 | 629 |
MS.gene072726.t1 | MTR_1g104810 | 39.303 | 603 | 325 | 10 | 48 | 620 | 18 | 609 | 1.11e-135 | 410 |
MS.gene072726.t1 | MTR_1g104810 | 39.152 | 613 | 332 | 10 | 38 | 620 | 75 | 676 | 1.52e-135 | 412 |
MS.gene072726.t1 | MTR_3g087980 | 31.280 | 633 | 368 | 14 | 48 | 621 | 61 | 685 | 2.26e-94 | 305 |
MS.gene072726.t1 | MTR_3g082660 | 32.466 | 653 | 375 | 14 | 24 | 616 | 68 | 714 | 1.88e-93 | 303 |
MS.gene072726.t1 | MTR_1g030290 | 31.882 | 643 | 364 | 16 | 42 | 621 | 56 | 687 | 1.54e-90 | 295 |
MS.gene072726.t1 | MTR_3g084450 | 26.094 | 663 | 370 | 24 | 48 | 621 | 81 | 712 | 3.38e-39 | 154 |
MS.gene072726.t1 | MTR_3g084470 | 25.802 | 655 | 379 | 25 | 48 | 621 | 79 | 707 | 2.45e-36 | 145 |
MS.gene072726.t1 | MTR_8g083170 | 25.077 | 650 | 395 | 21 | 48 | 621 | 83 | 716 | 1.29e-34 | 140 |
MS.gene072726.t1 | MTR_3g084450 | 27.426 | 474 | 252 | 18 | 220 | 621 | 51 | 504 | 5.52e-30 | 124 |
MS.gene072726.t1 | MTR_5g007640 | 27.651 | 481 | 268 | 17 | 77 | 538 | 95 | 514 | 1.40e-25 | 112 |
MS.gene072726.t1 | MTR_1g063110 | 26.796 | 362 | 205 | 15 | 193 | 538 | 158 | 475 | 6.50e-25 | 109 |
MS.gene072726.t1 | MTR_4g057730 | 27.879 | 330 | 181 | 12 | 220 | 538 | 186 | 469 | 1.16e-22 | 102 |
MS.gene072726.t1 | MTR_4g057730 | 27.879 | 330 | 181 | 12 | 220 | 538 | 186 | 469 | 1.26e-22 | 102 |
MS.gene072726.t1 | MTR_3g035130 | 23.767 | 446 | 275 | 12 | 74 | 511 | 28 | 416 | 2.65e-21 | 98.2 |
MS.gene072726.t1 | MTR_4g057730 | 28.053 | 303 | 162 | 11 | 220 | 511 | 186 | 443 | 2.71e-21 | 97.4 |
MS.gene072726.t1 | MTR_3g035130 | 23.991 | 446 | 274 | 12 | 74 | 511 | 28 | 416 | 3.19e-21 | 97.4 |
MS.gene072726.t1 | MTR_1g063120 | 28.613 | 346 | 191 | 16 | 205 | 538 | 178 | 479 | 6.09e-21 | 97.4 |
MS.gene072726.t1 | MTR_4g077900 | 25.275 | 455 | 273 | 16 | 91 | 533 | 1 | 400 | 2.31e-20 | 95.1 |
MS.gene072726.t1 | MTR_2g095510 | 28.612 | 353 | 182 | 15 | 199 | 533 | 161 | 461 | 2.36e-20 | 95.5 |
MS.gene072726.t1 | MTR_2g095510 | 29.305 | 331 | 165 | 15 | 199 | 511 | 161 | 440 | 1.62e-19 | 92.0 |
MS.gene072726.t1 | MTR_3g088870 | 26.847 | 406 | 246 | 12 | 144 | 538 | 120 | 485 | 1.32e-18 | 90.1 |
MS.gene072726.t1 | MTR_3g088880 | 26.667 | 405 | 245 | 15 | 144 | 538 | 121 | 483 | 1.85e-18 | 89.7 |
MS.gene072726.t1 | MTR_4g011790 | 25.971 | 489 | 288 | 19 | 80 | 540 | 89 | 531 | 2.12e-18 | 89.4 |
MS.gene072726.t1 | MTR_5g027500 | 26.357 | 387 | 216 | 13 | 179 | 533 | 141 | 490 | 2.18e-18 | 89.4 |
MS.gene072726.t1 | MTR_4g005750 | 25.105 | 474 | 281 | 17 | 80 | 538 | 54 | 468 | 1.47e-17 | 86.7 |
MS.gene072726.t1 | MTR_8g074120 | 26.218 | 431 | 214 | 22 | 200 | 585 | 114 | 485 | 1.55e-17 | 86.3 |
MS.gene072726.t1 | MTR_4g011790 | 24.395 | 496 | 278 | 18 | 80 | 540 | 89 | 522 | 2.57e-17 | 86.3 |
MS.gene072726.t1 | MTR_4g011790 | 24.395 | 496 | 278 | 18 | 80 | 540 | 89 | 522 | 2.66e-17 | 86.3 |
MS.gene072726.t1 | MTR_1g090737 | 27.554 | 323 | 189 | 13 | 216 | 533 | 206 | 488 | 6.64e-17 | 84.7 |
MS.gene072726.t1 | MTR_3g460770 | 26.781 | 351 | 201 | 16 | 201 | 538 | 161 | 468 | 8.94e-17 | 84.3 |
MS.gene072726.t1 | MTR_2g105570 | 25.098 | 510 | 301 | 20 | 57 | 545 | 33 | 482 | 1.78e-16 | 83.2 |
MS.gene072726.t1 | MTR_5g023730 | 23.695 | 498 | 295 | 19 | 68 | 540 | 35 | 472 | 5.09e-16 | 81.6 |
MS.gene072726.t1 | MTR_8g074040 | 23.124 | 493 | 279 | 22 | 75 | 533 | 81 | 507 | 4.20e-15 | 79.0 |
MS.gene072726.t1 | MTR_5g008820 | 25.071 | 351 | 195 | 12 | 214 | 544 | 170 | 472 | 4.23e-15 | 79.0 |
MS.gene072726.t1 | MTR_3g064420 | 22.549 | 510 | 289 | 18 | 80 | 553 | 41 | 480 | 8.19e-15 | 78.2 |
MS.gene072726.t1 | MTR_4g128337 | 24.259 | 540 | 299 | 24 | 27 | 538 | 18 | 475 | 1.50e-14 | 77.0 |
MS.gene072726.t1 | MTR_1569s0010 | 26.410 | 390 | 224 | 15 | 222 | 600 | 181 | 518 | 9.81e-14 | 74.7 |
MS.gene072726.t1 | MTR_8g074040 | 23.326 | 433 | 239 | 18 | 133 | 533 | 18 | 389 | 1.05e-13 | 74.3 |
MS.gene072726.t1 | MTR_1g073180 | 31.325 | 166 | 109 | 5 | 375 | 538 | 321 | 483 | 6.06e-13 | 72.0 |
MS.gene072726.t1 | MTR_1g073180 | 31.325 | 166 | 109 | 5 | 375 | 538 | 299 | 461 | 6.74e-13 | 72.0 |
MS.gene072726.t1 | MTR_1g026310 | 24.149 | 323 | 192 | 11 | 221 | 533 | 203 | 482 | 1.01e-12 | 71.2 |
MS.gene072726.t1 | MTR_8g039720 | 24.845 | 322 | 193 | 11 | 220 | 533 | 205 | 485 | 1.37e-11 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072726.t1 | AT4G23850 | 72.558 | 645 | 151 | 2 | 3 | 621 | 4 | 648 | 0.0 | 994 |
MS.gene072726.t1 | AT4G11030 | 72.446 | 646 | 152 | 2 | 2 | 621 | 3 | 648 | 0.0 | 990 |
MS.gene072726.t1 | AT1G64400 | 71.605 | 648 | 157 | 3 | 1 | 621 | 1 | 648 | 0.0 | 963 |
MS.gene072726.t1 | AT1G49430 | 53.655 | 643 | 270 | 4 | 7 | 621 | 8 | 650 | 0.0 | 717 |
MS.gene072726.t1 | AT2G47240 | 47.516 | 644 | 312 | 2 | 4 | 621 | 2 | 645 | 0.0 | 627 |
MS.gene072726.t1 | AT2G47240 | 47.516 | 644 | 312 | 2 | 4 | 621 | 2 | 645 | 0.0 | 627 |
MS.gene072726.t1 | AT2G47240 | 47.516 | 644 | 312 | 2 | 4 | 621 | 2 | 645 | 0.0 | 627 |
MS.gene072726.t1 | AT2G47240 | 48.123 | 586 | 278 | 2 | 62 | 621 | 1 | 586 | 0.0 | 575 |
MS.gene072726.t1 | AT1G49430 | 50.909 | 495 | 231 | 2 | 7 | 489 | 8 | 502 | 0.0 | 535 |
MS.gene072726.t1 | AT5G27600 | 39.052 | 612 | 334 | 9 | 38 | 620 | 78 | 679 | 1.95e-138 | 420 |
MS.gene072726.t1 | AT3G05970 | 39.804 | 613 | 328 | 10 | 38 | 620 | 78 | 679 | 1.60e-133 | 407 |
MS.gene072726.t1 | AT2G04350 | 31.818 | 638 | 369 | 13 | 39 | 616 | 76 | 707 | 3.57e-96 | 310 |
MS.gene072726.t1 | AT2G04350 | 31.818 | 638 | 369 | 13 | 39 | 616 | 76 | 707 | 3.57e-96 | 310 |
MS.gene072726.t1 | AT1G77590 | 31.487 | 632 | 363 | 14 | 48 | 620 | 62 | 682 | 1.52e-90 | 295 |
MS.gene072726.t1 | AT1G77590 | 33.150 | 546 | 309 | 12 | 121 | 621 | 3 | 537 | 1.09e-81 | 267 |
MS.gene072726.t1 | AT3G23790 | 26.493 | 653 | 378 | 26 | 48 | 621 | 85 | 714 | 1.15e-39 | 155 |
MS.gene072726.t1 | AT4G14070 | 25.311 | 644 | 386 | 22 | 48 | 621 | 101 | 719 | 3.11e-35 | 142 |
MS.gene072726.t1 | AT2G47245 | 50.000 | 76 | 38 | 0 | 22 | 97 | 53 | 128 | 8.39e-21 | 89.0 |
MS.gene072726.t1 | AT3G21230 | 28.280 | 343 | 204 | 12 | 201 | 538 | 190 | 495 | 1.92e-20 | 95.9 |
MS.gene072726.t1 | AT3G21230 | 28.280 | 343 | 204 | 12 | 201 | 538 | 190 | 495 | 2.56e-20 | 95.5 |
MS.gene072726.t1 | AT3G21230 | 28.280 | 343 | 204 | 12 | 201 | 538 | 190 | 495 | 2.67e-20 | 95.1 |
MS.gene072726.t1 | AT4G19010 | 27.950 | 322 | 187 | 11 | 217 | 531 | 199 | 482 | 3.27e-20 | 95.1 |
MS.gene072726.t1 | AT3G16170 | 23.654 | 520 | 300 | 16 | 99 | 587 | 124 | 577 | 4.17e-20 | 95.1 |
MS.gene072726.t1 | AT1G66120 | 23.848 | 499 | 295 | 16 | 80 | 553 | 41 | 479 | 3.14e-18 | 89.0 |
MS.gene072726.t1 | AT1G65060 | 25.577 | 477 | 257 | 19 | 77 | 526 | 74 | 479 | 4.77e-18 | 88.2 |
MS.gene072726.t1 | AT1G65890 | 24.172 | 513 | 291 | 17 | 73 | 554 | 35 | 480 | 6.68e-18 | 87.8 |
MS.gene072726.t1 | AT1G65060 | 25.486 | 463 | 248 | 18 | 77 | 512 | 74 | 466 | 9.42e-18 | 87.0 |
MS.gene072726.t1 | AT3G16910 | 22.928 | 567 | 328 | 24 | 73 | 597 | 43 | 542 | 1.53e-17 | 86.7 |
MS.gene072726.t1 | AT1G20500 | 27.950 | 322 | 178 | 14 | 221 | 533 | 196 | 472 | 3.26e-17 | 85.5 |
MS.gene072726.t1 | AT3G21240 | 26.705 | 352 | 203 | 16 | 202 | 540 | 174 | 483 | 7.10e-17 | 84.3 |
MS.gene072726.t1 | AT3G21240 | 26.705 | 352 | 203 | 16 | 202 | 540 | 174 | 483 | 7.10e-17 | 84.3 |
MS.gene072726.t1 | AT3G21240 | 26.705 | 352 | 203 | 16 | 202 | 540 | 174 | 483 | 9.44e-17 | 84.3 |
MS.gene072726.t1 | AT4G05160 | 27.326 | 344 | 198 | 14 | 199 | 533 | 166 | 466 | 6.83e-16 | 81.6 |
MS.gene072726.t1 | AT5G63380 | 28.205 | 351 | 198 | 15 | 195 | 533 | 172 | 480 | 7.61e-16 | 81.3 |
MS.gene072726.t1 | AT1G51680 | 27.353 | 340 | 183 | 14 | 223 | 545 | 203 | 495 | 1.40e-14 | 77.4 |
MS.gene072726.t1 | AT1G51680 | 27.353 | 340 | 183 | 14 | 223 | 545 | 203 | 495 | 1.63e-14 | 77.0 |
MS.gene072726.t1 | AT1G51680 | 27.164 | 335 | 180 | 14 | 223 | 540 | 203 | 490 | 3.97e-14 | 75.9 |
MS.gene072726.t1 | AT1G20510 | 26.923 | 338 | 182 | 16 | 218 | 538 | 182 | 471 | 6.45e-13 | 72.0 |
MS.gene072726.t1 | AT1G20510 | 26.331 | 338 | 184 | 16 | 218 | 538 | 182 | 471 | 7.31e-13 | 71.6 |
MS.gene072726.t1 | AT1G20480 | 24.779 | 339 | 201 | 14 | 210 | 538 | 198 | 492 | 2.49e-12 | 70.1 |
MS.gene072726.t1 | AT1G20510 | 26.367 | 311 | 165 | 15 | 218 | 511 | 182 | 445 | 6.31e-12 | 68.6 |
MS.gene072726.t1 | AT1G62940 | 24.784 | 347 | 214 | 12 | 201 | 538 | 159 | 467 | 1.57e-11 | 67.8 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
38119 | gene | 31 | 10088 | 31 | ID=MS.gene072726 |
38119 | mRNA | 31 | 10088 | 31 | ID=MS.gene072726.t1;Parent=MS.gene072726 |
38119 | exon | 31 | 182 | 31 | ID=MS.gene072726.t1.exon1;Parent=MS.gene072726.t1 |
38119 | CDS | 31 | 182 | 31 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 859 | 922 | 859 | ID=MS.gene072726.t1.exon2;Parent=MS.gene072726.t1 |
38119 | CDS | 859 | 922 | 859 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 1041 | 1130 | 1041 | ID=MS.gene072726.t1.exon3;Parent=MS.gene072726.t1 |
38119 | CDS | 1041 | 1130 | 1041 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 3233 | 3289 | 3233 | ID=MS.gene072726.t1.exon4;Parent=MS.gene072726.t1 |
38119 | CDS | 3233 | 3289 | 3233 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 4422 | 4470 | 4422 | ID=MS.gene072726.t1.exon5;Parent=MS.gene072726.t1 |
38119 | CDS | 4422 | 4470 | 4422 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 5550 | 5626 | 5550 | ID=MS.gene072726.t1.exon6;Parent=MS.gene072726.t1 |
38119 | CDS | 5550 | 5626 | 5550 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 5744 | 5783 | 5744 | ID=MS.gene072726.t1.exon7;Parent=MS.gene072726.t1 |
38119 | CDS | 5744 | 5783 | 5744 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 5862 | 5956 | 5862 | ID=MS.gene072726.t1.exon8;Parent=MS.gene072726.t1 |
38119 | CDS | 5862 | 5956 | 5862 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 6403 | 6570 | 6403 | ID=MS.gene072726.t1.exon9;Parent=MS.gene072726.t1 |
38119 | CDS | 6403 | 6570 | 6403 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 6801 | 6911 | 6801 | ID=MS.gene072726.t1.exon10;Parent=MS.gene072726.t1 |
38119 | CDS | 6801 | 6911 | 6801 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 7086 | 7140 | 7086 | ID=MS.gene072726.t1.exon11;Parent=MS.gene072726.t1 |
38119 | CDS | 7086 | 7140 | 7086 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 7304 | 7370 | 7304 | ID=MS.gene072726.t1.exon12;Parent=MS.gene072726.t1 |
38119 | CDS | 7304 | 7370 | 7304 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 7562 | 7637 | 7562 | ID=MS.gene072726.t1.exon13;Parent=MS.gene072726.t1 |
38119 | CDS | 7562 | 7637 | 7562 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 7733 | 7850 | 7733 | ID=MS.gene072726.t1.exon14;Parent=MS.gene072726.t1 |
38119 | CDS | 7733 | 7850 | 7733 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 8188 | 8433 | 8188 | ID=MS.gene072726.t1.exon15;Parent=MS.gene072726.t1 |
38119 | CDS | 8188 | 8433 | 8188 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 8540 | 8679 | 8540 | ID=MS.gene072726.t1.exon16;Parent=MS.gene072726.t1 |
38119 | CDS | 8540 | 8679 | 8540 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 9342 | 9479 | 9342 | ID=MS.gene072726.t1.exon17;Parent=MS.gene072726.t1 |
38119 | CDS | 9342 | 9479 | 9342 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
38119 | exon | 9969 | 10088 | 9969 | ID=MS.gene072726.t1.exon18;Parent=MS.gene072726.t1 |
38119 | CDS | 9969 | 10088 | 9969 | ID=cds.MS.gene072726.t1;Parent=MS.gene072726.t1 |
Gene Sequence |
Protein sequence |