Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21663.t1 | XP_003610997.1 | 97.9 | 662 | 14 | 0 | 1 | 662 | 1 | 662 | 0.00E+00 | 1331.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21663.t1 | Q9T0A0 | 75.6 | 656 | 160 | 0 | 3 | 658 | 4 | 659 | 1.4e-308 | 1059.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21663.t1 | G7KAK9 | 97.9 | 662 | 14 | 0 | 1 | 662 | 1 | 662 | 0.0e+00 | 1331.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21663.t1 | MTR_5g009350 | 97.885 | 662 | 14 | 0 | 1 | 662 | 1 | 662 | 0.0 | 1337 |
| MS.gene21663.t1 | MTR_5g009360 | 95.921 | 662 | 27 | 0 | 1 | 662 | 1 | 662 | 0.0 | 1308 |
| MS.gene21663.t1 | MTR_5g009350 | 97.685 | 648 | 15 | 0 | 1 | 648 | 1 | 648 | 0.0 | 1305 |
| MS.gene21663.t1 | MTR_5g009350 | 96.390 | 554 | 20 | 0 | 1 | 554 | 1 | 554 | 0.0 | 1100 |
| MS.gene21663.t1 | MTR_5g009350 | 97.619 | 546 | 13 | 0 | 1 | 546 | 1 | 546 | 0.0 | 1099 |
| MS.gene21663.t1 | MTR_8g099420 | 76.453 | 654 | 154 | 0 | 4 | 657 | 5 | 658 | 0.0 | 1093 |
| MS.gene21663.t1 | MTR_5g009360 | 93.820 | 534 | 33 | 0 | 129 | 662 | 3 | 536 | 0.0 | 1025 |
| MS.gene21663.t1 | MTR_4g068670 | 58.154 | 650 | 270 | 2 | 6 | 655 | 5 | 652 | 0.0 | 809 |
| MS.gene21663.t1 | MTR_1g034360 | 56.836 | 651 | 279 | 2 | 6 | 655 | 5 | 654 | 0.0 | 793 |
| MS.gene21663.t1 | MTR_7g109830 | 51.364 | 660 | 319 | 1 | 4 | 661 | 2 | 661 | 0.0 | 693 |
| MS.gene21663.t1 | MTR_1g086600 | 50.151 | 662 | 326 | 2 | 4 | 661 | 24 | 685 | 0.0 | 677 |
| MS.gene21663.t1 | MTR_1g104810 | 40.406 | 641 | 362 | 10 | 27 | 659 | 61 | 689 | 2.57e-154 | 462 |
| MS.gene21663.t1 | MTR_1g104810 | 40.747 | 616 | 350 | 8 | 48 | 659 | 18 | 622 | 4.54e-154 | 459 |
| MS.gene21663.t1 | MTR_3g082660 | 32.515 | 652 | 396 | 13 | 39 | 654 | 83 | 726 | 9.56e-99 | 318 |
| MS.gene21663.t1 | MTR_3g087980 | 31.776 | 642 | 393 | 14 | 48 | 654 | 61 | 692 | 1.68e-98 | 317 |
| MS.gene21663.t1 | MTR_1g030290 | 31.895 | 649 | 400 | 14 | 42 | 656 | 56 | 696 | 1.71e-94 | 306 |
| MS.gene21663.t1 | MTR_3g084450 | 27.177 | 666 | 401 | 22 | 48 | 655 | 81 | 720 | 4.45e-47 | 177 |
| MS.gene21663.t1 | MTR_8g083170 | 25.943 | 663 | 415 | 17 | 48 | 655 | 83 | 724 | 1.82e-43 | 167 |
| MS.gene21663.t1 | MTR_3g084470 | 26.727 | 666 | 401 | 24 | 48 | 655 | 79 | 715 | 2.10e-42 | 164 |
| MS.gene21663.t1 | MTR_3g084450 | 29.314 | 481 | 276 | 17 | 220 | 655 | 51 | 512 | 4.16e-38 | 148 |
| MS.gene21663.t1 | MTR_1g063110 | 25.348 | 359 | 201 | 14 | 193 | 537 | 158 | 463 | 1.54e-23 | 105 |
| MS.gene21663.t1 | MTR_5g007640 | 27.696 | 473 | 238 | 19 | 77 | 523 | 95 | 489 | 5.52e-23 | 103 |
| MS.gene21663.t1 | MTR_2g095510 | 28.814 | 354 | 177 | 16 | 199 | 537 | 161 | 454 | 4.54e-21 | 97.8 |
| MS.gene21663.t1 | MTR_4g077900 | 25.164 | 457 | 268 | 14 | 91 | 537 | 1 | 393 | 5.94e-21 | 97.1 |
| MS.gene21663.t1 | MTR_2g095510 | 28.614 | 339 | 168 | 15 | 199 | 522 | 161 | 440 | 8.32e-21 | 96.3 |
| MS.gene21663.t1 | MTR_1g063120 | 24.352 | 579 | 343 | 24 | 68 | 631 | 47 | 545 | 1.05e-20 | 96.7 |
| MS.gene21663.t1 | MTR_3g035130 | 23.851 | 457 | 272 | 14 | 74 | 522 | 28 | 416 | 2.94e-20 | 95.1 |
| MS.gene21663.t1 | MTR_3g035130 | 23.851 | 457 | 272 | 14 | 74 | 522 | 28 | 416 | 3.16e-20 | 94.7 |
| MS.gene21663.t1 | MTR_4g057730 | 24.945 | 453 | 247 | 17 | 109 | 537 | 74 | 457 | 7.87e-20 | 93.6 |
| MS.gene21663.t1 | MTR_4g057730 | 24.945 | 453 | 247 | 17 | 109 | 537 | 74 | 457 | 9.98e-20 | 93.6 |
| MS.gene21663.t1 | MTR_4g057730 | 26.115 | 314 | 165 | 10 | 220 | 522 | 186 | 443 | 4.65e-19 | 90.9 |
| MS.gene21663.t1 | MTR_5g027480 | 26.329 | 395 | 219 | 15 | 179 | 551 | 140 | 484 | 3.48e-18 | 89.0 |
| MS.gene21663.t1 | MTR_3g460770 | 26.257 | 358 | 205 | 14 | 201 | 549 | 161 | 468 | 2.78e-17 | 85.9 |
| MS.gene21663.t1 | MTR_5g027500 | 24.682 | 393 | 212 | 11 | 179 | 537 | 141 | 483 | 3.77e-17 | 85.5 |
| MS.gene21663.t1 | MTR_4g005750 | 24.066 | 482 | 286 | 16 | 80 | 547 | 54 | 469 | 2.00e-16 | 83.2 |
| MS.gene21663.t1 | MTR_3g088870 | 27.796 | 313 | 169 | 12 | 218 | 522 | 196 | 459 | 3.65e-16 | 82.4 |
| MS.gene21663.t1 | MTR_3g088880 | 25.260 | 384 | 221 | 15 | 151 | 522 | 128 | 457 | 1.30e-15 | 80.9 |
| MS.gene21663.t1 | MTR_8g074120 | 26.842 | 380 | 179 | 17 | 200 | 549 | 114 | 424 | 5.75e-15 | 78.6 |
| MS.gene21663.t1 | MTR_4g128337 | 23.954 | 526 | 301 | 24 | 27 | 535 | 18 | 461 | 1.91e-14 | 77.0 |
| MS.gene21663.t1 | MTR_1g026310 | 22.727 | 308 | 183 | 9 | 221 | 522 | 203 | 461 | 1.82e-13 | 73.9 |
| MS.gene21663.t1 | MTR_3g064420 | 21.183 | 524 | 290 | 18 | 80 | 564 | 41 | 480 | 4.65e-13 | 72.8 |
| MS.gene21663.t1 | MTR_1569s0010 | 26.355 | 406 | 219 | 15 | 222 | 609 | 181 | 524 | 4.69e-13 | 72.4 |
| MS.gene21663.t1 | MTR_5g023730 | 22.745 | 510 | 296 | 20 | 68 | 551 | 35 | 472 | 5.54e-13 | 72.4 |
| MS.gene21663.t1 | MTR_1g073180 | 33.766 | 154 | 97 | 5 | 386 | 537 | 321 | 471 | 7.94e-13 | 71.6 |
| MS.gene21663.t1 | MTR_1g073180 | 33.766 | 154 | 97 | 5 | 386 | 537 | 299 | 449 | 9.06e-13 | 71.6 |
| MS.gene21663.t1 | MTR_2g105570 | 23.494 | 498 | 293 | 21 | 57 | 535 | 33 | 461 | 1.54e-12 | 70.9 |
| MS.gene21663.t1 | MTR_2g030240 | 23.280 | 378 | 216 | 11 | 227 | 583 | 77 | 401 | 5.05e-11 | 65.9 |
| MS.gene21663.t1 | MTR_2g030240 | 23.280 | 378 | 216 | 11 | 227 | 583 | 171 | 495 | 8.00e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene21663.t1 | AT4G23850 | 75.610 | 656 | 160 | 0 | 3 | 658 | 4 | 659 | 0.0 | 1064 |
| MS.gene21663.t1 | AT4G11030 | 75.115 | 655 | 163 | 0 | 2 | 656 | 3 | 657 | 0.0 | 1055 |
| MS.gene21663.t1 | AT1G64400 | 72.866 | 656 | 177 | 1 | 1 | 655 | 1 | 656 | 0.0 | 1017 |
| MS.gene21663.t1 | AT1G49430 | 53.647 | 658 | 303 | 2 | 7 | 662 | 8 | 665 | 0.0 | 761 |
| MS.gene21663.t1 | AT2G47240 | 48.620 | 652 | 335 | 0 | 4 | 655 | 2 | 653 | 0.0 | 669 |
| MS.gene21663.t1 | AT2G47240 | 48.620 | 652 | 335 | 0 | 4 | 655 | 2 | 653 | 0.0 | 669 |
| MS.gene21663.t1 | AT2G47240 | 48.620 | 652 | 335 | 0 | 4 | 655 | 2 | 653 | 0.0 | 669 |
| MS.gene21663.t1 | AT2G47240 | 49.327 | 594 | 301 | 0 | 62 | 655 | 1 | 594 | 0.0 | 617 |
| MS.gene21663.t1 | AT1G49430 | 50.909 | 495 | 242 | 1 | 7 | 500 | 8 | 502 | 0.0 | 550 |
| MS.gene21663.t1 | AT5G27600 | 40.806 | 620 | 354 | 7 | 38 | 654 | 78 | 687 | 1.84e-156 | 468 |
| MS.gene21663.t1 | AT3G05970 | 41.479 | 622 | 349 | 8 | 38 | 655 | 78 | 688 | 8.86e-152 | 456 |
| MS.gene21663.t1 | AT2G04350 | 32.515 | 652 | 396 | 13 | 39 | 654 | 76 | 719 | 2.39e-105 | 336 |
| MS.gene21663.t1 | AT2G04350 | 32.515 | 652 | 396 | 13 | 39 | 654 | 76 | 719 | 2.39e-105 | 336 |
| MS.gene21663.t1 | AT1G77590 | 32.087 | 642 | 388 | 14 | 48 | 654 | 62 | 690 | 4.56e-96 | 310 |
| MS.gene21663.t1 | AT1G77590 | 33.874 | 555 | 333 | 12 | 121 | 654 | 3 | 544 | 5.22e-87 | 283 |
| MS.gene21663.t1 | AT3G23790 | 26.987 | 667 | 399 | 25 | 48 | 655 | 85 | 722 | 1.51e-43 | 167 |
| MS.gene21663.t1 | AT4G14070 | 26.276 | 666 | 392 | 25 | 48 | 654 | 101 | 726 | 3.19e-40 | 157 |
| MS.gene21663.t1 | AT4G19010 | 30.061 | 326 | 176 | 11 | 217 | 537 | 199 | 477 | 5.77e-22 | 100 |
| MS.gene21663.t1 | AT2G47245 | 50.000 | 76 | 38 | 0 | 22 | 97 | 53 | 128 | 7.89e-21 | 89.4 |
| MS.gene21663.t1 | AT3G16170 | 24.125 | 514 | 304 | 17 | 99 | 592 | 124 | 571 | 2.83e-19 | 92.4 |
| MS.gene21663.t1 | AT3G21230 | 27.966 | 354 | 202 | 12 | 201 | 549 | 190 | 495 | 8.80e-19 | 90.9 |
| MS.gene21663.t1 | AT3G21230 | 27.966 | 354 | 202 | 12 | 201 | 549 | 190 | 495 | 9.02e-19 | 90.9 |
| MS.gene21663.t1 | AT3G21230 | 27.966 | 354 | 202 | 12 | 201 | 549 | 190 | 495 | 9.90e-19 | 90.1 |
| MS.gene21663.t1 | AT4G05160 | 27.378 | 347 | 191 | 14 | 199 | 537 | 166 | 459 | 1.53e-18 | 90.1 |
| MS.gene21663.t1 | AT1G66120 | 23.782 | 513 | 289 | 18 | 80 | 564 | 41 | 479 | 2.32e-18 | 89.4 |
| MS.gene21663.t1 | AT1G65060 | 24.440 | 491 | 256 | 17 | 77 | 537 | 74 | 479 | 4.42e-18 | 88.6 |
| MS.gene21663.t1 | AT3G21240 | 28.125 | 352 | 181 | 15 | 202 | 537 | 174 | 469 | 8.42e-18 | 87.8 |
| MS.gene21663.t1 | AT3G21240 | 28.125 | 352 | 181 | 15 | 202 | 537 | 174 | 469 | 8.68e-18 | 87.4 |
| MS.gene21663.t1 | AT3G21240 | 28.125 | 352 | 181 | 15 | 202 | 537 | 174 | 469 | 8.68e-18 | 87.4 |
| MS.gene21663.t1 | AT1G65060 | 24.319 | 477 | 247 | 16 | 77 | 523 | 74 | 466 | 9.20e-18 | 87.4 |
| MS.gene21663.t1 | AT3G16910 | 22.781 | 597 | 341 | 21 | 73 | 623 | 43 | 565 | 5.57e-17 | 85.1 |
| MS.gene21663.t1 | AT1G65890 | 24.000 | 525 | 288 | 18 | 73 | 565 | 35 | 480 | 1.06e-16 | 84.3 |
| MS.gene21663.t1 | AT1G20500 | 26.367 | 311 | 165 | 13 | 221 | 522 | 196 | 451 | 9.28e-15 | 78.2 |
| MS.gene21663.t1 | AT1G51680 | 27.841 | 352 | 177 | 14 | 223 | 556 | 203 | 495 | 3.57e-14 | 76.3 |
| MS.gene21663.t1 | AT1G51680 | 27.841 | 352 | 177 | 14 | 223 | 556 | 203 | 495 | 3.72e-14 | 76.3 |
| MS.gene21663.t1 | AT1G51680 | 28.701 | 331 | 159 | 14 | 223 | 535 | 203 | 474 | 4.65e-14 | 75.5 |
| MS.gene21663.t1 | AT1G20510 | 25.455 | 330 | 184 | 12 | 218 | 537 | 182 | 459 | 1.61e-13 | 73.9 |
| MS.gene21663.t1 | AT1G20510 | 25.455 | 330 | 184 | 12 | 218 | 537 | 182 | 459 | 2.20e-13 | 73.6 |
| MS.gene21663.t1 | AT1G20510 | 25.397 | 315 | 174 | 12 | 218 | 522 | 182 | 445 | 7.54e-13 | 71.6 |
| MS.gene21663.t1 | AT1G62940 | 24.022 | 358 | 214 | 12 | 201 | 549 | 159 | 467 | 3.48e-11 | 66.6 |
Find 180 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACCAAGCATAGGATTATT+TGG | 0.199402 | 5.2:-2982446 | None:intergenic |
| ATTCTCTCTGTGGAGATTCT+AGG | 0.235210 | 5.2:+2989994 | MS.gene21663:CDS |
| AAGCAAGAAGTTGAAAAGTT+TGG | 0.248242 | 5.2:+2986535 | MS.gene21663:CDS |
| TGACCCAGTTCCATTTGATA+TGG | 0.272583 | 5.2:+2990547 | MS.gene21663:CDS |
| TTCCTGGTCTTGATAGTTGC+TGG | 0.272872 | 5.2:+2981725 | MS.gene21663:CDS |
| ATGTTCAAGTGCTGGTTTGC+TGG | 0.291698 | 5.2:-2989937 | None:intergenic |
| TATTAGGTGAAACAAGGTTT+AGG | 0.296760 | 5.2:+2988339 | MS.gene21663:intron |
| TTGACACAGAAAATTTCTTC+TGG | 0.306587 | 5.2:+2987915 | MS.gene21663:CDS |
| TTGAGACATTTGGTTGCATT+TGG | 0.310982 | 5.2:-2986395 | None:intergenic |
| AGGGCATCGTAACCCATTTC+AGG | 0.320553 | 5.2:-2988907 | None:intergenic |
| CTCCTCTTGGTGTGCTTGCA+AGG | 0.324542 | 5.2:-2988927 | None:intergenic |
| CATAATCCACTCTGCAGAAT+TGG | 0.331511 | 5.2:-2983233 | None:intergenic |
| GCTTGAATATATTCTTCTTC+CGG | 0.342080 | 5.2:-2989195 | None:intergenic |
| TTCACACAAATTTCTCCTCT+TGG | 0.342486 | 5.2:-2988940 | None:intergenic |
| CCAAGCATATCTAGTTCATT+TGG | 0.343611 | 5.2:-2988835 | None:intergenic |
| TTGGATTGGCAATATATTCA+TGG | 0.344016 | 5.2:+2986554 | MS.gene21663:CDS |
| ATATGGCATGGTGGTTCAAT+AGG | 0.345107 | 5.2:+2987474 | MS.gene21663:CDS |
| ATTAGGTGAAACAAGGTTTA+GGG | 0.346674 | 5.2:+2988340 | MS.gene21663:intron |
| CTGTCTCAGATATGGGTTTA+CGG | 0.347047 | 5.2:+2989876 | MS.gene21663:intron |
| ATAATCTTCATACTTCCATT+AGG | 0.361330 | 5.2:-2989169 | None:intergenic |
| ATGGGATATAATAAATTCTA+TGG | 0.363050 | 5.2:-2986193 | None:intergenic |
| CTCTCGCACACATCTTTGAT+AGG | 0.368081 | 5.2:+2987433 | MS.gene21663:CDS |
| GAACATTGGGCAGAAGAAAA+TGG | 0.369465 | 5.2:+2989954 | MS.gene21663:CDS |
| CCTGGAATCTGTTCCTGAAA+TGG | 0.379308 | 5.2:+2988894 | MS.gene21663:CDS |
| ACAAAAGAGGTTCTGGTTGA+TGG | 0.379543 | 5.2:+2989006 | MS.gene21663:CDS |
| GCTCATGTCATACAAGGATA+TGG | 0.382316 | 5.2:+2988441 | MS.gene21663:CDS |
| TCTATCCGCAGCTGTGGTTA+TGG | 0.382635 | 5.2:+2982672 | MS.gene21663:CDS |
| ACACTTACTCTTGAGACATT+TGG | 0.383591 | 5.2:-2986405 | None:intergenic |
| GTTCAATAGGCTTCTGGCGT+GGG | 0.383925 | 5.2:+2987487 | MS.gene21663:CDS |
| TTGGATATCAATACTCCCTT+GGG | 0.390960 | 5.2:-2987111 | None:intergenic |
| AGTTGAATAATGTCTTCTTC+AGG | 0.393797 | 5.2:-2987944 | None:intergenic |
| GGTGTAAAATGTGGTATTTA+TGG | 0.394524 | 5.2:+2983208 | MS.gene21663:CDS |
| CCATTTCAGGAACAGATTCC+AGG | 0.395196 | 5.2:-2988894 | None:intergenic |
| GCATGTGGAAAGTTACTTAC+GGG | 0.401281 | 5.2:+2988407 | MS.gene21663:CDS |
| ATACCTAAGGTATCATATAA+AGG | 0.402549 | 5.2:-2985201 | None:intergenic |
| TCAGTTGCTGAAATATTATC+AGG | 0.402552 | 5.2:+2990610 | MS.gene21663:CDS |
| AGACCTCACAAAAGAGGTTC+TGG | 0.403618 | 5.2:+2988999 | MS.gene21663:CDS |
| GGCCTCTTCTTCTTATATGT+TGG | 0.405195 | 5.2:-2990587 | None:intergenic |
| AATTATTAATTGAAGATCTC+GGG | 0.407840 | 5.2:+2987668 | MS.gene21663:CDS |
| TCTGCCCAATGTTCAAGTGC+TGG | 0.409379 | 5.2:-2989945 | None:intergenic |
| TGTTCAAGTGCTGGTTTGCT+GGG | 0.410438 | 5.2:-2989936 | None:intergenic |
| AGCTGGGGTGAAGCGGCTAT+TGG | 0.411629 | 5.2:+2987155 | MS.gene21663:CDS |
| TCTTATATGTTGGAGTGATA+AGG | 0.414078 | 5.2:-2990577 | None:intergenic |
| CTTGACGAGCTCTCAAAGAT+TGG | 0.417041 | 5.2:+2990032 | MS.gene21663:CDS |
| TATACAGCAATTGTGAGCTT+CGG | 0.424153 | 5.2:+2986493 | MS.gene21663:intron |
| TCCTCTTGAAGGTTTATCTT+CGG | 0.424838 | 5.2:-2981656 | None:intergenic |
| GTTCCTTTATATGATACCTT+AGG | 0.425559 | 5.2:+2985198 | MS.gene21663:CDS |
| TCCTCTTGGTGTGCTTGCAA+GGG | 0.426219 | 5.2:-2988926 | None:intergenic |
| CGTTCCATATCAAATGGAAC+TGG | 0.427600 | 5.2:-2990551 | None:intergenic |
| CAAAAGCATTTCTCAGGCAC+GGG | 0.429326 | 5.2:-2991357 | None:intergenic |
| GAGGGTAATAATACTCTCAT+TGG | 0.431912 | 5.2:-2987130 | None:intergenic |
| TCCAGGCACGCATCCACATT+TGG | 0.432219 | 5.2:-2988877 | None:intergenic |
| AGTATTATTACCCTCTTAGC+TGG | 0.433434 | 5.2:+2987138 | MS.gene21663:CDS |
| AAATTATTAATTGAAGATCT+CGG | 0.439867 | 5.2:+2987667 | MS.gene21663:CDS |
| GCAAACCAGCACTTGAACAT+TGG | 0.440808 | 5.2:+2989940 | MS.gene21663:CDS |
| ATTGGAGAGTGGCAACCTAA+TGG | 0.442586 | 5.2:+2989154 | MS.gene21663:CDS |
| CGATACGCAGGTCCTCTTGA+AGG | 0.448610 | 5.2:-2981667 | None:intergenic |
| TCATTGAGGAGACATTTATA+TGG | 0.450467 | 5.2:+2987457 | MS.gene21663:CDS |
| GAAAACATCAATAACCTGTA+TGG | 0.451975 | 5.2:-2989035 | None:intergenic |
| ATGGTGGTTCAATAGGCTTC+TGG | 0.452304 | 5.2:+2987481 | MS.gene21663:CDS |
| CTGGAATCTGTTCCTGAAAT+GGG | 0.452978 | 5.2:+2988895 | MS.gene21663:CDS |
| ATTGGATATCAATACTCCCT+TGG | 0.463258 | 5.2:-2987112 | None:intergenic |
| TCCTGGTCTTGATAGTTGCT+GGG | 0.464933 | 5.2:+2981726 | MS.gene21663:CDS |
| AGAAGTTGAAAAGTTTGGAT+TGG | 0.465697 | 5.2:+2986540 | MS.gene21663:CDS |
| AGGTCCCGTTCCATATCAAA+TGG | 0.466313 | 5.2:-2990557 | None:intergenic |
| ACCAAATGTGGATGCGTGCC+TGG | 0.469468 | 5.2:+2988876 | MS.gene21663:CDS |
| CAAACCAGCACTTGAACATT+GGG | 0.469596 | 5.2:+2989941 | MS.gene21663:CDS |
| TGACAAAGTTGTGTTCGATA+AGG | 0.474319 | 5.2:+2988228 | MS.gene21663:CDS |
| AGTTCCATTTGATATGGAAC+GGG | 0.480226 | 5.2:+2990553 | MS.gene21663:CDS |
| GGTTCAATAGGCTTCTGGCG+TGG | 0.482242 | 5.2:+2987486 | MS.gene21663:CDS |
| TGCATGTGGAAAGTTACTTA+CGG | 0.482991 | 5.2:+2988406 | MS.gene21663:CDS |
| CTTGGCTATAAATATTCTCC+AGG | 0.484171 | 5.2:-2989249 | None:intergenic |
| ACATATATGACTTAGGTTCT+GGG | 0.485223 | 5.2:+2986169 | MS.gene21663:intron |
| GCCGCTTCACCCCAGCTAAG+AGG | 0.487102 | 5.2:-2987149 | None:intergenic |
| CAACTATCAAGACCAGGAAT+AGG | 0.487174 | 5.2:-2981721 | None:intergenic |
| GTATTATTACCCTCTTAGCT+GGG | 0.491738 | 5.2:+2987139 | MS.gene21663:CDS |
| GTTGATGGATGGTTCCATAC+AGG | 0.491965 | 5.2:+2989021 | MS.gene21663:CDS |
| ATATGTTGCCGTTGAAAACC+TGG | 0.492865 | 5.2:+2989231 | MS.gene21663:CDS |
| CAGATTCAACAGAAGTAACT+TGG | 0.496861 | 5.2:-2989267 | None:intergenic |
| ATGTATACTAGCGGAACTAC+TGG | 0.501317 | 5.2:+2987084 | MS.gene21663:CDS |
| TATCCAAATAATCCTATGCT+TGG | 0.502151 | 5.2:+2982443 | MS.gene21663:CDS |
| TTCTCTCTGTGGAGATTCTA+GGG | 0.505172 | 5.2:+2989995 | MS.gene21663:CDS |
| ATCGATGACATGTACAAAAG+TGG | 0.505651 | 5.2:+2991326 | MS.gene21663:CDS |
| CAAATGGAACTGGGTCAAGA+TGG | 0.505692 | 5.2:-2990541 | None:intergenic |
| GCTTGGTAGCCGAGAGATTG+TGG | 0.513968 | 5.2:+2982460 | MS.gene21663:CDS |
| GTTTATTCAACAGGGGACAT+TGG | 0.514474 | 5.2:+2989136 | MS.gene21663:intron |
| CCTTCCCGTCCACAATCTCT+CGG | 0.515336 | 5.2:-2982469 | None:intergenic |
| TGAGACAAAGGTTCCCGCAC+AGG | 0.520727 | 5.2:-2988809 | None:intergenic |
| CAAAGATGTGTGCGAGAGGA+AGG | 0.521267 | 5.2:-2987428 | None:intergenic |
| CCAAATGAACTAGATATGCT+TGG | 0.522719 | 5.2:+2988835 | MS.gene21663:CDS |
| CATCTTTGATAGGGTCATTG+AGG | 0.523014 | 5.2:+2987443 | MS.gene21663:CDS |
| CCCTCTTAGCTGGGGTGAAG+CGG | 0.526428 | 5.2:+2987148 | MS.gene21663:CDS |
| CTCCAACATATAAGAAGAAG+AGG | 0.526676 | 5.2:+2990585 | MS.gene21663:CDS |
| AAAGATTGGAAAGGAAAAGA+AGG | 0.529034 | 5.2:+2990046 | MS.gene21663:CDS |
| TTCTTTACAGTTGACTGAGA+AGG | 0.529680 | 5.2:+2987389 | MS.gene21663:intron |
| AACACAACTTTGTCAAGAAG+TGG | 0.532570 | 5.2:-2988220 | None:intergenic |
| TTGCAGGCTTGCAATGCTCA+TGG | 0.535649 | 5.2:+2985165 | MS.gene21663:intron |
| CCGCTTCACCCCAGCTAAGA+GGG | 0.536761 | 5.2:-2987148 | None:intergenic |
| ACGTGAAGACCTCACAAAAG+AGG | 0.543040 | 5.2:+2988993 | MS.gene21663:CDS |
| GGTACCGCACAGAAAATAGT+TGG | 0.545593 | 5.2:-2987700 | None:intergenic |
| TTCATTTGGTAATGAGACAA+AGG | 0.547604 | 5.2:-2988821 | None:intergenic |
| CCAAAAGCATTTCTCAGGCA+CGG | 0.549321 | 5.2:-2991358 | None:intergenic |
| CAGTTCCATTTGATATGGAA+CGG | 0.552406 | 5.2:+2990552 | MS.gene21663:CDS |
| AAGTTGAATAACATGAAGAA+AGG | 0.555049 | 5.2:+2988175 | MS.gene21663:CDS |
| GAAGTATGAAGATTATTGAC+CGG | 0.555526 | 5.2:+2989176 | MS.gene21663:CDS |
| TGCAGAGTGGATTATGAGCA+TGG | 0.556427 | 5.2:+2983240 | MS.gene21663:CDS |
| CTATCAAGACCAGGAATAGG+AGG | 0.557455 | 5.2:-2981718 | None:intergenic |
| TCTCGCACACATCTTTGATA+GGG | 0.557834 | 5.2:+2987434 | MS.gene21663:CDS |
| AAGAGGTTCTGGTTGATGGA+TGG | 0.558942 | 5.2:+2989010 | MS.gene21663:CDS |
| CTAGATATGCTTGGAACAGT+GGG | 0.559533 | 5.2:+2988844 | MS.gene21663:CDS |
| CTTTCCACATGCAAGGATAG+AGG | 0.562273 | 5.2:-2988396 | None:intergenic |
| AGAGGAGAAATTTGTGTGAA+GGG | 0.564584 | 5.2:+2988943 | MS.gene21663:CDS |
| ACACAGAAAATTTCTTCTGG+AGG | 0.567816 | 5.2:+2987918 | MS.gene21663:CDS |
| GAGGAGACATTTATATGGCA+TGG | 0.573299 | 5.2:+2987462 | MS.gene21663:CDS |
| AAGAGGAGAAATTTGTGTGA+AGG | 0.574495 | 5.2:+2988942 | MS.gene21663:CDS |
| CGGAACTACTGGTGACCCCA+AGG | 0.575566 | 5.2:+2987095 | MS.gene21663:CDS |
| CACGCATCCACATTTGGTAC+AGG | 0.577541 | 5.2:-2988871 | None:intergenic |
| CCGAGAGATTGTGGACGGGA+AGG | 0.579412 | 5.2:+2982469 | MS.gene21663:CDS |
| TATGACATGGTGATCAAAGT+CGG | 0.580833 | 5.2:+2982645 | MS.gene21663:CDS |
| TCAAGACCAGGAATAGGAGG+AGG | 0.586861 | 5.2:-2981715 | None:intergenic |
| TGCAATTGAGACCTCTGCAT+GGG | 0.590133 | 5.2:-2986211 | None:intergenic |
| GGATATGTTTGACAGTTGAA+AGG | 0.594993 | 5.2:+2990497 | MS.gene21663:intron |
| AACAGCATGGCAAGTACAAG+TGG | 0.596150 | 5.2:+2982604 | MS.gene21663:intron |
| ACTAGATATGCTTGGAACAG+TGG | 0.597796 | 5.2:+2988843 | MS.gene21663:CDS |
| GCAGAAAAGATTCATCATTG+AGG | 0.599840 | 5.2:+2981612 | MS.gene21663:CDS |
| ACTTGTGCTCATGTCATACA+AGG | 0.602081 | 5.2:+2988435 | MS.gene21663:CDS |
| TAAGTAACTTTCCACATGCA+AGG | 0.606789 | 5.2:-2988403 | None:intergenic |
| CATATATGACTTAGGTTCTG+GGG | 0.607084 | 5.2:+2986170 | MS.gene21663:intron |
| AGCAATTGTGAGCTTCGGAA+AGG | 0.607509 | 5.2:+2986498 | MS.gene21663:intron |
| ATTATTAATTGAAGATCTCG+GGG | 0.613894 | 5.2:+2987669 | MS.gene21663:CDS |
| ACCGAAGATAAACCTTCAAG+AGG | 0.614180 | 5.2:+2981655 | MS.gene21663:CDS |
| GTTCAAGTGCTGGTTTGCTG+GGG | 0.614592 | 5.2:-2989935 | None:intergenic |
| TTCAATAGGCTTCTGGCGTG+GGG | 0.616697 | 5.2:+2987488 | MS.gene21663:CDS |
| TAGGTGAAACAAGGTTTAGG+GGG | 0.618879 | 5.2:+2988342 | MS.gene21663:intron |
| GGTAGCCGAGAGATTGTGGA+CGG | 0.618986 | 5.2:+2982464 | MS.gene21663:CDS |
| GGGTCCTCCTGTACCAAATG+TGG | 0.620020 | 5.2:+2988864 | MS.gene21663:CDS |
| ATGCAATTGAGACCTCTGCA+TGG | 0.620150 | 5.2:-2986212 | None:intergenic |
| TTAGGTGAAACAAGGTTTAG+GGG | 0.621786 | 5.2:+2988341 | MS.gene21663:intron |
| CGAGCTCTCAAAGATTGGAA+AGG | 0.621868 | 5.2:+2990037 | MS.gene21663:CDS |
| GTTAACAACAGCAACAAGGA+AGG | 0.622901 | 5.2:-2989913 | None:intergenic |
| AATATATTCAAGCTTTCACA+AGG | 0.623679 | 5.2:+2989205 | MS.gene21663:CDS |
| GGTCTGACTGAAACCTGTGC+GGG | 0.625404 | 5.2:+2988796 | MS.gene21663:intron |
| ATCTCTCGGCTACCAAGCAT+AGG | 0.625583 | 5.2:-2982455 | None:intergenic |
| ATTATTTGGATATTTCTCAA+CGG | 0.628492 | 5.2:-2982432 | None:intergenic |
| GCGAAGATGCTACGATACGC+AGG | 0.628778 | 5.2:-2981679 | None:intergenic |
| AGTACACTCTCTCAAGTACA+CGG | 0.629943 | 5.2:-2987723 | None:intergenic |
| TATTATTACCCTCTTAGCTG+GGG | 0.630451 | 5.2:+2987140 | MS.gene21663:CDS |
| ATTTATTATATCCCATGCAG+AGG | 0.633133 | 5.2:+2986200 | MS.gene21663:CDS |
| TGATAATATTTCAGCAACTG+AGG | 0.633306 | 5.2:-2990608 | None:intergenic |
| ACAGAGAGAATTGAAGTCCA+CGG | 0.634161 | 5.2:-2989982 | None:intergenic |
| GCCCTTGCAAGCACACCAAG+AGG | 0.634649 | 5.2:+2988925 | MS.gene21663:CDS |
| GGAAATTCTATCCGCAGCTG+TGG | 0.634848 | 5.2:+2982666 | MS.gene21663:CDS |
| TTTGTAGTACCCCGAAAACA+AGG | 0.639552 | 5.2:-2988971 | None:intergenic |
| GCATCCACATTTGGTACAGG+AGG | 0.639658 | 5.2:-2988868 | None:intergenic |
| GTACACTCTCTCAAGTACAC+GGG | 0.640845 | 5.2:-2987722 | None:intergenic |
| CTATCAAAGATGTGTGCGAG+AGG | 0.643677 | 5.2:-2987432 | None:intergenic |
| AGCACCTCTATCCTTGCATG+TGG | 0.644253 | 5.2:+2988392 | MS.gene21663:CDS |
| GGAACTACTGGTGACCCCAA+GGG | 0.650731 | 5.2:+2987096 | MS.gene21663:CDS |
| TCCCAGCAACTATCAAGACC+AGG | 0.653688 | 5.2:-2981727 | None:intergenic |
| GTGGACTTCAATTCTCTCTG+TGG | 0.654530 | 5.2:+2989984 | MS.gene21663:CDS |
| AAAAGCATTTCTCAGGCACG+GGG | 0.655886 | 5.2:-2991356 | None:intergenic |
| GTTCCATATCAAATGGAACT+GGG | 0.656082 | 5.2:-2990550 | None:intergenic |
| GAAGTGGACATGCTGCAGCA+TGG | 0.657031 | 5.2:-2988204 | None:intergenic |
| ATGGTGCCAATTCTGCAGAG+TGG | 0.660085 | 5.2:+2983227 | MS.gene21663:CDS |
| GTAGCCGAGAGATTGTGGAC+GGG | 0.663330 | 5.2:+2982465 | MS.gene21663:CDS |
| CAACAGGGGACATTGGAGAG+TGG | 0.668033 | 5.2:+2989143 | MS.gene21663:intron |
| AGGTCTGACTGAAACCTGTG+CGG | 0.671990 | 5.2:+2988795 | MS.gene21663:intron |
| TGGGGTTAACAACAGCAACA+AGG | 0.674167 | 5.2:-2989917 | None:intergenic |
| GTACTTGAGAGAGTGTACTC+AGG | 0.674223 | 5.2:+2987727 | MS.gene21663:CDS |
| AGAAGAAAATGGTATATCCG+TGG | 0.681052 | 5.2:+2989965 | MS.gene21663:CDS |
| GAGACATTTATATGGCATGG+TGG | 0.693735 | 5.2:+2987465 | MS.gene21663:CDS |
| TGTACAATAATGTATACTAG+CGG | 0.700165 | 5.2:+2987075 | MS.gene21663:CDS |
| TACACTCTCTCAAGTACACG+GGG | 0.702319 | 5.2:-2987721 | None:intergenic |
| CTTCTCCATAACCACAGCTG+CGG | 0.713750 | 5.2:-2982677 | None:intergenic |
| TGGATATCAATACTCCCTTG+GGG | 0.718015 | 5.2:-2987110 | None:intergenic |
| GGTTTGCAGGGTGTAAAATG+TGG | 0.719983 | 5.2:+2983199 | MS.gene21663:intron |
| TTACAAAGAAGTATATGACA+TGG | 0.723910 | 5.2:+2982632 | MS.gene21663:CDS |
| AGAAGAAAAGAAGATACCTG+AGG | 0.728782 | 5.2:+2986239 | MS.gene21663:CDS |
| TGTGGAAAGTTACTTACGGG+TGG | 0.735294 | 5.2:+2988410 | MS.gene21663:CDS |
| AGAGTGGATTATGAGCATGG+AGG | 0.803600 | 5.2:+2983243 | MS.gene21663:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 2981607 | 2991367 | 2981607 | ID=MS.gene21663 |
| chr5.2 | mRNA | 2981607 | 2991367 | 2981607 | ID=MS.gene21663.t1;Parent=MS.gene21663 |
| chr5.2 | exon | 2981607 | 2981758 | 2981607 | ID=MS.gene21663.t1.exon1;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2981607 | 2981758 | 2981607 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2982427 | 2982490 | 2982427 | ID=MS.gene21663.t1.exon2;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2982427 | 2982490 | 2982427 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2982609 | 2982698 | 2982609 | ID=MS.gene21663.t1.exon3;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2982609 | 2982698 | 2982609 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2983208 | 2983264 | 2983208 | ID=MS.gene21663.t1.exon4;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2983208 | 2983264 | 2983208 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2985171 | 2985219 | 2985171 | ID=MS.gene21663.t1.exon5;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2985171 | 2985219 | 2985171 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2986184 | 2986260 | 2986184 | ID=MS.gene21663.t1.exon6;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2986184 | 2986260 | 2986184 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2986380 | 2986419 | 2986380 | ID=MS.gene21663.t1.exon7;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2986380 | 2986419 | 2986380 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2986500 | 2986594 | 2986500 | ID=MS.gene21663.t1.exon8;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2986500 | 2986594 | 2986500 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2987027 | 2987194 | 2987027 | ID=MS.gene21663.t1.exon9;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2987027 | 2987194 | 2987027 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2987399 | 2987509 | 2987399 | ID=MS.gene21663.t1.exon10;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2987399 | 2987509 | 2987399 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2987661 | 2987748 | 2987661 | ID=MS.gene21663.t1.exon11;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2987661 | 2987748 | 2987661 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2987913 | 2987979 | 2987913 | ID=MS.gene21663.t1.exon12;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2987913 | 2987979 | 2987913 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2988174 | 2988249 | 2988174 | ID=MS.gene21663.t1.exon13;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2988174 | 2988249 | 2988174 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2988345 | 2988462 | 2988345 | ID=MS.gene21663.t1.exon14;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2988345 | 2988462 | 2988345 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2988797 | 2989042 | 2988797 | ID=MS.gene21663.t1.exon15;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2988797 | 2989042 | 2988797 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2989149 | 2989288 | 2989149 | ID=MS.gene21663.t1.exon16;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2989149 | 2989288 | 2989149 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2989885 | 2990067 | 2989885 | ID=MS.gene21663.t1.exon17;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2989885 | 2990067 | 2989885 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2990512 | 2990631 | 2990512 | ID=MS.gene21663.t1.exon18;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2990512 | 2990631 | 2990512 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| chr5.2 | exon | 2991320 | 2991367 | 2991320 | ID=MS.gene21663.t1.exon19;Parent=MS.gene21663.t1 |
| chr5.2 | CDS | 2991320 | 2991367 | 2991320 | ID=cds.MS.gene21663.t1;Parent=MS.gene21663.t1 |
| Gene Sequence |
| Protein sequence |