Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045073.t1 | XP_003602025.2 | 95.1 | 694 | 34 | 0 | 1 | 694 | 1 | 694 | 0.00E+00 | 1321.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045073.t1 | Q9CAP8 | 72.9 | 694 | 184 | 2 | 1 | 693 | 1 | 691 | 7.5e-310 | 1063.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045073.t1 | G7J4F3 | 95.1 | 694 | 34 | 0 | 1 | 694 | 1 | 694 | 0.0e+00 | 1321.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045073.t1 | MTR_3g087980 | 97.839 | 694 | 15 | 0 | 1 | 694 | 1 | 694 | 0.0 | 1399 |
MS.gene045073.t1 | MTR_1g030290 | 76.259 | 695 | 163 | 2 | 1 | 693 | 1 | 695 | 0.0 | 1114 |
MS.gene045073.t1 | MTR_3g082660 | 61.295 | 695 | 265 | 2 | 3 | 693 | 33 | 727 | 0.0 | 896 |
MS.gene045073.t1 | MTR_1g104810 | 36.106 | 601 | 354 | 9 | 100 | 694 | 43 | 619 | 5.98e-120 | 372 |
MS.gene045073.t1 | MTR_1g104810 | 35.349 | 645 | 373 | 11 | 56 | 694 | 80 | 686 | 1.04e-119 | 374 |
MS.gene045073.t1 | MTR_5g009350 | 32.099 | 648 | 395 | 14 | 55 | 692 | 42 | 654 | 7.12e-103 | 328 |
MS.gene045073.t1 | MTR_5g009350 | 32.293 | 641 | 389 | 14 | 55 | 685 | 42 | 647 | 7.05e-102 | 325 |
MS.gene045073.t1 | MTR_5g009360 | 31.944 | 648 | 396 | 14 | 55 | 692 | 42 | 654 | 5.00e-100 | 321 |
MS.gene045073.t1 | MTR_7g109830 | 32.366 | 655 | 386 | 14 | 56 | 694 | 41 | 654 | 1.87e-99 | 320 |
MS.gene045073.t1 | MTR_4g068670 | 31.062 | 631 | 382 | 16 | 78 | 692 | 58 | 651 | 2.26e-93 | 303 |
MS.gene045073.t1 | MTR_1g086600 | 31.250 | 672 | 407 | 13 | 37 | 692 | 44 | 676 | 8.88e-93 | 303 |
MS.gene045073.t1 | MTR_8g099420 | 30.462 | 650 | 405 | 12 | 54 | 692 | 42 | 655 | 1.46e-92 | 301 |
MS.gene045073.t1 | MTR_1g034360 | 30.015 | 683 | 420 | 16 | 27 | 692 | 12 | 653 | 9.14e-91 | 296 |
MS.gene045073.t1 | MTR_5g009350 | 32.176 | 547 | 327 | 13 | 55 | 591 | 42 | 554 | 7.99e-85 | 279 |
MS.gene045073.t1 | MTR_5g009360 | 33.706 | 537 | 321 | 13 | 166 | 692 | 17 | 528 | 1.82e-84 | 276 |
MS.gene045073.t1 | MTR_5g009350 | 31.892 | 555 | 334 | 13 | 55 | 599 | 42 | 562 | 1.24e-83 | 275 |
MS.gene045073.t1 | MTR_3g084470 | 25.234 | 642 | 393 | 20 | 106 | 692 | 105 | 714 | 3.95e-38 | 151 |
MS.gene045073.t1 | MTR_3g084450 | 24.493 | 641 | 402 | 16 | 106 | 692 | 107 | 719 | 4.49e-38 | 151 |
MS.gene045073.t1 | MTR_8g083170 | 25.078 | 642 | 399 | 18 | 106 | 692 | 109 | 723 | 8.71e-35 | 141 |
MS.gene045073.t1 | MTR_3g084450 | 25.155 | 485 | 296 | 13 | 248 | 692 | 54 | 511 | 6.61e-30 | 124 |
MS.gene045073.t1 | MTR_4g077900 | 29.825 | 342 | 166 | 14 | 248 | 579 | 121 | 398 | 4.48e-25 | 109 |
MS.gene045073.t1 | MTR_5g027500 | 27.160 | 486 | 258 | 20 | 115 | 579 | 78 | 488 | 1.85e-24 | 108 |
MS.gene045073.t1 | MTR_1g026310 | 27.405 | 343 | 175 | 12 | 248 | 581 | 205 | 482 | 1.71e-20 | 96.3 |
MS.gene045073.t1 | MTR_5g027480 | 24.089 | 494 | 279 | 18 | 106 | 584 | 68 | 480 | 2.50e-19 | 92.4 |
MS.gene045073.t1 | MTR_1g090737 | 26.087 | 345 | 178 | 14 | 247 | 581 | 211 | 488 | 2.77e-16 | 83.2 |
MS.gene045073.t1 | MTR_3g035130 | 24.217 | 479 | 279 | 15 | 106 | 577 | 32 | 433 | 2.94e-16 | 82.4 |
MS.gene045073.t1 | MTR_3g035130 | 24.008 | 479 | 280 | 15 | 106 | 577 | 32 | 433 | 3.34e-16 | 82.4 |
MS.gene045073.t1 | MTR_5g076220 | 29.804 | 255 | 133 | 9 | 441 | 682 | 322 | 543 | 1.50e-14 | 77.4 |
MS.gene045073.t1 | MTR_2g095510 | 28.512 | 242 | 131 | 11 | 419 | 649 | 304 | 514 | 1.10e-12 | 71.6 |
MS.gene045073.t1 | MTR_5g076240 | 49.398 | 83 | 36 | 3 | 500 | 582 | 391 | 467 | 1.15e-12 | 71.6 |
MS.gene045073.t1 | MTR_3g064420 | 33.500 | 200 | 99 | 8 | 422 | 608 | 306 | 484 | 1.40e-12 | 71.2 |
MS.gene045073.t1 | MTR_1g063110 | 28.191 | 188 | 113 | 8 | 407 | 583 | 296 | 472 | 1.64e-12 | 70.9 |
MS.gene045073.t1 | MTR_4g057730 | 29.384 | 211 | 116 | 8 | 445 | 649 | 334 | 517 | 2.28e-12 | 70.5 |
MS.gene045073.t1 | MTR_2g105570 | 27.530 | 247 | 149 | 10 | 419 | 646 | 310 | 545 | 5.92e-12 | 69.3 |
MS.gene045073.t1 | MTR_5g076200 | 30.601 | 183 | 97 | 6 | 500 | 682 | 391 | 543 | 6.49e-12 | 68.9 |
MS.gene045073.t1 | MTR_0161s0050 | 29.947 | 187 | 101 | 6 | 500 | 686 | 393 | 549 | 7.79e-12 | 68.9 |
MS.gene045073.t1 | MTR_1g063120 | 30.488 | 164 | 101 | 6 | 425 | 583 | 321 | 476 | 2.25e-11 | 67.4 |
MS.gene045073.t1 | MTR_5g007640 | 28.571 | 245 | 150 | 11 | 419 | 647 | 349 | 584 | 2.37e-11 | 67.4 |
MS.gene045073.t1 | MTR_4g057730 | 31.250 | 144 | 83 | 6 | 445 | 583 | 334 | 466 | 4.35e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045073.t1 | AT1G77590 | 72.911 | 694 | 184 | 2 | 1 | 693 | 1 | 691 | 0.0 | 1088 |
MS.gene045073.t1 | AT2G04350 | 64.190 | 673 | 238 | 1 | 24 | 693 | 48 | 720 | 0.0 | 909 |
MS.gene045073.t1 | AT2G04350 | 64.190 | 673 | 238 | 1 | 24 | 693 | 48 | 720 | 0.0 | 909 |
MS.gene045073.t1 | AT1G77590 | 75.503 | 547 | 131 | 1 | 147 | 693 | 2 | 545 | 0.0 | 886 |
MS.gene045073.t1 | AT5G27600 | 36.318 | 603 | 350 | 12 | 100 | 694 | 113 | 689 | 1.36e-121 | 379 |
MS.gene045073.t1 | AT3G05970 | 35.257 | 641 | 375 | 10 | 56 | 692 | 83 | 687 | 8.85e-117 | 366 |
MS.gene045073.t1 | AT4G23850 | 32.569 | 654 | 386 | 17 | 54 | 692 | 42 | 655 | 3.19e-101 | 324 |
MS.gene045073.t1 | AT1G64400 | 32.198 | 646 | 389 | 14 | 61 | 694 | 49 | 657 | 5.22e-99 | 318 |
MS.gene045073.t1 | AT2G47240 | 31.336 | 651 | 398 | 12 | 56 | 694 | 41 | 654 | 5.32e-95 | 308 |
MS.gene045073.t1 | AT2G47240 | 31.336 | 651 | 398 | 12 | 56 | 694 | 41 | 654 | 5.32e-95 | 308 |
MS.gene045073.t1 | AT2G47240 | 31.336 | 651 | 398 | 12 | 56 | 694 | 41 | 654 | 5.32e-95 | 308 |
MS.gene045073.t1 | AT4G11030 | 31.279 | 649 | 401 | 14 | 54 | 692 | 42 | 655 | 3.63e-94 | 306 |
MS.gene045073.t1 | AT2G47240 | 32.085 | 614 | 382 | 11 | 93 | 694 | 5 | 595 | 9.39e-94 | 303 |
MS.gene045073.t1 | AT1G49430 | 31.631 | 607 | 382 | 10 | 100 | 694 | 74 | 659 | 9.74e-93 | 302 |
MS.gene045073.t1 | AT1G49430 | 32.080 | 452 | 274 | 10 | 100 | 539 | 74 | 504 | 2.64e-60 | 211 |
MS.gene045073.t1 | AT3G23790 | 25.816 | 643 | 387 | 23 | 107 | 692 | 112 | 721 | 1.73e-39 | 155 |
MS.gene045073.t1 | AT4G14070 | 25.697 | 646 | 377 | 22 | 106 | 693 | 127 | 727 | 2.42e-37 | 149 |
MS.gene045073.t1 | AT4G19010 | 29.532 | 342 | 171 | 14 | 248 | 581 | 205 | 484 | 2.33e-25 | 111 |
MS.gene045073.t1 | AT1G20500 | 27.679 | 336 | 176 | 11 | 248 | 579 | 198 | 470 | 9.32e-23 | 103 |
MS.gene045073.t1 | AT1G20510 | 28.198 | 344 | 174 | 12 | 248 | 583 | 190 | 468 | 3.88e-21 | 97.8 |
MS.gene045073.t1 | AT1G20510 | 28.529 | 340 | 170 | 12 | 248 | 579 | 190 | 464 | 6.85e-21 | 97.4 |
MS.gene045073.t1 | AT1G20510 | 27.950 | 322 | 160 | 11 | 248 | 561 | 190 | 447 | 4.68e-19 | 91.3 |
MS.gene045073.t1 | AT1G21540 | 28.324 | 346 | 165 | 13 | 251 | 581 | 191 | 468 | 7.40e-17 | 84.7 |
MS.gene045073.t1 | AT5G38120 | 25.893 | 336 | 180 | 14 | 248 | 579 | 200 | 470 | 1.01e-15 | 81.3 |
MS.gene045073.t1 | AT5G38120 | 26.254 | 339 | 175 | 15 | 248 | 579 | 200 | 470 | 1.13e-15 | 80.9 |
MS.gene045073.t1 | AT5G38120 | 26.254 | 339 | 175 | 15 | 248 | 579 | 200 | 470 | 1.13e-15 | 80.9 |
MS.gene045073.t1 | AT5G38120 | 26.254 | 339 | 175 | 15 | 248 | 579 | 200 | 470 | 1.27e-15 | 80.9 |
MS.gene045073.t1 | AT5G16340 | 32.075 | 212 | 114 | 7 | 478 | 689 | 369 | 550 | 2.27e-15 | 80.1 |
MS.gene045073.t1 | AT5G16370 | 30.194 | 361 | 158 | 15 | 248 | 588 | 186 | 472 | 3.15e-15 | 79.7 |
MS.gene045073.t1 | AT1G75960 | 31.959 | 194 | 104 | 6 | 480 | 673 | 371 | 536 | 3.96e-14 | 76.3 |
MS.gene045073.t1 | AT4G05160 | 28.033 | 239 | 136 | 9 | 419 | 649 | 309 | 519 | 5.91e-14 | 75.5 |
MS.gene045073.t1 | AT1G77240 | 48.780 | 82 | 37 | 2 | 500 | 581 | 390 | 466 | 4.59e-13 | 72.8 |
MS.gene045073.t1 | AT1G20480 | 33.537 | 164 | 92 | 7 | 422 | 579 | 333 | 485 | 4.99e-13 | 72.8 |
MS.gene045073.t1 | AT1G21530 | 31.250 | 192 | 108 | 7 | 404 | 581 | 284 | 465 | 6.91e-13 | 72.4 |
MS.gene045073.t1 | AT1G21530 | 34.839 | 155 | 79 | 6 | 441 | 581 | 317 | 463 | 2.60e-12 | 70.5 |
MS.gene045073.t1 | AT3G48990 | 31.361 | 169 | 98 | 5 | 418 | 581 | 281 | 436 | 2.72e-12 | 70.1 |
MS.gene045073.t1 | AT1G62940 | 25.348 | 359 | 177 | 15 | 245 | 584 | 179 | 465 | 4.46e-12 | 69.7 |
MS.gene045073.t1 | AT3G21240 | 27.344 | 256 | 137 | 13 | 419 | 646 | 316 | 550 | 1.15e-11 | 68.2 |
MS.gene045073.t1 | AT3G21230 | 26.423 | 246 | 153 | 10 | 419 | 647 | 331 | 565 | 6.72e-11 | 65.9 |
Find 166 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTGGTGGTGCACCCCTTTC+TGG | 0.130378 | 3.2:+75001765 | MS.gene045073:CDS |
TGGTAGCTGGTTTGGTGCTT+GGG | 0.253560 | 3.2:+75001662 | MS.gene045073:CDS |
TTCTCCCAACGAAGCATAAA+TGG | 0.267608 | 3.2:-74999274 | None:intergenic |
TTAACATATGTGGAAGGTTT+TGG | 0.268361 | 3.2:-75003505 | None:intergenic |
CCGCAAACGCCGCGGCTTAC+CGG | 0.287825 | 3.2:+74998753 | MS.gene045073:CDS |
AGAATGGTTTATTGCATTGC+AGG | 0.308254 | 3.2:+74999110 | MS.gene045073:CDS |
GCCGCGGCGTTTGCGGTTGT+TGG | 0.320837 | 3.2:-74998746 | None:intergenic |
CTCATCCTGCATTGGATGAA+TGG | 0.328825 | 3.2:+75007446 | MS.gene045073:CDS |
GATGTATCGGTTAGAGTTAA+TGG | 0.330847 | 3.2:-75001370 | None:intergenic |
CAGGTTGAGGCAGTTCTTCT+TGG | 0.331599 | 3.2:+75007349 | MS.gene045073:intron |
CTGGTTTGGTGCTTGGGGAT+TGG | 0.338123 | 3.2:+75001668 | MS.gene045073:CDS |
CGAAGGATGCAAGCGATTAA+TGG | 0.338298 | 3.2:+75001642 | MS.gene045073:CDS |
TGAGATCATTGATAGGAAAA+AGG | 0.339564 | 3.2:+75007216 | MS.gene045073:CDS |
TGCTGTAAAGGTTGATGAAC+GGG | 0.340717 | 3.2:+75007138 | MS.gene045073:intron |
TGTTTGTTCAGGCTTGCTTC+AGG | 0.342021 | 3.2:+74999232 | MS.gene045073:intron |
ACATCCTTTGTCCCAAGTTC+AGG | 0.343319 | 3.2:-75001149 | None:intergenic |
ATGGTAGCTGGTTTGGTGCT+TGG | 0.343553 | 3.2:+75001661 | MS.gene045073:CDS |
AAATCACTTGTAAATATTGC+TGG | 0.347751 | 3.2:+75000677 | MS.gene045073:CDS |
TCTTCTTGGCAGCCCCTTTG+TGG | 0.359980 | 3.2:+75007363 | MS.gene045073:CDS |
GCTTCTGGTTTGGCGAAGAT+TGG | 0.360072 | 3.2:+74999042 | MS.gene045073:CDS |
AGACCATATGCTTGACCTAT+TGG | 0.362678 | 3.2:-75003415 | None:intergenic |
TGAATTGATCTCACGTGAAA+TGG | 0.368695 | 3.2:+74998924 | MS.gene045073:CDS |
GCGATTAATGGTAGCTGGTT+TGG | 0.369688 | 3.2:+75001654 | MS.gene045073:CDS |
TCATCCTGCATTGGATGAAT+GGG | 0.370904 | 3.2:+75007447 | MS.gene045073:CDS |
GGCTGTTTCTCATCCTGCAT+TGG | 0.384325 | 3.2:+75007438 | MS.gene045073:CDS |
GCTGCTGTTGGAGGCTGTAT+AGG | 0.394725 | 3.2:+75001337 | MS.gene045073:CDS |
AGATTCATCAACATTTGTCT+TGG | 0.406370 | 3.2:+75001798 | MS.gene045073:CDS |
ACAATGAACGCCTACATTGC+CGG | 0.408215 | 3.2:+74998685 | None:intergenic |
CCGGTAAGCCGCGGCGTTTG+CGG | 0.410043 | 3.2:-74998753 | None:intergenic |
GTGAAAATTGTTCCTGAACT+TGG | 0.412273 | 3.2:+75001137 | MS.gene045073:CDS |
GATTCATCAACATTTGTCTT+GGG | 0.413381 | 3.2:+75001799 | MS.gene045073:CDS |
AACTGCAACATCAGCTGAAA+GGG | 0.414993 | 3.2:-75000843 | None:intergenic |
CCTCGTGGTGAAATAGTAAT+TGG | 0.418609 | 3.2:+75004699 | MS.gene045073:CDS |
GTAGTTGAATATCCACCTTC+AGG | 0.419524 | 3.2:-75004663 | None:intergenic |
GGAAGCAAAGAAGGCTCGTC+TGG | 0.420989 | 3.2:+75008193 | MS.gene045073:intron |
TAGAATTTGTTTGCTGCTGT+TGG | 0.423659 | 3.2:+75001325 | MS.gene045073:intron |
AACATAATGTTGTCCACAAA+GGG | 0.431416 | 3.2:-75007376 | None:intergenic |
TTCATCTTGGAGAGTATCAA+TGG | 0.436487 | 3.2:+74998980 | MS.gene045073:CDS |
GCCGACGTCGGCGGCGAACC+TGG | 0.444746 | 3.2:+74998775 | MS.gene045073:CDS |
AAAACCTTCCACATATGTTA+AGG | 0.446570 | 3.2:+75003507 | MS.gene045073:CDS |
GTGGTCCAAGTGTCACTCTT+GGG | 0.449191 | 3.2:+75004721 | MS.gene045073:CDS |
GACCCATGGACTCCTGAGAC+TGG | 0.453555 | 3.2:+75008254 | MS.gene045073:CDS |
AATTTGTTTGCTGCTGTTGG+AGG | 0.455909 | 3.2:+75001328 | MS.gene045073:CDS |
GTTACCATTTATGCTTCGTT+GGG | 0.457080 | 3.2:+74999270 | MS.gene045073:CDS |
TGTTACCATTTATGCTTCGT+TGG | 0.470259 | 3.2:+74999269 | MS.gene045073:CDS |
TCTTTGTGAGTCACCAGAAA+GGG | 0.471719 | 3.2:-75001778 | None:intergenic |
TTTGTGTCATTCATTGAATG+AGG | 0.476608 | 3.2:+74999302 | MS.gene045073:CDS |
CCGCATCTGCTCAGCATGGA+TGG | 0.477689 | 3.2:+75000756 | MS.gene045073:CDS |
GCAGTAACTAGGCCAGTCTC+AGG | 0.478808 | 3.2:-75008266 | None:intergenic |
GTTGCCTTGAGATCATTGAT+AGG | 0.484550 | 3.2:+75007209 | MS.gene045073:CDS |
TTAAATTGCTTTCTGACCCA+TGG | 0.484569 | 3.2:+75008240 | MS.gene045073:CDS |
GGTTCGCCGCCGACGTCGGC+CGG | 0.487708 | 3.2:-74998772 | None:intergenic |
TGGTTGCGGACCGCGAAACC+AGG | 0.488283 | 3.2:-74998793 | None:intergenic |
AAGTTCGAGAAGCTTCATCT+TGG | 0.494487 | 3.2:+74998967 | MS.gene045073:CDS |
TCTTAAGAGCTGCAGTAACT+AGG | 0.495063 | 3.2:-75008277 | None:intergenic |
AGGCCAGTCTCAGGAGTCCA+TGG | 0.497067 | 3.2:-75008257 | None:intergenic |
GGTAGCTGGTTTGGTGCTTG+GGG | 0.497596 | 3.2:+75001663 | MS.gene045073:CDS |
CCTTCCCAGAGTGAAGTTAA+CGG | 0.498435 | 3.2:-74998829 | None:intergenic |
CGAACACGATCAAGAATTGC+TGG | 0.500340 | 3.2:-75001460 | None:intergenic |
GAGTATCAATGGGTTACGTA+TGG | 0.500959 | 3.2:+74998991 | MS.gene045073:CDS |
TGCAAGCGATTAATGGTAGC+TGG | 0.501413 | 3.2:+75001649 | MS.gene045073:CDS |
GGTTGTTGGAGTTGCGGAAG+AGG | 0.502140 | 3.2:-74998732 | None:intergenic |
AAGCCTTTCAACATCAGAAA+AGG | 0.502433 | 3.2:-75000789 | None:intergenic |
TGAAAATTGTTCCTGAACTT+GGG | 0.504500 | 3.2:+75001138 | MS.gene045073:CDS |
CGCGGCTTACCGGCCGACGT+CGG | 0.506121 | 3.2:+74998763 | MS.gene045073:CDS |
GAAATGGAAACTTCTTCTGA+TGG | 0.507585 | 3.2:+74998940 | MS.gene045073:CDS |
GGTGGTCCAAGTGTCACTCT+TGG | 0.507960 | 3.2:+75004720 | MS.gene045073:CDS |
AAGTTACTGTGTGGCACTTG+TGG | 0.512481 | 3.2:+75007417 | MS.gene045073:CDS |
AATAACTACCTTAACATATG+TGG | 0.514991 | 3.2:-75003515 | None:intergenic |
GGCTTACCGGCCGACGTCGG+CGG | 0.515433 | 3.2:+74998766 | MS.gene045073:CDS |
CATCTCCGTTAACTTCACTC+TGG | 0.517195 | 3.2:+74998824 | MS.gene045073:CDS |
GAGATGTGACGCGGTGGTTG+CGG | 0.517808 | 3.2:-74998807 | None:intergenic |
TACGACCACCCAGAATTGCT+TGG | 0.517811 | 3.2:-75001728 | None:intergenic |
AGGTTGATGAACGGGGAATG+AGG | 0.520598 | 3.2:+75007146 | MS.gene045073:intron |
TGAGCAGATGCGGCATCAGA+TGG | 0.520910 | 3.2:-75000746 | None:intergenic |
CGGCGGCGAACCTGGTTTCG+CGG | 0.524349 | 3.2:+74998783 | MS.gene045073:CDS |
TGTTCCTGAACTTGGGACAA+AGG | 0.527275 | 3.2:+75001145 | MS.gene045073:CDS |
AATTCAAGAATATGAGCCAT+TGG | 0.527773 | 3.2:-75001188 | None:intergenic |
GCATGGAGAATATGTGTCCC+TGG | 0.530319 | 3.2:+75007255 | MS.gene045073:CDS |
GCTCCAATAGGTCAAGCATA+TGG | 0.531681 | 3.2:+75003412 | MS.gene045073:CDS |
AACGATGAGGCCGGCAATGT+AGG | 0.531894 | 3.2:-74998695 | None:intergenic |
AGGGGTAAATCAGCCTCGAT+AGG | 0.532424 | 3.2:-75000824 | None:intergenic |
CGTGCATGCATACCTTTCCC+AGG | 0.533958 | 3.2:-75007273 | None:intergenic |
CGCTTGCATCCTTCGTGCAT+AGG | 0.534962 | 3.2:-75001634 | None:intergenic |
GTCATACAGGTAAATGCAAA+GGG | 0.535324 | 3.2:+75001582 | MS.gene045073:intron |
CGACGTCGGCCGGTAAGCCG+CGG | 0.536999 | 3.2:-74998762 | None:intergenic |
ATATTTGCAGGAAGCAAAGA+AGG | 0.537806 | 3.2:+75008184 | MS.gene045073:intron |
ATCTTTGTGAGTCACCAGAA+AGG | 0.538336 | 3.2:-75001779 | None:intergenic |
ATGCTGACACTAGAGAAGAA+TGG | 0.546458 | 3.2:+74999094 | MS.gene045073:CDS |
TAACTGCAACATCAGCTGAA+AGG | 0.546955 | 3.2:-75000844 | None:intergenic |
ATTCTTGATCGTGTTCGTGA+TGG | 0.547019 | 3.2:+75001466 | MS.gene045073:CDS |
ATGTACACAAGTGGAAGTAC+AGG | 0.547355 | 3.2:+75000869 | MS.gene045073:CDS |
CAAGTGATTTCAATTCTTTG+CGG | 0.548594 | 3.2:-75000664 | None:intergenic |
GAAGCCCATTCATCCAATGC+AGG | 0.549662 | 3.2:-75007451 | None:intergenic |
ACCAGGTTCGCCGCCGACGT+CGG | 0.550810 | 3.2:-74998776 | None:intergenic |
CAGTTAATCGACTGGCCTGA+AGG | 0.550964 | 3.2:+75004648 | MS.gene045073:intron |
GGTGCATGCATCACTTGTAA+AGG | 0.552621 | 3.2:+75007537 | MS.gene045073:CDS |
AGTATCAATGGGTTACGTAT+GGG | 0.553654 | 3.2:+74998992 | MS.gene045073:CDS |
CCATCCATGCTGAGCAGATG+CGG | 0.554020 | 3.2:-75000756 | None:intergenic |
TCATCTTGGAGAGTATCAAT+GGG | 0.554276 | 3.2:+74998981 | MS.gene045073:CDS |
CAACATAATGTTGTCCACAA+AGG | 0.555949 | 3.2:-75007377 | None:intergenic |
GATGAATGGGCTTCAAAGCA+AGG | 0.558170 | 3.2:+75007460 | MS.gene045073:CDS |
CTCACGGAGACTTGTGCTGG+TGG | 0.563040 | 3.2:+75003436 | MS.gene045073:CDS |
GTTGGAGGCTGTATAGGATA+CGG | 0.563483 | 3.2:+75001343 | MS.gene045073:CDS |
TTGCTGTAAAGGTTGATGAA+CGG | 0.570020 | 3.2:+75007137 | MS.gene045073:intron |
ACTATTTCACCACGAGGCAT+CGG | 0.570238 | 3.2:-75004693 | None:intergenic |
GACGAGAGGAACGATGAGGC+CGG | 0.570309 | 3.2:-74998704 | None:intergenic |
ATCTCCGTTAACTTCACTCT+GGG | 0.571471 | 3.2:+74998825 | MS.gene045073:CDS |
GATACTTCTGTTGGCCGTGT+AGG | 0.572271 | 3.2:+75003478 | MS.gene045073:CDS |
GTAGGTAGATTTCATGCGGA+TGG | 0.573162 | 3.2:+75007187 | MS.gene045073:CDS |
AGAATATGTGTCCCTGGGAA+AGG | 0.579752 | 3.2:+75007261 | MS.gene045073:CDS |
CGTGGTGAAATAGTAATTGG+TGG | 0.584455 | 3.2:+75004702 | MS.gene045073:CDS |
GGTCTCACGGAGACTTGTGC+TGG | 0.586067 | 3.2:+75003433 | MS.gene045073:CDS |
GGGGTAAATCAGCCTCGATA+GGG | 0.587669 | 3.2:-75000823 | None:intergenic |
GGTCATACAGGTAAATGCAA+AGG | 0.587700 | 3.2:+75001581 | MS.gene045073:intron |
GTTTGCGGTTGTTGGAGTTG+CGG | 0.591559 | 3.2:-74998738 | None:intergenic |
TGGAAGTACAGGCTTGCCTA+AGG | 0.592424 | 3.2:+75000880 | MS.gene045073:CDS |
TGTTGGAGTTGCGGAAGAGG+AGG | 0.592784 | 3.2:-74998729 | None:intergenic |
CATGGAGAATATGTGTCCCT+GGG | 0.602792 | 3.2:+75007256 | MS.gene045073:CDS |
GAGCAGATGCGGCATCAGAT+GGG | 0.603021 | 3.2:-75000745 | None:intergenic |
GACATAGTTAAACTGCAGCA+TGG | 0.605290 | 3.2:+75007238 | MS.gene045073:CDS |
TTAATCGACTGGCCTGAAGG+TGG | 0.607384 | 3.2:+75004651 | MS.gene045073:CDS |
GAGGTTACAACTGTGATTTG+TGG | 0.608937 | 3.2:+75000641 | MS.gene045073:CDS |
CCGTTAACTTCACTCTGGGA+AGG | 0.609584 | 3.2:+74998829 | MS.gene045073:CDS |
GCAGTTATAATGTACACAAG+TGG | 0.611172 | 3.2:+75000860 | MS.gene045073:CDS |
CAAAGAAGAAACAGTGAAGG+AGG | 0.611493 | 3.2:+75007516 | MS.gene045073:CDS |
AAATACCCAAGAGTGACACT+TGG | 0.612420 | 3.2:-75004726 | None:intergenic |
AGGTCAAGCATATGGTCTCA+CGG | 0.613030 | 3.2:+75003420 | MS.gene045073:CDS |
TGCATTGATGCCAACTGTGT+TGG | 0.613469 | 3.2:+75001429 | MS.gene045073:CDS |
GGCCAGTCTCAGGAGTCCAT+GGG | 0.614285 | 3.2:-75008256 | None:intergenic |
TGCAAAGGGAGGATTATCAA+AGG | 0.615510 | 3.2:+75001596 | MS.gene045073:CDS |
TCAATGGGTTACGTATGGGA+AGG | 0.616385 | 3.2:+74998996 | MS.gene045073:CDS |
GGAATGAGGTGGTTCTACAC+TGG | 0.617625 | 3.2:+75007160 | MS.gene045073:CDS |
ACTACCTTAACATATGTGGA+AGG | 0.619062 | 3.2:-75003511 | None:intergenic |
GGTACAGCTACCAACACAGT+TGG | 0.622382 | 3.2:-75001439 | None:intergenic |
TCACGGAGACTTGTGCTGGT+GGG | 0.623476 | 3.2:+75003437 | MS.gene045073:CDS |
CACAGTTGGCATCAATGCAG+TGG | 0.624128 | 3.2:-75001425 | None:intergenic |
ATATCTAGCATACTTACCAA+TGG | 0.624262 | 3.2:+75001172 | MS.gene045073:CDS |
GATGCCGCATCTGCTCAGCA+TGG | 0.624263 | 3.2:+75000752 | MS.gene045073:CDS |
TATTCTTGAATTAATAGCTG+AGG | 0.625070 | 3.2:+75001199 | MS.gene045073:CDS |
AAAGACAAGAGAGTCTTGCA+AGG | 0.633949 | 3.2:+75004761 | MS.gene045073:CDS |
GCTGTAAAGGTTGATGAACG+GGG | 0.640469 | 3.2:+75007139 | MS.gene045073:intron |
TCCAACAACCGCAAACGCCG+CGG | 0.640799 | 3.2:+74998745 | MS.gene045073:CDS |
CAGCAAAGAAGAAACAGTGA+AGG | 0.640861 | 3.2:+75007513 | MS.gene045073:CDS |
CTTTGTGAGTCACCAGAAAG+GGG | 0.655656 | 3.2:-75001777 | None:intergenic |
AATCATGATAGATTGTTACT+CGG | 0.656134 | 3.2:+74998895 | MS.gene045073:CDS |
TCTAACCGATACATCAAACA+AGG | 0.656429 | 3.2:+75001378 | MS.gene045073:CDS |
TTGATTTAGCCTATGCACGA+AGG | 0.657974 | 3.2:+75001625 | MS.gene045073:CDS |
ACTGCAACATCAGCTGAAAG+GGG | 0.666737 | 3.2:-75000842 | None:intergenic |
GTGCATGCATACCTTTCCCA+GGG | 0.668654 | 3.2:-75007272 | None:intergenic |
TGGTAGAGAAAACCCTATCG+AGG | 0.672136 | 3.2:+75000811 | MS.gene045073:CDS |
GGAAGGCGTGACGACACTCG+CGG | 0.672398 | 3.2:+74998846 | MS.gene045073:CDS |
CGGAAGAGGAGGATGACGAG+AGG | 0.672962 | 3.2:-74998718 | None:intergenic |
TGGTTCTACACTGGTGACGT+AGG | 0.683274 | 3.2:+75007169 | MS.gene045073:CDS |
CCAATTACTATTTCACCACG+AGG | 0.684364 | 3.2:-75004699 | None:intergenic |
TGACGTAGGTAGATTTCATG+CGG | 0.690923 | 3.2:+75007183 | MS.gene045073:CDS |
GGACAACATTATGTTGCATG+CGG | 0.691477 | 3.2:+75007384 | MS.gene045073:CDS |
CAGGGTGTGATGATGACACA+TGG | 0.701230 | 3.2:+75001086 | MS.gene045073:intron |
ACTGACTCACCGATGCCTCG+TGG | 0.702074 | 3.2:+75004684 | MS.gene045073:CDS |
ATACAGGTAAATGCAAAGGG+AGG | 0.708230 | 3.2:+75001585 | MS.gene045073:intron |
ACATAATGTTGTCCACAAAG+GGG | 0.710014 | 3.2:-75007375 | None:intergenic |
TTGATGAACGGGGAATGAGG+TGG | 0.714142 | 3.2:+75007149 | MS.gene045073:CDS |
GGATGACGAGAGGAACGATG+AGG | 0.715004 | 3.2:-74998708 | None:intergenic |
TTAACGGAGATGTGACGCGG+TGG | 0.729075 | 3.2:-74998813 | None:intergenic |
AAGTTAACGGAGATGTGACG+CGG | 0.733202 | 3.2:-74998816 | None:intergenic |
AAGGTCCAAGCAATTCTGGG+TGG | 0.739493 | 3.2:+75001723 | MS.gene045073:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 74998688 | 75008361 | 74998688 | ID=MS.gene045073 |
chr3.2 | mRNA | 74998688 | 75008361 | 74998688 | ID=MS.gene045073.t1;Parent=MS.gene045073 |
chr3.2 | exon | 74998688 | 74999131 | 74998688 | ID=MS.gene045073.t1.exon1;Parent=MS.gene045073.t1 |
chr3.2 | CDS | 74998688 | 74999131 | 74998688 | ID=cds.MS.gene045073.t1;Parent=MS.gene045073.t1 |
chr3.2 | exon | 74999243 | 74999323 | 74999243 | ID=MS.gene045073.t1.exon2;Parent=MS.gene045073.t1 |
chr3.2 | CDS | 74999243 | 74999323 | 74999243 | ID=cds.MS.gene045073.t1;Parent=MS.gene045073.t1 |
chr3.2 | exon | 75000638 | 75000901 | 75000638 | ID=MS.gene045073.t1.exon3;Parent=MS.gene045073.t1 |
chr3.2 | CDS | 75000638 | 75000901 | 75000638 | ID=cds.MS.gene045073.t1;Parent=MS.gene045073.t1 |
chr3.2 | exon | 75001089 | 75001220 | 75001089 | ID=MS.gene045073.t1.exon4;Parent=MS.gene045073.t1 |
chr3.2 | CDS | 75001089 | 75001220 | 75001089 | ID=cds.MS.gene045073.t1;Parent=MS.gene045073.t1 |
chr3.2 | exon | 75001328 | 75001501 | 75001328 | ID=MS.gene045073.t1.exon5;Parent=MS.gene045073.t1 |
chr3.2 | CDS | 75001328 | 75001501 | 75001328 | ID=cds.MS.gene045073.t1;Parent=MS.gene045073.t1 |
chr3.2 | exon | 75001591 | 75001820 | 75001591 | ID=MS.gene045073.t1.exon6;Parent=MS.gene045073.t1 |
chr3.2 | CDS | 75001591 | 75001820 | 75001591 | ID=cds.MS.gene045073.t1;Parent=MS.gene045073.t1 |
chr3.2 | exon | 75003411 | 75003528 | 75003411 | ID=MS.gene045073.t1.exon7;Parent=MS.gene045073.t1 |
chr3.2 | CDS | 75003411 | 75003528 | 75003411 | ID=cds.MS.gene045073.t1;Parent=MS.gene045073.t1 |
chr3.2 | exon | 75004651 | 75004782 | 75004651 | ID=MS.gene045073.t1.exon8;Parent=MS.gene045073.t1 |
chr3.2 | CDS | 75004651 | 75004782 | 75004651 | ID=cds.MS.gene045073.t1;Parent=MS.gene045073.t1 |
chr3.2 | exon | 75007148 | 75007282 | 75007148 | ID=MS.gene045073.t1.exon9;Parent=MS.gene045073.t1 |
chr3.2 | CDS | 75007148 | 75007282 | 75007148 | ID=cds.MS.gene045073.t1;Parent=MS.gene045073.t1 |
chr3.2 | exon | 75007352 | 75007558 | 75007352 | ID=MS.gene045073.t1.exon10;Parent=MS.gene045073.t1 |
chr3.2 | CDS | 75007352 | 75007558 | 75007352 | ID=cds.MS.gene045073.t1;Parent=MS.gene045073.t1 |
chr3.2 | exon | 75008194 | 75008361 | 75008194 | ID=MS.gene045073.t1.exon11;Parent=MS.gene045073.t1 |
chr3.2 | CDS | 75008194 | 75008361 | 75008194 | ID=cds.MS.gene045073.t1;Parent=MS.gene045073.t1 |
Gene Sequence |
Protein sequence |