AlfalfaGEDB | MS.gene044334

M. sativa cultivar XinJiangDaYe / MS.gene044334

KEGG: K01897
GO: GO:0003674 GO:0003824
PFAM: PF00501.31

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044334.t1	XP_003601525.1	98.5	727	11	0	1	727	1	727	0.00E+00	1432.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044334.t1	Q9SJD4	70.2	704	210	0	24	727	17	720	2.6e-297	1022.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044334.t1	G7JI82	98.5	727	11	0	1	727	1	727	0.0e+00	1432.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene003833	MS.gene044334	PPI
MS.gene024020	MS.gene044334	PPI
MS.gene026390	MS.gene044334	PPI
MS.gene026629	MS.gene044334	PPI
MS.gene040821	MS.gene044334	PPI
MS.gene044334	MS.gene033453	PPI
MS.gene044334	MS.gene80076	PPI
MS.gene044334	MS.gene40645	PPI
MS.gene044334	MS.gene005494	PPI
MS.gene044334	MS.gene33594	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044334.t1	MTR_3g082660	98.487	727	11	0	1	727	1	727	0.0	1471
MS.gene044334.t1	MTR_1g030290	62.734	695	253	5	35	727	5	695	0.0	902
MS.gene044334.t1	MTR_3g087980	60.863	695	268	2	33	727	3	693	0.0	899
MS.gene044334.t1	MTR_1g104810	34.660	603	361	11	131	727	43	618	9.25e-112	352
MS.gene044334.t1	MTR_1g104810	33.643	645	381	13	89	727	82	685	6.17e-111	352
MS.gene044334.t1	MTR_5g009350	32.822	652	394	13	83	726	39	654	6.88e-101	324
MS.gene044334.t1	MTR_5g009350	33.281	640	383	13	83	714	39	642	5.25e-100	322
MS.gene044334.t1	MTR_5g009360	32.209	652	398	12	83	726	39	654	6.34e-99	319
MS.gene044334.t1	MTR_4g068670	32.343	606	372	14	132	726	73	651	3.28e-96	312
MS.gene044334.t1	MTR_8g099420	30.135	667	422	12	68	726	25	655	4.09e-96	311

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene044334.t1	AT2G04350	72.566	678	186	0	50	727	43	720	0.0	1043
MS.gene044334.t1	AT2G04350	72.566	678	186	0	50	727	43	720	0.0	1043
MS.gene044334.t1	AT1G77590	63.965	691	243	1	37	727	7	691	0.0	950
MS.gene044334.t1	AT1G77590	66.909	550	176	1	178	727	2	545	0.0	796
MS.gene044334.t1	AT5G27600	35.047	642	376	9	89	727	85	688	4.93e-124	386
MS.gene044334.t1	AT3G05970	34.477	641	379	10	89	726	85	687	7.02e-116	365
MS.gene044334.t1	AT4G23850	32.159	653	397	14	83	726	40	655	2.96e-103	331
MS.gene044334.t1	AT4G11030	31.651	654	399	14	83	726	40	655	7.74e-100	322
MS.gene044334.t1	AT1G64400	31.832	644	391	14	93	726	50	655	1.18e-97	316
MS.gene044334.t1	AT1G49430	30.699	658	403	14	80	727	44	658	3.46e-97	315

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Find 184 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCGTACTGTACTTGG+AGG	0.533192	3.4:+77893571	MS.gene044334:CDS
AAACCATATCCTTGCCCAAT+GGG	0.499985	3.4:-77895144	None:intergenic
AAAGTCAAGAAAGGAACCAA+GGG	0.572498	3.4:+77893048	MS.gene044334:CDS
AAATTTGAGAAAGTCCACTT+AGG	0.596901	3.4:+77891637	MS.gene044334:CDS
AACAAGGAAACTAATAGGGA+AGG	0.605953	3.4:+77891588	MS.gene044334:CDS
AACCATGAGGAACTACCGTT+TGG	0.405080	3.4:-77891274	None:intergenic
AACCTCCGATTTATGCTTTG+TGG	0.383577	3.4:+77893595	MS.gene044334:CDS
AAGAAGAAAGGTAAAGTACG+TGG	0.680735	3.4:+77891415	MS.gene044334:CDS
AAGAAGACCGGATGCAAAAT+TGG	0.336190	3.4:-77891704	None:intergenic
AAGGAAGCTGGCTAGGAGCT+TGG	0.448056	3.4:+77893509	MS.gene044334:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAACCGAAAACAAGAC+AGG	-	chr3.4:77891388-77891407	None:intergenic	30.0%
AAAAAAATCCGTACTGTACT+TGG	+	chr3.4:77893568-77893587	MS.gene044334:CDS	30.0%
AAATTTGAGAAAGTCCACTT+AGG	+	chr3.4:77891637-77891656	MS.gene044334:CDS	30.0%
AAGTTATACCAAGACAAAGT+CGG	-	chr3.4:77892578-77892597	None:intergenic	30.0%
AATAACCCTTATATGGTAGA+TGG	+	chr3.4:77897117-77897136	MS.gene044334:intron	30.0%
AATAAGCCATCTACCATATA+AGG	-	chr3.4:77897126-77897145	None:intergenic	30.0%
AATTCATCAATATCTGTGTG+GGG	+	chr3.4:77893647-77893666	MS.gene044334:CDS	30.0%
ACAATTCATCAATATCTGTG+TGG	+	chr3.4:77893645-77893664	MS.gene044334:CDS	30.0%
ACAGACTATCAACAGTATTT+CGG	+	chr3.4:77894045-77894064	MS.gene044334:intron	30.0%
ACGTCTAATAAAGTCAAGAA+AGG	+	chr3.4:77893039-77893058	MS.gene044334:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	77891265	77897328	77891265	ID=MS.gene044334
chr3.4	mRNA	77891265	77897328	77891265	ID=MS.gene044334.t1;Parent=MS.gene044334
chr3.4	exon	77891265	77891801	77891265	ID=MS.gene044334.t1.exon1;Parent=MS.gene044334.t1
chr3.4	CDS	77891265	77891801	77891265	ID=cds.MS.gene044334.t1;Parent=MS.gene044334.t1
chr3.4	exon	77891912	77891992	77891912	ID=MS.gene044334.t1.exon2;Parent=MS.gene044334.t1
chr3.4	CDS	77891912	77891992	77891912	ID=cds.MS.gene044334.t1;Parent=MS.gene044334.t1
chr3.4	exon	77892116	77892388	77892116	ID=MS.gene044334.t1.exon3;Parent=MS.gene044334.t1
chr3.4	CDS	77892116	77892388	77892116	ID=cds.MS.gene044334.t1;Parent=MS.gene044334.t1
chr3.4	exon	77892773	77892904	77892773	ID=MS.gene044334.t1.exon4;Parent=MS.gene044334.t1
chr3.4	CDS	77892773	77892904	77892773	ID=cds.MS.gene044334.t1;Parent=MS.gene044334.t1
chr3.4	exon	77892979	77893152	77892979	ID=MS.gene044334.t1.exon5;Parent=MS.gene044334.t1
chr3.4	CDS	77892979	77893152	77892979	ID=cds.MS.gene044334.t1;Parent=MS.gene044334.t1
chr3.4	exon	77893439	77893668	77893439	ID=MS.gene044334.t1.exon6;Parent=MS.gene044334.t1
chr3.4	CDS	77893439	77893668	77893439	ID=cds.MS.gene044334.t1;Parent=MS.gene044334.t1
chr3.4	exon	77895140	77895257	77895140	ID=MS.gene044334.t1.exon7;Parent=MS.gene044334.t1
chr3.4	CDS	77895140	77895257	77895140	ID=cds.MS.gene044334.t1;Parent=MS.gene044334.t1
chr3.4	exon	77895546	77895677	77895546	ID=MS.gene044334.t1.exon8;Parent=MS.gene044334.t1
chr3.4	CDS	77895546	77895677	77895546	ID=cds.MS.gene044334.t1;Parent=MS.gene044334.t1
chr3.4	exon	77895797	77895931	77895797	ID=MS.gene044334.t1.exon9;Parent=MS.gene044334.t1
chr3.4	CDS	77895797	77895931	77895797	ID=cds.MS.gene044334.t1;Parent=MS.gene044334.t1
chr3.4	exon	77896041	77896247	77896041	ID=MS.gene044334.t1.exon10;Parent=MS.gene044334.t1
chr3.4	CDS	77896041	77896247	77896041	ID=cds.MS.gene044334.t1;Parent=MS.gene044334.t1
chr3.4	exon	77897164	77897328	77897164	ID=MS.gene044334.t1.exon11;Parent=MS.gene044334.t1
chr3.4	CDS	77897164	77897328	77897164	ID=cds.MS.gene044334.t1;Parent=MS.gene044334.t1

Gene Sequence

>MS.gene044334

ATGGTTGATCCAAACGGTAGTTCCTCATGGTTGAAAAGTTTGAATATCTGTGAAACATTTGGGTTGAAAGATCATGGAGAACTTGGAATAGTGTTTGCTATAGTCATAGGCATCATTGTTCCTGTCTTGTTTTCGGTTTTTTTCTTAGGAAAGAAGAAAGGTAAAGTACGTGGTGTTCCGGTGGAAGTTAGTGGTGAATCGGGTTATGCTGTTCGTAATGCTCGATATTCTGAGTTGGTTGAAGTTCCTTGGAAAGGAGCTCCAACCATGGCTCATTTATTTGAGCAATCATGTAAAAAGCATACACATAATAGATTTCTTGGAACAAGGAAACTAATAGGGAAGGAGTTTGTTACATCTAGTGATGGCAGGAAATTTGAGAAAGTCCACTTAGGAGAATATGAATGGGAAACCTATGGAGAGGTCTTTGCTCGCGTGTCCAATTTTGCATCCGGTCTTCTTAAGCTAGGCCATGATATAGATAGTCATGTTGCGATTTTTTCTGATACTCGGGCTGAGTGGTTCATTGCCCTCCAGGTAAATTTGATTTACCAGCTTCATTTCGTTGAGTCATTCCATTAACTTGAGGCTTATATCGATTCTGCATTCACAAATTTTAATGAAATACTTGCTATGCTATACTTCAGGGTTGCTTCCGGCAGAATATAACGGTCGTCACTATTTATGCTTCTCTAGGTGAGGATGCTCTGATTCACTCACTGAACGAGGTAAGAAGTTCTTTTCTTTTGTTTAGTTTTGTAGACAGTAGAACTAGATGAAACATAGTTCATCACTGTAGTAACTAAAAATAGTGTGGCATGTTCTCACTTGAAGCTTTGTAATATGAACAGACCCAAGTATCTACTCTGATCTGTGACGTAAAGCTGCTGAATAAACTGGACGCAATAAGATCAAAACTAACATCTTTGCAAAATATAATTTACTTTGAAGACGATAGCAAAGAGGAACATGCTTTTTCAGAAGGTTTGAGCAGCAACTGTACAATTGCATCTTTTGATGAAGTTGAGAAACTTGGGAAAGAAAGTCCCGTCGAACCAAGCTTACCTTCCAAGAATGCTGTTGCAGTTGTCATGTATACAAGTGGCAGTACAGGTCTGGCAAAGGTTTGTTCCTTCTTCAAGTTTTGTTAAAGGCGTTCGTCTCTGTGTCTATGCATGCATAATCTTTTGTTCATATTTGTGATTTGCTGGATGTTTTTTAAATGTTTTGTCCAATGTCATGGTTATTAGTTTTCTCAACAACCTGATGCTTACTATAGAACGTAATTCAGAAATACGAGTAGTCGAGAACCGACTTTGTCTTGGTATAACTTTATTCTATATAGATTTTTAGGTGGTAAAGTATGCACAAGAACCATATTAAGTCATTATGTGCATATGATTGGCTTTTTCTTGCCTATTGACATTGATAGCTATGAGGATCTCCATCAAGTCAATTACATGTTACCCTTTGATTTGATAAGTTGTTAACTTTTTGTTATCGTTTAGGGTGTCATGATTACTCACGGGAACATTGTAGCCACCACAGCAGCTGTTATGACTGTGGTTCCAAATCTAGGTAGCAAGGACGTGTACTTGGCGTACTTACCCCTTGCTCATGTTTTTGAAATGGCAGCAGAGGTGATTCTTTTAGCCTTTAAGTCTTAATTGTCAAATTAGTTGGATGCTGTCTCTAAATTACTCTGGTTGTCCAGTCTGTTATGCTTGCTGCAGGTGTTGCAATTGGTTACGGCAGTCCTATGACTTTGACCGATACGTCTAATAAAGTCAAGAAAGGAACCAAGGGAGATGTTACTGTTTTAAAACCTACCCTTTTGACAGCGGTACCAGCTATTATTGATCGTATTCGAGATGGAGTTGTAAAAAAGGTGTGTCTACTAATCCACATCAACATTTTCATCTGCGCTACATTTAGTTTTTACTTTTTATGTGATGTTCAAATTTTACTATCATAATGCATTGATGGTCTTGTTAGATATCTGGATAGGATTTTCCAATTTGATAGCCACTTTTCAATCACGAATTGCTGTGACTTGCATTTATTTTTCCTTTTTCACTTTCCCCTAATGTCTTAAACTAATCATTGGAAAATTATTTTGTCTTCCTGACTCTTACCTATTTTGTCTTCCTGACTCTTACCTGTATTGTACTTAGGTGGAGGAAAAAGGGGGACTTGCCAAGAATCTTTTCCAGATTGCATACAAGCGCCGACTGGCTGCTGTAAAAGGAAGCTGGCTAGGAGCTTGGGGAGTGGAGAAGTTGGTGTGGGATACCATTATCTTTAAAAAAATCCGTACTGTACTTGGAGGCAACCTCCGATTTATGCTTTGTGGCGGAGCTCCTTTATCCGGAGATTCACAACAATTCATCAATATCTGTGTGGGGTAATGATTCTCATTTTATACCATGCATTATTTGGTTGGAACTAAACTAGTTGTATTATATGTATATGTGTGTATGCATATGTAGTTGGAGAAAATGAGACCTCTTGAGTTGCTTATACTTTTTTTCTTCGGTTTTTGTTCTGTAAAGAGAGGGGGAGAGAGAGAGGACGGATAGAGTTTCTGATATATTTGTACAGAACTACCACTATTATTAATATCATGGTGATATTAGTGGCAAAATTTCAGTAATAATCCAGCGTTATTCATCAATTTCTGGTTCAATTCTATCAAAATGTACCGGCGCTCTGGGTCCTTTGAGCTATGACCTGTAATTTCACACGCGAGGCCAGGTTTGAGTACCTCAAAATAGAGTCAAACAGACTATCAACAGTATTTCGGGATATATCTTCAAAAATATCCTTGAAATTATTGGAGGGGTGTGGGGCGAAATTGAGTGTCATTCACCAACCATTTCAAAAGCCTATGTTGTGCTACATGAATGGTTTTATATATAACAAGTCCTCTCCTGCAAGAGCTTTGTGGGTTGAAGTGTGGACAACGCAAATATCCACCTCATCTCGTATTGAAATTTAATGTATATTTAATTCTAGACGACATGGTATTAGGGGTTTTGGTACCATGTTCGGTGACTGGTGAGTAACATGATTAGTTTTTGTTGAAAAATTTGCCTAAATTGTGGCAACCCCCACAATCAGTTATTTAACCACTTAGTCTGCCTTCATTGCCCTGGTACAACACCTTTAGTGTGTTGGGTTGAGGGGTGGTTTTAGTCGCACACCGCCTAGGGATATGACTCTAAAAGATTTCCAAAATAATGGAATCAAAGAAAGCACTCTAAAATGTATGTCTCTTCATGGATTTGAAATTCAAATTAGCAAGGTGTCTTCTTTCATGATTGAATGGGTATATTCATGAATTAATAAGGCTTTCATTTGAGTCAATTCATGAAAGAATTGAGCTATCTGTTAAAAGTTATTTCTCTTACCATGTGGTATGTGGTTCTCTATACATTGAACAACAAAATTCATTTGTTTCTTATCCAAAATTCTGCCAAAATCAAAATTCTAAATCATCCTCTCTTTTCTCTTTTCTCATATTTCCTATTCCACTAGATAGGATAAAGGAAAATATATTCCTTAAACAACTTTCAAGACTCATGAGGGGTTCTGTATGTTACTTGTGAACTATCCATTGCATCCTTCTCTTTCTAGTCTCTCATGAATGAGACGCTCAAACCATTTCTATGGAAATTTACGTTAGTGTTTTTTTGATGACATACCGATTTTCAGAAAAAATCAACAATACTCACTTGGTCCATTTGAGATTCATTCTTTAACTATTACTGGTTCAAGTTATATTGAAGTTGAAAAAAAGAACTCTATTATTTCTAAACCACACCTCTTTTTGTCCGACTAGAGTTATAATTCTTTGTATTTATTTATGTCGACAGGGCTCCCATTGGGCAAGGATATGGTTTGACCGAAACATTTGCTGGGGCTGCCTTCTCTGAGGCGGATGACTACAGTGTGGGGCGTGTTGGTCCACCTCTGCCTTGTTGCTACATTAAGGTATGCTATATATCGTATTAACTAAAAATCAGTGCATTGAACTTCCAACTTATACTTATTTATAGATGTTGCATTGAATTATTGTAATAGTCATTAATTATTATAGTTTTCATGCTGGTGAGTAGTAAAACTTATTGGACTTTGAAGATCAGTGAGAAGTTAGTAACATCTCAGAAATATTATCTCTTAAGCTGTTATAGAACTTGCAGTTGGTGCTATTTATGAGCCTCAAATAGGGGGGGGGGGGGGGAATTTGATTGTTATTAATTTGGTTCGTTGGTTGTATAGCTTGTTTCTTGGGAAGAAGGAGGGTATCTATCATCGGACAAACCAATGCCACGAGGAGAGGTTGTAGTTGGCGGTTTCAGTGTGACAGCTGGTTATTTTAAGAATCAAGATAAAACTGATGAAGCGTTCAAGGTAATTTTCTCACTTAAAGTTATGTGCATGTCATTTTACCTTTTAATTTTCTTCATTTGCATGTAAATTTGCTTTTGCTGATTAATAAGTAGCACATGTGATTTTTCAACTTGGTACAGGTTGATGAGAAAGGTGTGCGCTGGTTTTATACTGGTGACATTGGGCGATTCCATCCTGATGGGTGCCTCGAAATCATCGATAGGAAGAAGGATATTGTCAAACTTCAACATGGAGAATATATCTCTCTTGGAAAGGTGACTCAAACTATACCTTGTCGTTCTAAAATCACGACGCAATACTGACGAGATTCACAGTAAAATTTTCAGGGTCTAACATTAGTCTTTCATTTTAATGTAATGGCAGGTTGAGGCAGCACTCGCGTCATGTGATTATGTGGATAGTATAATGGTGCATGCAGACCCCTTTCACAGTTACTGTGTTGCTCTAGCTGTTGCTTCACGTCAGTCTCTGGAAAAGTGGGCCCAAGAAACTGGTATCGAATACAAAGATTTTCCTGATCTCTGTAACAAACCTGAAGCTGTCACTGAGGTTCTGCAGTCCATTTCCAAGGTTAGCTAATATGTGGATAGTTACTTGTTTGCTGGCTATCCAGGATTTAATCGATGGATTATTCATTAATAATTTATCAATTTGAAGATGAAGTAACACTTGTCGCGTACTACCACACTTAAATTAAGATGCCGAAAATGTTTAATTTTTCTTCATTTATTAGACTGCTTGAATATTTAAGGTGACAAATAAGAACACTGAAAATAAACTATGTAAAGTTTGTTTAAGACTATGTTGGATTCAACAAAACATAAAGGCACCATCATTACACAACCTCCATCCAACATCTTAAACTTTTAGTAGAATTGGTCCTTGACATGTTACTTGAGCCGCAATGACCTAATGGTCAAGAGATTGATCATTACCGCATCCATACTTCTGAATCAGGTTTATTTTTAGTTTAAGGGACTCATATTCTATCCACCCTCAAATTTGAAGCGCTCTTGCATTATAGGGATGTTGTGCACATGATTCGAGTTGGGTGGATGAAATAGATGAATTCTGATATGACATATTATTGCAGAGTACATATCAAACTCAGACAGATTCTACTATGATACCAACCAAAATCTGTGATATTAAATGGTGTCTAGCAAAGTGTCAACAAGAACAGAAAAGTATGTGTTGTGGATAAGAATGCTGATGTAGATTAATGAACAGTCATAAAAGAATATATGAGATTAGCTGTTAGTGTAGAAAAAAAATTACAAACTCATCCCGGTCATTAGCTCACATGGTCAGGAGACCAATAGACTAGTAAGAAAGGTGGATCAAATGCAAGATGTTCATGTTTAAAGGGATGGAAAAAAAAACCCGTAAAATGAGCTTTTTCTATTATGTTTTAACAAGGTAAACTACATTGCAAGTTTAATAACCCTTATATGGTAGATGGCTTATTTTACTTTGTTAATTTCAGGCTGCAAAAGCTGCAAAGCTGCAAAAAACTGAAGTTCCTGCAAAGATTAAGCTGTTGGCGGATCCATGGACACCTGAATCTGGATTAGTTACTGCTGCTCTCAAGATAAAGAGAGAACAGCTGAAAGCCAAATTCAATGATGATCTTCAGAAGTTGTATGCATGA

Protein sequence

>MS.gene044334.t1

MVDPNGSSSWLKSLNICETFGLKDHGELGIVFAIVIGIIVPVLFSVFFLGKKKGKVRGVPVEVSGESGYAVRNARYSELVEVPWKGAPTMAHLFEQSCKKHTHNRFLGTRKLIGKEFVTSSDGRKFEKVHLGEYEWETYGEVFARVSNFASGLLKLGHDIDSHVAIFSDTRAEWFIALQGCFRQNITVVTIYASLGEDALIHSLNETQVSTLICDVKLLNKLDAIRSKLTSLQNIIYFEDDSKEEHAFSEGLSSNCTIASFDEVEKLGKESPVEPSLPSKNAVAVVMYTSGSTGLAKGVMITHGNIVATTAAVMTVVPNLGSKDVYLAYLPLAHVFEMAAESVMLAAGVAIGYGSPMTLTDTSNKVKKGTKGDVTVLKPTLLTAVPAIIDRIRDGVVKKVEEKGGLAKNLFQIAYKRRLAAVKGSWLGAWGVEKLVWDTIIFKKIRTVLGGNLRFMLCGGAPLSGDSQQFINICVGAPIGQGYGLTETFAGAAFSEADDYSVGRVGPPLPCCYIKLVSWEEGGYLSSDKPMPRGEVVVGGFSVTAGYFKNQDKTDEAFKVDEKGVRWFYTGDIGRFHPDGCLEIIDRKKDIVKLQHGEYISLGKVEAALASCDYVDSIMVHADPFHSYCVALAVASRQSLEKWAQETGIEYKDFPDLCNKPEAVTEVLQSISKAAKAAKLQKTEVPAKIKLLADPWTPESGLVTAALKIKREQLKAKFNDDLQKLYA