Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21662.t1 | XP_003610997.1 | 84.8 | 663 | 13 | 2 | 1 | 576 | 1 | 662 | 0.00E+00 | 1122.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21662.t1 | Q9T0A0 | 65.4 | 657 | 139 | 2 | 3 | 572 | 4 | 659 | 1.4e-256 | 886.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21662.t1 | G7KAK9 | 84.8 | 663 | 13 | 2 | 1 | 576 | 1 | 662 | 0.0e+00 | 1122.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049711 | MS.gene21662 | 0.800242 | 1.58E-48 | -1.69E-46 |
MS.gene050241 | MS.gene21662 | 0.810864 | 9.33E-51 | -1.69E-46 |
MS.gene051279 | MS.gene21662 | 0.822431 | 2.38E-53 | -1.69E-46 |
MS.gene051719 | MS.gene21662 | 0.801533 | 8.61E-49 | -1.69E-46 |
MS.gene051744 | MS.gene21662 | 0.834089 | 3.67E-56 | -1.69E-46 |
MS.gene052239 | MS.gene21662 | -0.819294 | 1.25E-52 | -1.69E-46 |
MS.gene053599 | MS.gene21662 | 0.806271 | 8.92E-50 | -1.69E-46 |
MS.gene054576 | MS.gene21662 | 0.803583 | 3.25E-49 | -1.69E-46 |
MS.gene059015 | MS.gene21662 | 0.808697 | 2.73E-50 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21662.t1 | MTR_5g009360 | 97.612 | 335 | 7 | 1 | 1 | 335 | 1 | 334 | 0.0 | 671 |
MS.gene21662.t1 | MTR_5g009360 | 97.143 | 245 | 7 | 0 | 332 | 576 | 418 | 662 | 1.28e-169 | 497 |
MS.gene21662.t1 | MTR_5g009350 | 96.119 | 335 | 12 | 1 | 1 | 335 | 1 | 334 | 0.0 | 663 |
MS.gene21662.t1 | MTR_5g009350 | 100.000 | 129 | 0 | 0 | 332 | 460 | 418 | 546 | 3.66e-83 | 271 |
MS.gene21662.t1 | MTR_5g009350 | 96.119 | 335 | 12 | 1 | 1 | 335 | 1 | 334 | 0.0 | 663 |
MS.gene21662.t1 | MTR_5g009350 | 94.891 | 137 | 7 | 0 | 332 | 468 | 418 | 554 | 1.50e-83 | 272 |
MS.gene21662.t1 | MTR_5g009350 | 96.119 | 335 | 12 | 1 | 1 | 335 | 1 | 334 | 0.0 | 663 |
MS.gene21662.t1 | MTR_5g009350 | 99.184 | 245 | 2 | 0 | 332 | 576 | 418 | 662 | 1.87e-173 | 507 |
MS.gene21662.t1 | MTR_5g009350 | 96.119 | 335 | 12 | 1 | 1 | 335 | 1 | 334 | 0.0 | 662 |
MS.gene21662.t1 | MTR_5g009350 | 99.134 | 231 | 2 | 0 | 332 | 562 | 418 | 648 | 1.23e-161 | 476 |
MS.gene21662.t1 | MTR_8g099420 | 75.000 | 332 | 82 | 1 | 4 | 335 | 5 | 335 | 0.0 | 536 |
MS.gene21662.t1 | MTR_8g099420 | 79.583 | 240 | 49 | 0 | 332 | 571 | 419 | 658 | 1.31e-139 | 420 |
MS.gene21662.t1 | MTR_5g009360 | 97.143 | 245 | 7 | 0 | 332 | 576 | 292 | 536 | 5.06e-172 | 498 |
MS.gene21662.t1 | MTR_5g009360 | 94.660 | 206 | 11 | 0 | 130 | 335 | 3 | 208 | 7.63e-132 | 395 |
MS.gene21662.t1 | MTR_4g068670 | 51.672 | 329 | 156 | 3 | 6 | 334 | 5 | 330 | 2.31e-116 | 360 |
MS.gene21662.t1 | MTR_4g068670 | 68.487 | 238 | 75 | 0 | 332 | 569 | 415 | 652 | 6.72e-116 | 358 |
MS.gene21662.t1 | MTR_1g034360 | 51.026 | 341 | 162 | 4 | 6 | 343 | 5 | 343 | 2.91e-115 | 357 |
MS.gene21662.t1 | MTR_1g034360 | 64.082 | 245 | 88 | 0 | 332 | 576 | 417 | 661 | 1.32e-111 | 347 |
MS.gene21662.t1 | MTR_1g086600 | 48.358 | 335 | 172 | 1 | 4 | 338 | 24 | 357 | 2.23e-108 | 340 |
MS.gene21662.t1 | MTR_1g086600 | 55.691 | 246 | 107 | 1 | 332 | 575 | 440 | 685 | 5.39e-86 | 281 |
MS.gene21662.t1 | MTR_7g109830 | 49.091 | 330 | 167 | 1 | 4 | 333 | 2 | 330 | 5.27e-108 | 338 |
MS.gene21662.t1 | MTR_7g109830 | 56.098 | 246 | 106 | 1 | 332 | 575 | 416 | 661 | 2.00e-85 | 279 |
MS.gene21662.t1 | MTR_1g104810 | 44.128 | 281 | 144 | 7 | 302 | 573 | 346 | 622 | 5.17e-59 | 207 |
MS.gene21662.t1 | MTR_1g104810 | 35.563 | 284 | 177 | 2 | 50 | 333 | 19 | 296 | 2.37e-53 | 192 |
MS.gene21662.t1 | MTR_1g104810 | 44.128 | 281 | 144 | 7 | 302 | 573 | 413 | 689 | 1.80e-58 | 207 |
MS.gene21662.t1 | MTR_1g104810 | 35.135 | 296 | 185 | 3 | 38 | 333 | 75 | 363 | 5.25e-53 | 192 |
MS.gene21662.t1 | MTR_3g087980 | 37.551 | 245 | 143 | 6 | 332 | 568 | 450 | 692 | 1.22e-37 | 148 |
MS.gene21662.t1 | MTR_3g087980 | 27.184 | 309 | 192 | 7 | 50 | 333 | 62 | 362 | 1.49e-30 | 127 |
MS.gene21662.t1 | MTR_3g082660 | 39.431 | 246 | 137 | 6 | 332 | 568 | 484 | 726 | 4.03e-36 | 144 |
MS.gene21662.t1 | MTR_3g082660 | 28.115 | 313 | 191 | 7 | 50 | 335 | 93 | 398 | 3.97e-31 | 129 |
MS.gene21662.t1 | MTR_1g030290 | 37.652 | 247 | 144 | 6 | 332 | 570 | 452 | 696 | 1.45e-34 | 139 |
MS.gene21662.t1 | MTR_1g030290 | 29.720 | 286 | 179 | 7 | 75 | 348 | 103 | 378 | 4.25e-30 | 125 |
MS.gene21662.t1 | MTR_3g084450 | 27.778 | 306 | 187 | 9 | 50 | 338 | 82 | 370 | 1.07e-19 | 93.6 |
MS.gene21662.t1 | MTR_3g084450 | 29.057 | 265 | 164 | 9 | 318 | 569 | 467 | 720 | 1.10e-14 | 77.8 |
MS.gene21662.t1 | MTR_1g063110 | 24.923 | 325 | 182 | 11 | 194 | 463 | 158 | 475 | 1.24e-18 | 89.7 |
MS.gene21662.t1 | MTR_8g083170 | 26.316 | 304 | 199 | 7 | 50 | 340 | 84 | 375 | 3.61e-18 | 89.0 |
MS.gene21662.t1 | MTR_8g083170 | 27.376 | 263 | 172 | 7 | 318 | 569 | 470 | 724 | 4.42e-14 | 75.9 |
MS.gene21662.t1 | MTR_3g084470 | 27.181 | 298 | 187 | 10 | 50 | 333 | 80 | 361 | 3.19e-17 | 85.9 |
MS.gene21662.t1 | MTR_3g084470 | 29.057 | 265 | 163 | 10 | 318 | 569 | 463 | 715 | 1.14e-13 | 74.3 |
MS.gene21662.t1 | MTR_1g063120 | 25.954 | 393 | 213 | 14 | 206 | 545 | 178 | 545 | 6.56e-17 | 84.3 |
MS.gene21662.t1 | MTR_8g074120 | 28.182 | 330 | 140 | 16 | 201 | 458 | 114 | 418 | 3.85e-16 | 82.0 |
MS.gene21662.t1 | MTR_3g084450 | 29.057 | 265 | 164 | 9 | 318 | 569 | 259 | 512 | 9.77e-15 | 77.4 |
MS.gene21662.t1 | MTR_3g084450 | 35.593 | 118 | 70 | 3 | 221 | 338 | 51 | 162 | 2.95e-11 | 66.6 |
MS.gene21662.t1 | MTR_5g023730 | 24.026 | 462 | 262 | 20 | 69 | 465 | 35 | 472 | 1.90e-13 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21662.t1 | AT4G23850 | 74.174 | 333 | 85 | 1 | 3 | 335 | 4 | 335 | 0.0 | 526 |
MS.gene21662.t1 | AT4G23850 | 75.918 | 245 | 59 | 0 | 332 | 576 | 419 | 663 | 1.13e-133 | 405 |
MS.gene21662.t1 | AT4G11030 | 73.373 | 338 | 89 | 1 | 2 | 339 | 3 | 339 | 3.17e-179 | 521 |
MS.gene21662.t1 | AT4G11030 | 75.918 | 245 | 59 | 0 | 332 | 576 | 419 | 663 | 1.02e-133 | 405 |
MS.gene21662.t1 | AT1G64400 | 70.058 | 344 | 100 | 3 | 1 | 342 | 1 | 343 | 4.54e-168 | 493 |
MS.gene21662.t1 | AT1G64400 | 75.210 | 238 | 59 | 0 | 332 | 569 | 419 | 656 | 2.35e-129 | 394 |
MS.gene21662.t1 | AT1G49430 | 46.707 | 334 | 177 | 1 | 7 | 340 | 8 | 340 | 1.25e-107 | 333 |
MS.gene21662.t1 | AT1G49430 | 63.095 | 84 | 30 | 1 | 332 | 414 | 419 | 502 | 8.57e-29 | 120 |
MS.gene21662.t1 | AT1G49430 | 63.158 | 247 | 89 | 2 | 332 | 576 | 419 | 665 | 3.64e-106 | 333 |
MS.gene21662.t1 | AT1G49430 | 46.707 | 334 | 177 | 1 | 7 | 340 | 8 | 340 | 6.60e-106 | 333 |
MS.gene21662.t1 | AT2G47240 | 45.345 | 333 | 181 | 1 | 4 | 336 | 2 | 333 | 1.95e-101 | 321 |
MS.gene21662.t1 | AT2G47240 | 54.622 | 238 | 108 | 0 | 332 | 569 | 416 | 653 | 1.65e-81 | 269 |
MS.gene21662.t1 | AT2G47240 | 45.345 | 333 | 181 | 1 | 4 | 336 | 2 | 333 | 1.95e-101 | 321 |
MS.gene21662.t1 | AT2G47240 | 54.622 | 238 | 108 | 0 | 332 | 569 | 416 | 653 | 1.65e-81 | 269 |
MS.gene21662.t1 | AT2G47240 | 45.345 | 333 | 181 | 1 | 4 | 336 | 2 | 333 | 1.95e-101 | 321 |
MS.gene21662.t1 | AT2G47240 | 54.622 | 238 | 108 | 0 | 332 | 569 | 416 | 653 | 1.65e-81 | 269 |
MS.gene21662.t1 | AT2G47240 | 46.350 | 274 | 147 | 0 | 63 | 336 | 1 | 274 | 3.52e-84 | 274 |
MS.gene21662.t1 | AT2G47240 | 54.622 | 238 | 108 | 0 | 332 | 569 | 357 | 594 | 2.72e-82 | 269 |
MS.gene21662.t1 | AT3G05970 | 49.174 | 242 | 117 | 5 | 332 | 569 | 449 | 688 | 3.87e-63 | 220 |
MS.gene21662.t1 | AT3G05970 | 34.459 | 296 | 187 | 3 | 38 | 333 | 78 | 366 | 4.92e-45 | 170 |
MS.gene21662.t1 | AT5G27600 | 43.011 | 279 | 149 | 6 | 294 | 568 | 415 | 687 | 3.97e-63 | 220 |
MS.gene21662.t1 | AT5G27600 | 35.082 | 305 | 191 | 3 | 38 | 342 | 78 | 375 | 1.48e-51 | 188 |
MS.gene21662.t1 | AT2G04350 | 39.024 | 246 | 138 | 6 | 332 | 568 | 477 | 719 | 5.03e-39 | 152 |
MS.gene21662.t1 | AT2G04350 | 27.564 | 312 | 192 | 7 | 49 | 333 | 85 | 389 | 3.82e-33 | 135 |
MS.gene21662.t1 | AT2G04350 | 39.024 | 246 | 138 | 6 | 332 | 568 | 477 | 719 | 5.03e-39 | 152 |
MS.gene21662.t1 | AT2G04350 | 27.564 | 312 | 192 | 7 | 49 | 333 | 85 | 389 | 3.82e-33 | 135 |
MS.gene21662.t1 | AT1G77590 | 38.776 | 245 | 140 | 6 | 332 | 568 | 302 | 544 | 7.75e-38 | 147 |
MS.gene21662.t1 | AT1G77590 | 27.803 | 223 | 139 | 5 | 122 | 333 | 3 | 214 | 1.49e-18 | 89.7 |
MS.gene21662.t1 | AT1G77590 | 38.776 | 245 | 140 | 6 | 332 | 568 | 448 | 690 | 2.43e-37 | 147 |
MS.gene21662.t1 | AT1G77590 | 25.566 | 309 | 194 | 7 | 50 | 333 | 63 | 360 | 1.34e-26 | 115 |
MS.gene21662.t1 | AT2G47245 | 49.351 | 77 | 38 | 1 | 22 | 98 | 53 | 128 | 3.37e-19 | 84.3 |
MS.gene21662.t1 | AT3G23790 | 27.124 | 306 | 190 | 12 | 50 | 340 | 86 | 373 | 3.63e-19 | 92.0 |
MS.gene21662.t1 | AT3G23790 | 28.679 | 265 | 166 | 9 | 318 | 569 | 468 | 722 | 3.15e-14 | 76.3 |
MS.gene21662.t1 | AT4G14070 | 25.212 | 353 | 225 | 12 | 4 | 340 | 60 | 389 | 4.21e-17 | 85.5 |
MS.gene21662.t1 | AT4G05160 | 25.890 | 309 | 171 | 12 | 200 | 458 | 166 | 466 | 4.98e-14 | 75.5 |
MS.gene21662.t1 | AT1G66120 | 35.965 | 114 | 57 | 3 | 365 | 478 | 382 | 479 | 8.82e-11 | 65.1 |
Find 150 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGTCTCAGATATGGGTTTA+TGG | 0.169098 | 5.2:+3019823 | MS.gene21662:intron |
ACACTTACTCTTGAGATATT+TGG | 0.177764 | 5.2:-3015160 | None:intergenic |
CTACCAAGCATAGGATTATT+TGG | 0.199402 | 5.2:-3010274 | None:intergenic |
ATTCTCTCTGTGGAGATTCT+AGG | 0.235210 | 5.2:+3019941 | MS.gene21662:CDS |
AAGCAAGAAGTTGAAAAGTT+TGG | 0.248242 | 5.2:+3015292 | MS.gene21662:CDS |
TGACCCAGTTCCATTTGATA+TGG | 0.272583 | 5.2:+3020496 | MS.gene21662:CDS |
TTCCTGGTCTTGATAGTTGC+TGG | 0.272872 | 5.2:+3009558 | MS.gene21662:CDS |
TTGAGATATTTGGTTGCATT+TGG | 0.288948 | 5.2:-3015150 | None:intergenic |
ATGTTCAAGTGCTGGTTTGC+TGG | 0.291698 | 5.2:-3019884 | None:intergenic |
GTTCAATAGGCTTCTGGCGC+GGG | 0.302933 | 5.2:+3016244 | MS.gene21662:CDS |
AGGGCATCGTAACCCATTTC+AGG | 0.320553 | 5.2:-3018793 | None:intergenic |
CTCCTCTTGGTGTGCTTGCA+AGG | 0.324542 | 5.2:-3018813 | None:intergenic |
CATAATCCACTCTGCAGAAT+TGG | 0.331511 | 5.2:-3012648 | None:intergenic |
CCAAGCATATCTAGTTCATT+TGG | 0.343611 | 5.2:-3018721 | None:intergenic |
TTGGATTGGCAATATATTCA+TGG | 0.344016 | 5.2:+3015311 | MS.gene21662:CDS |
ATATGGCATGGTGGTTCAAT+AGG | 0.345107 | 5.2:+3016231 | MS.gene21662:CDS |
ATAATCTTCATACTTCCATT+AGG | 0.361330 | 5.2:-3019055 | None:intergenic |
GAACATTGGGCAGAAGAAAA+TGG | 0.369465 | 5.2:+3019901 | MS.gene21662:CDS |
TTTACACAAATTTCTCCTCT+TGG | 0.377362 | 5.2:-3018826 | None:intergenic |
CCTGGAATCTGTTCCTGAAA+TGG | 0.379308 | 5.2:+3018780 | MS.gene21662:CDS |
ACAAAAGAGGTTCTGGTTGA+TGG | 0.379543 | 5.2:+3018892 | MS.gene21662:CDS |
TCTATCCGCAGCTGTGGTTA+TGG | 0.382635 | 5.2:+3010500 | MS.gene21662:CDS |
TTGGATATCAATACTCCCTT+GGG | 0.390960 | 5.2:-3015843 | None:intergenic |
GGTGTAAAATGTGGTATTTA+TGG | 0.394524 | 5.2:+3012623 | MS.gene21662:CDS |
CCATTTCAGGAACAGATTCC+AGG | 0.395196 | 5.2:-3018780 | None:intergenic |
ATACCTAAGGTATCATATAA+AGG | 0.402549 | 5.2:-3013850 | None:intergenic |
AGACCTCACAAAAGAGGTTC+TGG | 0.403618 | 5.2:+3018885 | MS.gene21662:CDS |
TCTGCCCAATGTTCAAGTGC+TGG | 0.409379 | 5.2:-3019892 | None:intergenic |
TGTTCAAGTGCTGGTTTGCT+GGG | 0.410438 | 5.2:-3019883 | None:intergenic |
AGCTGGGGTGAAGCGGCTAT+TGG | 0.411629 | 5.2:+3015887 | MS.gene21662:CDS |
CTTGACGAGCTCTCAAAGAT+TGG | 0.417041 | 5.2:+3019979 | MS.gene21662:CDS |
TCAGTTGCTCAAATACTATC+AGG | 0.419597 | 5.2:+3020559 | MS.gene21662:CDS |
GTTCCTTTATATGATACCTT+AGG | 0.423072 | 5.2:+3013847 | MS.gene21662:CDS |
TATACAGCAATTGTGAGCTT+CGG | 0.424153 | 5.2:+3015250 | MS.gene21662:intron |
TCCTCTTGGTGTGCTTGCAA+GGG | 0.426219 | 5.2:-3018812 | None:intergenic |
CGTAGCATCTTCGCTAAAGA+TGG | 0.429693 | 5.2:+3009521 | MS.gene21662:CDS |
CGTTCCATATCAAATGGAAC+TGG | 0.429994 | 5.2:-3020500 | None:intergenic |
AGAGGAGAAATTTGTGTAAA+GGG | 0.430349 | 5.2:+3018829 | MS.gene21662:CDS |
GAGGGTAATAATACTCTCAT+TGG | 0.431912 | 5.2:-3015862 | None:intergenic |
TCCAGGCACGCATCCACATT+TGG | 0.432219 | 5.2:-3018763 | None:intergenic |
AGTATTATTACCCTCTTAGC+TGG | 0.433434 | 5.2:+3015870 | MS.gene21662:CDS |
GCAAACCAGCACTTGAACAT+TGG | 0.440808 | 5.2:+3019887 | MS.gene21662:CDS |
ATTGGAGAGTGGCAACCTAA+TGG | 0.442586 | 5.2:+3019040 | MS.gene21662:CDS |
CGATACGCAGGTCCTCTTGA+AGG | 0.448610 | 5.2:-3009500 | None:intergenic |
TCATTGAGGAGACATTTATA+TGG | 0.450467 | 5.2:+3016214 | MS.gene21662:CDS |
GAAAACACCAATAACCTGTA+TGG | 0.451975 | 5.2:-3018921 | None:intergenic |
ATGGTGGTTCAATAGGCTTC+TGG | 0.452304 | 5.2:+3016238 | MS.gene21662:CDS |
CTGGAATCTGTTCCTGAAAT+GGG | 0.452978 | 5.2:+3018781 | MS.gene21662:CDS |
TCTTGTATGTCGGAGTGATA+AGG | 0.462915 | 5.2:-3020526 | None:intergenic |
ATTGGATATCAATACTCCCT+TGG | 0.463258 | 5.2:-3015844 | None:intergenic |
TCCTGGTCTTGATAGTTGCT+GGG | 0.464933 | 5.2:+3009559 | MS.gene21662:CDS |
AGAAGTTGAAAAGTTTGGAT+TGG | 0.465697 | 5.2:+3015297 | MS.gene21662:CDS |
ACCAAATGTGGATGCGTGCC+TGG | 0.469468 | 5.2:+3018762 | MS.gene21662:CDS |
CAAACCAGCACTTGAACATT+GGG | 0.469596 | 5.2:+3019888 | MS.gene21662:CDS |
CAGATTCAACAGAAGGAACT+TGG | 0.470972 | 5.2:-3019153 | None:intergenic |
AGGTCACGTTCCATATCAAA+TGG | 0.471049 | 5.2:-3020506 | None:intergenic |
CAAATGCATTTCTCAGGCAC+GGG | 0.472110 | 5.2:-3021099 | None:intergenic |
CTTGGCTATAAATATTCTCC+AGG | 0.484171 | 5.2:-3019135 | None:intergenic |
ACATATATGACTTAGGTTCT+GGG | 0.485223 | 5.2:+3014923 | MS.gene21662:intron |
GCCGCTTCACCCCAGCTAAG+AGG | 0.487102 | 5.2:-3015881 | None:intergenic |
CAACTATCAAGACCAGGAAT+AGG | 0.487174 | 5.2:-3009554 | None:intergenic |
AAGAGGAGAAATTTGTGTAA+AGG | 0.489441 | 5.2:+3018828 | MS.gene21662:CDS |
GTATTATTACCCTCTTAGCT+GGG | 0.491738 | 5.2:+3015871 | MS.gene21662:CDS |
GTTGATGGATGGTTCCATAC+AGG | 0.491965 | 5.2:+3018907 | MS.gene21662:CDS |
GGTTCAATAGGCTTCTGGCG+CGG | 0.492279 | 5.2:+3016243 | MS.gene21662:CDS |
GGCCTCTTCTTCTTGTATGT+CGG | 0.497266 | 5.2:-3020536 | None:intergenic |
TGATAAGTACACATCCTTCT+CGG | 0.497391 | 5.2:-3016160 | None:intergenic |
ATGTATACTAGCGGAACTAC+TGG | 0.501317 | 5.2:+3015816 | MS.gene21662:CDS |
TATCCAAATAATCCTATGCT+TGG | 0.502151 | 5.2:+3010271 | MS.gene21662:CDS |
TTCTCTCTGTGGAGATTCTA+GGG | 0.505172 | 5.2:+3019942 | MS.gene21662:CDS |
GCTTGGTAGCCGAGAGATTG+TGG | 0.513968 | 5.2:+3010288 | MS.gene21662:CDS |
CAAATGGAACTGGGTCAAGA+TGG | 0.514025 | 5.2:-3020490 | None:intergenic |
CCTTCCCGTCCACAATCTCT+CGG | 0.515336 | 5.2:-3010297 | None:intergenic |
CCAAATGAACTAGATATGCT+TGG | 0.522719 | 5.2:+3018721 | MS.gene21662:CDS |
CCCTCTTAGCTGGGGTGAAG+CGG | 0.526428 | 5.2:+3015880 | MS.gene21662:CDS |
CAAAGGTATGTGCGAGAGGA+AGG | 0.528894 | 5.2:-3016185 | None:intergenic |
TACCTTTGATAGAGTCATTG+AGG | 0.528961 | 5.2:+3016200 | MS.gene21662:CDS |
AAAGATTGGAAAGGAAAAGA+AGG | 0.529034 | 5.2:+3019993 | MS.gene21662:CDS |
ATTGATTCAACAGGGGACAT+TGG | 0.530886 | 5.2:+3019022 | MS.gene21662:intron |
TTGCAGGCTTGCAATGCTCA+TGG | 0.535649 | 5.2:+3013814 | MS.gene21662:intron |
CCGCTTCACCCCAGCTAAGA+GGG | 0.536761 | 5.2:-3015880 | None:intergenic |
ACGTGAAGACCTCACAAAAG+AGG | 0.543040 | 5.2:+3018879 | MS.gene21662:CDS |
CCAAATGCATTTCTCAGGCA+CGG | 0.545670 | 5.2:-3021100 | None:intergenic |
TTCATTTGGTAATGAGACAA+AGG | 0.547604 | 5.2:-3018707 | None:intergenic |
ATATGTTGCTGTTGAAAACC+TGG | 0.555433 | 5.2:+3019117 | MS.gene21662:CDS |
TGCAGAGTGGATTATGAGCA+TGG | 0.556427 | 5.2:+3012655 | MS.gene21662:CDS |
CTATCAAGACCAGGAATAGG+AGG | 0.557455 | 5.2:-3009551 | None:intergenic |
AAGAGGTTCTGGTTGATGGA+TGG | 0.558942 | 5.2:+3018896 | MS.gene21662:CDS |
CTAGATATGCTTGGAACAGT+GGG | 0.559533 | 5.2:+3018730 | MS.gene21662:CDS |
CTCCGACATACAAGAAGAAG+AGG | 0.563503 | 5.2:+3020534 | MS.gene21662:CDS |
GAAGTATGAAGATTATTGAT+CGG | 0.571287 | 5.2:+3019062 | MS.gene21662:CDS |
GAGGAGACATTTATATGGCA+TGG | 0.573299 | 5.2:+3016219 | MS.gene21662:CDS |
CGGAACTACTGGTGACCCCA+AGG | 0.575566 | 5.2:+3015827 | MS.gene21662:CDS |
CACGCATCCACATTTGGTAC+AGG | 0.577541 | 5.2:-3018757 | None:intergenic |
CCGAGAGATTGTGGACGGGA+AGG | 0.579412 | 5.2:+3010297 | MS.gene21662:CDS |
TATGACATGGTGATCAAAGT+CGG | 0.580833 | 5.2:+3010473 | MS.gene21662:CDS |
GTCGATGACATGTACAAAAG+TGG | 0.581315 | 5.2:+3021068 | MS.gene21662:CDS |
CTCCTCAATGACTCTATCAA+AGG | 0.585877 | 5.2:-3016202 | None:intergenic |
TCAAGACCAGGAATAGGAGG+AGG | 0.586861 | 5.2:-3009548 | None:intergenic |
TTGTTTACAGTTGACCGAGA+AGG | 0.588773 | 5.2:+3016146 | MS.gene21662:intron |
AAGTTGTTAATTGAAGATCT+CGG | 0.589975 | 5.2:+3016414 | MS.gene21662:CDS |
AACAGCATGGCAAGTACAAG+TGG | 0.596150 | 5.2:+3010432 | MS.gene21662:intron |
ACTAGATATGCTTGGAACAG+TGG | 0.597796 | 5.2:+3018729 | MS.gene21662:CDS |
GCAGAAAAGATTCATCATTG+AGG | 0.599840 | 5.2:+3009445 | MS.gene21662:CDS |
AGACATACAGATTCAACAGA+AGG | 0.600672 | 5.2:-3019160 | None:intergenic |
CATATATGACTTAGGTTCTG+GGG | 0.601858 | 5.2:+3014924 | MS.gene21662:intron |
TTCAATAGGCTTCTGGCGCG+GGG | 0.604361 | 5.2:+3016245 | MS.gene21662:CDS |
AGCAATTGTGAGCTTCGGAA+AGG | 0.607509 | 5.2:+3015255 | MS.gene21662:intron |
GTTCAAGTGCTGGTTTGCTG+GGG | 0.614592 | 5.2:-3019882 | None:intergenic |
AGGTCTGACTGAAACTTGTG+CGG | 0.616035 | 5.2:+3018681 | MS.gene21662:intron |
GGTCTGACTGAAACTTGTGC+GGG | 0.616611 | 5.2:+3018682 | MS.gene21662:intron |
CTATCAAAGGTATGTGCGAG+AGG | 0.617476 | 5.2:-3016189 | None:intergenic |
AGGATTTGAGTTCATAAAAG+CGG | 0.618243 | 5.2:+3020466 | MS.gene21662:CDS |
GGTAGCCGAGAGATTGTGGA+CGG | 0.618986 | 5.2:+3010292 | MS.gene21662:CDS |
GGGTCCTCCTGTACCAAATG+TGG | 0.620020 | 5.2:+3018750 | MS.gene21662:CDS |
CGAGCTCTCAAAGATTGGAA+AGG | 0.621868 | 5.2:+3019984 | MS.gene21662:CDS |
GTTAACAACAGCAACAAGGA+AGG | 0.622901 | 5.2:-3019860 | None:intergenic |
AATATATTCAAGCTTTCACA+AGG | 0.623679 | 5.2:+3019091 | MS.gene21662:CDS |
ATCTCTCGGCTACCAAGCAT+AGG | 0.625583 | 5.2:-3010283 | None:intergenic |
ATTATTTGGATATTTCTCAA+CGG | 0.628492 | 5.2:-3010260 | None:intergenic |
GCGAAGATGCTACGATACGC+AGG | 0.628778 | 5.2:-3009512 | None:intergenic |
TATTATTACCCTCTTAGCTG+GGG | 0.630451 | 5.2:+3015872 | MS.gene21662:CDS |
ATTTATTATATGCCATGCAG+AGG | 0.633133 | 5.2:+3014954 | MS.gene21662:CDS |
AGAAGAAAATGGTATATCTG+TGG | 0.634186 | 5.2:+3019912 | MS.gene21662:CDS |
GCCCTTGCAAGCACACCAAG+AGG | 0.634649 | 5.2:+3018811 | MS.gene21662:CDS |
GGAAATTCTATCCGCAGCTG+TGG | 0.634848 | 5.2:+3010494 | MS.gene21662:CDS |
TTTGTAGTACCCCGAAAACA+AGG | 0.639552 | 5.2:-3018857 | None:intergenic |
GCATCCACATTTGGTACAGG+AGG | 0.639658 | 5.2:-3018754 | None:intergenic |
GTGGACTTCAATTCTCTCTG+TGG | 0.641098 | 5.2:+3019931 | MS.gene21662:CDS |
GTACTTGATAGAGTGTACTC+AGG | 0.645216 | 5.2:+3016474 | MS.gene21662:CDS |
TGATAGTATTTGAGCAACTG+AGG | 0.646048 | 5.2:-3020557 | None:intergenic |
ACGGAAGATAAACCTTCAAG+AGG | 0.646702 | 5.2:+3009488 | MS.gene21662:CDS |
AAATGCATTTCTCAGGCACG+GGG | 0.650215 | 5.2:-3021098 | None:intergenic |
GGAACTACTGGTGACCCCAA+GGG | 0.650731 | 5.2:+3015828 | MS.gene21662:CDS |
TCCCAGCAACTATCAAGACC+AGG | 0.653688 | 5.2:-3009560 | None:intergenic |
CAACAGGGGACATTGGAGAG+TGG | 0.654967 | 5.2:+3019029 | MS.gene21662:intron |
ATGGTGCCAATTCTGCAGAG+TGG | 0.660085 | 5.2:+3012642 | MS.gene21662:CDS |
GTTCCATATCAAATGGAACT+GGG | 0.663113 | 5.2:-3020499 | None:intergenic |
GTAGCCGAGAGATTGTGGAC+GGG | 0.663330 | 5.2:+3010293 | MS.gene21662:CDS |
ATGCAATTGAGACCTCTGCA+TGG | 0.666854 | 5.2:-3014966 | None:intergenic |
TGGGGTTAACAACAGCAACA+AGG | 0.674167 | 5.2:-3019864 | None:intergenic |
GAGACATTTATATGGCATGG+TGG | 0.693735 | 5.2:+3016222 | MS.gene21662:CDS |
TGTACAATAATGTATACTAG+CGG | 0.700165 | 5.2:+3015807 | MS.gene21662:CDS |
CTTCTCCATAACCACAGCTG+CGG | 0.713750 | 5.2:-3010505 | None:intergenic |
TGGATATCAATACTCCCTTG+GGG | 0.718015 | 5.2:-3015842 | None:intergenic |
GGTTTGCAGGGTGTAAAATG+TGG | 0.719983 | 5.2:+3012614 | MS.gene21662:intron |
TTACAAAGAAGTATATGACA+TGG | 0.723910 | 5.2:+3010460 | MS.gene21662:CDS |
AGAAGAAAAGAAGATACCTG+AGG | 0.728782 | 5.2:+3014993 | MS.gene21662:CDS |
TACACTCTATCAAGTACACG+AGG | 0.731549 | 5.2:-3016468 | None:intergenic |
AGAGTGGATTATGAGCATGG+AGG | 0.803600 | 5.2:+3012658 | MS.gene21662:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 3009440 | 3021109 | 3009440 | ID=MS.gene21662 |
chr5.2 | mRNA | 3009440 | 3021109 | 3009440 | ID=MS.gene21662.t1;Parent=MS.gene21662 |
chr5.2 | exon | 3009440 | 3009583 | 3009440 | ID=MS.gene21662.t1.exon1;Parent=MS.gene21662.t1 |
chr5.2 | CDS | 3009440 | 3009583 | 3009440 | ID=cds.MS.gene21662.t1;Parent=MS.gene21662.t1 |
chr5.2 | exon | 3010244 | 3010318 | 3010244 | ID=MS.gene21662.t1.exon2;Parent=MS.gene21662.t1 |
chr5.2 | CDS | 3010244 | 3010318 | 3010244 | ID=cds.MS.gene21662.t1;Parent=MS.gene21662.t1 |
chr5.2 | exon | 3010437 | 3010526 | 3010437 | ID=MS.gene21662.t1.exon3;Parent=MS.gene21662.t1 |
chr5.2 | CDS | 3010437 | 3010526 | 3010437 | ID=cds.MS.gene21662.t1;Parent=MS.gene21662.t1 |
chr5.2 | exon | 3012623 | 3012679 | 3012623 | ID=MS.gene21662.t1.exon4;Parent=MS.gene21662.t1 |
chr5.2 | CDS | 3012623 | 3012679 | 3012623 | ID=cds.MS.gene21662.t1;Parent=MS.gene21662.t1 |
chr5.2 | exon | 3013820 | 3013868 | 3013820 | ID=MS.gene21662.t1.exon5;Parent=MS.gene21662.t1 |
chr5.2 | CDS | 3013820 | 3013868 | 3013820 | ID=cds.MS.gene21662.t1;Parent=MS.gene21662.t1 |
chr5.2 | exon | 3014938 | 3015014 | 3014938 | ID=MS.gene21662.t1.exon6;Parent=MS.gene21662.t1 |
chr5.2 | CDS | 3014938 | 3015014 | 3014938 | ID=cds.MS.gene21662.t1;Parent=MS.gene21662.t1 |
chr5.2 | exon | 3015135 | 3015174 | 3015135 | ID=MS.gene21662.t1.exon7;Parent=MS.gene21662.t1 |
chr5.2 | CDS | 3015135 | 3015174 | 3015135 | ID=cds.MS.gene21662.t1;Parent=MS.gene21662.t1 |
chr5.2 | exon | 3015257 | 3015351 | 3015257 | ID=MS.gene21662.t1.exon8;Parent=MS.gene21662.t1 |
chr5.2 | CDS | 3015257 | 3015351 | 3015257 | ID=cds.MS.gene21662.t1;Parent=MS.gene21662.t1 |
chr5.2 | exon | 3015759 | 3015926 | 3015759 | ID=MS.gene21662.t1.exon9;Parent=MS.gene21662.t1 |
chr5.2 | CDS | 3015759 | 3015926 | 3015759 | ID=cds.MS.gene21662.t1;Parent=MS.gene21662.t1 |
chr5.2 | exon | 3016156 | 3016266 | 3016156 | ID=MS.gene21662.t1.exon10;Parent=MS.gene21662.t1 |
chr5.2 | CDS | 3016156 | 3016266 | 3016156 | ID=cds.MS.gene21662.t1;Parent=MS.gene21662.t1 |
chr5.2 | exon | 3016408 | 3016495 | 3016408 | ID=MS.gene21662.t1.exon11;Parent=MS.gene21662.t1 |
chr5.2 | CDS | 3016408 | 3016495 | 3016408 | ID=cds.MS.gene21662.t1;Parent=MS.gene21662.t1 |
chr5.2 | exon | 3018683 | 3018928 | 3018683 | ID=MS.gene21662.t1.exon12;Parent=MS.gene21662.t1 |
chr5.2 | CDS | 3018683 | 3018928 | 3018683 | ID=cds.MS.gene21662.t1;Parent=MS.gene21662.t1 |
chr5.2 | exon | 3019035 | 3019174 | 3019035 | ID=MS.gene21662.t1.exon13;Parent=MS.gene21662.t1 |
chr5.2 | CDS | 3019035 | 3019174 | 3019035 | ID=cds.MS.gene21662.t1;Parent=MS.gene21662.t1 |
chr5.2 | exon | 3019832 | 3020014 | 3019832 | ID=MS.gene21662.t1.exon14;Parent=MS.gene21662.t1 |
chr5.2 | CDS | 3019832 | 3020014 | 3019832 | ID=cds.MS.gene21662.t1;Parent=MS.gene21662.t1 |
chr5.2 | exon | 3020461 | 3020580 | 3020461 | ID=MS.gene21662.t1.exon15;Parent=MS.gene21662.t1 |
chr5.2 | CDS | 3020461 | 3020580 | 3020461 | ID=cds.MS.gene21662.t1;Parent=MS.gene21662.t1 |
chr5.2 | exon | 3021062 | 3021109 | 3021062 | ID=MS.gene21662.t1.exon16;Parent=MS.gene21662.t1 |
chr5.2 | CDS | 3021062 | 3021109 | 3021062 | ID=cds.MS.gene21662.t1;Parent=MS.gene21662.t1 |
Gene Sequence |
Protein sequence |