Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55400.t1 | XP_003614051.1 | 99.6 | 258 | 1 | 0 | 1 | 258 | 1 | 258 | 6.30E-136 | 493.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55400.t1 | Q9C5W6 | 86.1 | 251 | 35 | 0 | 3 | 253 | 6 | 256 | 1.2e-116 | 420.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55400.t1 | G7JWT4 | 99.6 | 258 | 1 | 0 | 1 | 258 | 1 | 258 | 4.5e-136 | 493.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050875 | MS.gene55400 | 0.804055 | 2.60E-49 | -1.69E-46 |
| MS.gene051914 | MS.gene55400 | 0.823339 | 1.46E-53 | -1.69E-46 |
| MS.gene054018 | MS.gene55400 | 0.822648 | 2.12E-53 | -1.69E-46 |
| MS.gene054662 | MS.gene55400 | 0.922195 | 1.35E-88 | -1.69E-46 |
| MS.gene057367 | MS.gene55400 | 0.80438 | 2.22E-49 | -1.69E-46 |
| MS.gene06093 | MS.gene55400 | 0.825802 | 3.84E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55400 | MS.gene043907 | PPI |
| MS.gene55400 | MS.gene050079 | PPI |
| MS.gene55400 | MS.gene38593 | PPI |
| MS.gene55400 | MS.gene020411 | PPI |
| MS.gene55400 | MS.gene48435 | PPI |
| MS.gene55400 | MS.gene010179 | PPI |
| MS.gene55400 | MS.gene055488 | PPI |
| MS.gene55400 | MS.gene010180 | PPI |
| MS.gene55400 | MS.gene028807 | PPI |
| MS.gene55400 | MS.gene013047 | PPI |
| MS.gene55400 | MS.gene54847 | PPI |
| MS.gene55400 | MS.gene035837 | PPI |
| MS.gene55400 | MS.gene043514 | PPI |
| MS.gene55400 | MS.gene052176 | PPI |
| MS.gene55400 | MS.gene31370 | PPI |
| MS.gene55400 | MS.gene013133 | PPI |
| MS.gene55400 | MS.gene64150 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55400.t1 | MTR_5g044160 | 99.612 | 258 | 1 | 0 | 1 | 258 | 1 | 258 | 0.0 | 529 |
| MS.gene55400.t1 | MTR_4g083060 | 89.147 | 258 | 27 | 1 | 1 | 258 | 1 | 257 | 6.25e-174 | 480 |
| MS.gene55400.t1 | MTR_2g091225 | 75.502 | 249 | 60 | 1 | 1 | 249 | 1 | 248 | 2.09e-142 | 400 |
| MS.gene55400.t1 | MTR_8g086270 | 76.735 | 245 | 57 | 0 | 1 | 245 | 1 | 245 | 2.39e-141 | 397 |
| MS.gene55400.t1 | MTR_2g076960 | 73.790 | 248 | 65 | 0 | 2 | 249 | 3 | 250 | 1.67e-138 | 390 |
| MS.gene55400.t1 | MTR_2g015980 | 74.897 | 243 | 59 | 2 | 11 | 253 | 9 | 249 | 2.96e-135 | 382 |
| MS.gene55400.t1 | MTR_2g091225 | 76.000 | 225 | 53 | 1 | 25 | 249 | 2 | 225 | 2.44e-129 | 366 |
| MS.gene55400.t1 | MTR_3g099380 | 70.817 | 257 | 72 | 3 | 2 | 256 | 3 | 258 | 2.42e-127 | 362 |
| MS.gene55400.t1 | MTR_5g064580 | 68.627 | 255 | 75 | 2 | 2 | 254 | 3 | 254 | 5.44e-124 | 353 |
| MS.gene55400.t1 | MTR_3g100620 | 66.809 | 235 | 75 | 1 | 7 | 238 | 11 | 245 | 2.08e-113 | 326 |
| MS.gene55400.t1 | MTR_3g099380 | 68.657 | 201 | 61 | 2 | 2 | 200 | 3 | 203 | 2.77e-95 | 278 |
| MS.gene55400.t1 | MTR_0137s0020 | 52.542 | 236 | 102 | 5 | 7 | 237 | 11 | 241 | 4.30e-74 | 226 |
| MS.gene55400.t1 | MTR_3g014060 | 52.119 | 236 | 103 | 5 | 7 | 237 | 11 | 241 | 2.80e-73 | 224 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55400.t1 | AT1G26480 | 84.231 | 260 | 36 | 1 | 2 | 256 | 5 | 264 | 1.47e-162 | 451 |
| MS.gene55400.t1 | AT1G34760 | 79.835 | 243 | 48 | 1 | 4 | 246 | 2 | 243 | 1.07e-143 | 403 |
| MS.gene55400.t1 | AT1G34760 | 79.835 | 243 | 48 | 1 | 4 | 246 | 2 | 243 | 1.07e-143 | 403 |
| MS.gene55400.t1 | AT2G42590 | 74.219 | 256 | 65 | 1 | 1 | 255 | 1 | 256 | 5.00e-141 | 397 |
| MS.gene55400.t1 | AT2G42590 | 74.219 | 256 | 65 | 1 | 1 | 255 | 1 | 256 | 6.49e-141 | 396 |
| MS.gene55400.t1 | AT2G42590 | 73.725 | 255 | 67 | 0 | 1 | 255 | 1 | 255 | 1.50e-139 | 393 |
| MS.gene55400.t1 | AT1G22300 | 74.400 | 250 | 64 | 0 | 4 | 253 | 2 | 251 | 3.36e-135 | 381 |
| MS.gene55400.t1 | AT1G22300 | 74.400 | 250 | 64 | 0 | 4 | 253 | 2 | 251 | 3.54e-135 | 381 |
| MS.gene55400.t1 | AT1G22300 | 76.250 | 240 | 57 | 0 | 4 | 243 | 2 | 241 | 8.81e-134 | 378 |
| MS.gene55400.t1 | AT1G35160 | 72.619 | 252 | 67 | 2 | 7 | 256 | 11 | 262 | 1.70e-127 | 362 |
| MS.gene55400.t1 | AT3G02520 | 71.705 | 258 | 65 | 3 | 7 | 256 | 5 | 262 | 3.02e-127 | 362 |
| MS.gene55400.t1 | AT3G02520 | 71.705 | 258 | 65 | 3 | 7 | 256 | 5 | 262 | 3.02e-127 | 362 |
| MS.gene55400.t1 | AT5G38480 | 71.429 | 252 | 70 | 2 | 7 | 256 | 4 | 255 | 4.99e-127 | 361 |
| MS.gene55400.t1 | AT1G78300 | 70.635 | 252 | 72 | 2 | 7 | 256 | 5 | 256 | 1.22e-125 | 357 |
| MS.gene55400.t1 | AT5G38480 | 72.800 | 250 | 63 | 4 | 7 | 254 | 4 | 250 | 1.93e-125 | 357 |
| MS.gene55400.t1 | AT5G38480 | 72.800 | 250 | 63 | 4 | 7 | 254 | 4 | 250 | 1.93e-125 | 357 |
| MS.gene55400.t1 | AT4G09000 | 71.138 | 246 | 69 | 2 | 2 | 245 | 5 | 250 | 4.34e-124 | 353 |
| MS.gene55400.t1 | AT1G35160 | 75.214 | 234 | 56 | 2 | 7 | 238 | 11 | 244 | 2.14e-123 | 353 |
| MS.gene55400.t1 | AT4G09000 | 73.109 | 238 | 62 | 2 | 3 | 238 | 6 | 243 | 1.18e-121 | 349 |
| MS.gene55400.t1 | AT5G16050 | 66.288 | 264 | 79 | 2 | 1 | 254 | 1 | 264 | 2.88e-120 | 344 |
| MS.gene55400.t1 | AT5G16050 | 66.288 | 264 | 79 | 2 | 1 | 254 | 1 | 264 | 2.88e-120 | 344 |
| MS.gene55400.t1 | AT5G65430 | 66.397 | 247 | 80 | 1 | 1 | 244 | 1 | 247 | 1.68e-115 | 331 |
| MS.gene55400.t1 | AT5G65430 | 66.803 | 244 | 78 | 1 | 1 | 241 | 1 | 244 | 2.27e-115 | 331 |
| MS.gene55400.t1 | AT5G65430 | 67.220 | 241 | 76 | 1 | 1 | 238 | 1 | 241 | 3.96e-114 | 328 |
| MS.gene55400.t1 | AT5G10450 | 64.754 | 244 | 83 | 1 | 1 | 241 | 1 | 244 | 3.16e-113 | 325 |
| MS.gene55400.t1 | AT5G10450 | 65.021 | 243 | 82 | 1 | 1 | 240 | 1 | 243 | 3.31e-113 | 325 |
| MS.gene55400.t1 | AT5G10450 | 65.145 | 241 | 81 | 1 | 1 | 238 | 1 | 241 | 1.74e-112 | 324 |
| MS.gene55400.t1 | AT5G10450 | 65.145 | 241 | 81 | 1 | 1 | 238 | 1 | 241 | 4.50e-112 | 323 |
| MS.gene55400.t1 | AT1G78220 | 51.709 | 234 | 112 | 1 | 4 | 236 | 2 | 235 | 3.67e-83 | 249 |
| MS.gene55400.t1 | AT1G22290 | 49.537 | 216 | 85 | 5 | 4 | 214 | 2 | 198 | 6.22e-60 | 189 |
| MS.gene55400.t1 | AT1G22290 | 49.296 | 213 | 84 | 5 | 4 | 211 | 2 | 195 | 2.02e-59 | 187 |
| MS.gene55400.t1 | AT2G10450 | 59.574 | 47 | 19 | 0 | 204 | 250 | 16 | 62 | 2.22e-12 | 61.6 |
Find 60 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCGATTGCTTACCTTTC+AGG | 0.105745 | 5.2:-34498898 | None:intergenic |
| CAGAATATCACCACAGATTT+TGG | 0.109197 | 5.2:-34497824 | None:intergenic |
| TGAGCAGAAGGAGGAGTCTA+AGG | 0.249783 | 5.2:+34497741 | MS.gene55400:CDS |
| GCAGGAAAGGGGATTATTTC+CGG | 0.289859 | 5.2:+34498603 | MS.gene55400:intron |
| CGCCTCATCAAAAGCTTGTT+TGG | 0.319773 | 5.2:-34499006 | None:intergenic |
| TACCTCAGGCTCAGCGGGTT+TGG | 0.338393 | 5.2:-34499663 | None:intergenic |
| AGAGTTCCTCCTCAACCTTT+TGG | 0.345006 | 5.2:-34497801 | None:intergenic |
| CAAAAGCTTGTTTGGCCAAA+TGG | 0.349323 | 5.2:-34498998 | None:intergenic |
| AACTTACAGGGCCTGCCATT+TGG | 0.370260 | 5.2:+34498983 | MS.gene55400:intron |
| TTCATATCTTTCAGCTTGTT+CGG | 0.370539 | 5.2:-34496792 | None:intergenic |
| GAGAGAGACCCAAGTTTACT+TGG | 0.378465 | 5.2:+34496760 | MS.gene55400:CDS |
| GACAATTATTGACCAGCATC+TGG | 0.387445 | 5.2:+34497846 | MS.gene55400:CDS |
| AATCAGAGGTCCAGAGAGTC+AGG | 0.404705 | 5.2:-34499103 | None:intergenic |
| AAAGCTTGGCCAAGTAAACT+TGG | 0.423724 | 5.2:-34496769 | None:intergenic |
| TTCAGCTTGTTCGGAAAGCT+TGG | 0.436972 | 5.2:-34496783 | None:intergenic |
| TGAGAGACAACCTGACTCTC+TGG | 0.448857 | 5.2:+34499093 | MS.gene55400:CDS |
| AGCTTGTTTGGCCAAATGGC+AGG | 0.464126 | 5.2:-34498994 | None:intergenic |
| TGATGAGGCGATTGCAGAGT+TGG | 0.469932 | 5.2:+34499019 | MS.gene55400:CDS |
| AGACGGATTGGATGTGTTGA+TGG | 0.480349 | 5.2:-34498826 | None:intergenic |
| GCTTCTGCCGAGGTGGAAGC+AGG | 0.494681 | 5.2:-34497871 | None:intergenic |
| ATACATACCTCAGGCTCAGC+GGG | 0.501637 | 5.2:-34499668 | None:intergenic |
| ACCTCTGATTTGCCAGAGGA+TGG | 0.501755 | 5.2:+34499116 | MS.gene55400:CDS |
| GATCAAGAGTTACTGCCAAA+AGG | 0.518570 | 5.2:+34497786 | MS.gene55400:CDS |
| GAACAAGCTGAAAGATATGA+AGG | 0.522838 | 5.2:+34496794 | MS.gene55400:CDS |
| TCTTGAACTCAGCAAGATAC+CGG | 0.525675 | 5.2:-34498622 | None:intergenic |
| TTGGTGCACGAAGAGCTTCA+TGG | 0.527662 | 5.2:+34497701 | MS.gene55400:CDS |
| CTCCTCCTTCTGCTCAATTG+AGG | 0.527914 | 5.2:-34497734 | None:intergenic |
| GAGTTACTGCCAAAAGGTTG+AGG | 0.532495 | 5.2:+34497792 | MS.gene55400:CDS |
| TATCCCTTACCTCCATCCTC+TGG | 0.533069 | 5.2:-34499128 | None:intergenic |
| TGGAAGCAGGAACCAGATGC+TGG | 0.540094 | 5.2:-34497858 | None:intergenic |
| TCAACACATCCAATCCGTCT+TGG | 0.541520 | 5.2:+34498829 | MS.gene55400:CDS |
| GAGAGGAACCTCCTCTCAGT+TGG | 0.543164 | 5.2:+34497664 | MS.gene55400:CDS |
| AGTGCAAGTCCAAGACGGAT+TGG | 0.548630 | 5.2:-34498838 | None:intergenic |
| AAGATCAGTGTTTGCAGTGG+CGG | 0.557206 | 5.2:-34498803 | None:intergenic |
| GACTGACCAAGAGAGAAAAG+AGG | 0.559564 | 5.2:+34498643 | MS.gene55400:CDS |
| TATGTCCTCAATTGAGCAGA+AGG | 0.567548 | 5.2:+34497729 | MS.gene55400:CDS |
| AACATTAGCTTCTGCCGAGG+TGG | 0.575120 | 5.2:-34497878 | None:intergenic |
| AGCCAAACCCGCTGAGCCTG+AGG | 0.586083 | 5.2:+34499661 | MS.gene55400:CDS |
| CTTGAGTGAAGAGTCGTACA+AGG | 0.586539 | 5.2:+34499046 | MS.gene55400:CDS |
| TTGAACTAACTGTGGAAGAG+AGG | 0.589747 | 5.2:+34497647 | MS.gene55400:CDS |
| GAGCAGAAGGAGGAGTCTAA+GGG | 0.589752 | 5.2:+34497742 | MS.gene55400:CDS |
| CTGGACCTCTGATTTGCCAG+AGG | 0.595427 | 5.2:+34499112 | MS.gene55400:CDS |
| GGTTGAATGTATGAAGAAAG+TGG | 0.595766 | 5.2:+34497612 | MS.gene55400:CDS |
| GCTGCTGAGCAGTCACTGAA+AGG | 0.600437 | 5.2:+34498665 | MS.gene55400:CDS |
| AGATTATGAACTCTCCTGAA+AGG | 0.605075 | 5.2:+34498884 | MS.gene55400:CDS |
| CTTGTACGACTCTTCACTCA+AGG | 0.608037 | 5.2:-34499045 | None:intergenic |
| AAGCTTGGCCAAGTAAACTT+GGG | 0.611139 | 5.2:-34496768 | None:intergenic |
| TCCATCCTCTGGCAAATCAG+AGG | 0.621846 | 5.2:-34499117 | None:intergenic |
| GAGGAACTCTCCAAAATCTG+TGG | 0.639940 | 5.2:+34497814 | MS.gene55400:CDS |
| TCTGATTTGCCAGAGGATGG+AGG | 0.645454 | 5.2:+34499119 | MS.gene55400:CDS |
| ACTTGATGTTGAACTAACTG+TGG | 0.647498 | 5.2:+34497639 | MS.gene55400:CDS |
| TTACTGCCAAAAGGTTGAGG+AGG | 0.652188 | 5.2:+34497795 | MS.gene55400:CDS |
| AGTTGAGTGCAAGTCCAAGA+CGG | 0.652366 | 5.2:-34498843 | None:intergenic |
| GTCCTCAATTGAGCAGAAGG+AGG | 0.654997 | 5.2:+34497732 | MS.gene55400:CDS |
| GGTCTCTCTCTCTTTCTCAG+CGG | 0.674609 | 5.2:-34496747 | None:intergenic |
| GAAAACATTAGCTTCTGCCG+AGG | 0.676043 | 5.2:-34497881 | None:intergenic |
| TCTGGTTCCTGCTTCCACCT+CGG | 0.676873 | 5.2:+34497864 | MS.gene55400:CDS |
| TATACATACCTCAGGCTCAG+CGG | 0.690490 | 5.2:-34499669 | None:intergenic |
| TGGAAGATCAGTGTTTGCAG+TGG | 0.713574 | 5.2:-34498806 | None:intergenic |
| GCAGTCACTGAAAGGATACG+AGG | 0.737880 | 5.2:+34498673 | MS.gene55400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTGCTTTTAAAAATTA+GGG | + | chr5.2:34499207-34499226 | MS.gene55400:intron | 10.0% |
| !! | AAAAATTACGTGTTTAATAA+TGG | - | chr5.2:34497465-34497484 | None:intergenic | 15.0% |
| !! | AAAATAATATGTCTACTAAA+AGG | - | chr5.2:34498029-34498048 | None:intergenic | 15.0% |
| !! | AATATGTTATCTAAAAATGT+TGG | + | chr5.2:34497208-34497227 | MS.gene55400:intron | 15.0% |
| !! | TGTACATTCATAATAAATTA+TGG | + | chr5.2:34497257-34497276 | MS.gene55400:intron | 15.0% |
| !!! | AAAGATTTGATTTTTTGATT+TGG | + | chr5.2:34496938-34496957 | MS.gene55400:intron | 15.0% |
| !!! | AAGATTTGATTTTTTGATTT+GGG | + | chr5.2:34496939-34496958 | MS.gene55400:intron | 15.0% |
| !!! | AATTTTTAAAAGCAAAAAAC+TGG | - | chr5.2:34499206-34499225 | None:intergenic | 15.0% |
| !!! | CATTAATAAATTATTTCTGA+TGG | + | chr5.2:34498721-34498740 | MS.gene55400:intron | 15.0% |
| !!! | GTTTTTTGCTTTTAAAAATT+AGG | + | chr5.2:34499206-34499225 | MS.gene55400:intron | 15.0% |
| !!! | TTTTATTTTAATTTTGAAGG+TGG | + | chr5.2:34497029-34497048 | MS.gene55400:intron | 15.0% |
| !! | AAAGTATAGGTATATATTGT+TGG | + | chr5.2:34499285-34499304 | MS.gene55400:intron | 20.0% |
| !! | AAGTATAGGTATATATTGTT+GGG | + | chr5.2:34499286-34499305 | MS.gene55400:intron | 20.0% |
| !! | AGATATAGATACTACATTAT+AGG | + | chr5.2:34498291-34498310 | MS.gene55400:intron | 20.0% |
| !! | ATAATAAATTATGGATGTGT+TGG | + | chr5.2:34497266-34497285 | MS.gene55400:intron | 20.0% |
| !! | ATCTTCTAAATTGAGAAATT+TGG | + | chr5.2:34497182-34497201 | MS.gene55400:intron | 20.0% |
| !! | ATTGAACAATTCACTTTAAA+AGG | - | chr5.2:34497339-34497358 | None:intergenic | 20.0% |
| !!! | AAATTATACAGTTTTCAACA+TGG | - | chr5.2:34497541-34497560 | None:intergenic | 20.0% |
| !!! | CTTTGAATTCTAGTTAATTA+TGG | + | chr5.2:34498263-34498282 | MS.gene55400:intron | 20.0% |
| !!! | GTAATTAAGCTTTTGTTATT+TGG | + | chr5.2:34499551-34499570 | MS.gene55400:intron | 20.0% |
| !!! | TGTTATTTTTTAATGGGTTT+GGG | + | chr5.2:34496832-34496851 | MS.gene55400:intron | 20.0% |
| !!! | TTGTTATTTTTTAATGGGTT+TGG | + | chr5.2:34496831-34496850 | MS.gene55400:intron | 20.0% |
| ! | AAAATAAGCATAAGGAAATC+AGG | - | chr5.2:34498580-34498599 | None:intergenic | 25.0% |
| ! | AAATAAGCATAAGGAAATCA+GGG | - | chr5.2:34498579-34498598 | None:intergenic | 25.0% |
| ! | AAGAGATTTCATATCACATA+AGG | - | chr5.2:34498527-34498546 | None:intergenic | 25.0% |
| ! | AGTTAGGAGTTTAATAAACA+AGG | - | chr5.2:34498373-34498392 | None:intergenic | 25.0% |
| ! | ATCAAATCAAACAAGTAACA+CGG | - | chr5.2:34497143-34497162 | None:intergenic | 25.0% |
| ! | ATGTATTCAATATGCAGAAA+TGG | + | chr5.2:34497591-34497610 | MS.gene55400:intron | 25.0% |
| ! | ATTAAAAATCTTGGATCTCA+GGG | - | chr5.2:34499241-34499260 | None:intergenic | 25.0% |
| ! | CATTATAGGTTATAGATTAC+AGG | + | chr5.2:34498305-34498324 | MS.gene55400:intron | 25.0% |
| ! | GCTTAATTACACAATTAACT+AGG | - | chr5.2:34499541-34499560 | None:intergenic | 25.0% |
| ! | GTTAGGAGTTTAATAAACAA+GGG | - | chr5.2:34498372-34498391 | None:intergenic | 25.0% |
| ! | GTTTCTATCTATTGTCTAAA+TGG | + | chr5.2:34498951-34498970 | MS.gene55400:intron | 25.0% |
| !! | AGATCAATCATTTTCTAGAT+TGG | + | chr5.2:34496979-34496998 | MS.gene55400:intron | 25.0% |
| !!! | CTGTTTTTTTGTTGTGATTT+GGG | + | chr5.2:34496892-34496911 | MS.gene55400:intron | 25.0% |
| !!! | TCACAACTGTTTTGATTATT+AGG | + | chr5.2:34498774-34498793 | MS.gene55400:intron | 25.0% |
| !!! | TCTGTTTTTTTGTTGTGATT+TGG | + | chr5.2:34496891-34496910 | MS.gene55400:intron | 25.0% |
| !!! | TTTGATTTGATGCTTAGATT+AGG | + | chr5.2:34497152-34497171 | MS.gene55400:intron | 25.0% |
| AAACATAGAATCTGTATGAC+TGG | + | chr5.2:34498078-34498097 | MS.gene55400:intron | 30.0% | |
| AAAGGTTAATACTCTCTTAC+AGG | + | chr5.2:34499614-34499633 | MS.gene55400:intron | 30.0% | |
| AAATTAATCTTCCCCTGATA+CGG | - | chr5.2:34497489-34497508 | None:intergenic | 30.0% | |
| ACAACAGTAATGACTAATGA+TGG | + | chr5.2:34497377-34497396 | MS.gene55400:intron | 30.0% | |
| ACCTATACTTTCAATGTGTT+TGG | - | chr5.2:34499276-34499295 | None:intergenic | 30.0% | |
| AGTAGGACTTAATCATGAAA+CGG | - | chr5.2:34498165-34498184 | None:intergenic | 30.0% | |
| ATAGGTATATATTGTTGGGT+AGG | + | chr5.2:34499290-34499309 | MS.gene55400:intron | 30.0% | |
| ATGATAAGGACTACGAAATA+TGG | + | chr5.2:34498415-34498434 | MS.gene55400:intron | 30.0% | |
| ATTTATCGCTATCTTCGTTA+TGG | + | chr5.2:34497992-34498011 | MS.gene55400:intron | 30.0% | |
| CAACAGTAATGACTAATGAT+GGG | + | chr5.2:34497378-34497397 | MS.gene55400:intron | 30.0% | |
| GATTAAAAATCTTGGATCTC+AGG | - | chr5.2:34499242-34499261 | None:intergenic | 30.0% | |
| GTTGGATATAAAAACGTCAT+TGG | + | chr5.2:34497682-34497701 | MS.gene55400:CDS | 30.0% | |
| TACTTTCAATGTGTTTGGTT+TGG | - | chr5.2:34499271-34499290 | None:intergenic | 30.0% | |
| TATAGGGTTTCAGATAAAGA+TGG | + | chr5.2:34498228-34498247 | MS.gene55400:intron | 30.0% | |
| TATATTCCGCTCAAGTTATA+GGG | + | chr5.2:34498212-34498231 | MS.gene55400:intron | 30.0% | |
| TCTATCTATTGTCTAAATGG+TGG | + | chr5.2:34498954-34498973 | MS.gene55400:intron | 30.0% | |
| TGGATAATTTATCCAATAGC+AGG | - | chr5.2:34499467-34499486 | None:intergenic | 30.0% | |
| TGTGATATGAAATCTCTTTC+TGG | + | chr5.2:34498529-34498548 | MS.gene55400:intron | 30.0% | |
| TTATATTCCGCTCAAGTTAT+AGG | + | chr5.2:34498211-34498230 | MS.gene55400:intron | 30.0% | |
| ! | ACAATATGACTATGGTTTTC+TGG | - | chr5.2:34499487-34499506 | None:intergenic | 30.0% |
| ! | ACCAAACACATTGAAAGTAT+AGG | + | chr5.2:34499272-34499291 | MS.gene55400:intron | 30.0% |
| ! | ACGTAATTTTTACCGTATCA+GGG | + | chr5.2:34497474-34497493 | MS.gene55400:intron | 30.0% |
| ! | GAGATCCAAGATTTTTAATC+TGG | + | chr5.2:34499242-34499261 | MS.gene55400:intron | 30.0% |
| ! | TTATTGATGTGTCATTGTGT+TGG | + | chr5.2:34497113-34497132 | MS.gene55400:intron | 30.0% |
| ! | TTCACTGTTAGATTCTAGTT+AGG | - | chr5.2:34498389-34498408 | None:intergenic | 30.0% |
| ! | TTCATATCTTTCAGCTTGTT+CGG | - | chr5.2:34496795-34496814 | None:intergenic | 30.0% |
| !! | TTACGTGTTTAATAATGGAC+TGG | - | chr5.2:34497460-34497479 | None:intergenic | 30.0% |
| !!! | CCTAATTTTTTGACAAGGTT+GGG | - | chr5.2:34499420-34499439 | None:intergenic | 30.0% |
| !!! | CTAATTTTTTGACAAGGTTG+GGG | - | chr5.2:34499419-34499438 | None:intergenic | 30.0% |
| !!! | CTCATCCTAATTTTTTGACA+AGG | - | chr5.2:34499425-34499444 | None:intergenic | 30.0% |
| !!! | TCCTAATTTTTTGACAAGGT+TGG | - | chr5.2:34499421-34499440 | None:intergenic | 30.0% |
| AATTTCAACGACGCAATCAA+AGG | - | chr5.2:34497300-34497319 | None:intergenic | 35.0% | |
| ACAGTGAAGAACTCATGATA+AGG | + | chr5.2:34498401-34498420 | MS.gene55400:intron | 35.0% | |
| ACTTGATGTTGAACTAACTG+TGG | + | chr5.2:34497639-34497658 | MS.gene55400:CDS | 35.0% | |
| AGATTATGAACTCTCCTGAA+AGG | + | chr5.2:34498884-34498903 | MS.gene55400:CDS | 35.0% | |
| AGGTGGATAACAAATATGCA+AGG | - | chr5.2:34498129-34498148 | None:intergenic | 35.0% | |
| ATTTCAACGACGCAATCAAA+GGG | - | chr5.2:34497299-34497318 | None:intergenic | 35.0% | |
| CAAAAAACTGGAGATCTTGA+AGG | - | chr5.2:34499194-34499213 | None:intergenic | 35.0% | |
| CCCAACCTTGTCAAAAAATT+AGG | + | chr5.2:34499417-34499436 | MS.gene55400:intron | 35.0% | |
| CCTGCATCAAAATAAGCATA+AGG | - | chr5.2:34498588-34498607 | None:intergenic | 35.0% | |
| GAACAAGCTGAAAGATATGA+AGG | + | chr5.2:34496794-34496813 | MS.gene55400:CDS | 35.0% | |
| GAAGATAGCGATAAATCTGA+TGG | - | chr5.2:34497988-34498007 | None:intergenic | 35.0% | |
| GGCATCCAGATTAAAAATCT+TGG | - | chr5.2:34499250-34499269 | None:intergenic | 35.0% | |
| GGTTGAATGTATGAAGAAAG+TGG | + | chr5.2:34497612-34497631 | MS.gene55400:CDS | 35.0% | |
| GTAGGACTTAATCATGAAAC+GGG | - | chr5.2:34498164-34498183 | None:intergenic | 35.0% | |
| GTATATATTGTTGGGTAGGT+TGG | + | chr5.2:34499294-34499313 | MS.gene55400:intron | 35.0% | |
| GTGATGTTATAGACCCAAAT+TGG | + | chr5.2:34497434-34497453 | MS.gene55400:intron | 35.0% | |
| TCCAATGACTCATTCATAGT+AGG | - | chr5.2:34498182-34498201 | None:intergenic | 35.0% | |
| TCCTACTATGAATGAGTCAT+TGG | + | chr5.2:34498178-34498197 | MS.gene55400:intron | 35.0% | |
| TGATGCTTAGATTAGGAAAC+TGG | + | chr5.2:34497159-34497178 | MS.gene55400:intron | 35.0% | |
| TTAATACTCTCTTACAGGTG+AGG | + | chr5.2:34499619-34499638 | MS.gene55400:intron | 35.0% | |
| TTGGGTCTATAACATCACTT+TGG | - | chr5.2:34497432-34497451 | None:intergenic | 35.0% | |
| ! | ATGGTGGTGATAAAACTTAC+AGG | + | chr5.2:34498970-34498989 | MS.gene55400:intron | 35.0% |
| ! | CACGTAATTTTTACCGTATC+AGG | + | chr5.2:34497473-34497492 | MS.gene55400:intron | 35.0% |
| ! | CAGAATATCACCACAGATTT+TGG | - | chr5.2:34497827-34497846 | None:intergenic | 35.0% |
| ! | CGTAATTTTTACCGTATCAG+GGG | + | chr5.2:34497475-34497494 | MS.gene55400:intron | 35.0% |
| ! | CGTTTTTATATCCAACTGAG+AGG | - | chr5.2:34497678-34497697 | None:intergenic | 35.0% |
| ! | CTAATGATGGGAATTATGCT+TGG | + | chr5.2:34497390-34497409 | MS.gene55400:intron | 35.0% |
| ! | CTCTGGAAACAATATGACTA+TGG | - | chr5.2:34499495-34499514 | None:intergenic | 35.0% |
| ! | TCCTACTAAAGAGGTTCTAA+AGG | + | chr5.2:34499596-34499615 | MS.gene55400:intron | 35.0% |
| ! | TGGTGGTGATAAAACTTACA+GGG | + | chr5.2:34498971-34498990 | MS.gene55400:intron | 35.0% |
| ! | TTTTATATCCAACTGAGAGG+AGG | - | chr5.2:34497675-34497694 | None:intergenic | 35.0% |
| !! | AATAATGGACTGGCCAATTT+GGG | - | chr5.2:34497450-34497469 | None:intergenic | 35.0% |
| !! | ACCTTTAGAACCTCTTTAGT+AGG | - | chr5.2:34499600-34499619 | None:intergenic | 35.0% |
| !! | TAATAATGGACTGGCCAATT+TGG | - | chr5.2:34497451-34497470 | None:intergenic | 35.0% |
| !! | TTGCATATTTGTTATCCACC+TGG | + | chr5.2:34498128-34498147 | MS.gene55400:intron | 35.0% |
| !! | TTTGGCTTCTTCAGCTTTTA+TGG | - | chr5.2:34499648-34499667 | None:intergenic | 35.0% |
| !!! | CCTTATGCTTATTTTGATGC+AGG | + | chr5.2:34498585-34498604 | MS.gene55400:intron | 35.0% |
| !!! | CTTATTTTGATGCAGGAAAG+GGG | + | chr5.2:34498592-34498611 | MS.gene55400:intron | 35.0% |
| !!! | GCTTATTTTGATGCAGGAAA+GGG | + | chr5.2:34498591-34498610 | MS.gene55400:intron | 35.0% |
| !!! | TGCTTATTTTGATGCAGGAA+AGG | + | chr5.2:34498590-34498609 | MS.gene55400:intron | 35.0% |
| AAAGCTTGGCCAAGTAAACT+TGG | - | chr5.2:34496772-34496791 | None:intergenic | 40.0% | |
| AAATCTGATGGCCAACAAGT+CGG | - | chr5.2:34497976-34497995 | None:intergenic | 40.0% | |
| AAGCTTGGCCAAGTAAACTT+GGG | - | chr5.2:34496771-34496790 | None:intergenic | 40.0% | |
| CATAGAATCTGTATGACTGG+TGG | + | chr5.2:34498081-34498100 | MS.gene55400:intron | 40.0% | |
| CGATTCTCTCATACTTTGCA+TGG | + | chr5.2:34498915-34498934 | MS.gene55400:intron | 40.0% | |
| CTGAAACCCTATAACTTGAG+CGG | - | chr5.2:34498221-34498240 | None:intergenic | 40.0% | |
| GAATCGATTGCTTACCTTTC+AGG | - | chr5.2:34498901-34498920 | None:intergenic | 40.0% | |
| GACAATTATTGACCAGCATC+TGG | + | chr5.2:34497846-34497865 | MS.gene55400:CDS | 40.0% | |
| GATCAAGAGTTACTGCCAAA+AGG | + | chr5.2:34497786-34497805 | MS.gene55400:CDS | 40.0% | |
| GATTACTCTTGCGGTGATTA+GGG | - | chr5.2:34499374-34499393 | None:intergenic | 40.0% | |
| GGACTACGAAATATGGAAAC+TGG | + | chr5.2:34498422-34498441 | MS.gene55400:intron | 40.0% | |
| TAAGAAACTGTGCCTGCTAT+TGG | + | chr5.2:34499452-34499471 | MS.gene55400:intron | 40.0% | |
| TAGAACTGCTCCTACTAAAG+AGG | + | chr5.2:34499587-34499606 | MS.gene55400:intron | 40.0% | |
| TATGTCCTCAATTGAGCAGA+AGG | + | chr5.2:34497729-34497748 | MS.gene55400:CDS | 40.0% | |
| TCACTAGAAGAAACTCACTC+TGG | - | chr5.2:34499512-34499531 | None:intergenic | 40.0% | |
| TCTTGAACTCAGCAAGATAC+CGG | - | chr5.2:34498625-34498644 | None:intergenic | 40.0% | |
| TGATTACTCTTGCGGTGATT+AGG | - | chr5.2:34499375-34499394 | None:intergenic | 40.0% | |
| TGATTAGGGACAAGTCAACT+TGG | - | chr5.2:34499360-34499379 | None:intergenic | 40.0% | |
| TTGAACTAACTGTGGAAGAG+AGG | + | chr5.2:34497647-34497666 | MS.gene55400:CDS | 40.0% | |
| TTGGCATTCCATATCCTAGT+GGG | + | chr5.2:34499313-34499332 | MS.gene55400:intron | 40.0% | |
| ! | AAGTCAACTTGGTGGACAAT+GGG | - | chr5.2:34499349-34499368 | None:intergenic | 40.0% |
| ! | CAAAAGCTTGTTTGGCCAAA+TGG | - | chr5.2:34499001-34499020 | None:intergenic | 40.0% |
| ! | GTTCTTGCTGATGCATTGAT+TGG | + | chr5.2:34497051-34497070 | MS.gene55400:intron | 40.0% |
| ! | TCAAATCCTTTCCGACTTGT+TGG | + | chr5.2:34497962-34497981 | MS.gene55400:intron | 40.0% |
| ! | TTTTTGACAAGGTTGGGGTA+AGG | - | chr5.2:34499414-34499433 | None:intergenic | 40.0% |
| AAGATCAGTGTTTGCAGTGG+CGG | - | chr5.2:34498806-34498825 | None:intergenic | 45.0% | |
| AGTTGAGTGCAAGTCCAAGA+CGG | - | chr5.2:34498846-34498865 | None:intergenic | 45.0% | |
| CATTTGTCCCCACTAGGATA+TGG | - | chr5.2:34499324-34499343 | None:intergenic | 45.0% | |
| CGAGTGGATGATTACTCTTG+CGG | - | chr5.2:34499383-34499402 | None:intergenic | 45.0% | |
| CTTGAGTGAAGAGTCGTACA+AGG | + | chr5.2:34499046-34499065 | MS.gene55400:CDS | 45.0% | |
| CTTGTACGACTCTTCACTCA+AGG | - | chr5.2:34499048-34499067 | None:intergenic | 45.0% | |
| GACTGACCAAGAGAGAAAAG+AGG | + | chr5.2:34498643-34498662 | MS.gene55400:CDS | 45.0% | |
| GAGAGAGACCCAAGTTTACT+TGG | + | chr5.2:34496760-34496779 | MS.gene55400:CDS | 45.0% | |
| GAGGAACTCTCCAAAATCTG+TGG | + | chr5.2:34497814-34497833 | MS.gene55400:CDS | 45.0% | |
| GAGTTACTGCCAAAAGGTTG+AGG | + | chr5.2:34497792-34497811 | MS.gene55400:CDS | 45.0% | |
| GCAGGAAAGGGGATTATTTC+CGG | + | chr5.2:34498603-34498622 | MS.gene55400:intron | 45.0% | |
| GGGTAAGGATACAAATCGAG+TGG | - | chr5.2:34499399-34499418 | None:intergenic | 45.0% | |
| GTTGGCATTCCATATCCTAG+TGG | + | chr5.2:34499312-34499331 | MS.gene55400:intron | 45.0% | |
| TCAACACATCCAATCCGTCT+TGG | + | chr5.2:34498829-34498848 | MS.gene55400:CDS | 45.0% | |
| TGGAAGATCAGTGTTTGCAG+TGG | - | chr5.2:34498809-34498828 | None:intergenic | 45.0% | |
| TGGCATTCCATATCCTAGTG+GGG | + | chr5.2:34499314-34499333 | MS.gene55400:intron | 45.0% | |
| TTACTGCCAAAAGGTTGAGG+AGG | + | chr5.2:34497795-34497814 | MS.gene55400:CDS | 45.0% | |
| TTAGGGACAAGTCAACTTGG+TGG | - | chr5.2:34499357-34499376 | None:intergenic | 45.0% | |
| ! | AGAGTTCCTCCTCAACCTTT+TGG | - | chr5.2:34497804-34497823 | None:intergenic | 45.0% |
| ! | CAAGTCAACTTGGTGGACAA+TGG | - | chr5.2:34499350-34499369 | None:intergenic | 45.0% |
| ! | CGCCTCATCAAAAGCTTGTT+TGG | - | chr5.2:34499009-34499028 | None:intergenic | 45.0% |
| ! | GAAAACATTAGCTTCTGCCG+AGG | - | chr5.2:34497884-34497903 | None:intergenic | 45.0% |
| ! | GGCCAAACAAGCTTTTGATG+AGG | + | chr5.2:34499004-34499023 | MS.gene55400:CDS | 45.0% |
| ! | TTCAGCTTGTTCGGAAAGCT+TGG | - | chr5.2:34496786-34496805 | None:intergenic | 45.0% |
| !! | AGACGGATTGGATGTGTTGA+TGG | - | chr5.2:34498829-34498848 | None:intergenic | 45.0% |
| !! | TTTCTGGCTCACACGTACTT+TGG | + | chr5.2:34498545-34498564 | MS.gene55400:intron | 45.0% |
| !!! | TAATTTTGTTATTTTTTAAT+GGG | + | chr5.2:34496826-34496845 | MS.gene55400:intron | 5.0% |
| !!! | TTAATTTTGTTATTTTTTAA+TGG | + | chr5.2:34496825-34496844 | MS.gene55400:intron | 5.0% |
| !!! | TTATTTTATTTTAATTTTGA+AGG | + | chr5.2:34497026-34497045 | MS.gene55400:intron | 5.0% |
| AACTTACAGGGCCTGCCATT+TGG | + | chr5.2:34498983-34499002 | MS.gene55400:intron | 50.0% | |
| AATCAGAGGTCCAGAGAGTC+AGG | - | chr5.2:34499106-34499125 | None:intergenic | 50.0% | |
| AGTGCAAGTCCAAGACGGAT+TGG | - | chr5.2:34498841-34498860 | None:intergenic | 50.0% | |
| CTCCTCCTTCTGCTCAATTG+AGG | - | chr5.2:34497737-34497756 | None:intergenic | 50.0% | |
| GAGCAGAAGGAGGAGTCTAA+GGG | + | chr5.2:34497742-34497761 | MS.gene55400:CDS | 50.0% | |
| GCAGTCACTGAAAGGATACG+AGG | + | chr5.2:34498673-34498692 | MS.gene55400:CDS | 50.0% | |
| GGTCTCTCTCTCTTTCTCAG+CGG | - | chr5.2:34496750-34496769 | None:intergenic | 50.0% | |
| GTCCTCAATTGAGCAGAAGG+AGG | + | chr5.2:34497732-34497751 | MS.gene55400:CDS | 50.0% | |
| TATCCCTTACCTCCATCCTC+TGG | - | chr5.2:34499131-34499150 | None:intergenic | 50.0% | |
| TCCATCCTCTGGCAAATCAG+AGG | - | chr5.2:34499120-34499139 | None:intergenic | 50.0% | |
| TGAGAGACAACCTGACTCTC+TGG | + | chr5.2:34499093-34499112 | MS.gene55400:CDS | 50.0% | |
| TGAGCAGAAGGAGGAGTCTA+AGG | + | chr5.2:34497741-34497760 | MS.gene55400:CDS | 50.0% | |
| TGATGAGGCGATTGCAGAGT+TGG | + | chr5.2:34499019-34499038 | MS.gene55400:CDS | 50.0% | |
| TGATGGCCAACAAGTCGGAA+AGG | - | chr5.2:34497971-34497990 | None:intergenic | 50.0% | |
| TTGCCAGAGGATGGAGGTAA+GGG | + | chr5.2:34499125-34499144 | MS.gene55400:intron | 50.0% | |
| TTGGTGCACGAAGAGCTTCA+TGG | + | chr5.2:34497701-34497720 | MS.gene55400:CDS | 50.0% | |
| TTTGCCAGAGGATGGAGGTA+AGG | + | chr5.2:34499124-34499143 | MS.gene55400:intron | 50.0% | |
| ! | AACATTAGCTTCTGCCGAGG+TGG | - | chr5.2:34497881-34497900 | None:intergenic | 50.0% |
| ! | ACCTCTGATTTGCCAGAGGA+TGG | + | chr5.2:34499116-34499135 | MS.gene55400:CDS | 50.0% |
| ! | AGCTTGTTTGGCCAAATGGC+AGG | - | chr5.2:34498997-34499016 | None:intergenic | 50.0% |
| ! | CAGCAGCCTCTTTTCTCTCT+TGG | - | chr5.2:34498652-34498671 | None:intergenic | 50.0% |
| ! | TCTGATTTGCCAGAGGATGG+AGG | + | chr5.2:34499119-34499138 | MS.gene55400:CDS | 50.0% |
| GAAACGGGTGCTCATCTACC+AGG | - | chr5.2:34498149-34498168 | None:intergenic | 55.0% | |
| GAGAGGAACCTCCTCTCAGT+TGG | + | chr5.2:34497664-34497683 | MS.gene55400:CDS | 55.0% | |
| GCTGCTGAGCAGTCACTGAA+AGG | + | chr5.2:34498665-34498684 | MS.gene55400:CDS | 55.0% | |
| TGGAAGCAGGAACCAGATGC+TGG | - | chr5.2:34497861-34497880 | None:intergenic | 55.0% | |
| ! | CTGGACCTCTGATTTGCCAG+AGG | + | chr5.2:34499112-34499131 | MS.gene55400:CDS | 55.0% |
| ! | TCTGGTTCCTGCTTCCACCT+CGG | + | chr5.2:34497864-34497883 | MS.gene55400:CDS | 55.0% |
| !! | TGGGAGCATTTGTCCCCACT+AGG | - | chr5.2:34499330-34499349 | None:intergenic | 55.0% |
| ACGGGTGCTCATCTACCAGG+TGG | - | chr5.2:34498146-34498165 | None:intergenic | 60.0% | |
| GCTTCTGCCGAGGTGGAAGC+AGG | - | chr5.2:34497874-34497893 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 34496743 | 34499682 | 34496743 | ID=MS.gene55400 |
| chr5.2 | mRNA | 34496743 | 34499682 | 34496743 | ID=MS.gene55400.t1;Parent=MS.gene55400 |
| chr5.2 | exon | 34496743 | 34496815 | 34496743 | ID=MS.gene55400.t1.exon1;Parent=MS.gene55400.t1 |
| chr5.2 | CDS | 34496743 | 34496815 | 34496743 | ID=cds.MS.gene55400.t1;Parent=MS.gene55400.t1 |
| chr5.2 | exon | 34497608 | 34497914 | 34497608 | ID=MS.gene55400.t1.exon2;Parent=MS.gene55400.t1 |
| chr5.2 | CDS | 34497608 | 34497914 | 34497608 | ID=cds.MS.gene55400.t1;Parent=MS.gene55400.t1 |
| chr5.2 | exon | 34498607 | 34498694 | 34498607 | ID=MS.gene55400.t1.exon3;Parent=MS.gene55400.t1 |
| chr5.2 | CDS | 34498607 | 34498694 | 34498607 | ID=cds.MS.gene55400.t1;Parent=MS.gene55400.t1 |
| chr5.2 | exon | 34498796 | 34498905 | 34498796 | ID=MS.gene55400.t1.exon4;Parent=MS.gene55400.t1 |
| chr5.2 | CDS | 34498796 | 34498905 | 34498796 | ID=cds.MS.gene55400.t1;Parent=MS.gene55400.t1 |
| chr5.2 | exon | 34498992 | 34499140 | 34498992 | ID=MS.gene55400.t1.exon5;Parent=MS.gene55400.t1 |
| chr5.2 | CDS | 34498992 | 34499140 | 34498992 | ID=cds.MS.gene55400.t1;Parent=MS.gene55400.t1 |
| chr5.2 | exon | 34499636 | 34499682 | 34499636 | ID=MS.gene55400.t1.exon6;Parent=MS.gene55400.t1 |
| chr5.2 | CDS | 34499636 | 34499682 | 34499636 | ID=cds.MS.gene55400.t1;Parent=MS.gene55400.t1 |
| Gene Sequence |
| Protein sequence |
