Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22309.t1 | XP_003610997.1 | 96.4 | 668 | 18 | 1 | 1 | 668 | 1 | 662 | 0.00E+00 | 1315.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22309.t1 | Q9T0A0 | 73.9 | 662 | 167 | 1 | 3 | 664 | 4 | 659 | 2.5e-302 | 1038.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22309.t1 | G7KAK9 | 96.4 | 668 | 18 | 1 | 1 | 668 | 1 | 662 | 0.0e+00 | 1315.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene22309 | 0.816778 | 4.64E-52 | -1.69E-46 |
MS.gene049190 | MS.gene22309 | 0.823429 | 1.39E-53 | -1.69E-46 |
MS.gene049254 | MS.gene22309 | 0.804406 | 2.19E-49 | -1.69E-46 |
MS.gene049404 | MS.gene22309 | 0.807959 | 3.92E-50 | -1.69E-46 |
MS.gene049585 | MS.gene22309 | 0.805891 | 1.07E-49 | -1.69E-46 |
MS.gene049711 | MS.gene22309 | 0.843514 | 1.34E-58 | -1.69E-46 |
MS.gene049807 | MS.gene22309 | 0.836636 | 8.33E-57 | -1.69E-46 |
MS.gene049821 | MS.gene22309 | 0.802556 | 5.31E-49 | -1.69E-46 |
MS.gene050241 | MS.gene22309 | 0.812029 | 5.21E-51 | -1.69E-46 |
MS.gene050273 | MS.gene22309 | 0.806986 | 6.30E-50 | -1.69E-46 |
MS.gene050559 | MS.gene22309 | 0.828229 | 1.01E-54 | -1.69E-46 |
MS.gene050561 | MS.gene22309 | 0.824877 | 6.36E-54 | -1.69E-46 |
MS.gene050562 | MS.gene22309 | 0.819123 | 1.37E-52 | -1.69E-46 |
MS.gene050807 | MS.gene22309 | 0.818698 | 1.71E-52 | -1.69E-46 |
MS.gene050901 | MS.gene22309 | 0.818097 | 2.34E-52 | -1.69E-46 |
MS.gene051102 | MS.gene22309 | 0.820207 | 7.75E-53 | -1.69E-46 |
MS.gene051247 | MS.gene22309 | 0.812512 | 4.09E-51 | -1.69E-46 |
MS.gene051279 | MS.gene22309 | 0.857504 | 1.56E-62 | -1.69E-46 |
MS.gene05157 | MS.gene22309 | 0.822022 | 2.96E-53 | -1.69E-46 |
MS.gene051664 | MS.gene22309 | 0.80617 | 9.37E-50 | -1.69E-46 |
MS.gene051719 | MS.gene22309 | 0.809535 | 1.80E-50 | -1.69E-46 |
MS.gene051720 | MS.gene22309 | 0.829317 | 5.51E-55 | -1.69E-46 |
MS.gene051744 | MS.gene22309 | 0.863863 | 1.84E-64 | -1.69E-46 |
MS.gene051957 | MS.gene22309 | 0.801212 | 1.00E-48 | -1.69E-46 |
MS.gene052133 | MS.gene22309 | 0.819428 | 1.17E-52 | -1.69E-46 |
MS.gene052239 | MS.gene22309 | -0.851642 | 7.77E-61 | -1.69E-46 |
MS.gene052307 | MS.gene22309 | 0.802046 | 6.76E-49 | -1.69E-46 |
MS.gene052514 | MS.gene22309 | 0.809069 | 2.27E-50 | -1.69E-46 |
MS.gene052516 | MS.gene22309 | 0.84142 | 4.80E-58 | -1.69E-46 |
MS.gene052609 | MS.gene22309 | 0.837002 | 6.72E-57 | -1.69E-46 |
MS.gene052665 | MS.gene22309 | 0.80383 | 2.89E-49 | -1.69E-46 |
MS.gene053079 | MS.gene22309 | 0.821248 | 4.47E-53 | -1.69E-46 |
MS.gene053144 | MS.gene22309 | 0.824333 | 8.54E-54 | -1.69E-46 |
MS.gene053154 | MS.gene22309 | 0.801901 | 7.24E-49 | -1.69E-46 |
MS.gene053226 | MS.gene22309 | 0.81624 | 6.12E-52 | -1.69E-46 |
MS.gene053563 | MS.gene22309 | 0.804992 | 1.65E-49 | -1.69E-46 |
MS.gene053581 | MS.gene22309 | 0.811285 | 7.56E-51 | -1.69E-46 |
MS.gene053599 | MS.gene22309 | 0.810642 | 1.04E-50 | -1.69E-46 |
MS.gene05364 | MS.gene22309 | 0.812981 | 3.23E-51 | -1.69E-46 |
MS.gene053998 | MS.gene22309 | 0.800386 | 1.48E-48 | -1.69E-46 |
MS.gene054576 | MS.gene22309 | 0.815469 | 9.10E-52 | -1.69E-46 |
MS.gene054584 | MS.gene22309 | 0.828785 | 7.41E-55 | -1.69E-46 |
MS.gene054824 | MS.gene22309 | 0.815629 | 8.38E-52 | -1.69E-46 |
MS.gene055144 | MS.gene22309 | 0.810216 | 1.29E-50 | -1.69E-46 |
MS.gene055465 | MS.gene22309 | 0.848448 | 6.09E-60 | -1.69E-46 |
MS.gene055466 | MS.gene22309 | 0.814073 | 1.85E-51 | -1.69E-46 |
MS.gene055467 | MS.gene22309 | 0.825197 | 5.34E-54 | -1.69E-46 |
MS.gene055469 | MS.gene22309 | 0.840248 | 9.75E-58 | -1.69E-46 |
MS.gene055537 | MS.gene22309 | 0.820056 | 8.39E-53 | -1.69E-46 |
MS.gene055890 | MS.gene22309 | 0.815995 | 6.94E-52 | -1.69E-46 |
MS.gene056005 | MS.gene22309 | 0.8073 | 5.41E-50 | -1.69E-46 |
MS.gene056308 | MS.gene22309 | 0.828003 | 1.14E-54 | -1.69E-46 |
MS.gene056507 | MS.gene22309 | 0.841949 | 3.48E-58 | -1.69E-46 |
MS.gene05686 | MS.gene22309 | 0.825074 | 5.72E-54 | -1.69E-46 |
MS.gene057915 | MS.gene22309 | 0.819717 | 1.00E-52 | -1.69E-46 |
MS.gene058010 | MS.gene22309 | 0.818447 | 1.95E-52 | -1.69E-46 |
MS.gene058649 | MS.gene22309 | 0.802318 | 5.94E-49 | -1.69E-46 |
MS.gene059015 | MS.gene22309 | 0.840186 | 1.01E-57 | -1.69E-46 |
MS.gene059439 | MS.gene22309 | 0.802001 | 6.90E-49 | -1.69E-46 |
MS.gene059625 | MS.gene22309 | 0.810082 | 1.38E-50 | -1.69E-46 |
MS.gene059965 | MS.gene22309 | 0.816025 | 6.84E-52 | -1.69E-46 |
MS.gene060167 | MS.gene22309 | 0.806702 | 7.24E-50 | -1.69E-46 |
MS.gene060519 | MS.gene22309 | 0.828368 | 9.35E-55 | -1.69E-46 |
MS.gene060587 | MS.gene22309 | 0.819844 | 9.38E-53 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22309.t1 | MTR_5g009350 | 96.407 | 668 | 18 | 1 | 1 | 668 | 1 | 662 | 0.0 | 1319 |
MS.gene22309.t1 | MTR_5g009360 | 96.108 | 668 | 20 | 2 | 1 | 668 | 1 | 662 | 0.0 | 1312 |
MS.gene22309.t1 | MTR_5g009350 | 96.330 | 654 | 18 | 1 | 1 | 654 | 1 | 648 | 0.0 | 1288 |
MS.gene22309.t1 | MTR_5g009350 | 95.000 | 560 | 22 | 1 | 1 | 560 | 1 | 554 | 0.0 | 1086 |
MS.gene22309.t1 | MTR_5g009350 | 96.196 | 552 | 15 | 1 | 1 | 552 | 1 | 546 | 0.0 | 1086 |
MS.gene22309.t1 | MTR_8g099420 | 75.152 | 660 | 158 | 1 | 4 | 663 | 5 | 658 | 0.0 | 1073 |
MS.gene22309.t1 | MTR_5g009360 | 94.074 | 540 | 26 | 2 | 129 | 668 | 3 | 536 | 0.0 | 1029 |
MS.gene22309.t1 | MTR_4g068670 | 57.295 | 658 | 273 | 3 | 6 | 663 | 5 | 654 | 0.0 | 793 |
MS.gene22309.t1 | MTR_1g034360 | 55.271 | 664 | 289 | 3 | 6 | 668 | 5 | 661 | 0.0 | 773 |
MS.gene22309.t1 | MTR_7g109830 | 50.601 | 666 | 321 | 2 | 4 | 667 | 2 | 661 | 0.0 | 680 |
MS.gene22309.t1 | MTR_1g086600 | 49.251 | 668 | 329 | 3 | 4 | 667 | 24 | 685 | 0.0 | 665 |
MS.gene22309.t1 | MTR_1g104810 | 39.711 | 622 | 354 | 9 | 48 | 665 | 18 | 622 | 1.87e-145 | 437 |
MS.gene22309.t1 | MTR_1g104810 | 39.557 | 632 | 361 | 9 | 38 | 665 | 75 | 689 | 2.26e-145 | 439 |
MS.gene22309.t1 | MTR_3g082660 | 33.083 | 665 | 411 | 12 | 24 | 660 | 68 | 726 | 6.91e-100 | 322 |
MS.gene22309.t1 | MTR_3g087980 | 32.031 | 640 | 400 | 13 | 48 | 660 | 61 | 692 | 3.08e-99 | 319 |
MS.gene22309.t1 | MTR_1g030290 | 32.515 | 652 | 398 | 14 | 42 | 662 | 56 | 696 | 5.68e-96 | 311 |
MS.gene22309.t1 | MTR_3g084450 | 26.519 | 675 | 400 | 21 | 48 | 661 | 81 | 720 | 2.95e-44 | 169 |
MS.gene22309.t1 | MTR_8g083170 | 25.112 | 669 | 419 | 18 | 48 | 661 | 83 | 724 | 5.43e-41 | 160 |
MS.gene22309.t1 | MTR_3g084470 | 25.893 | 672 | 405 | 24 | 48 | 661 | 79 | 715 | 3.38e-39 | 154 |
MS.gene22309.t1 | MTR_3g084450 | 27.778 | 486 | 283 | 15 | 220 | 661 | 51 | 512 | 2.11e-34 | 138 |
MS.gene22309.t1 | MTR_5g007640 | 26.733 | 505 | 259 | 19 | 77 | 555 | 95 | 514 | 3.26e-23 | 104 |
MS.gene22309.t1 | MTR_1g063110 | 24.397 | 373 | 217 | 13 | 193 | 555 | 158 | 475 | 5.60e-22 | 100 |
MS.gene22309.t1 | MTR_1g063120 | 25.170 | 441 | 249 | 17 | 205 | 637 | 178 | 545 | 9.83e-21 | 97.1 |
MS.gene22309.t1 | MTR_4g077900 | 24.573 | 468 | 277 | 14 | 91 | 550 | 1 | 400 | 1.23e-20 | 95.9 |
MS.gene22309.t1 | MTR_2g095510 | 27.869 | 366 | 185 | 16 | 199 | 550 | 161 | 461 | 6.75e-20 | 94.4 |
MS.gene22309.t1 | MTR_2g095510 | 28.198 | 344 | 169 | 15 | 199 | 528 | 161 | 440 | 8.58e-20 | 93.2 |
MS.gene22309.t1 | MTR_5g027500 | 25.436 | 401 | 219 | 12 | 179 | 550 | 141 | 490 | 4.13e-19 | 91.7 |
MS.gene22309.t1 | MTR_3g035130 | 22.316 | 475 | 286 | 14 | 74 | 537 | 28 | 430 | 2.00e-18 | 89.4 |
MS.gene22309.t1 | MTR_3g035130 | 22.316 | 475 | 286 | 14 | 74 | 537 | 28 | 430 | 2.28e-18 | 89.0 |
MS.gene22309.t1 | MTR_4g057730 | 25.846 | 325 | 158 | 10 | 220 | 528 | 186 | 443 | 5.93e-18 | 87.4 |
MS.gene22309.t1 | MTR_4g057730 | 26.346 | 353 | 174 | 13 | 220 | 555 | 186 | 469 | 1.49e-17 | 86.3 |
MS.gene22309.t1 | MTR_4g057730 | 26.346 | 353 | 174 | 13 | 220 | 555 | 186 | 469 | 1.57e-17 | 86.7 |
MS.gene22309.t1 | MTR_3g088870 | 26.478 | 423 | 243 | 16 | 144 | 555 | 120 | 485 | 1.44e-16 | 84.0 |
MS.gene22309.t1 | MTR_3g088880 | 25.118 | 422 | 247 | 14 | 144 | 555 | 121 | 483 | 1.85e-16 | 83.6 |
MS.gene22309.t1 | MTR_3g460770 | 26.446 | 363 | 204 | 15 | 201 | 555 | 161 | 468 | 2.67e-16 | 82.8 |
MS.gene22309.t1 | MTR_8g074120 | 27.105 | 380 | 173 | 19 | 200 | 550 | 114 | 418 | 5.35e-16 | 81.6 |
MS.gene22309.t1 | MTR_4g005750 | 26.630 | 368 | 196 | 14 | 202 | 555 | 161 | 468 | 2.92e-15 | 79.7 |
MS.gene22309.t1 | MTR_1g026310 | 22.756 | 312 | 184 | 9 | 221 | 528 | 203 | 461 | 3.05e-14 | 76.3 |
MS.gene22309.t1 | MTR_5g023730 | 23.301 | 515 | 293 | 19 | 68 | 557 | 35 | 472 | 1.09e-12 | 71.6 |
MS.gene22309.t1 | MTR_1g073180 | 31.325 | 166 | 109 | 5 | 392 | 555 | 321 | 483 | 1.10e-12 | 71.2 |
MS.gene22309.t1 | MTR_1g073180 | 31.325 | 166 | 109 | 5 | 392 | 555 | 299 | 461 | 1.14e-12 | 71.2 |
MS.gene22309.t1 | MTR_4g128337 | 23.339 | 557 | 300 | 24 | 27 | 555 | 18 | 475 | 1.92e-12 | 70.9 |
MS.gene22309.t1 | MTR_1569s0010 | 26.277 | 411 | 219 | 15 | 222 | 615 | 181 | 524 | 1.26e-11 | 68.2 |
MS.gene22309.t1 | MTR_2g105570 | 31.073 | 177 | 113 | 6 | 392 | 562 | 309 | 482 | 1.58e-11 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene22309.t1 | AT4G11030 | 74.242 | 660 | 164 | 1 | 3 | 662 | 4 | 657 | 0.0 | 1043 |
MS.gene22309.t1 | AT4G23850 | 73.867 | 662 | 167 | 1 | 3 | 664 | 4 | 659 | 0.0 | 1041 |
MS.gene22309.t1 | AT1G64400 | 71.903 | 662 | 179 | 2 | 1 | 661 | 1 | 656 | 0.0 | 1000 |
MS.gene22309.t1 | AT1G49430 | 53.163 | 664 | 303 | 3 | 7 | 668 | 8 | 665 | 0.0 | 747 |
MS.gene22309.t1 | AT2G47240 | 47.416 | 658 | 340 | 1 | 4 | 661 | 2 | 653 | 0.0 | 647 |
MS.gene22309.t1 | AT2G47240 | 47.416 | 658 | 340 | 1 | 4 | 661 | 2 | 653 | 0.0 | 647 |
MS.gene22309.t1 | AT2G47240 | 47.416 | 658 | 340 | 1 | 4 | 661 | 2 | 653 | 0.0 | 647 |
MS.gene22309.t1 | AT2G47240 | 48.000 | 600 | 306 | 1 | 62 | 661 | 1 | 594 | 0.0 | 595 |
MS.gene22309.t1 | AT1G49430 | 50.299 | 501 | 242 | 2 | 7 | 506 | 8 | 502 | 0.0 | 538 |
MS.gene22309.t1 | AT5G27600 | 39.297 | 626 | 361 | 8 | 38 | 660 | 78 | 687 | 2.19e-146 | 442 |
MS.gene22309.t1 | AT3G05970 | 40.127 | 628 | 355 | 9 | 38 | 661 | 78 | 688 | 6.68e-143 | 433 |
MS.gene22309.t1 | AT2G04350 | 32.669 | 652 | 401 | 13 | 39 | 660 | 76 | 719 | 1.44e-103 | 331 |
MS.gene22309.t1 | AT2G04350 | 32.669 | 652 | 401 | 13 | 39 | 660 | 76 | 719 | 1.44e-103 | 331 |
MS.gene22309.t1 | AT1G77590 | 32.188 | 640 | 396 | 13 | 48 | 660 | 62 | 690 | 2.90e-97 | 314 |
MS.gene22309.t1 | AT1G77590 | 33.996 | 553 | 341 | 11 | 121 | 660 | 3 | 544 | 4.57e-88 | 285 |
MS.gene22309.t1 | AT3G23790 | 26.300 | 673 | 402 | 26 | 48 | 661 | 85 | 722 | 1.28e-42 | 164 |
MS.gene22309.t1 | AT4G14070 | 25.409 | 673 | 395 | 24 | 48 | 660 | 101 | 726 | 4.79e-38 | 151 |
MS.gene22309.t1 | AT2G47245 | 43.750 | 96 | 54 | 0 | 2 | 97 | 33 | 128 | 4.86e-21 | 89.7 |
MS.gene22309.t1 | AT4G19010 | 27.463 | 335 | 189 | 11 | 217 | 548 | 199 | 482 | 1.88e-19 | 92.8 |
MS.gene22309.t1 | AT3G16170 | 24.606 | 508 | 315 | 16 | 99 | 598 | 124 | 571 | 5.29e-19 | 91.7 |
MS.gene22309.t1 | AT3G21240 | 27.493 | 371 | 193 | 15 | 202 | 557 | 174 | 483 | 5.67e-18 | 88.2 |
MS.gene22309.t1 | AT3G21240 | 27.493 | 371 | 193 | 15 | 202 | 557 | 174 | 483 | 6.14e-18 | 87.8 |
MS.gene22309.t1 | AT3G21240 | 27.493 | 371 | 193 | 15 | 202 | 557 | 174 | 483 | 6.14e-18 | 87.8 |
MS.gene22309.t1 | AT4G05160 | 26.184 | 359 | 200 | 14 | 199 | 550 | 166 | 466 | 4.20e-17 | 85.5 |
MS.gene22309.t1 | AT1G65060 | 24.138 | 493 | 258 | 19 | 77 | 540 | 74 | 479 | 2.96e-16 | 82.8 |
MS.gene22309.t1 | AT1G65060 | 23.958 | 480 | 251 | 19 | 77 | 529 | 74 | 466 | 6.60e-16 | 81.6 |
MS.gene22309.t1 | AT1G51680 | 28.329 | 353 | 180 | 14 | 223 | 562 | 203 | 495 | 6.71e-15 | 78.6 |
MS.gene22309.t1 | AT1G51680 | 28.329 | 353 | 180 | 14 | 223 | 562 | 203 | 495 | 7.12e-15 | 78.6 |
MS.gene22309.t1 | AT1G51680 | 28.161 | 348 | 177 | 14 | 223 | 557 | 203 | 490 | 2.07e-14 | 76.6 |
MS.gene22309.t1 | AT1G66120 | 22.222 | 522 | 292 | 18 | 80 | 570 | 41 | 479 | 8.03e-14 | 75.1 |
MS.gene22309.t1 | AT5G63380 | 26.630 | 368 | 199 | 15 | 195 | 550 | 172 | 480 | 1.71e-13 | 73.9 |
MS.gene22309.t1 | AT1G20480 | 22.969 | 357 | 202 | 13 | 210 | 555 | 198 | 492 | 1.99e-13 | 73.9 |
MS.gene22309.t1 | AT1G20510 | 25.392 | 319 | 175 | 12 | 218 | 528 | 182 | 445 | 3.53e-13 | 73.2 |
MS.gene22309.t1 | AT1G20510 | 25.392 | 319 | 175 | 12 | 218 | 528 | 182 | 445 | 5.15e-13 | 72.4 |
MS.gene22309.t1 | AT1G20510 | 25.392 | 319 | 175 | 12 | 218 | 528 | 182 | 445 | 6.37e-13 | 72.0 |
MS.gene22309.t1 | AT3G21230 | 33.728 | 169 | 104 | 7 | 392 | 555 | 330 | 495 | 1.23e-12 | 71.2 |
MS.gene22309.t1 | AT3G21230 | 33.728 | 169 | 104 | 7 | 392 | 555 | 330 | 495 | 1.33e-12 | 71.2 |
MS.gene22309.t1 | AT3G21230 | 33.728 | 169 | 104 | 7 | 392 | 555 | 330 | 495 | 1.61e-12 | 70.9 |
MS.gene22309.t1 | AT1G20500 | 32.121 | 165 | 102 | 7 | 371 | 528 | 290 | 451 | 9.38e-12 | 68.6 |
Find 164 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGTCTCAGATATGGGTTTA+TGG | 0.169098 | 5.4:+4013026 | MS.gene22309:intron |
ACACTTACTCTTGAGATATT+TGG | 0.177764 | 5.4:-4004609 | None:intergenic |
CTACCAAGCATAGGATTATT+TGG | 0.199402 | 5.4:-3999743 | None:intergenic |
ATTCTCTCTGTGGAGATTCT+AGG | 0.235210 | 5.4:+4013144 | MS.gene22309:CDS |
TGACCCAGTTCCATTTGATA+TGG | 0.272583 | 5.4:+4013694 | MS.gene22309:CDS |
TTCCTGGTCTTGATAGTTGC+TGG | 0.272872 | 5.4:+3999016 | MS.gene22309:CDS |
TTGAGATATTTGGTTGCATT+TGG | 0.288948 | 5.4:-4004599 | None:intergenic |
TATTAGGTGAAGCAAGGTTT+AGG | 0.289486 | 5.4:+4011425 | MS.gene22309:intron |
ATGTTCAAGTGCTGGTTTGC+TGG | 0.291698 | 5.4:-4013087 | None:intergenic |
TTGACACAGAAAATTTCTTC+TGG | 0.306587 | 5.4:+4011004 | MS.gene22309:CDS |
AGGGCATCGTAACCCATTTC+AGG | 0.320553 | 5.4:-4011996 | None:intergenic |
CTCCTCTTGGTGTGCTTGCA+AGG | 0.324542 | 5.4:-4012016 | None:intergenic |
CATAATCCACTCTGCAGAAT+TGG | 0.331511 | 5.4:-4002113 | None:intergenic |
CCAAGCATATCTAGTTCATT+TGG | 0.343611 | 5.4:-4011924 | None:intergenic |
ATATGGCATGGTGGTTCAAT+AGG | 0.345107 | 5.4:+4010620 | MS.gene22309:CDS |
ATAATCTTCATACTTCCATT+AGG | 0.361330 | 5.4:-4012258 | None:intergenic |
ATTAGGTGAAGCAAGGTTTA+GGG | 0.362139 | 5.4:+4011426 | MS.gene22309:intron |
GAACATTGGGCAGAAGAAAA+TGG | 0.369465 | 5.4:+4013104 | MS.gene22309:CDS |
GCATGTGGAAAGTTACTTAC+GGG | 0.372264 | 5.4:+4011493 | MS.gene22309:CDS |
TTTACACAAATTTCTCCTCT+TGG | 0.377362 | 5.4:-4012029 | None:intergenic |
CCTGGAATCTGTTCCTGAAA+TGG | 0.379308 | 5.4:+4011983 | MS.gene22309:CDS |
ACAAAAGAGGTTCTGGTTGA+TGG | 0.379543 | 5.4:+4012095 | MS.gene22309:CDS |
GCTCATGTCCTACAAGGATA+TGG | 0.379833 | 5.4:+4011527 | MS.gene22309:CDS |
TCTATCCGCAGCTGTGGTTA+TGG | 0.382635 | 5.4:+3999969 | MS.gene22309:CDS |
TTGGATATCAATACTCCCTT+GGG | 0.390960 | 5.4:-4010235 | None:intergenic |
AGTTGAATAATGTCTTCTTC+AGG | 0.393797 | 5.4:-4011033 | None:intergenic |
GGTGTAAAATGTGGTATTTA+TGG | 0.394524 | 5.4:+4002088 | MS.gene22309:CDS |
CCATTTCAGGAACAGATTCC+AGG | 0.395196 | 5.4:-4011983 | None:intergenic |
TTGGATTGGCAATATATTCA+TGG | 0.401527 | 5.4:+4004760 | MS.gene22309:CDS |
ATACCTAAGGTATCATATAA+AGG | 0.402549 | 5.4:-4003304 | None:intergenic |
AGACCTCACAAAAGAGGTTC+TGG | 0.403618 | 5.4:+4012088 | MS.gene22309:CDS |
TCTGCCCAATGTTCAAGTGC+TGG | 0.409379 | 5.4:-4013095 | None:intergenic |
TGTTCAAGTGCTGGTTTGCT+GGG | 0.410438 | 5.4:-4013086 | None:intergenic |
AGCTGGGGTGAAGCGGCTAT+TGG | 0.411629 | 5.4:+4010279 | MS.gene22309:CDS |
CTTGACGAGCTCTCAAAGAT+TGG | 0.417041 | 5.4:+4013182 | MS.gene22309:CDS |
TCAGTTGCTCAAATACTATC+AGG | 0.419597 | 5.4:+4013757 | MS.gene22309:CDS |
TATACAGCAATTGTGAGCTT+CGG | 0.424153 | 5.4:+4004699 | MS.gene22309:intron |
GTTCCTTTATATGATACCTT+AGG | 0.425559 | 5.4:+4003301 | MS.gene22309:CDS |
TCCTCTTGGTGTGCTTGCAA+GGG | 0.426219 | 5.4:-4012015 | None:intergenic |
CGATAGGCAGGTCCTCTTGA+AGG | 0.427103 | 5.4:-3998958 | None:intergenic |
CGTAGCATCTTCGCTAAAGA+TGG | 0.427521 | 5.4:+3998979 | MS.gene22309:CDS |
TGACAAAATTGTGTTCGATA+AGG | 0.427629 | 5.4:+4011314 | MS.gene22309:CDS |
CGTTCCATATCAAATGGAAC+TGG | 0.429994 | 5.4:-4013698 | None:intergenic |
AGAGGAGAAATTTGTGTAAA+GGG | 0.430349 | 5.4:+4012032 | MS.gene22309:CDS |
CCTTCCCGTCCACGATCTCT+CGG | 0.431909 | 5.4:-3999766 | None:intergenic |
GAGGGTAATAATACTCTCAT+TGG | 0.431912 | 5.4:-4010254 | None:intergenic |
TCCAGGCACGCATCCACATT+TGG | 0.432219 | 5.4:-4011966 | None:intergenic |
AGTATTATTACCCTCTTAGC+TGG | 0.433434 | 5.4:+4010262 | MS.gene22309:CDS |
GCAAACCAGCACTTGAACAT+TGG | 0.440808 | 5.4:+4013090 | MS.gene22309:CDS |
ATTGGAGAGTGGCAACCTAA+TGG | 0.442586 | 5.4:+4012243 | MS.gene22309:CDS |
TCATTGAGGAGACATTTATA+TGG | 0.450467 | 5.4:+4010603 | MS.gene22309:CDS |
AAGCAAGAAGTTGAAAAGCT+TGG | 0.451391 | 5.4:+4004741 | MS.gene22309:CDS |
GAAAACACCAATAACCTGTA+TGG | 0.451975 | 5.4:-4012124 | None:intergenic |
ATGGTGGTTCAATAGGCTTC+TGG | 0.452304 | 5.4:+4010627 | MS.gene22309:CDS |
CTGGAATCTGTTCCTGAAAT+GGG | 0.452978 | 5.4:+4011984 | MS.gene22309:CDS |
TCTTGTATGTCGGAGTGATA+AGG | 0.462915 | 5.4:-4013724 | None:intergenic |
ATTGGATATCAATACTCCCT+TGG | 0.463258 | 5.4:-4010236 | None:intergenic |
TCCTGGTCTTGATAGTTGCT+GGG | 0.464933 | 5.4:+3999017 | MS.gene22309:CDS |
ACCAAATGTGGATGCGTGCC+TGG | 0.469468 | 5.4:+4011965 | MS.gene22309:CDS |
CAAACCAGCACTTGAACATT+GGG | 0.469596 | 5.4:+4013091 | MS.gene22309:CDS |
TGCATGTGGAAAGTTACTTA+CGG | 0.469805 | 5.4:+4011492 | MS.gene22309:CDS |
CAGATTCAACAGAAGGAACT+TGG | 0.470972 | 5.4:-4012356 | None:intergenic |
AGGTCACGTTCCATATCAAA+TGG | 0.471049 | 5.4:-4013704 | None:intergenic |
CAAATGCATTTCTCAGGCAC+GGG | 0.472110 | 5.4:-4014297 | None:intergenic |
AAGTTGAATAACATGAAGAT+AGG | 0.474487 | 5.4:+4011261 | MS.gene22309:CDS |
CTTGGCTATAAATATTCTCC+AGG | 0.484171 | 5.4:-4012338 | None:intergenic |
GCCGCTTCACCCCAGCTAAG+AGG | 0.487102 | 5.4:-4010273 | None:intergenic |
CAACTATCAAGACCAGGAAT+AGG | 0.487174 | 5.4:-3999012 | None:intergenic |
AAGAGGAGAAATTTGTGTAA+AGG | 0.489441 | 5.4:+4012031 | MS.gene22309:CDS |
GTATTATTACCCTCTTAGCT+GGG | 0.491738 | 5.4:+4010263 | MS.gene22309:CDS |
GTTGATGGATGGTTCCATAC+AGG | 0.491965 | 5.4:+4012110 | MS.gene22309:CDS |
AGAGCATACCATATCCTTGT+AGG | 0.496672 | 5.4:-4011535 | None:intergenic |
GGCCTCTTCTTCTTGTATGT+CGG | 0.497266 | 5.4:-4013734 | None:intergenic |
TGATAAGTACACATCCTTCT+CGG | 0.497391 | 5.4:-4010549 | None:intergenic |
ATGTATACTAGCGGAACTAC+TGG | 0.501317 | 5.4:+4010208 | MS.gene22309:CDS |
TATCCAAATAATCCTATGCT+TGG | 0.502151 | 5.4:+3999740 | MS.gene22309:CDS |
TTCTCTCTGTGGAGATTCTA+GGG | 0.505172 | 5.4:+4013145 | MS.gene22309:CDS |
AGAAGTTGAAAAGCTTGGAT+TGG | 0.510392 | 5.4:+4004746 | MS.gene22309:CDS |
CAAATGGAACTGGGTCAAGA+TGG | 0.514025 | 5.4:-4013688 | None:intergenic |
CCAAATGAACTAGATATGCT+TGG | 0.522719 | 5.4:+4011924 | MS.gene22309:CDS |
GCGAAGATGCTACGATAGGC+AGG | 0.525534 | 5.4:-3998970 | None:intergenic |
ATTTATTCAACAGGGGACAT+TGG | 0.526253 | 5.4:+4012225 | MS.gene22309:intron |
CCCTCTTAGCTGGGGTGAAG+CGG | 0.526428 | 5.4:+4010272 | MS.gene22309:CDS |
CCGAGAGATCGTGGACGGGA+AGG | 0.526605 | 5.4:+3999766 | MS.gene22309:CDS |
CAAAGGTATGTGCGAGAGGA+AGG | 0.528894 | 5.4:-4010574 | None:intergenic |
TACCTTTGATAGAGTCATTG+AGG | 0.528961 | 5.4:+4010589 | MS.gene22309:CDS |
AAAGATTGGAAAGGAAAAGA+AGG | 0.529034 | 5.4:+4013196 | MS.gene22309:CDS |
TTGCAGGCTTGCAATGCTCA+TGG | 0.535649 | 5.4:+4003268 | MS.gene22309:intron |
CCGCTTCACCCCAGCTAAGA+GGG | 0.536761 | 5.4:-4010272 | None:intergenic |
ACGTGAAGACCTCACAAAAG+AGG | 0.543040 | 5.4:+4012082 | MS.gene22309:CDS |
GCTTGGTAGCCGAGAGATCG+TGG | 0.545320 | 5.4:+3999757 | MS.gene22309:CDS |
CCAAATGCATTTCTCAGGCA+CGG | 0.545670 | 5.4:-4014298 | None:intergenic |
TTCATTTGGTAATGAGACAA+AGG | 0.547604 | 5.4:-4011910 | None:intergenic |
CTTTCCACATGCAAAGATAG+AGG | 0.551047 | 5.4:-4011482 | None:intergenic |
TGCAGAGTGGATTATGAGCA+TGG | 0.556427 | 5.4:+4002120 | MS.gene22309:CDS |
CTATCAAGACCAGGAATAGG+AGG | 0.557455 | 5.4:-3999009 | None:intergenic |
AAGAGGTTCTGGTTGATGGA+TGG | 0.558942 | 5.4:+4012099 | MS.gene22309:CDS |
CTAGATATGCTTGGAACAGT+GGG | 0.559533 | 5.4:+4011933 | MS.gene22309:CDS |
CTCCGACATACAAGAAGAAG+AGG | 0.563503 | 5.4:+4013732 | MS.gene22309:CDS |
ACACAGAAAATTTCTTCTGG+AGG | 0.567816 | 5.4:+4011007 | MS.gene22309:CDS |
TAGGTGAAGCAAGGTTTAGG+GGG | 0.568060 | 5.4:+4011428 | MS.gene22309:intron |
ATATGTTGCTGTTGAAAACC+TGG | 0.568272 | 5.4:+4012320 | MS.gene22309:CDS |
GAAGTATGAAGATTATTGAT+CGG | 0.571287 | 5.4:+4012265 | MS.gene22309:CDS |
GAGGAGACATTTATATGGCA+TGG | 0.573299 | 5.4:+4010608 | MS.gene22309:CDS |
CGGAACTACTGGTGACCCCA+AGG | 0.575566 | 5.4:+4010219 | MS.gene22309:CDS |
CACGCATCCACATTTGGTAC+AGG | 0.577541 | 5.4:-4011960 | None:intergenic |
TATGACATGGTGATCAAAGT+CGG | 0.580833 | 5.4:+3999942 | MS.gene22309:CDS |
GTCGATGACATGTACAAAAG+TGG | 0.581315 | 5.4:+4014266 | MS.gene22309:CDS |
GCAGAAAAGATTCATCATTG+AGG | 0.583489 | 5.4:+3998903 | MS.gene22309:CDS |
CTCCTCAATGACTCTATCAA+AGG | 0.585877 | 5.4:-4010591 | None:intergenic |
TCAAGACCAGGAATAGGAGG+AGG | 0.586861 | 5.4:-3999006 | None:intergenic |
TTGTTTACAGTTGACCGAGA+AGG | 0.588773 | 5.4:+4010535 | MS.gene22309:intron |
AAGTTGTTAATTGAAGATCT+CGG | 0.589975 | 5.4:+4010800 | MS.gene22309:CDS |
AACAGCATGGCAAGTACAAG+TGG | 0.596150 | 5.4:+3999901 | MS.gene22309:intron |
ACTAGATATGCTTGGAACAG+TGG | 0.597796 | 5.4:+4011932 | MS.gene22309:CDS |
ACTTGTGCTCATGTCCTACA+AGG | 0.599867 | 5.4:+4011521 | MS.gene22309:CDS |
AGACATACAGATTCAACAGA+AGG | 0.600672 | 5.4:-4012363 | None:intergenic |
AGCAATTGTGAGCTTCGGAA+AGG | 0.607509 | 5.4:+4004704 | MS.gene22309:intron |
ACAAGTTTAGTACATATACT+CGG | 0.611149 | 5.4:-4010653 | None:intergenic |
GTTCAAGTGCTGGTTTGCTG+GGG | 0.614592 | 5.4:-4013085 | None:intergenic |
AGGTCTGACTGAAACTTGTG+CGG | 0.616035 | 5.4:+4011884 | MS.gene22309:intron |
GGTCTGACTGAAACTTGTGC+GGG | 0.616611 | 5.4:+4011885 | MS.gene22309:intron |
CTATCAAAGGTATGTGCGAG+AGG | 0.617476 | 5.4:-4010578 | None:intergenic |
GGGTCCTCCTGTACCAAATG+TGG | 0.620020 | 5.4:+4011953 | MS.gene22309:CDS |
CGAGCTCTCAAAGATTGGAA+AGG | 0.621868 | 5.4:+4013187 | MS.gene22309:CDS |
GTTAACAACAGCAACAAGGA+AGG | 0.622901 | 5.4:-4013063 | None:intergenic |
ATCTCTCGGCTACCAAGCAT+AGG | 0.625583 | 5.4:-3999752 | None:intergenic |
GGTAGCCGAGAGATCGTGGA+CGG | 0.626554 | 5.4:+3999761 | MS.gene22309:CDS |
ATTATTTGGATATTTCTCAA+CGG | 0.628492 | 5.4:-3999729 | None:intergenic |
GTAGCCGAGAGATCGTGGAC+GGG | 0.628575 | 5.4:+3999762 | MS.gene22309:CDS |
TATTATTACCCTCTTAGCTG+GGG | 0.630451 | 5.4:+4010264 | MS.gene22309:CDS |
TTTAGCGAAGATGCTACGAT+AGG | 0.633058 | 5.4:-3998974 | None:intergenic |
ATTTATTATATGCCATGCAG+AGG | 0.633133 | 5.4:+4004408 | MS.gene22309:CDS |
AGCACCTCTATCTTTGCATG+TGG | 0.633297 | 5.4:+4011478 | MS.gene22309:CDS |
CAAGTTTAGTACATATACTC+GGG | 0.633622 | 5.4:-4010652 | None:intergenic |
AGAAGAAAATGGTATATCTG+TGG | 0.634186 | 5.4:+4013115 | MS.gene22309:CDS |
GCCCTTGCAAGCACACCAAG+AGG | 0.634649 | 5.4:+4012014 | MS.gene22309:CDS |
GGAAATTCTATCCGCAGCTG+TGG | 0.634848 | 5.4:+3999963 | MS.gene22309:CDS |
TTAGGTGAAGCAAGGTTTAG+GGG | 0.636898 | 5.4:+4011427 | MS.gene22309:intron |
TTTGTAGTACCCCGAAAACA+AGG | 0.639552 | 5.4:-4012060 | None:intergenic |
GCATCCACATTTGGTACAGG+AGG | 0.639658 | 5.4:-4011957 | None:intergenic |
GTGGACTTCAATTCTCTCTG+TGG | 0.641098 | 5.4:+4013134 | MS.gene22309:CDS |
GTACTTGATAGAGTGTACTC+AGG | 0.645216 | 5.4:+4010860 | MS.gene22309:CDS |
TGATAGTATTTGAGCAACTG+AGG | 0.646048 | 5.4:-4013755 | None:intergenic |
ACGGAAGATAAACCTTCAAG+AGG | 0.646702 | 5.4:+3998946 | MS.gene22309:CDS |
AAATGCATTTCTCAGGCACG+GGG | 0.650215 | 5.4:-4014296 | None:intergenic |
GGAACTACTGGTGACCCCAA+GGG | 0.650731 | 5.4:+4010220 | MS.gene22309:CDS |
TCCCAGCAACTATCAAGACC+AGG | 0.653688 | 5.4:-3999018 | None:intergenic |
ATGGTGCCAATTCTGCAGAG+TGG | 0.660085 | 5.4:+4002107 | MS.gene22309:CDS |
GTTCCATATCAAATGGAACT+GGG | 0.663113 | 5.4:-4013697 | None:intergenic |
ATGCAATTGAGACCTCTGCA+TGG | 0.666854 | 5.4:-4004420 | None:intergenic |
CAACAGGGGACATTGGAGAG+TGG | 0.668033 | 5.4:+4012232 | MS.gene22309:intron |
TGGGGTTAACAACAGCAACA+AGG | 0.674167 | 5.4:-4013067 | None:intergenic |
GAAGTGGAGATGCTACTGCA+TGG | 0.677777 | 5.4:-4011290 | None:intergenic |
GAGACATTTATATGGCATGG+TGG | 0.693735 | 5.4:+4010611 | MS.gene22309:CDS |
TGTACAATAATGTATACTAG+CGG | 0.700165 | 5.4:+4010199 | MS.gene22309:CDS |
CTTCTCCATAACCACAGCTG+CGG | 0.713750 | 5.4:-3999974 | None:intergenic |
TGGATATCAATACTCCCTTG+GGG | 0.718015 | 5.4:-4010234 | None:intergenic |
GGTTTGCAGGGTGTAAAATG+TGG | 0.719983 | 5.4:+4002079 | MS.gene22309:intron |
TTACAAAGAAGTATATGACA+TGG | 0.723910 | 5.4:+3999929 | MS.gene22309:CDS |
AGAAGAAAAGAAGATACCTG+AGG | 0.728782 | 5.4:+4004447 | MS.gene22309:CDS |
TACACTCTATCAAGTACACG+AGG | 0.731549 | 5.4:-4010854 | None:intergenic |
TGTGGAAAGTTACTTACGGG+TGG | 0.735294 | 5.4:+4011496 | MS.gene22309:CDS |
AGAGTGGATTATGAGCATGG+AGG | 0.803600 | 5.4:+4002123 | MS.gene22309:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 3998898 | 4014307 | 3998898 | ID=MS.gene22309 |
chr5.4 | mRNA | 3998898 | 4014307 | 3998898 | ID=MS.gene22309.t1;Parent=MS.gene22309 |
chr5.4 | exon | 3998898 | 3999049 | 3998898 | ID=MS.gene22309.t1.exon1;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 3998898 | 3999049 | 3998898 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 3999724 | 3999787 | 3999724 | ID=MS.gene22309.t1.exon2;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 3999724 | 3999787 | 3999724 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 3999906 | 3999995 | 3999906 | ID=MS.gene22309.t1.exon3;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 3999906 | 3999995 | 3999906 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 4002088 | 4002144 | 4002088 | ID=MS.gene22309.t1.exon4;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 4002088 | 4002144 | 4002088 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 4003274 | 4003322 | 4003274 | ID=MS.gene22309.t1.exon5;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 4003274 | 4003322 | 4003274 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 4004392 | 4004468 | 4004392 | ID=MS.gene22309.t1.exon6;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 4004392 | 4004468 | 4004392 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 4004584 | 4004623 | 4004584 | ID=MS.gene22309.t1.exon7;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 4004584 | 4004623 | 4004584 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 4004706 | 4004800 | 4004706 | ID=MS.gene22309.t1.exon8;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 4004706 | 4004800 | 4004706 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 4010151 | 4010318 | 4010151 | ID=MS.gene22309.t1.exon9;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 4010151 | 4010318 | 4010151 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 4010545 | 4010673 | 4010545 | ID=MS.gene22309.t1.exon10;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 4010545 | 4010673 | 4010545 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 4010794 | 4010881 | 4010794 | ID=MS.gene22309.t1.exon11;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 4010794 | 4010881 | 4010794 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 4011002 | 4011068 | 4011002 | ID=MS.gene22309.t1.exon12;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 4011002 | 4011068 | 4011002 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 4011260 | 4011335 | 4011260 | ID=MS.gene22309.t1.exon13;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 4011260 | 4011335 | 4011260 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 4011431 | 4011548 | 4011431 | ID=MS.gene22309.t1.exon14;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 4011431 | 4011548 | 4011431 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 4011886 | 4012131 | 4011886 | ID=MS.gene22309.t1.exon15;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 4011886 | 4012131 | 4011886 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 4012238 | 4012377 | 4012238 | ID=MS.gene22309.t1.exon16;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 4012238 | 4012377 | 4012238 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 4013035 | 4013217 | 4013035 | ID=MS.gene22309.t1.exon17;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 4013035 | 4013217 | 4013035 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 4013659 | 4013778 | 4013659 | ID=MS.gene22309.t1.exon18;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 4013659 | 4013778 | 4013659 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
chr5.4 | exon | 4014260 | 4014307 | 4014260 | ID=MS.gene22309.t1.exon19;Parent=MS.gene22309.t1 |
chr5.4 | CDS | 4014260 | 4014307 | 4014260 | ID=cds.MS.gene22309.t1;Parent=MS.gene22309.t1 |
Gene Sequence |
Protein sequence |