Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99632.t1 | RHN82051.1 | 99.3 | 697 | 5 | 0 | 1 | 697 | 1 | 697 | 0.00E+00 | 1421 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99632.t1 | Q8LPS1 | 79.2 | 683 | 140 | 1 | 11 | 693 | 16 | 696 | 0.0e+00 | 1147.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99632.t1 | A0A396JZE4 | 99.3 | 697 | 5 | 0 | 1 | 697 | 1 | 697 | 0.0e+00 | 1421.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene99632 | MS.gene026390 | PPI |
MS.gene99632 | MS.gene21662 | PPI |
MS.gene99632 | MS.gene061688 | PPI |
MS.gene99632 | MS.gene71307 | PPI |
MS.gene99632 | MS.gene072680 | PPI |
MS.gene99632 | MS.gene90444 | PPI |
MS.gene99632 | MS.gene048924 | PPI |
MS.gene061071 | MS.gene99632 | PPI |
MS.gene70469 | MS.gene99632 | PPI |
MS.gene99632 | MS.gene55795 | PPI |
MS.gene99632 | MS.gene28831 | PPI |
MS.gene99632 | MS.gene40645 | PPI |
MS.gene99632 | MS.gene21663 | PPI |
MS.gene99632 | MS.gene045073 | PPI |
MS.gene99632 | MS.gene005494 | PPI |
MS.gene99632 | MS.gene07080 | PPI |
MS.gene99632 | MS.gene072726 | PPI |
MS.gene99632 | MS.gene003833 | PPI |
MS.gene99632 | MS.gene33594 | PPI |
MS.gene99632 | MS.gene026629 | PPI |
MS.gene99632 | MS.gene63009 | PPI |
MS.gene99632 | MS.gene22308 | PPI |
MS.gene99632 | MS.gene044334 | PPI |
MS.gene99632 | MS.gene056629 | PPI |
MS.gene99632 | MS.gene07328 | PPI |
MS.gene99632 | MS.gene22309 | PPI |
MS.gene99632 | MS.gene25695 | PPI |
MS.gene99632 | MS.gene050419 | PPI |
MS.gene99632 | MS.gene20877 | PPI |
MS.gene99632 | MS.gene040821 | PPI |
MS.gene99632 | MS.gene06068 | PPI |
MS.gene99632 | MS.gene75435 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99632.t1 | MTR_1g104810 | 99.139 | 697 | 6 | 0 | 1 | 697 | 1 | 697 | 0.0 | 1440 |
MS.gene99632.t1 | MTR_1g104810 | 98.701 | 616 | 7 | 1 | 83 | 697 | 15 | 630 | 0.0 | 1258 |
MS.gene99632.t1 | MTR_4g068670 | 42.673 | 621 | 334 | 9 | 83 | 686 | 38 | 653 | 9.86e-168 | 496 |
MS.gene99632.t1 | MTR_5g009350 | 40.895 | 626 | 355 | 8 | 75 | 689 | 38 | 659 | 6.69e-159 | 474 |
MS.gene99632.t1 | MTR_5g009350 | 40.946 | 613 | 347 | 8 | 75 | 676 | 38 | 646 | 4.17e-156 | 466 |
MS.gene99632.t1 | MTR_1g034360 | 40.282 | 638 | 362 | 11 | 60 | 686 | 26 | 655 | 6.44e-156 | 466 |
MS.gene99632.t1 | MTR_8g099420 | 40.813 | 615 | 349 | 8 | 82 | 685 | 46 | 656 | 1.47e-155 | 465 |
MS.gene99632.t1 | MTR_5g009360 | 40.909 | 616 | 349 | 8 | 85 | 689 | 48 | 659 | 3.82e-154 | 462 |
MS.gene99632.t1 | MTR_7g109830 | 38.880 | 643 | 378 | 8 | 54 | 685 | 15 | 653 | 3.02e-140 | 426 |
MS.gene99632.t1 | MTR_1g086600 | 37.963 | 648 | 378 | 12 | 60 | 692 | 46 | 684 | 4.06e-134 | 411 |
MS.gene99632.t1 | MTR_5g009360 | 41.011 | 534 | 300 | 8 | 167 | 689 | 4 | 533 | 1.09e-132 | 402 |
MS.gene99632.t1 | MTR_5g009350 | 39.326 | 534 | 310 | 7 | 75 | 597 | 38 | 568 | 2.80e-125 | 384 |
MS.gene99632.t1 | MTR_5g009350 | 40.873 | 504 | 284 | 7 | 75 | 567 | 38 | 538 | 6.73e-124 | 380 |
MS.gene99632.t1 | MTR_3g087980 | 34.830 | 646 | 377 | 11 | 79 | 686 | 55 | 694 | 3.08e-121 | 377 |
MS.gene99632.t1 | MTR_1g030290 | 33.642 | 648 | 379 | 11 | 80 | 685 | 57 | 695 | 5.04e-117 | 367 |
MS.gene99632.t1 | MTR_3g082660 | 34.992 | 603 | 359 | 11 | 110 | 685 | 131 | 727 | 8.09e-112 | 354 |
MS.gene99632.t1 | MTR_3g084450 | 26.772 | 635 | 377 | 18 | 116 | 684 | 107 | 719 | 3.19e-54 | 198 |
MS.gene99632.t1 | MTR_3g084470 | 26.856 | 633 | 376 | 18 | 116 | 684 | 105 | 714 | 2.42e-52 | 193 |
MS.gene99632.t1 | MTR_3g084450 | 28.866 | 485 | 273 | 14 | 252 | 684 | 47 | 511 | 9.37e-51 | 185 |
MS.gene99632.t1 | MTR_8g083170 | 26.073 | 629 | 391 | 17 | 116 | 684 | 109 | 723 | 1.46e-48 | 182 |
MS.gene99632.t1 | MTR_2g095510 | 29.245 | 424 | 219 | 16 | 174 | 568 | 85 | 456 | 3.43e-30 | 125 |
MS.gene99632.t1 | MTR_4g013210 | 29.412 | 340 | 180 | 7 | 258 | 580 | 69 | 365 | 1.35e-29 | 122 |
MS.gene99632.t1 | MTR_4g013210 | 29.412 | 340 | 180 | 7 | 258 | 580 | 221 | 517 | 4.13e-29 | 123 |
MS.gene99632.t1 | MTR_4g057730 | 29.394 | 330 | 160 | 13 | 256 | 568 | 186 | 459 | 4.99e-29 | 121 |
MS.gene99632.t1 | MTR_2g095510 | 29.238 | 407 | 208 | 15 | 174 | 551 | 85 | 440 | 7.23e-29 | 120 |
MS.gene99632.t1 | MTR_4g011790 | 27.536 | 345 | 189 | 6 | 258 | 580 | 226 | 531 | 7.86e-29 | 122 |
MS.gene99632.t1 | MTR_4g057730 | 29.607 | 331 | 158 | 13 | 256 | 568 | 186 | 459 | 1.12e-28 | 121 |
MS.gene99632.t1 | MTR_1g063110 | 26.793 | 474 | 262 | 20 | 116 | 568 | 56 | 465 | 2.35e-28 | 120 |
MS.gene99632.t1 | MTR_4g011790 | 26.822 | 343 | 185 | 6 | 258 | 580 | 226 | 522 | 3.66e-27 | 117 |
MS.gene99632.t1 | MTR_4g057730 | 29.618 | 314 | 147 | 12 | 256 | 551 | 186 | 443 | 4.76e-27 | 115 |
MS.gene99632.t1 | MTR_4g011790 | 27.114 | 343 | 184 | 6 | 258 | 580 | 226 | 522 | 6.20e-27 | 116 |
MS.gene99632.t1 | MTR_5g007640 | 26.383 | 470 | 271 | 14 | 114 | 568 | 95 | 504 | 2.56e-26 | 114 |
MS.gene99632.t1 | MTR_1g063120 | 27.778 | 342 | 190 | 12 | 238 | 568 | 174 | 469 | 3.13e-26 | 114 |
MS.gene99632.t1 | MTR_2g105570 | 25.558 | 493 | 281 | 19 | 94 | 564 | 33 | 461 | 4.61e-26 | 113 |
MS.gene99632.t1 | MTR_4g005750 | 30.218 | 321 | 170 | 11 | 256 | 566 | 180 | 456 | 3.60e-25 | 110 |
MS.gene99632.t1 | MTR_4g077900 | 28.125 | 384 | 210 | 12 | 202 | 568 | 61 | 395 | 2.36e-24 | 107 |
MS.gene99632.t1 | MTR_3g088870 | 27.298 | 359 | 199 | 12 | 223 | 566 | 162 | 473 | 7.03e-24 | 106 |
MS.gene99632.t1 | MTR_4g013210 | 28.173 | 323 | 165 | 7 | 258 | 580 | 69 | 324 | 1.42e-23 | 104 |
MS.gene99632.t1 | MTR_5g027480 | 24.769 | 541 | 311 | 17 | 57 | 580 | 23 | 484 | 1.60e-23 | 105 |
MS.gene99632.t1 | MTR_4g013210 | 28.173 | 323 | 165 | 7 | 258 | 580 | 221 | 476 | 2.24e-23 | 105 |
MS.gene99632.t1 | MTR_3g088880 | 27.532 | 316 | 175 | 9 | 259 | 566 | 202 | 471 | 5.44e-23 | 103 |
MS.gene99632.t1 | MTR_4g128337 | 24.580 | 476 | 285 | 16 | 106 | 568 | 51 | 465 | 2.85e-22 | 101 |
MS.gene99632.t1 | MTR_5g027500 | 30.556 | 324 | 168 | 12 | 256 | 568 | 208 | 485 | 6.03e-22 | 100 |
MS.gene99632.t1 | MTR_4g013210 | 28.025 | 314 | 159 | 7 | 258 | 571 | 221 | 467 | 2.02e-21 | 99.0 |
MS.gene99632.t1 | MTR_3g035130 | 25.904 | 332 | 191 | 10 | 256 | 580 | 161 | 444 | 3.66e-21 | 97.8 |
MS.gene99632.t1 | MTR_3g035130 | 25.904 | 332 | 191 | 10 | 256 | 580 | 161 | 444 | 4.82e-21 | 97.8 |
MS.gene99632.t1 | MTR_1g026310 | 27.215 | 316 | 173 | 9 | 259 | 564 | 205 | 473 | 1.85e-20 | 96.3 |
MS.gene99632.t1 | MTR_5g076220 | 24.777 | 448 | 273 | 12 | 136 | 566 | 60 | 460 | 4.33e-20 | 95.1 |
MS.gene99632.t1 | MTR_3g460770 | 33.889 | 180 | 99 | 8 | 396 | 568 | 292 | 458 | 4.71e-19 | 91.7 |
MS.gene99632.t1 | MTR_1569s0010 | 25.564 | 399 | 225 | 18 | 232 | 610 | 157 | 503 | 5.79e-19 | 91.3 |
MS.gene99632.t1 | MTR_5g076200 | 24.330 | 448 | 275 | 12 | 136 | 566 | 60 | 460 | 2.44e-18 | 89.4 |
MS.gene99632.t1 | MTR_0161s0050 | 27.100 | 369 | 213 | 12 | 209 | 566 | 139 | 462 | 1.73e-17 | 87.0 |
MS.gene99632.t1 | MTR_1g073180 | 28.173 | 323 | 174 | 16 | 253 | 566 | 198 | 471 | 1.28e-15 | 80.9 |
MS.gene99632.t1 | MTR_1g073180 | 28.173 | 323 | 174 | 16 | 253 | 566 | 176 | 449 | 1.67e-15 | 80.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99632.t1 | AT3G05970 | 79.209 | 683 | 140 | 1 | 11 | 693 | 16 | 696 | 0.0 | 1101 |
MS.gene99632.t1 | AT5G27600 | 73.381 | 695 | 182 | 1 | 1 | 692 | 1 | 695 | 0.0 | 1095 |
MS.gene99632.t1 | AT1G49430 | 41.167 | 617 | 346 | 7 | 87 | 690 | 51 | 663 | 8.25e-158 | 471 |
MS.gene99632.t1 | AT1G64400 | 40.217 | 644 | 355 | 10 | 60 | 686 | 27 | 657 | 1.76e-156 | 468 |
MS.gene99632.t1 | AT4G23850 | 39.158 | 641 | 370 | 10 | 60 | 688 | 27 | 659 | 3.86e-156 | 467 |
MS.gene99632.t1 | AT4G11030 | 38.725 | 643 | 374 | 10 | 60 | 690 | 27 | 661 | 4.46e-150 | 451 |
MS.gene99632.t1 | AT2G47240 | 39.620 | 631 | 354 | 8 | 75 | 688 | 36 | 656 | 8.40e-145 | 437 |
MS.gene99632.t1 | AT2G47240 | 39.620 | 631 | 354 | 8 | 75 | 688 | 36 | 656 | 8.40e-145 | 437 |
MS.gene99632.t1 | AT2G47240 | 39.620 | 631 | 354 | 8 | 75 | 688 | 36 | 656 | 8.40e-145 | 437 |
MS.gene99632.t1 | AT2G47240 | 39.934 | 606 | 337 | 8 | 100 | 688 | 2 | 597 | 3.47e-141 | 426 |
MS.gene99632.t1 | AT1G77590 | 34.161 | 644 | 377 | 13 | 80 | 685 | 57 | 691 | 7.14e-117 | 366 |
MS.gene99632.t1 | AT2G04350 | 32.653 | 686 | 412 | 13 | 41 | 685 | 44 | 720 | 2.43e-115 | 363 |
MS.gene99632.t1 | AT2G04350 | 32.653 | 686 | 412 | 13 | 41 | 685 | 44 | 720 | 2.43e-115 | 363 |
MS.gene99632.t1 | AT1G77590 | 35.507 | 552 | 323 | 11 | 158 | 685 | 3 | 545 | 1.81e-106 | 335 |
MS.gene99632.t1 | AT1G49430 | 39.912 | 456 | 257 | 7 | 87 | 529 | 51 | 502 | 5.30e-102 | 322 |
MS.gene99632.t1 | AT3G23790 | 27.243 | 613 | 370 | 19 | 131 | 684 | 126 | 721 | 9.12e-49 | 183 |
MS.gene99632.t1 | AT4G14070 | 25.472 | 636 | 373 | 19 | 116 | 685 | 127 | 727 | 6.60e-48 | 181 |
MS.gene99632.t1 | AT4G05160 | 27.444 | 532 | 300 | 22 | 51 | 568 | 2 | 461 | 1.36e-33 | 136 |
MS.gene99632.t1 | AT3G21230 | 27.122 | 483 | 277 | 18 | 102 | 568 | 62 | 485 | 1.44e-30 | 126 |
MS.gene99632.t1 | AT3G21230 | 27.140 | 479 | 274 | 18 | 106 | 568 | 66 | 485 | 1.54e-30 | 127 |
MS.gene99632.t1 | AT3G21230 | 27.140 | 479 | 274 | 18 | 106 | 568 | 66 | 485 | 2.22e-30 | 127 |
MS.gene99632.t1 | AT3G21240 | 24.132 | 576 | 332 | 21 | 72 | 615 | 25 | 527 | 1.74e-27 | 117 |
MS.gene99632.t1 | AT3G21240 | 25.000 | 520 | 294 | 19 | 72 | 568 | 25 | 471 | 2.24e-27 | 117 |
MS.gene99632.t1 | AT3G21240 | 25.000 | 520 | 294 | 19 | 72 | 568 | 25 | 471 | 2.24e-27 | 117 |
MS.gene99632.t1 | AT1G65060 | 26.020 | 588 | 311 | 22 | 18 | 578 | 1 | 491 | 6.00e-27 | 116 |
MS.gene99632.t1 | AT3G16170 | 26.247 | 381 | 226 | 6 | 258 | 624 | 234 | 573 | 5.71e-26 | 113 |
MS.gene99632.t1 | AT4G19010 | 30.909 | 330 | 165 | 11 | 255 | 568 | 197 | 479 | 1.39e-25 | 112 |
MS.gene99632.t1 | AT1G65060 | 25.445 | 562 | 296 | 19 | 18 | 552 | 1 | 466 | 3.13e-25 | 110 |
MS.gene99632.t1 | AT1G51680 | 28.649 | 370 | 197 | 11 | 215 | 568 | 160 | 478 | 1.70e-23 | 105 |
MS.gene99632.t1 | AT1G51680 | 28.649 | 370 | 197 | 11 | 215 | 568 | 160 | 478 | 2.23e-23 | 105 |
MS.gene99632.t1 | AT1G51680 | 28.649 | 370 | 197 | 11 | 215 | 568 | 160 | 478 | 2.74e-23 | 105 |
MS.gene99632.t1 | AT3G48990 | 23.516 | 455 | 275 | 12 | 136 | 580 | 52 | 443 | 5.07e-21 | 97.8 |
MS.gene99632.t1 | AT1G20480 | 28.435 | 313 | 171 | 13 | 258 | 564 | 213 | 478 | 5.69e-21 | 97.8 |
MS.gene99632.t1 | AT1G62940 | 28.173 | 323 | 172 | 12 | 259 | 568 | 182 | 457 | 3.99e-20 | 95.1 |
MS.gene99632.t1 | AT1G20510 | 28.076 | 317 | 178 | 11 | 258 | 568 | 189 | 461 | 1.21e-19 | 93.2 |
MS.gene99632.t1 | AT1G20510 | 27.987 | 318 | 177 | 11 | 258 | 568 | 189 | 461 | 1.65e-19 | 93.2 |
MS.gene99632.t1 | AT5G63380 | 26.744 | 344 | 196 | 13 | 231 | 566 | 178 | 473 | 4.31e-19 | 92.0 |
MS.gene99632.t1 | AT1G20500 | 26.266 | 316 | 183 | 10 | 258 | 568 | 197 | 467 | 4.59e-19 | 91.7 |
MS.gene99632.t1 | AT1G20510 | 28.333 | 300 | 166 | 10 | 258 | 551 | 189 | 445 | 2.67e-18 | 89.0 |
MS.gene99632.t1 | AT5G38120 | 27.564 | 312 | 174 | 11 | 258 | 564 | 199 | 463 | 7.89e-17 | 84.3 |
MS.gene99632.t1 | AT5G38120 | 27.564 | 312 | 174 | 11 | 258 | 564 | 199 | 463 | 7.89e-17 | 84.3 |
MS.gene99632.t1 | AT5G38120 | 27.215 | 316 | 178 | 11 | 258 | 568 | 199 | 467 | 8.04e-17 | 84.7 |
MS.gene99632.t1 | AT5G38120 | 27.215 | 316 | 178 | 11 | 258 | 568 | 199 | 467 | 8.07e-17 | 84.7 |
MS.gene99632.t1 | AT1G21540 | 23.256 | 473 | 287 | 13 | 117 | 566 | 42 | 461 | 1.35e-16 | 84.0 |
MS.gene99632.t1 | AT3G21230 | 25.532 | 423 | 241 | 17 | 102 | 508 | 62 | 426 | 1.74e-16 | 83.2 |
Find 169 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCAACATCCTCAGGCTTT+GGG | 0.168574 | 1.4:+80675698 | None:intergenic |
GGTTCTGGTTTGATTCATTA+TGG | 0.211853 | 1.4:-80678232 | MS.gene99632:CDS |
TTTCCTGTCTGCAGTTTCTC+TGG | 0.218038 | 1.4:+80678824 | None:intergenic |
CTAGGTCATCCATTAGTTTC+AGG | 0.218475 | 1.4:+80674781 | None:intergenic |
CGTATACTACCACTATGTTT+TGG | 0.251948 | 1.4:+80671636 | None:intergenic |
GAAGAAGAATATCTTTAAAT+TGG | 0.266892 | 1.4:-80671920 | MS.gene99632:CDS |
AAGAGCAAAGGCAGCTGTTT+TGG | 0.269619 | 1.4:-80671298 | MS.gene99632:CDS |
TTTGATGCCCTGTAGCTTAG+AGG | 0.270362 | 1.4:-80671165 | MS.gene99632:intron |
GAACCATTTGCGATGGAAAA+TGG | 0.284061 | 1.4:-80671108 | MS.gene99632:CDS |
GTGGCACAGTGCTTTATATA+TGG | 0.285745 | 1.4:-80671838 | MS.gene99632:intron |
CAAGTCATGACAGTATATTT+TGG | 0.315112 | 1.4:-80675339 | MS.gene99632:CDS |
CCTTTCTAGGGTGCTGGCAT+TGG | 0.318151 | 1.4:-80678105 | MS.gene99632:intron |
TACTCACCACAGGCTGGATT+TGG | 0.322408 | 1.4:+80673050 | None:intergenic |
TGGTTGCATACCGGAGATAT+TGG | 0.326125 | 1.4:-80672357 | MS.gene99632:CDS |
TTTCGGGATTACAAATATTT+GGG | 0.326746 | 1.4:-80678463 | MS.gene99632:CDS |
AACTTCATTGCAAATGTTGC+CGG | 0.329433 | 1.4:-80675539 | MS.gene99632:CDS |
TGCTATACAAGTGGCACAAC+TGG | 0.331012 | 1.4:-80675670 | MS.gene99632:CDS |
TTTGTTTGTATTCAGGTAGT+TGG | 0.332815 | 1.4:-80676102 | MS.gene99632:intron |
GTTGCAACATCCTCAGGCTT+TGG | 0.356273 | 1.4:+80675697 | None:intergenic |
TCCATGACATCAGGCGATAA+AGG | 0.357464 | 1.4:+80673299 | None:intergenic |
CATCTATTTCCTAGTTGCTT+TGG | 0.358075 | 1.4:-80673167 | MS.gene99632:intron |
ATTAATGCTGTTAAAACATC+TGG | 0.359287 | 1.4:-80674597 | MS.gene99632:CDS |
TGGAGGACGAGTTCGTCTTA+TGG | 0.362131 | 1.4:-80673336 | MS.gene99632:CDS |
AAAACAGCTGCCTTTGCTCT+TGG | 0.371706 | 1.4:+80671300 | None:intergenic |
CTTTCTAGGGTGCTGGCATT+GGG | 0.374768 | 1.4:-80678104 | MS.gene99632:intron |
CATTGCAGTGGGATTCTACC+AGG | 0.378233 | 1.4:-80675316 | MS.gene99632:CDS |
GCTCGGTCGGCAATAGGTTC+TGG | 0.383266 | 1.4:-80678247 | MS.gene99632:CDS |
TTCCTGTCTGCAGTTTCTCT+GGG | 0.388879 | 1.4:+80678825 | None:intergenic |
TCATGCAGTGTACCAACTTC+AGG | 0.390509 | 1.4:+80678655 | None:intergenic |
CGAGTTCGTCTTATGGTATC+AGG | 0.390691 | 1.4:-80673329 | MS.gene99632:CDS |
ACAATATATTTGACAGCATC+AGG | 0.392883 | 1.4:+80677892 | None:intergenic |
CCCGCGGTGAAATTTGTGTC+AGG | 0.396001 | 1.4:-80672538 | MS.gene99632:CDS |
CGGCATATATTCTATTATAT+AGG | 0.413923 | 1.4:+80674721 | None:intergenic |
ACAGGATAACCTGAAACTAA+TGG | 0.417448 | 1.4:-80674790 | MS.gene99632:intron |
ATACCAAGAGTGTCATATAA+AGG | 0.418469 | 1.4:+80678009 | None:intergenic |
TCAATGCTTGCCTTCATTGT+CGG | 0.421507 | 1.4:+80671075 | None:intergenic |
GTACCAACTTCAGGATGATC+AGG | 0.427528 | 1.4:+80678664 | None:intergenic |
GATAAAACTTGTAGACGTTC+CGG | 0.427660 | 1.4:-80672594 | MS.gene99632:CDS |
GTTATAAGCTGCATTGATAA+TGG | 0.429114 | 1.4:-80673101 | MS.gene99632:CDS |
GGTACTGCTCGGTCGGCAAT+AGG | 0.429379 | 1.4:-80678253 | MS.gene99632:CDS |
TATGTGCCTTTCTAGGGTGC+TGG | 0.431926 | 1.4:-80678111 | MS.gene99632:intron |
CTCCTCTGAAGCTGATGAAC+CGG | 0.434081 | 1.4:-80678690 | MS.gene99632:CDS |
TGCAACATCCTCAGGCTTTG+GGG | 0.435671 | 1.4:+80675699 | None:intergenic |
TTATATATCCTATCTCCCTT+TGG | 0.438366 | 1.4:-80675385 | MS.gene99632:CDS |
CTGCACTCCTAAGGTACAAA+TGG | 0.438551 | 1.4:-80678294 | MS.gene99632:intron |
TTCTTTGGTATCTGTTGTCT+CGG | 0.439397 | 1.4:-80671693 | MS.gene99632:CDS |
CAGGAAAGTGGAACGTGTAT+AGG | 0.440888 | 1.4:-80678808 | MS.gene99632:intron |
ACCTTTATCGCCTGATGTCA+TGG | 0.447455 | 1.4:-80673300 | MS.gene99632:CDS |
GGTTGCATACCGGAGATATT+GGG | 0.448177 | 1.4:-80672356 | MS.gene99632:CDS |
GCAACATCCTCAGGCTTTGG+GGG | 0.451780 | 1.4:+80675700 | None:intergenic |
GTTTGTATTCAGGTAGTTGG+AGG | 0.457770 | 1.4:-80676099 | MS.gene99632:intron |
CTATTTCCTAGTTGCTTTGG+TGG | 0.461262 | 1.4:-80673164 | MS.gene99632:intron |
GGGAGAGTGACTGAAGGTTA+TGG | 0.463969 | 1.4:-80673143 | MS.gene99632:CDS |
GCCCATGCTTTCATGACATC+AGG | 0.465273 | 1.4:+80671665 | None:intergenic |
ACTTCATTGCAAATGTTGCC+GGG | 0.467289 | 1.4:-80675538 | MS.gene99632:CDS |
ACGACGTTGCGCGGTAGGTG+TGG | 0.472235 | 1.4:+80680294 | None:intergenic |
CAAATGGTTGCAACATCCTC+AGG | 0.476858 | 1.4:+80675691 | None:intergenic |
TTCACAGGGGTTTCTGAGAA+GGG | 0.483679 | 1.4:+80670904 | None:intergenic |
AGGTACAAATGGATGACATA+TGG | 0.487976 | 1.4:-80678283 | MS.gene99632:CDS |
CATCGGCGGCGGTGATGAGG+TGG | 0.489631 | 1.4:+80680254 | None:intergenic |
GGAACCCGTGTTCGTGTCGA+TGG | 0.489980 | 1.4:-80678442 | MS.gene99632:CDS |
TATTTCCTAGTTGCTTTGGT+GGG | 0.490069 | 1.4:-80673163 | MS.gene99632:intron |
CAGGGGTTTCTGAGAAGGGT+CGG | 0.492434 | 1.4:+80670908 | None:intergenic |
CCGAAGTATTCTTTCGCTTG+AGG | 0.493077 | 1.4:+80670969 | None:intergenic |
CTTCAGGATGATCAGGGAAC+CGG | 0.495883 | 1.4:+80678671 | None:intergenic |
TTTCACAGGGGTTTCTGAGA+AGG | 0.499759 | 1.4:+80670903 | None:intergenic |
TTCGTGTCGATGGAACAGTT+GGG | 0.500589 | 1.4:-80678432 | MS.gene99632:CDS |
CGCTCATAAATGTGTGCCAA+AGG | 0.501935 | 1.4:+80675369 | None:intergenic |
GTTCGTGTCGATGGAACAGT+TGG | 0.504069 | 1.4:-80678433 | MS.gene99632:CDS |
TGGATGACATATGGAGAAGC+AGG | 0.510472 | 1.4:-80678274 | MS.gene99632:CDS |
AATCTGTCCCACATTGGAGA+TGG | 0.510952 | 1.4:+80673386 | None:intergenic |
GTGCCTTTATATGACACTCT+TGG | 0.515439 | 1.4:-80678012 | MS.gene99632:intron |
GGGATTTGATTGAAGATGAT+CGG | 0.516391 | 1.4:+80680222 | None:intergenic |
AATGTGTGCCAAAGGGAGAT+AGG | 0.518134 | 1.4:+80675377 | None:intergenic |
TCCAACTGTGCGTCTTATTG+TGG | 0.518595 | 1.4:-80676192 | MS.gene99632:intron |
GGAGAAGAACTCGCCGGCAG+TGG | 0.519073 | 1.4:+80680201 | None:intergenic |
CCGCGGTGAAATTTGTGTCA+GGG | 0.519612 | 1.4:-80672537 | MS.gene99632:CDS |
CCTGACACAAATTTCACCGC+GGG | 0.525392 | 1.4:+80672538 | None:intergenic |
AAAAGAACTTACACATCTGA+AGG | 0.525694 | 1.4:+80675491 | None:intergenic |
ATTTGAACTCCATCTGATGA+TGG | 0.530846 | 1.4:+80676051 | None:intergenic |
GAGAGAAGTCATCGATGAAG+AGG | 0.533536 | 1.4:-80672382 | MS.gene99632:CDS |
TTGAGACGACGTTGCGCGGT+AGG | 0.538782 | 1.4:+80680289 | None:intergenic |
TCATACTACTCACCACAGGC+TGG | 0.541482 | 1.4:+80673044 | None:intergenic |
CGACGTTGCGCGGTAGGTGT+GGG | 0.541956 | 1.4:+80680295 | None:intergenic |
CTATATAATAGAATATATGC+CGG | 0.543592 | 1.4:-80674720 | MS.gene99632:CDS |
TTCCCTGATCATCCTGAAGT+TGG | 0.544033 | 1.4:-80678667 | MS.gene99632:CDS |
ATCTGTCCCACATTGGAGAT+GGG | 0.544892 | 1.4:+80673387 | None:intergenic |
CGCGGTGAAATTTGTGTCAG+GGG | 0.545199 | 1.4:-80672536 | MS.gene99632:CDS |
CTTCAATCAAATCCCACTGC+CGG | 0.552996 | 1.4:-80680214 | MS.gene99632:CDS |
TGCTTACAATGCTAAAAGAC+AGG | 0.553359 | 1.4:-80674547 | MS.gene99632:CDS |
GATATTGGGACATGGATAGC+TGG | 0.555765 | 1.4:-80672342 | MS.gene99632:CDS |
TAAAACATCTGGTGGTCTGA+AGG | 0.556698 | 1.4:-80674586 | MS.gene99632:CDS |
TATATAATAGAATATATGCC+GGG | 0.556797 | 1.4:-80674719 | MS.gene99632:intron |
GTCGTCTCAAAATCATTGAT+AGG | 0.558613 | 1.4:-80672317 | MS.gene99632:intron |
TGATCAACAATGAGCCACTC+AGG | 0.559801 | 1.4:+80678063 | None:intergenic |
GAAGAGGGATGGTTGCATAC+CGG | 0.560372 | 1.4:-80672366 | MS.gene99632:CDS |
AGAAACTGCAGACAGGAAAG+TGG | 0.560599 | 1.4:-80678820 | MS.gene99632:CDS |
AGCTTTGAGACGACGTTGCG+CGG | 0.562549 | 1.4:+80680285 | None:intergenic |
TATCATCGGCGGCGGTGATG+AGG | 0.563995 | 1.4:+80680251 | None:intergenic |
TCAGATGTATAATTCATCTC+CGG | 0.565210 | 1.4:+80672575 | None:intergenic |
TAGGAACCTCCGCACCTTTG+GGG | 0.565710 | 1.4:+80675645 | None:intergenic |
TATCCATGTCCCAATATCTC+CGG | 0.566673 | 1.4:+80672347 | None:intergenic |
TTGGCTGAGATGGACGCTGT+TGG | 0.567107 | 1.4:-80671279 | MS.gene99632:CDS |
ATTGCAGTGGGATTCTACCA+GGG | 0.567345 | 1.4:-80675315 | MS.gene99632:CDS |
ACTGCCGGCGAGTTCTTCTC+CGG | 0.568517 | 1.4:-80680199 | MS.gene99632:intron |
CAGCTTCAGAGGAGAGCGTA+CGG | 0.568997 | 1.4:+80678699 | None:intergenic |
GCAACCATTTGCTATACAAG+TGG | 0.569003 | 1.4:-80675679 | MS.gene99632:CDS |
CATCTGGTGGTCTGAAGGAG+AGG | 0.569239 | 1.4:-80674581 | MS.gene99632:CDS |
AACCGGTTCATCAGCTTCAG+AGG | 0.573744 | 1.4:+80678688 | None:intergenic |
CCATCTGATGATGGAAGTGA+TGG | 0.575040 | 1.4:+80676060 | None:intergenic |
TCTGCTGACTCCGACAATGA+AGG | 0.578027 | 1.4:-80671085 | MS.gene99632:intron |
GAGAAGAACTCGCCGGCAGT+GGG | 0.578110 | 1.4:+80680202 | None:intergenic |
CTCCCAGAGAAACTGCAGAC+AGG | 0.578417 | 1.4:-80678827 | MS.gene99632:CDS |
TTTGGTATCTGTTGTCTCGG+TGG | 0.579547 | 1.4:-80671690 | MS.gene99632:CDS |
TGTGCCACTTGTATAGCAAA+TGG | 0.581619 | 1.4:+80675675 | None:intergenic |
TTGCAGTGGGATTCTACCAG+GGG | 0.585254 | 1.4:-80675314 | MS.gene99632:CDS |
AAAACTAATCTGTCCCACAT+TGG | 0.586150 | 1.4:+80673380 | None:intergenic |
TGTTCCATCGACACGAACAC+GGG | 0.587652 | 1.4:+80678438 | None:intergenic |
AGAGAAGTCATCGATGAAGA+GGG | 0.588897 | 1.4:-80672381 | MS.gene99632:CDS |
CTGTTCCATCGACACGAACA+CGG | 0.589819 | 1.4:+80678437 | None:intergenic |
GCTCATAAATGTGTGCCAAA+GGG | 0.589901 | 1.4:+80675370 | None:intergenic |
CAGTAGGTCTTAGAGCTGCT+AGG | 0.592344 | 1.4:+80674763 | None:intergenic |
ATCCTGATGTCATGAAAGCA+TGG | 0.593220 | 1.4:-80671667 | MS.gene99632:CDS |
ACCACAATAAGACGCACAGT+TGG | 0.593335 | 1.4:+80676191 | None:intergenic |
GGCTCTCCAAATCCAGCCTG+TGG | 0.594459 | 1.4:-80673056 | MS.gene99632:intron |
GGCTGCTTCCCAAAACATAG+TGG | 0.595728 | 1.4:-80671645 | MS.gene99632:intron |
ATGGAGAAGCAGGTACTGCT+CGG | 0.596706 | 1.4:-80678264 | MS.gene99632:CDS |
CCATCACTTCCATCATCAGA+TGG | 0.596742 | 1.4:-80676060 | MS.gene99632:CDS |
CTTCATTGCAAATGTTGCCG+GGG | 0.599877 | 1.4:-80675537 | MS.gene99632:CDS |
AATGCTGTTAAAACATCTGG+TGG | 0.601121 | 1.4:-80674594 | MS.gene99632:CDS |
CAACATCCTCAGGCTTTGGG+GGG | 0.601922 | 1.4:+80675701 | None:intergenic |
ATTGATAATGGTGACAGACT+TGG | 0.602018 | 1.4:-80673089 | MS.gene99632:CDS |
ATATAACTTGCACAAGAGCA+TGG | 0.602317 | 1.4:+80677866 | None:intergenic |
GCTTATAACACAAGTAGTCT+CGG | 0.603798 | 1.4:+80673115 | None:intergenic |
AGAAGCAGGTACTGCTCGGT+CGG | 0.605696 | 1.4:-80678260 | MS.gene99632:CDS |
AAAAGACAGGCATTATTGCA+TGG | 0.608387 | 1.4:-80674534 | MS.gene99632:intron |
TTTACTTCTGAGCAGAGCAA+GGG | 0.608749 | 1.4:-80678862 | MS.gene99632:intron |
GATAATGGTGACAGACTTGG+TGG | 0.612554 | 1.4:-80673086 | MS.gene99632:CDS |
ATCGGCGGCGGTGATGAGGT+GGG | 0.613632 | 1.4:+80680255 | None:intergenic |
GATTCATTATGGAATCCCAA+AGG | 0.616385 | 1.4:-80678221 | MS.gene99632:intron |
TTGCAATGATCCAAGAGCAA+AGG | 0.618197 | 1.4:-80671310 | MS.gene99632:CDS |
TCGTGTCGATGGAACAGTTG+GGG | 0.622671 | 1.4:-80678431 | MS.gene99632:CDS |
TCCTGATGTCATGAAAGCAT+GGG | 0.622923 | 1.4:-80671666 | MS.gene99632:CDS |
CAAGAACCCATCTCCAATGT+GGG | 0.625813 | 1.4:-80673393 | MS.gene99632:CDS |
GGTGGCTGAACCATTTGCGA+TGG | 0.629440 | 1.4:-80671115 | MS.gene99632:CDS |
GAAGACCTCTCAATTTCACA+GGG | 0.631513 | 1.4:+80670890 | None:intergenic |
AAGTCATCGATGAAGAGGGA+TGG | 0.631708 | 1.4:-80672377 | MS.gene99632:CDS |
GGAAGAGTTATCATCGGCGG+CGG | 0.635023 | 1.4:+80680243 | None:intergenic |
GCAAGAACCCATCTCCAATG+TGG | 0.638991 | 1.4:-80673394 | MS.gene99632:CDS |
AAAGAACTTACACATCTGAA+GGG | 0.640705 | 1.4:+80675492 | None:intergenic |
GGAACACTACAGAAGACAGT+AGG | 0.640828 | 1.4:+80674747 | None:intergenic |
TATATTCTATTATATAGGCG+AGG | 0.652935 | 1.4:+80674726 | None:intergenic |
AATATCTTTAAATTGGCACA+AGG | 0.654215 | 1.4:-80671913 | MS.gene99632:CDS |
TACCAACTTCAGGATGATCA+GGG | 0.654481 | 1.4:+80678665 | None:intergenic |
GACAGACTTGGTGGTCACGT+TGG | 0.658125 | 1.4:-80673077 | MS.gene99632:CDS |
CCTCAAGCGAAAGAATACTT+CGG | 0.659320 | 1.4:-80670969 | MS.gene99632:CDS |
ATCGGAAGAGTTATCATCGG+CGG | 0.662321 | 1.4:+80680240 | None:intergenic |
TGGCACAACTGGAACCCCAA+AGG | 0.662832 | 1.4:-80675659 | MS.gene99632:intron |
AGTACCGGAGAAGAACTCGC+CGG | 0.664704 | 1.4:+80680195 | None:intergenic |
GACATCAGGCGATAAAGGTG+AGG | 0.665171 | 1.4:+80673304 | None:intergenic |
CCCTGACACAAATTTCACCG+CGG | 0.666273 | 1.4:+80672537 | None:intergenic |
CTGACACAAATTTCACCGCG+GGG | 0.668149 | 1.4:+80672539 | None:intergenic |
ATGATCGGAAGAGTTATCAT+CGG | 0.671066 | 1.4:+80680237 | None:intergenic |
TGCAGTGGGATTCTACCAGG+GGG | 0.671319 | 1.4:-80675313 | MS.gene99632:intron |
TGACACAAATTTCACCGCGG+GGG | 0.691163 | 1.4:+80672540 | None:intergenic |
ATTGGGACATGGATAGCTGG+CGG | 0.696046 | 1.4:-80672339 | MS.gene99632:CDS |
TTTGGTGGGAGAGTGACTGA+AGG | 0.700203 | 1.4:-80673149 | MS.gene99632:CDS |
ATACCGGAGATATTGGGACA+TGG | 0.726089 | 1.4:-80672350 | MS.gene99632:CDS |
AAGACCTCTCAATTTCACAG+GGG | 0.751252 | 1.4:+80670891 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 80670905 | 80680323 | 80670905 | ID=MS.gene99632 |
chr1.4 | mRNA | 80670905 | 80680323 | 80670905 | ID=MS.gene99632.t1;Parent=MS.gene99632 |
chr1.4 | exon | 80680200 | 80680323 | 80680200 | ID=MS.gene99632.t1.exon1;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80680200 | 80680323 | 80680200 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80678809 | 80678869 | 80678809 | ID=MS.gene99632.t1.exon2;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80678809 | 80678869 | 80678809 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80678646 | 80678723 | 80678646 | ID=MS.gene99632.t1.exon3;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80678646 | 80678723 | 80678646 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80678430 | 80678501 | 80678430 | ID=MS.gene99632.t1.exon4;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80678430 | 80678501 | 80678430 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80678222 | 80678303 | 80678222 | ID=MS.gene99632.t1.exon5;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80678222 | 80678303 | 80678222 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80678013 | 80678118 | 80678013 | ID=MS.gene99632.t1.exon6;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80678013 | 80678118 | 80678013 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80677840 | 80677916 | 80677840 | ID=MS.gene99632.t1.exon7;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80677840 | 80677916 | 80677840 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80676193 | 80676237 | 80676193 | ID=MS.gene99632.t1.exon8;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80676193 | 80676237 | 80676193 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80676023 | 80676109 | 80676023 | ID=MS.gene99632.t1.exon9;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80676023 | 80676109 | 80676023 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80675660 | 80675749 | 80675660 | ID=MS.gene99632.t1.exon10;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80675660 | 80675749 | 80675660 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80675503 | 80675582 | 80675503 | ID=MS.gene99632.t1.exon11;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80675503 | 80675582 | 80675503 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80675314 | 80675407 | 80675314 | ID=MS.gene99632.t1.exon12;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80675314 | 80675407 | 80675314 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80674720 | 80674808 | 80674720 | ID=MS.gene99632.t1.exon13;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80674720 | 80674808 | 80674720 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80674535 | 80674623 | 80674535 | ID=MS.gene99632.t1.exon14;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80674535 | 80674623 | 80674535 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80673287 | 80673416 | 80673287 | ID=MS.gene99632.t1.exon15;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80673287 | 80673416 | 80673287 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80673057 | 80673175 | 80673057 | ID=MS.gene99632.t1.exon16;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80673057 | 80673175 | 80673057 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80672494 | 80672617 | 80672494 | ID=MS.gene99632.t1.exon17;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80672494 | 80672617 | 80672494 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80672318 | 80672404 | 80672318 | ID=MS.gene99632.t1.exon18;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80672318 | 80672404 | 80672318 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80671839 | 80671942 | 80671839 | ID=MS.gene99632.t1.exon19;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80671839 | 80671942 | 80671839 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80671646 | 80671731 | 80671646 | ID=MS.gene99632.t1.exon20;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80671646 | 80671731 | 80671646 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80671266 | 80671352 | 80671266 | ID=MS.gene99632.t1.exon21;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80671266 | 80671352 | 80671266 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80671086 | 80671172 | 80671086 | ID=MS.gene99632.t1.exon22;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80671086 | 80671172 | 80671086 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
chr1.4 | exon | 80670905 | 80671000 | 80670905 | ID=MS.gene99632.t1.exon23;Parent=MS.gene99632.t1 |
chr1.4 | CDS | 80670905 | 80671000 | 80670905 | ID=cds.MS.gene99632.t1;Parent=MS.gene99632.t1 |
Gene Sequence |
Protein sequence |