AlfalfaGEDB | MS.gene050487

M. sativa cultivar XinJiangDaYe / MS.gene050487

KEGG: K08819
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050487.t1	XP_003626368.1	94.6	569	16	3	1	554	1	569	5.60E-307	1062.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050487.t1	Q9ZVM9	74.4	508	114	6	55	554	73	572	8.6e-224	777.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050487.t1	G7L0R5	94.6	569	16	3	1	554	1	569	4.0e-307	1062.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050485	MS.gene050487	0.872133	4.02E-67	-1.69E-46
MS.gene050487	MS.gene29278	0.946511	4.02E-105	-1.69E-46
MS.gene050487	MS.gene29892	0.936889	8.42E-98	-1.69E-46
MS.gene050487	MS.gene29893	0.846783	1.75E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene016742	MS.gene050487	PPI
MS.gene016743	MS.gene050487	PPI
MS.gene050487	MS.gene016758	PPI
MS.gene050487	MS.gene015458	PPI
MS.gene050487	MS.gene070511	PPI
MS.gene050487	MS.gene057884	PPI
MS.gene050487	MS.gene057883	PPI
MS.gene050487	MS.gene025787	PPI
MS.gene050487	MS.gene070492	PPI
MS.gene050487	MS.gene67840	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene050487.t1	MTR_7g114300	94.552	569	16	3	1	554	1	569	1097
MS.gene050487.t1	MTR_7g114300	95.043	464	16	2	1	457	1	464	904
MS.gene050487.t1	MTR_1g081870	78.559	569	100	5	1	547	1	569	871
MS.gene050487.t1	MTR_2g020210	71.322	537	150	3	1	534	1	536	804
MS.gene050487.t1	MTR_4g118780	68.784	551	151	4	1	539	1	542	783
MS.gene050487.t1	MTR_7g114300	94.656	393	12	3	1	384	1	393	757
MS.gene050487.t1	MTR_7g114300	95.116	389	12	2	1	382	1	389	757
MS.gene050487.t1	MTR_3g098760	62.278	562	189	8	1	552	1	549	694
MS.gene050487.t1	MTR_8g099770	65.503	487	153	7	1	484	1	475	648
MS.gene050487.t1	MTR_2g085200	69.070	430	128	3	57	485	91	516	629

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene050487.t1	AT1G54610	67.814	581	151	9	1	554	1	572	790
MS.gene050487.t1	AT1G54610	67.814	581	151	9	1	554	1	572	790
MS.gene050487.t1	AT1G54610	67.814	581	151	9	1	554	1	572	790
MS.gene050487.t1	AT3G05050	65.809	544	179	3	14	554	54	593	701
MS.gene050487.t1	AT3G05050	65.809	544	179	3	14	554	54	593	701
MS.gene050487.t1	AT3G05050	65.809	544	179	3	14	554	54	593	701
MS.gene050487.t1	AT5G50860	61.355	502	177	6	1	485	1	502	636
MS.gene050487.t1	AT1G53050	65.589	433	140	3	66	494	100	527	609
MS.gene050487.t1	AT1G53050	65.589	433	140	3	66	494	100	527	609
MS.gene050487.t1	AT5G50860	59.754	487	174	7	1	465	1	487	593

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Find 153 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACCAAATACAAACTAC+AGG	0.536639	7.2:-3044053	None:intergenic
AAAGAAATACACTGCAGGAG+AGG	0.622485	7.2:+3047676	MS.gene050487:CDS
AAAGACGGGACGATGAAGTG+AGG	0.671385	7.2:+3046113	MS.gene050487:CDS
AAAGCTAAAGACTCCATGAC+TGG	0.583409	7.2:+3043887	MS.gene050487:CDS
AAATACATCCAGCACTCCAG+AGG	0.662079	7.2:-3044507	None:intergenic
AACCACATATACCTATTCAA+AGG	0.560859	7.2:+3047592	MS.gene050487:CDS
AACCCTTGTTTGACGAGGCT+TGG	0.388971	7.2:-3043462	None:intergenic
AACCTTCTTATTGACAATGA+AGG	0.443815	7.2:+3044343	MS.gene050487:CDS
AACCTTGTTCCTGTTGGTTT+GGG	0.262433	7.2:-3043491	None:intergenic
AAGAAATGGATGCTAAAAGA+CGG	0.607909	7.2:+3046098	MS.gene050487:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACACCAAATACAAACTAC+AGG	-	chr7.2:3044056-3044075	None:intergenic	30.0%
AACCACATATACCTATTCAA+AGG	+	chr7.2:3047592-3047611	MS.gene050487:CDS	30.0%
AACCTTCTTATTGACAATGA+AGG	+	chr7.2:3044343-3044362	MS.gene050487:CDS	30.0%
AAGAAATGGATGCTAAAAGA+CGG	+	chr7.2:3046098-3046117	MS.gene050487:CDS	30.0%
AAGATTGTGGTTAAGGTTAT+AGG	-	chr7.2:3045420-3045439	None:intergenic	30.0%
AATACTTCCAATATGCAGAA+TGG	-	chr7.2:3046161-3046180	None:intergenic	30.0%
AATTGTGAGGACTAAATGTA+GGG	+	chr7.2:3046243-3046262	MS.gene050487:intron	30.0%
AGATAAACACAGCTTAATAC+AGG	-	chr7.2:3045650-3045669	None:intergenic	30.0%
AGATTGTGGTTAAGGTTATA+GGG	-	chr7.2:3045419-3045438	None:intergenic	30.0%
AGGTTTAAACAATGTAGCAT+TGG	-	chr7.2:3045039-3045058	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	3043442	3047745	3043442	ID=MS.gene050487
chr7.2	mRNA	3043442	3047745	3043442	ID=MS.gene050487.t1;Parent=MS.gene050487
chr7.2	exon	3043442	3043756	3043442	ID=MS.gene050487.t1.exon1;Parent=MS.gene050487.t1
chr7.2	CDS	3043442	3043756	3043442	ID=cds.MS.gene050487.t1;Parent=MS.gene050487.t1
chr7.2	exon	3043857	3044141	3043857	ID=MS.gene050487.t1.exon2;Parent=MS.gene050487.t1
chr7.2	CDS	3043857	3044141	3043857	ID=cds.MS.gene050487.t1;Parent=MS.gene050487.t1
chr7.2	exon	3044259	3044576	3044259	ID=MS.gene050487.t1.exon3;Parent=MS.gene050487.t1
chr7.2	CDS	3044259	3044576	3044259	ID=cds.MS.gene050487.t1;Parent=MS.gene050487.t1
chr7.2	exon	3044963	3045190	3044963	ID=MS.gene050487.t1.exon4;Parent=MS.gene050487.t1
chr7.2	CDS	3044963	3045190	3044963	ID=cds.MS.gene050487.t1;Parent=MS.gene050487.t1
chr7.2	exon	3046037	3046137	3046037	ID=MS.gene050487.t1.exon5;Parent=MS.gene050487.t1
chr7.2	CDS	3046037	3046137	3046037	ID=cds.MS.gene050487.t1;Parent=MS.gene050487.t1
chr7.2	exon	3046520	3046637	3046520	ID=MS.gene050487.t1.exon6;Parent=MS.gene050487.t1
chr7.2	CDS	3046520	3046637	3046520	ID=cds.MS.gene050487.t1;Parent=MS.gene050487.t1
chr7.2	exon	3047446	3047745	3047446	ID=MS.gene050487.t1.exon7;Parent=MS.gene050487.t1
chr7.2	CDS	3047446	3047745	3047446	ID=cds.MS.gene050487.t1;Parent=MS.gene050487.t1

Gene Sequence

>MS.gene050487

ATGGGATGTGTGATTGGTCGCCAAGCCTCGTCAAACAAGGGTTCAGGTGCCCAAACCAACAGGAACAAGGTTGATGAAGCTTCTGCGGCGGCGGAGAAGAATGTGGTAGAGATTGAGAATGATGAGAAGAAGAGTGATGATAGGGTTCAACATTCTCGAAGATCAAAGCCAAATCCAAGGCTAAGTAATCCACCTAAGCATTTACATGGTGAACAGGTTGCTGCTGGATGGCCATCTTGGCTCACTGCTGTTTGTGGAGAAGCTCTCACTGGCTGGATTCCGCGAAAGGCCGACACATTTGAAAAAATCGATAAGGTAGGTTGAATTAACTTTTTGTTGCTTATAAGAGGAACTAACTGATGTAGTGTAGAATCTCAAATTAAGTTCTGACTATGGTTCTTGTCTTTTATTTTAGATTGGGCAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACTCCATGACTGGTAAAGTTGTTGCTCTCAAGAAGGTTCGATTTGATAATTTGGAACCCGAGAGCATTAAATTCATGGCTAGAGAGATTATTATTCTGCGAAGGTTGGATCATCCAAATGTTATTAAGTTGCAAGGTTTAGTTACATCAAGGATGTCCTGTAGTTTGTATTTGGTGTTTGATTACATGGAGCATGATTTAGCCGGACTTGCTGCAAGTCCGGTAATCAGGTTTACAGAGTCTCAGGTTAGACCAGGCTTGCCTTGAACTAATTATTAATAAGTTGTTTATTTGGTATTTGGTTCATTTTCTTTTCAAGTTGTAGTATTTGATTTTTTTTAAAAATTGTACCTTCAACTGCAGATAAAATGTTACATGAATCAGCTGCTATCGGGACTTGAGCATTGTCATAACCGTCGTGTACTTCACCGTGATATTAAAGGATCAAACCTTCTTATTGACAATGAAGGAATACTTAAGATTGCTGACTTTGGCTTGGCATCCTTTTTTGATCCAAACCATAGGCATCCCATGACTAGTCGTGTAGTAACCCTTTGGTATCGGCCTCCTGAGTTGCTTCTTGGGGCCACTGATTACGGTGTGGGTATAGACCTCTGGAGTGCTGGATGTATTTTAGGAGAGTTATTGGTCGGGAAACCAATTATGCCTGGCCGTACAGAGGTGAAAACTTACATATCTCGTTTTGTTGGCTTTTAGGATTTTTCATTTCCCTTTTTTTTCTGTGCACAACTATCTAAGTCGCAGTAATCTCGGTCTAATTATCGTTTGCATTTATGAGGATATAGAGATGCTAGTGATTATAATGATATTTAATAGAAATTTCATTTCGTCTGCCTAAATATGTTGACTACCAAATTACGTTGTCCACAATGTACACACAATCATTATGTTTATGGTATATTTCCCTTTTTAGTGGTATACTAGATCGTATGTTTAGTTATATCCTATCTCATGACTCATGTGTAGTTTGTAAGAATTTTATATTTATATAGCATAGCAAGTTATTCAAAATCACATATAACTTATCTGACTTCTTTCTTGCATAGGTGGAGCAACTGCATAAGATATACAAACTATGCGGTTCACCTTCTGATGAATACTGGAAGAAGTCAAAGTTGGCCAATGCTACATTGTTTAAACCTCGAGAGCCATACAAGAGATGCATAAGAGAGACATTCAAAGGTTTTCCACTGTCTGCTCTACCCCTTATTGATAAACTTCTTGCGATTGATCCTGTAGAACGGGAAACCGCCTCAGATGCTTTAAGAAGTGAGGTGGGTTTTTTTCGAATTTCCCAGCTTTGTAGTCGTACCACTTAGAGTCTTTGACTGATATATTGTCCGTGCATATAGATACCCTTAAAGTATATGCATACTTGAAGATCTGTTTGTTGATACGTATGATAAGCTGCATTTTGAGCTAAATGAAGCCATAAAACACATGTGTGAAGCTCTGCTTTGTAATACGAATGGTTAGACTTCGTATTTAGCTGCATGAAGCCCTATAACCTTAACCACAATCTTGAAGCCCTATAATTTTCAGGCTATATGATCCTTAACCACAATTTTAGCCAGTGGATATTCTGATCTTTACATTAAATCTTCTTAGAGCCTGGTTCTTTGGCTTCTTGTTTTGGATATCCTATACTAACAATGTGCTTGACCGTTATAACCTGCTGCTATAGGAGAACTAGTCAGTCATATCTTGAATGTAGTGTTAGAGGTGATGCTCCTGTATTAAGCTGTGTTTATCTCAACCACATGAATCCCATCTTGGAATAGATTTAGCAAATTTTTGGTGTTTTCTTTTTAATTAAAATTAAAAATAAATGTGACTCGTACATTTTTTTTTAAAAAAAATTGAAGAGGGGGGAAATTATTTTTAATAGAGTGGCACTATTGCCCATTTTACAACCGTCTCCAAGGAAGTTAGAACTATGTCCCTTGAGGTTACAAGATCAAGCTCTTACCAGTGAGTCGACACTTCATAGACAGACCAAATCAATTTAATATTGGCTTATCCATGTATGAATTTATAAAATAAAACTGTCTTGAATCTGATTCAGGTGTTATCCCCGTTGAGTTACAACTACTTTGCTTGTCTGCTCCTACATTTTGCAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATACCCTCCAAGCAAAGAAATGGATGCTAAAAGACGGGACGATGAAGTGAGGAGGTATTTCTACTCTTAAGTTTCCATTCTGCATATTGGAAGTATTTGAATATATTTAAATAAGATATCATCTAGCGATTGGGAGGGAGAAAGTGTTAGGAAGATATCAATTGTGAGGACTAAATGTAGGGTGTTGACCCGGATATTACCAAAAAAAATTATATTATTCAATGACAATTTTAACCTTCTGTTATTCAACAAATGTGCTCTTCCAACGGCCTTATAAATAACATAAACTCTACAGTCAAAACACACTCGATGACATTTATAGCAGTCATAAGTGAAAAGTTTTCCTTTTGTTTTGGGTAACGTCTTCTAGTCATGATTTATCCAACCTGATATGTTTGATCATCTCTAAGATACTTTTTTGTGTATAAATTTTCAGACAAAGAGCTGCAAGCAAAGCTCAGGTCAATGGCTCAAAGAAGCATCGTACGTGTGAACGTGCTATGAAAGCTATGCCTGCTCCCGAAGCCAATGCCGAGCTTCAATCCAATATTGATGTATGTTCTAACAAACTACTAATATTTCTAAGCTCTAGCATACTAGTGATGCTTTGTTTTATACAATTGCTATATACACGTGCTTTGAGCTTAAAGTCTTTAAGAATGCTTAAGGAATGAAAAGATTGAGACTAAGGGCCTCATTGGATTGGATTACTTGAGACATAAGTTTTGTGACTGTTTGGTGGAACTTATAAAGATAGCTTACGACTACTTTCAGCTTATTTTCATAAATTCTCCAAGATAGCTTTTGAAAACAACTTATAGCTTATATGAAAACAATTTAACTTCATTCTGTATTTTGATATAGAAATACCTTATACACAAGTGCTTATGCTATAATCTGCAAATAAGTTGTTTATCCAAACAGGGCCAAAGTAGAAAGACCGATTAGGATTTAGTCGCCAAACTTCCTCAATCCAACTCAAGTGTGGTAGATTATCAATGGACCTTAAGATATTTGAATTTGTCTTGAGTATTTTGAATTAAAGCGATTATTTTAGTTATCCTTTTTCTGAATGAGCTTAACTAAAAATGGTTTCCTACTTCTTAATTAGAAGCAGCTTGAGCCTCTCGTTTATCCTGGATTTCTTACAAATTAAATATCAAAATTCTCTTCTGTATTAATGCCTTTATGTTTTTCTGCATCTTTAGCTTCGTCTGTGCTTTGTTTAGAGATGAAATCTATCCTTTCACATACTTGTTTACTACTTTCTAACAATATAAGAAATTTGCATCTGCATGATTATGATATTGTGACTTAAAAGTAAAGTCAGTAAATTTGTTTGTGTCATTTCATGTGTAACAGAGAAGACGTCTAATTACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCACCTCATCAAGATGGACAACTTGGCTTTCCTTTGGGATCTTCGCATCATATTGATCCAGATACTATTCCTACCGATATATCTTTCACTTCAACCACATATACCTATTCAAAGGAACCATTCCAAGCATGGTCAGGTCCAATTGGCAATGCTGCCGATATTGGAGTGTCGAAGCGAAAGAAATACACTGCAGGAGAGGCGTGGGATTTATTAAAACCACATAAAGGAAAGGCAATTATAGCATAG

Protein sequence

>MS.gene050487.t1

MGCVIGRQASSNKGSGAQTNRNKVDEASAAAEKNVVEIENDEKKSDDRVQHSRRSKPNPRLSNPPKHLHGEQVAAGWPSWLTAVCGEALTGWIPRKADTFEKIDKIGQGTYSNVYKAKDSMTGKVVALKKVRFDNLEPESIKFMAREIIILRRLDHPNVIKLQGLVTSRMSCSLYLVFDYMEHDLAGLAASPVIRFTESQIKCYMNQLLSGLEHCHNRRVLHRDIKGSNLLIDNEGILKIADFGLASFFDPNHRHPMTSRVVTLWYRPPELLLGATDYGVGIDLWSAGCILGELLVGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLANATLFKPREPYKRCIRETFKGFPLSALPLIDKLLAIDPVERETASDALRSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEVRRQRAASKAQVNGSKKHRTCERAMKAMPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDTIPTDISFTSTTYTYSKEPFQAWSGPIGNAADIGVSKRKKYTAGEAWDLLKPHKGKAIIA