AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053098

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053098.t1 MTR_6g004200 98.239 568 10 0 1 568 1 568 0.0 1147
MS.gene053098.t1 MTR_3g099190 26.552 580 357 20 6 553 80 622 1.07e-40 157
MS.gene053098.t1 MTR_2g027220 25.376 532 352 14 42 553 100 606 3.89e-39 152
MS.gene053098.t1 MTR_2g013120 25.000 492 327 12 6 480 84 550 2.52e-36 144
MS.gene053098.t1 MTR_2g015560 22.441 508 312 21 11 482 27 488 2.16e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053098.t1 AT5G17380 78.799 566 114 3 4 568 12 572 0.0 919
MS.gene053098.t1 AT3G48560 26.069 491 323 11 6 480 99 565 2.79e-39 153

Find 182 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGATGCTATTTCGGAATT+TGG 0.168057 6.2:+198382 MS.gene053098:CDS
TTGAATTGGCTGCTTCATTT+TGG 0.184186 6.2:+198079 MS.gene053098:CDS
TCGACCTGGTGGTGTTTATT+TGG 0.219372 6.2:+197691 MS.gene053098:CDS
TAGGTTGGATGCTGGTACTT+GGG 0.254929 6.2:+198492 MS.gene053098:CDS
GAGAGGCCGTTGATTGTGTT+TGG 0.282927 6.2:+197872 MS.gene053098:CDS
AGGACCTGTGCGACGCAATT+AGG 0.289625 6.2:-197650 None:intergenic
GTTGCTGTTGAAGGGGATTC+TGG 0.306147 6.2:+198580 MS.gene053098:CDS
CACCGCGACCGACATCGTTT+TGG 0.308872 6.2:-197547 None:intergenic
TGGTGATGCTAAAGAAGTTT+TGG 0.310510 6.2:+198195 MS.gene053098:CDS
GTTGAAGGGGATTCTGGATA+TGG 0.312883 6.2:+198586 MS.gene053098:CDS
TTCAACAATGGTGGTGTATA+TGG 0.321717 6.2:+200172 MS.gene053098:CDS
CCCTTTCTTCCGACTCCAAT+GGG 0.325610 6.2:+197959 MS.gene053098:CDS
TCCGGTCCCGGTTGCGTTCA+CGG 0.331596 6.2:+197458 MS.gene053098:CDS
TGAAGATGAATTGAAGAAAT+TGG 0.345002 6.2:+197919 MS.gene053098:CDS
CGCCTTGTCGTTGCTGTTGA+AGG 0.349466 6.2:+198571 MS.gene053098:CDS
TTCACATCCTTAGACCATTT+CGG 0.350348 6.2:-198109 None:intergenic
GGCGAGACCGTGAACGCAAC+CGG 0.352550 6.2:-197465 None:intergenic
GTGGGAAGGGTTATCTTGTT+GGG 0.362279 6.2:+200302 MS.gene053098:CDS
CTAGGTTGGATGCTGGTACT+TGG 0.365720 6.2:+198491 MS.gene053098:CDS
TGCGACGCAATTAGGAATTT+CGG 0.368641 6.2:-197642 None:intergenic
GGTGGGAAGGGTTATCTTGT+TGG 0.370731 6.2:+200301 MS.gene053098:CDS
GATTATCAGAGATGCTATTT+CGG 0.371238 6.2:+198375 MS.gene053098:CDS
AGAGGCCGTTGATTGTGTTT+GGG 0.386929 6.2:+197873 MS.gene053098:CDS
GCGGCTAGGTCACTTGCTAT+TGG 0.399276 6.2:+198022 MS.gene053098:CDS
CACACTATGATGGAAGCTTT+TGG 0.408547 6.2:+200280 MS.gene053098:CDS
GGTTAAAAGCGATTCAGCTT+CGG 0.413715 6.2:-197753 None:intergenic
AAGAAATTGGTGGAAAGGAC+AGG 0.415680 6.2:+197932 MS.gene053098:CDS
TTCCTCACCGTCTCCGGTCC+CGG 0.420654 6.2:+197446 MS.gene053098:CDS
AGAGCTGACTTTAGTTCATC+AGG 0.420866 6.2:-200328 None:intergenic
GCTTGGGGAGCACTCATCCA+TGG 0.422593 6.2:+198254 MS.gene053098:CDS
GTAAGCGGAGGCGGCGTAAC+CGG 0.424269 6.2:-197396 None:intergenic
ATAGTGTGGTACCCTGCATT+TGG 0.425828 6.2:-200265 None:intergenic
GCGTGTGGCGAGTGAAGTTA+CGG 0.427262 6.2:-197324 None:intergenic
AGCTGTTTCGCTTCTGAGAA+AGG 0.431667 6.2:+197847 MS.gene053098:CDS
GGAAGAGCCGAAATGGTCTA+AGG 0.431832 6.2:+198102 MS.gene053098:CDS
GGCATCTTCCTCACCGTCTC+CGG 0.433782 6.2:+197440 MS.gene053098:CDS
AATGGGGAAGGGATTGTTGC+CGG 0.440749 6.2:+197976 MS.gene053098:CDS
ACATCCTTTGTTCCAAATGC+AGG 0.441014 6.2:+200253 MS.gene053098:CDS
ACCGTGAACGCAACCGGGAC+CGG 0.448183 6.2:-197459 None:intergenic
GGATGTGAAGTTTGTGTTGG+TGG 0.452229 6.2:+198123 MS.gene053098:CDS
TCAGAAACCACCACAGGAGC+TGG 0.456175 6.2:-198412 None:intergenic
TCCCTTTCTTCCGACTCCAA+TGG 0.456521 6.2:+197958 MS.gene053098:CDS
GTTTCTCTTCCGCGCTTCTA+CGG 0.457373 6.2:-200201 None:intergenic
CTTGGGGAGCACTCATCCAT+GGG 0.462647 6.2:+198255 MS.gene053098:CDS
GCCTTGTCGTTGCTGTTGAA+GGG 0.464496 6.2:+198572 MS.gene053098:CDS
CGTTGGCTGCCTCTGCGGCT+AGG 0.468646 6.2:+198008 MS.gene053098:CDS
GGTTACGCCGCCTCCGCTTA+CGG 0.470387 6.2:+197398 MS.gene053098:CDS
CCCATTGGAGTCGGAAGAAA+GGG 0.471741 6.2:-197959 None:intergenic
AGGTTGGATGCTGGTACTTG+GGG 0.472904 6.2:+198493 MS.gene053098:CDS
CCCCATTGGAGTCGGAAGAA+AGG 0.474099 6.2:-197960 None:intergenic
TGATTGGTGCGAGGTTGAAT+TGG 0.474694 6.2:+198065 MS.gene053098:CDS
CTTTCTTTCAGACATTGGTT+CGG 0.475353 6.2:+200122 MS.gene053098:intron
GGAACAAAGGATGTCGGAGC+GGG 0.475357 6.2:-200244 None:intergenic
GCTAAATCCTTCTCTCAATT+CGG 0.476034 6.2:+197269 MS.gene053098:CDS
TGGCCTACTGTCATGATCTC+AGG 0.478594 6.2:+197515 MS.gene053098:CDS
ATGGTAACATTTATGACGGC+TGG 0.480846 6.2:-200376 None:intergenic
TTCGGCGTCCAACACATGTT+CGG 0.481163 6.2:+197287 MS.gene053098:CDS
CCGTTGATTGTGTTTGGGAA+AGG 0.481200 6.2:+197878 MS.gene053098:CDS
GAGGTAGCCGTAAGCGGAGG+CGG 0.483006 6.2:-197405 None:intergenic
TGTGAAGATGGAGGCTCAAT+TGG 0.483919 6.2:+198312 MS.gene053098:CDS
GCAGCCAACGGATGATCATC+CGG 0.484451 6.2:-197995 None:intergenic
GCTCCTGTGGTGGTTTCTGA+AGG 0.488005 6.2:+198415 MS.gene053098:CDS
GGTGAGGAAGATGCCGGGAC+GGG 0.489548 6.2:-197432 None:intergenic
CTTCCGACTCCAATGGGGAA+GGG 0.490349 6.2:+197965 MS.gene053098:CDS
AGGAATTTCGGAGATATGCT+TGG 0.490578 6.2:-197630 None:intergenic
GACAGTAGGCCATGTGTTAG+TGG 0.494295 6.2:-197504 None:intergenic
CTCGAAATAGCTTCCACCCA+TGG 0.495380 6.2:-198271 None:intergenic
CGTGTGGCGAGTGAAGTTAC+GGG 0.496769 6.2:-197323 None:intergenic
CCCTATGCCGGTTCTGAGAG+TGG 0.502759 6.2:+200403 MS.gene053098:CDS
AATTCCTAATTGCGTCGCAC+AGG 0.506543 6.2:+197646 MS.gene053098:CDS
AGTGGTGCCGTTGGAGAGAC+CGG 0.508324 6.2:-197486 None:intergenic
GAGGAAGATGCCGGGACGGG+AGG 0.516089 6.2:-197429 None:intergenic
GCATCTCTGATAATCCTCAT+TGG 0.517324 6.2:-198367 None:intergenic
ACAGCAACGACAAGGCGATC+AGG 0.517340 6.2:-198565 None:intergenic
TCTCAGAATCTTTCTCTGCT+AGG 0.519344 6.2:+200350 MS.gene053098:CDS
GAAGGACAATGGTGTGAAGA+TGG 0.519995 6.2:+198300 MS.gene053098:CDS
AACGCAACCGGGACCGGAGA+CGG 0.521595 6.2:-197453 None:intergenic
AATTCAATGGGAGAAATTGA+CGG 0.523138 6.2:+197233 None:intergenic
GGCAACAATCCCTTCCCCAT+TGG 0.524820 6.2:-197974 None:intergenic
AACCAAAACGATGTCGGTCG+CGG 0.525927 6.2:+197545 MS.gene053098:CDS
AATTGAAGAAATTGGTGGAA+AGG 0.526177 6.2:+197927 MS.gene053098:CDS
CCAGCATCCAACCTAGTCCT+TGG 0.526297 6.2:-198484 None:intergenic
CCTTGTCGTTGCTGTTGAAG+GGG 0.527216 6.2:+198573 MS.gene053098:CDS
CATCCTCCCACTCTCAGAAC+CGG 0.529633 6.2:-200410 None:intergenic
AATTCCATTGCGAATCGACC+TGG 0.530482 6.2:+197677 MS.gene053098:CDS
GTTACCATTGATCCCTATGC+CGG 0.530592 6.2:+200391 MS.gene053098:CDS
GCCACACGCGCCGTCTCTCT+CGG 0.531512 6.2:+197338 MS.gene053098:CDS
TGGATATGGATTTAGTGCTA+TGG 0.537673 6.2:+198600 MS.gene053098:CDS
GCCGAGAGAGACGGCGCGTG+TGG 0.538337 6.2:-197339 None:intergenic
TGGTCTTGGTTATTGTATTG+CGG 0.538505 6.2:+198528 MS.gene053098:CDS
TGTGACGTGGCGATTGTGAT+TGG 0.538530 6.2:+198049 MS.gene053098:CDS
TCGATCTGTGTTGGTTCAGA+AGG 0.541457 6.2:+198459 MS.gene053098:CDS
CCCACTCTCAGAACCGGCAT+AGG 0.547084 6.2:-200404 None:intergenic
CGGTGAGGAAGATGCCGGGA+CGG 0.553454 6.2:-197433 None:intergenic
GAAACGGATGCCGAGAGAGA+CGG 0.553705 6.2:-197348 None:intergenic
CCACTCTCAGAACCGGCATA+GGG 0.554364 6.2:-200403 None:intergenic
TAAGGATGTGAAGTTTGTGT+TGG 0.554761 6.2:+198120 MS.gene053098:CDS
GGCTACCTCACCTCCCGTCC+CGG 0.554854 6.2:+197419 MS.gene053098:CDS
TGCAGGGTACCACACTATGA+TGG 0.554969 6.2:+200270 MS.gene053098:CDS
AGATGCCGGGACGGGAGGTG+AGG 0.556090 6.2:-197424 None:intergenic
CGACGACGCCGAACATGTGT+TGG 0.557328 6.2:-197295 None:intergenic
GAAGGAGCCAAGGACTAGGT+TGG 0.558905 6.2:+198477 MS.gene053098:CDS
GGTTGCGTTCACGGTCTCGC+CGG 0.559164 6.2:+197467 MS.gene053098:CDS
TTCAGAAGGAGCCAAGGACT+AGG 0.561809 6.2:+198473 MS.gene053098:CDS
AGAACCGGCATAGGGATCAA+TGG 0.563367 6.2:-200395 None:intergenic
TCTTCCGACTCCAATGGGGA+AGG 0.563603 6.2:+197964 MS.gene053098:CDS
CAACACATGTTCGGCGTCGT+CGG 0.565293 6.2:+197296 MS.gene053098:CDS
GGATGTTGGTCGATCTGTGT+TGG 0.566745 6.2:+198450 MS.gene053098:CDS
GCGAGACCGTGAACGCAACC+GGG 0.568089 6.2:-197464 None:intergenic
ATTTAGTGCTATGGAAGTTG+AGG 0.568805 6.2:+198609 MS.gene053098:CDS
CCTATGCCGGTTCTGAGAGT+GGG 0.571561 6.2:+200404 MS.gene053098:CDS
AGATGAATTGAAGAAATTGG+TGG 0.576890 6.2:+197922 MS.gene053098:CDS
GGTTGGATGCTGGTACTTGG+GGG 0.577192 6.2:+198494 MS.gene053098:CDS
CCAAGGACTAGGTTGGATGC+TGG 0.578727 6.2:+198484 MS.gene053098:CDS
AGCAAGTGACCTAGCCGCAG+AGG 0.579567 6.2:-198017 None:intergenic
TGAGTGCTCCCCAAGCAAAA+CGG 0.579880 6.2:-198247 None:intergenic
GATGCTATTTCGGAATTTGG+AGG 0.580533 6.2:+198385 MS.gene053098:CDS
GAGACGGTGAGGAAGATGCC+GGG 0.580765 6.2:-197437 None:intergenic
TGGAGGAAGTCCAGCTCCTG+TGG 0.581328 6.2:+198402 MS.gene053098:CDS
AGCGGAGGCGGCGTAACCGG+CGG 0.582285 6.2:-197393 None:intergenic
ATCAATGGTAACATTTATGA+CGG 0.582311 6.2:-200380 None:intergenic
GGTGAGGTAGCCGTAAGCGG+AGG 0.583067 6.2:-197408 None:intergenic
AGAAATTGGTGGAAAGGACA+GGG 0.584953 6.2:+197933 MS.gene053098:CDS
ACCACCAGGTCGATTCGCAA+TGG 0.585459 6.2:-197681 None:intergenic
CACAGATCGACCAACATCCA+TGG 0.588090 6.2:-198446 None:intergenic
AGGAAGTCCAGCTCCTGTGG+TGG 0.588129 6.2:+198405 MS.gene053098:CDS
TTGAAAACAATCACCACCAC+AGG 0.588388 6.2:-200154 None:intergenic
CATCCTTTGTTCCAAATGCA+GGG 0.589443 6.2:+200254 MS.gene053098:CDS
AACCGGCGGATTGTTCGTTG+TGG 0.592058 6.2:-197379 None:intergenic
CCTTTCCCAAACACAATCAA+CGG 0.595147 6.2:-197878 None:intergenic
TTCTGAAGGTGCTAATACCA+TGG 0.595296 6.2:+198429 MS.gene053098:CDS
AATCCCTTCCCCATTGGAGT+CGG 0.598920 6.2:-197968 None:intergenic
GGAGACGGTGAGGAAGATGC+CGG 0.599476 6.2:-197438 None:intergenic
CCATGTGTTAGTGGTGCCGT+TGG 0.601490 6.2:-197495 None:intergenic
AGCTATTTCGAGTAAAGTGA+AGG 0.602234 6.2:+198282 MS.gene053098:CDS
CCCCTTCAACAGCAACGACA+AGG 0.603202 6.2:-198573 None:intergenic
CGTTGTGGAAAGCGATGAAA+CGG 0.603488 6.2:-197364 None:intergenic
GGAGCGGGGTCCTCCTTGTG+AGG 0.604623 6.2:-200229 None:intergenic
GGAGGTGAGGTAGCCGTAAG+CGG 0.606197 6.2:-197411 None:intergenic
CTAGCCGCAGAGGCAGCCAA+CGG 0.612575 6.2:-198007 None:intergenic
TTGGACGCCGAATTGAGAGA+AGG 0.613367 6.2:-197276 None:intergenic
TTCCACAACGAACAATCCGC+CGG 0.614198 6.2:+197377 MS.gene053098:CDS
AGAGAAACATGGACCTCACA+AGG 0.617835 6.2:+200216 MS.gene053098:CDS
GATGGAGGCTCAATTGGCAA+AGG 0.622460 6.2:+198318 MS.gene053098:CDS
CAATCACCACCACAGGCAGT+TGG 0.622614 6.2:-200147 None:intergenic
AACCGGGACCGGAGACGGTG+AGG 0.622684 6.2:-197448 None:intergenic
TCTTGTAACCAAAACGATGT+CGG 0.622756 6.2:+197539 MS.gene053098:CDS
TGGAACAAAGGATGTCGGAG+CGG 0.622773 6.2:-200245 None:intergenic
TGTTGGTTCAGAAGGAGCCA+AGG 0.626040 6.2:+198467 MS.gene053098:CDS
GTTGCCGGATGATCATCCGT+TGG 0.630066 6.2:+197991 MS.gene053098:CDS
GCATTTGGAACAAAGGATGT+CGG 0.630283 6.2:-200250 None:intergenic
ATGCCGGTTCTGAGAGTGGG+AGG 0.630890 6.2:+200407 MS.gene053098:CDS
GGTCTCGCCGGTCTCTCCAA+CGG 0.631545 6.2:+197479 MS.gene053098:CDS
TCGAGTAAAGTGAAGGACAA+TGG 0.631645 6.2:+198289 MS.gene053098:CDS
CGCTTCTGAGAAAGGCGGAG+AGG 0.633700 6.2:+197855 MS.gene053098:CDS
TCCATTGCGAATCGACCTGG+TGG 0.646984 6.2:+197680 MS.gene053098:CDS
AGATCCAAATAAACACCACC+AGG 0.649375 6.2:-197695 None:intergenic
GAACCTGAGATCATGACAGT+AGG 0.653809 6.2:-197518 None:intergenic
CCAACGGCACCACTAACACA+TGG 0.655427 6.2:+197495 MS.gene053098:CDS
AGAAGCGCGGAAGAGAAACA+TGG 0.658183 6.2:+200205 MS.gene053098:CDS
GGTGCTAATACCATGGATGT+TGG 0.661368 6.2:+198436 MS.gene053098:CDS
TGTGTTGGTGGATGTCAGCA+AGG 0.662866 6.2:+198135 MS.gene053098:CDS
TCATCCGTTGGCTGCCTCTG+CGG 0.665116 6.2:+198003 MS.gene053098:CDS
GCGATCAGGATAAGCGACAG+TGG 0.665456 6.2:-198551 None:intergenic
GAACAAAGGATGTCGGAGCG+GGG 0.667800 6.2:-200243 None:intergenic
GCACCTTCAGAAACCACCAC+AGG 0.667938 6.2:-198418 None:intergenic
TCGGTACCAACTGCCTGTGG+TGG 0.670360 6.2:+200141 MS.gene053098:CDS
CAAAAGCTTCCATCATAGTG+TGG 0.672720 6.2:-200279 None:intergenic
TGGTGGTGACCGTAGAAGCG+CGG 0.676748 6.2:+200192 MS.gene053098:CDS
GGGGAGCACTCATCCATGGG+TGG 0.677623 6.2:+198258 MS.gene053098:CDS
TGTTTCGCTTCTGAGAAAGG+CGG 0.679005 6.2:+197850 MS.gene053098:CDS
GTACCCTGCATTTGGAACAA+AGG 0.679208 6.2:-200257 None:intergenic
TGGCGATTGTGATTGGTGCG+AGG 0.681842 6.2:+198056 MS.gene053098:CDS
CCTTTCTTCCGACTCCAATG+GGG 0.685812 6.2:+197960 MS.gene053098:CDS
GGTTCGGTACCAACTGCCTG+TGG 0.691668 6.2:+200138 MS.gene053098:CDS
GATTCGCAATGGAATTAGCG+AGG 0.694165 6.2:-197670 None:intergenic
GGACAATGGTGTGAAGATGG+AGG 0.707741 6.2:+198303 MS.gene053098:CDS
AACAATGGTGGTGTATATGG+TGG 0.712302 6.2:+200175 MS.gene053098:CDS
GTGTGGCGAGTGAAGTTACG+GGG 0.713686 6.2:-197322 None:intergenic
GAAACATGGACCTCACAAGG+AGG 0.726765 6.2:+200219 MS.gene053098:CDS
TGCTATTGGAAAATGTGACG+TGG 0.744033 6.2:+198036 MS.gene053098:CDS
GAGAGAAGGATTTAGCAGCG+AGG 0.776384 6.2:-197262 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATTTGAAAAATAACA+AGG - chr6.2:199417-199436 None:intergenic 10.0%
!! TGAAAAAAAAAAAGAAAAAA+GGG + chr6.2:198805-198824 MS.gene053098:intron 10.0%
!! TTGAAAAAAAAAAAGAAAAA+AGG + chr6.2:198804-198823 MS.gene053098:intron 10.0%
!!! CATATTAGTTTATAAATTTT+TGG + chr6.2:199989-200008 MS.gene053098:intron 10.0%
!! TATAAACTAATATGAATGAA+TGG - chr6.2:199983-200002 None:intergenic 15.0%
!!! CTTGTTAAGAAATTTTTATA+AGG - chr6.2:199023-199042 None:intergenic 15.0%
!!! CTTTTTTTTTTTCAATTTCA+AGG - chr6.2:198799-198818 None:intergenic 15.0%
!!! TTGAAAAAAAAAAGGTTTTT+TGG + chr6.2:198899-198918 MS.gene053098:intron 15.0%
!! ATTCTTGTATTCATAAAATG+AGG - chr6.2:200075-200094 None:intergenic 20.0%
!! CCTTGAAATTGAAAAAAAAA+AGG + chr6.2:198796-198815 MS.gene053098:intron 20.0%
!!! AAAAAAGAAAAAAGGGTATT+TGG + chr6.2:198812-198831 MS.gene053098:intron 20.0%
!!! ACATCAGTAATTGATTTAAA+TGG - chr6.2:199523-199542 None:intergenic 20.0%
!!! CCTTTTTTTTTTCAATTTCA+AGG - chr6.2:198894-198913 None:intergenic 20.0%
!!! CTTAACAAGTTTGTTATTTT+GGG + chr6.2:199034-199053 MS.gene053098:intron 20.0%
!!! TCTTAACAAGTTTGTTATTT+TGG + chr6.2:199033-199052 MS.gene053098:intron 20.0%
! AAATTGAACAAAATGCTGTT+TGG + chr6.2:199636-199655 MS.gene053098:intron 25.0%
! AAGTAAAGACCTTAATAACA+AGG - chr6.2:199821-199840 None:intergenic 25.0%
! AATGCGATCTTATTCATATA+TGG + chr6.2:200027-200046 MS.gene053098:intron 25.0%
! ACATACACATATTAGATTTG+TGG + chr6.2:198991-199010 MS.gene053098:intron 25.0%
! ATATAACTTCTATAGTCTCA+GGG - chr6.2:199072-199091 None:intergenic 25.0%
! ATCAATGGTAACATTTATGA+CGG - chr6.2:200383-200402 None:intergenic 25.0%
! ATGTTCTTATGCTTGTAAAA+TGG + chr6.2:199913-199932 MS.gene053098:intron 25.0%
! ATTGGCGTCAAAAAATTAAA+CGG - chr6.2:198352-198371 None:intergenic 25.0%
! GAAATTGAAAAAAGGTTGTT+TGG + chr6.2:199274-199293 MS.gene053098:intron 25.0%
! TATATAACTTCTATAGTCTC+AGG - chr6.2:199073-199092 None:intergenic 25.0%
! TATCAAAGATCTTTACTATC+AGG - chr6.2:199210-199229 None:intergenic 25.0%
! TGAAGATGAATTGAAGAAAT+TGG + chr6.2:197919-197938 MS.gene053098:CDS 25.0%
! TTGTCCTTGAAATTGAAAAA+AGG + chr6.2:198792-198811 MS.gene053098:intron 25.0%
!! AATTTTCTCTGCTAGATTTT+TGG - chr6.2:197783-197802 None:intergenic 25.0%
!! ATATACATATCTGAGATATG+TGG + chr6.2:199746-199765 MS.gene053098:intron 25.0%
!!! ACAACCTTTTTTCAATTTCA+AGG - chr6.2:199273-199292 None:intergenic 25.0%
!!! AGTTTTGGAGATTTTGAATA+AGG + chr6.2:198210-198229 MS.gene053098:CDS 25.0%
AATTGAAGAAATTGGTGGAA+AGG + chr6.2:197927-197946 MS.gene053098:CDS 30.0%
AGATGAATTGAAGAAATTGG+TGG + chr6.2:197922-197941 MS.gene053098:CDS 30.0%
ATAAAACTTGCATAGTCTCA+GGG - chr6.2:199846-199865 None:intergenic 30.0%
ATCAATTACTGATGTTGTGA+AGG + chr6.2:199528-199547 MS.gene053098:intron 30.0%
CAAAATGTATTCTCAGTTTC+AGG - chr6.2:199881-199900 None:intergenic 30.0%
CCTGTTAAGAAGTTATCATA+AGG - chr6.2:199778-199797 None:intergenic 30.0%
CCTTATGATAACTTCTTAAC+AGG + chr6.2:199775-199794 MS.gene053098:intron 30.0%
GATGATATAGACATAAGTAG+CGG + chr6.2:198752-198771 MS.gene053098:intron 30.0%
GCTACATCAGAGATTTAAAA+TGG - chr6.2:199155-199174 None:intergenic 30.0%
TATAAAACTTGCATAGTCTC+AGG - chr6.2:199847-199866 None:intergenic 30.0%
TCATTTGCAACAAAGAAGTT+GGG - chr6.2:198959-198978 None:intergenic 30.0%
TGTAACATCCAAATCCAATA+GGG - chr6.2:198713-198732 None:intergenic 30.0%
TGTTTCTTTCTTTCAGACAT+TGG + chr6.2:200117-200136 MS.gene053098:intron 30.0%
TTGTAACATCCAAATCCAAT+AGG - chr6.2:198714-198733 None:intergenic 30.0%
! AGATCTTTGATAGTTAGTAG+CGG + chr6.2:199218-199237 MS.gene053098:intron 30.0%
! CAGCATTTTGTTCAATTTCA+TGG - chr6.2:199634-199653 None:intergenic 30.0%
! GATTATCAGAGATGCTATTT+CGG + chr6.2:198375-198394 MS.gene053098:CDS 30.0%
! TTGATTGCGAATTTTGTGAA+AGG - chr6.2:197608-197627 None:intergenic 30.0%
! TTTTGATGCAATACATCAGT+AGG - chr6.2:197722-197741 None:intergenic 30.0%
!! AGCTTAGAAAACCGTTTTTA+GGG + chr6.2:198167-198186 MS.gene053098:CDS 30.0%
!! TCAGTTTAGCCTTGTTATTA+AGG + chr6.2:199809-199828 MS.gene053098:intron 30.0%
!!! TTAATTTTTTGACGCCAATG+AGG + chr6.2:198353-198372 MS.gene053098:CDS 30.0%
ACTTCTTTGTTGCAAATGAG+TGG + chr6.2:198960-198979 MS.gene053098:intron 35.0%
AGATACACATGAGATATGTG+TGG + chr6.2:199341-199360 MS.gene053098:intron 35.0%
ATTTAGTGCTATGGAAGTTG+AGG + chr6.2:198609-198628 MS.gene053098:CDS 35.0%
CTCATTTGCAACAAAGAAGT+TGG - chr6.2:198960-198979 None:intergenic 35.0%
CTTCTTTGTTGCAAATGAGT+GGG + chr6.2:198961-198980 MS.gene053098:intron 35.0%
GCTAAATCCTTCTCTCAATT+CGG + chr6.2:197269-197288 MS.gene053098:CDS 35.0%
GTTACAATGTGTTTCTCTAG+TGG + chr6.2:198727-198746 MS.gene053098:intron 35.0%
TAAGGATGTGAAGTTTGTGT+TGG + chr6.2:198120-198139 MS.gene053098:CDS 35.0%
TCACCAACTAACCCTAAAAA+CGG - chr6.2:198181-198200 None:intergenic 35.0%
TCTTGTAACCAAAACGATGT+CGG + chr6.2:197539-197558 MS.gene053098:CDS 35.0%
TGGATATGGATTTAGTGCTA+TGG + chr6.2:198600-198619 MS.gene053098:CDS 35.0%
TTAAATCTCTGATGTAGCGA+GGG + chr6.2:199157-199176 MS.gene053098:intron 35.0%
TTCACATCCTTAGACCATTT+CGG - chr6.2:198112-198131 None:intergenic 35.0%
TTTAAATCTCTGATGTAGCG+AGG + chr6.2:199156-199175 MS.gene053098:intron 35.0%
! AAAGATGATCCGTTTTGCTT+GGG + chr6.2:198238-198257 MS.gene053098:CDS 35.0%
! AGCTATTTCGAGTAAAGTGA+AGG + chr6.2:198282-198301 MS.gene053098:CDS 35.0%
! CTAGTTTGCAACATAGAAGT+TGG - chr6.2:199697-199716 None:intergenic 35.0%
! CTCGTTCAGAAGTTTTCATA+AGG - chr6.2:199379-199398 None:intergenic 35.0%
! CTTTCTTTCAGACATTGGTT+CGG + chr6.2:200122-200141 MS.gene053098:intron 35.0%
! GTGATTGTTTTCAACAATGG+TGG + chr6.2:200163-200182 MS.gene053098:CDS 35.0%
! GTGGTGATTGTTTTCAACAA+TGG + chr6.2:200160-200179 MS.gene053098:CDS 35.0%
! TAAAGATGATCCGTTTTGCT+TGG + chr6.2:198237-198256 MS.gene053098:CDS 35.0%
! TATCCAAGATCTTTGCTATC+AGG - chr6.2:199581-199600 None:intergenic 35.0%
! TGAATTGGCTGCTTCATTTT+GGG + chr6.2:198080-198099 MS.gene053098:CDS 35.0%
! TGGTCTTGGTTATTGTATTG+CGG + chr6.2:198528-198547 MS.gene053098:CDS 35.0%
! TTCAACAATGGTGGTGTATA+TGG + chr6.2:200172-200191 MS.gene053098:CDS 35.0%
! TTGAATTGGCTGCTTCATTT+TGG + chr6.2:198079-198098 MS.gene053098:CDS 35.0%
! TTTCTGCTTAGAACTTTTGC+TGG + chr6.2:199180-199199 MS.gene053098:intron 35.0%
!! AGAGATGCTATTTCGGAATT+TGG + chr6.2:198382-198401 MS.gene053098:CDS 35.0%
!! GAGCTTAGAAAACCGTTTTT+AGG + chr6.2:198166-198185 MS.gene053098:CDS 35.0%
!! TGGTGATGCTAAAGAAGTTT+TGG + chr6.2:198195-198214 MS.gene053098:CDS 35.0%
!!! AAACCGTTTTTAGGGTTAGT+TGG + chr6.2:198175-198194 MS.gene053098:CDS 35.0%
!!! AAAGGTTTTTTGGCATGCAT+TGG + chr6.2:198909-198928 MS.gene053098:intron 35.0%
AAGAAATTGGTGGAAAGGAC+AGG + chr6.2:197932-197951 MS.gene053098:CDS 40.0%
ACATCCTTTGTTCCAAATGC+AGG + chr6.2:200253-200272 MS.gene053098:CDS 40.0%
AGAAATTGGTGGAAAGGACA+GGG + chr6.2:197933-197952 MS.gene053098:CDS 40.0%
AGATCCAAATAAACACCACC+AGG - chr6.2:197698-197717 None:intergenic 40.0%
AGGAATTTCGGAGATATGCT+TGG - chr6.2:197633-197652 None:intergenic 40.0%
ATGGTAACATTTATGACGGC+TGG - chr6.2:200379-200398 None:intergenic 40.0%
CAAAAGCTTCCATCATAGTG+TGG - chr6.2:200282-200301 None:intergenic 40.0%
CATCCTTTGTTCCAAATGCA+GGG + chr6.2:200254-200273 MS.gene053098:CDS 40.0%
CATGGCTTATTCTCTGTTTC+AGG - chr6.2:199107-199126 None:intergenic 40.0%
CCTTTCCCAAACACAATCAA+CGG - chr6.2:197881-197900 None:intergenic 40.0%
CTGAAACAGAGAATAAGCCA+TGG + chr6.2:199105-199124 MS.gene053098:intron 40.0%
CTTCTATAGTCTCAGGGAAA+AGG - chr6.2:199066-199085 None:intergenic 40.0%
GCATCTCTGATAATCCTCAT+TGG - chr6.2:198370-198389 None:intergenic 40.0%
GGTTAAAAGCGATTCAGCTT+CGG - chr6.2:197756-197775 None:intergenic 40.0%
GTTCCTGATAGCAAAGATCT+TGG + chr6.2:199575-199594 MS.gene053098:intron 40.0%
GTTGTGATCCCTATTGGATT+TGG + chr6.2:198702-198721 MS.gene053098:intron 40.0%
TCGAGTAAAGTGAAGGACAA+TGG + chr6.2:198289-198308 MS.gene053098:CDS 40.0%
TCTCAGAATCTTTCTCTGCT+AGG + chr6.2:200350-200369 MS.gene053098:CDS 40.0%
TGAGCAGTGATGAATCTTAG+TGG + chr6.2:198847-198866 MS.gene053098:intron 40.0%
TGCGACGCAATTAGGAATTT+CGG - chr6.2:197645-197664 None:intergenic 40.0%
TGCTATTGGAAAATGTGACG+TGG + chr6.2:198036-198055 MS.gene053098:CDS 40.0%
TTGAAAACAATCACCACCAC+AGG - chr6.2:200157-200176 None:intergenic 40.0%
! AACAATGGTGGTGTATATGG+TGG + chr6.2:200175-200194 MS.gene053098:CDS 40.0%
! AAGATGATCCGTTTTGCTTG+GGG + chr6.2:198239-198258 MS.gene053098:CDS 40.0%
! AGAGCTGACTTTAGTTCATC+AGG - chr6.2:200331-200350 None:intergenic 40.0%
! GAATTGGCTGCTTCATTTTG+GGG + chr6.2:198081-198100 MS.gene053098:CDS 40.0%
! GCATTTGGAACAAAGGATGT+CGG - chr6.2:200253-200272 None:intergenic 40.0%
!! AAAGGGTATTTGGCATGCAT+TGG + chr6.2:198822-198841 MS.gene053098:intron 40.0%
!! ACTATGATGGAAGCTTTTGG+TGG + chr6.2:200283-200302 MS.gene053098:CDS 40.0%
!! CACACTATGATGGAAGCTTT+TGG + chr6.2:200280-200299 MS.gene053098:CDS 40.0%
!! CTATGATGGAAGCTTTTGGT+GGG + chr6.2:200284-200303 MS.gene053098:CDS 40.0%
!! GATGCTATTTCGGAATTTGG+AGG + chr6.2:198385-198404 MS.gene053098:CDS 40.0%
!! TTCTGAAGGTGCTAATACCA+TGG + chr6.2:198429-198448 MS.gene053098:CDS 40.0%
!!! CTCTGCTAGATTTTTGGCTT+CGG - chr6.2:197777-197796 None:intergenic 40.0%
!!! TTTTTTGCAGCAGCATACCA+TGG - chr6.2:199125-199144 None:intergenic 40.0%
AATTCCATTGCGAATCGACC+TGG + chr6.2:197677-197696 MS.gene053098:CDS 45.0%
AATTCCTAATTGCGTCGCAC+AGG + chr6.2:197646-197665 MS.gene053098:CDS 45.0%
AGAGAAACATGGACCTCACA+AGG + chr6.2:200216-200235 MS.gene053098:CDS 45.0%
ATAGTGTGGTACCCTGCATT+TGG - chr6.2:200268-200287 None:intergenic 45.0%
CGTTGTGGAAAGCGATGAAA+CGG - chr6.2:197367-197386 None:intergenic 45.0%
GAACCTGAGATCATGACAGT+AGG - chr6.2:197521-197540 None:intergenic 45.0%
GAAGGACAATGGTGTGAAGA+TGG + chr6.2:198300-198319 MS.gene053098:CDS 45.0%
GATTCGCAATGGAATTAGCG+AGG - chr6.2:197673-197692 None:intergenic 45.0%
GGATGTGAAGTTTGTGTTGG+TGG + chr6.2:198123-198142 MS.gene053098:CDS 45.0%
GGTGCTAATACCATGGATGT+TGG + chr6.2:198436-198455 MS.gene053098:CDS 45.0%
GTGGGAAGGGTTATCTTGTT+GGG + chr6.2:200302-200321 MS.gene053098:CDS 45.0%
GTTACCATTGATCCCTATGC+CGG + chr6.2:200391-200410 MS.gene053098:CDS 45.0%
GTTGAAGGGGATTCTGGATA+TGG + chr6.2:198586-198605 MS.gene053098:CDS 45.0%
TGATTGGTGCGAGGTTGAAT+TGG + chr6.2:198065-198084 MS.gene053098:CDS 45.0%
TGTGAAGATGGAGGCTCAAT+TGG + chr6.2:198312-198331 MS.gene053098:CDS 45.0%
TTGTGCGTTGTGATCCCTAT+TGG + chr6.2:198696-198715 MS.gene053098:intron 45.0%
! AGAGGCCGTTGATTGTGTTT+GGG + chr6.2:197873-197892 MS.gene053098:CDS 45.0%
! AGCTGTTTCGCTTCTGAGAA+AGG + chr6.2:197847-197866 MS.gene053098:CDS 45.0%
! ATGGAAGCTTTTGGTGGGAA+GGG + chr6.2:200289-200308 MS.gene053098:CDS 45.0%
! CCGTTGATTGTGTTTGGGAA+AGG + chr6.2:197878-197897 MS.gene053098:CDS 45.0%
! GTACCCTGCATTTGGAACAA+AGG - chr6.2:200260-200279 None:intergenic 45.0%
! TAGGTTGGATGCTGGTACTT+GGG + chr6.2:198492-198511 MS.gene053098:CDS 45.0%
! TCGACCTGGTGGTGTTTATT+TGG + chr6.2:197691-197710 MS.gene053098:CDS 45.0%
! TGTTTCGCTTCTGAGAAAGG+CGG + chr6.2:197850-197869 MS.gene053098:CDS 45.0%
!! ATTTTGGGGAAGAGCCGAAA+TGG + chr6.2:198095-198114 MS.gene053098:CDS 45.0%
!! TCGATCTGTGTTGGTTCAGA+AGG + chr6.2:198459-198478 MS.gene053098:CDS 45.0%
AACCAAAACGATGTCGGTCG+CGG + chr6.2:197545-197564 MS.gene053098:CDS 50.0%
AATCCCTTCCCCATTGGAGT+CGG - chr6.2:197971-197990 None:intergenic 50.0%
AATGGGGAAGGGATTGTTGC+CGG + chr6.2:197976-197995 MS.gene053098:CDS 50.0%
AGAACCGGCATAGGGATCAA+TGG - chr6.2:200398-200417 None:intergenic 50.0%
AGGTTGGATGCTGGTACTTG+GGG + chr6.2:198493-198512 MS.gene053098:CDS 50.0%
CACAGATCGACCAACATCCA+TGG - chr6.2:198449-198468 None:intergenic 50.0%
CCCATTGGAGTCGGAAGAAA+GGG - chr6.2:197962-197981 None:intergenic 50.0%
CCCTTTCTTCCGACTCCAAT+GGG + chr6.2:197959-197978 MS.gene053098:CDS 50.0%
CCTTTCTTCCGACTCCAATG+GGG + chr6.2:197960-197979 MS.gene053098:CDS 50.0%
CTCGAAATAGCTTCCACCCA+TGG - chr6.2:198274-198293 None:intergenic 50.0%
GAAACATGGACCTCACAAGG+AGG + chr6.2:200219-200238 MS.gene053098:CDS 50.0%
GACAGTAGGCCATGTGTTAG+TGG - chr6.2:197507-197526 None:intergenic 50.0%
GAGAGAAGGATTTAGCAGCG+AGG - chr6.2:197265-197284 None:intergenic 50.0%
GATGGAGGCTCAATTGGCAA+AGG + chr6.2:198318-198337 MS.gene053098:CDS 50.0%
GGAAGAGCCGAAATGGTCTA+AGG + chr6.2:198102-198121 MS.gene053098:CDS 50.0%
GGACAATGGTGTGAAGATGG+AGG + chr6.2:198303-198322 MS.gene053098:CDS 50.0%
GGATGTTGGTCGATCTGTGT+TGG + chr6.2:198450-198469 MS.gene053098:CDS 50.0%
GGTGGGAAGGGTTATCTTGT+TGG + chr6.2:200301-200320 MS.gene053098:CDS 50.0%
GTTTCTCTTCCGCGCTTCTA+CGG - chr6.2:200204-200223 None:intergenic 50.0%
TCCCTTTCTTCCGACTCCAA+TGG + chr6.2:197958-197977 MS.gene053098:CDS 50.0%
TGAGTGCTCCCCAAGCAAAA+CGG - chr6.2:198250-198269 None:intergenic 50.0%
TGCATTGGACTGAGCAGTGA+TGG + chr6.2:198837-198856 MS.gene053098:intron 50.0%
TGGAACAAAGGATGTCGGAG+CGG - chr6.2:200248-200267 None:intergenic 50.0%
TGGCCTACTGTCATGATCTC+AGG + chr6.2:197515-197534 MS.gene053098:CDS 50.0%
TGTGACGTGGCGATTGTGAT+TGG + chr6.2:198049-198068 MS.gene053098:CDS 50.0%
TTCAGAAGGAGCCAAGGACT+AGG + chr6.2:198473-198492 MS.gene053098:CDS 50.0%
TTCCACAACGAACAATCCGC+CGG + chr6.2:197377-197396 MS.gene053098:CDS 50.0%
TTCGGCGTCCAACACATGTT+CGG + chr6.2:197287-197306 MS.gene053098:CDS 50.0%
TTGGACGCCGAATTGAGAGA+AGG - chr6.2:197279-197298 None:intergenic 50.0%
! AGAAGCGCGGAAGAGAAACA+TGG + chr6.2:200205-200224 MS.gene053098:CDS 50.0%
! CCTTGTCGTTGCTGTTGAAG+GGG + chr6.2:198573-198592 MS.gene053098:CDS 50.0%
! CTAGGTTGGATGCTGGTACT+TGG + chr6.2:198491-198510 MS.gene053098:CDS 50.0%
! GAGAGGCCGTTGATTGTGTT+TGG + chr6.2:197872-197891 MS.gene053098:CDS 50.0%
! GATGGAAGCTTTTGGTGGGA+AGG + chr6.2:200288-200307 MS.gene053098:CDS 50.0%
! GCCTTGTCGTTGCTGTTGAA+GGG + chr6.2:198572-198591 MS.gene053098:CDS 50.0%
! GTTGCTGTTGAAGGGGATTC+TGG + chr6.2:198580-198599 MS.gene053098:CDS 50.0%
! TGCAGGGTACCACACTATGA+TGG + chr6.2:200270-200289 MS.gene053098:CDS 50.0%
! TGTGTTGGTGGATGTCAGCA+AGG + chr6.2:198135-198154 MS.gene053098:CDS 50.0%
!! TGTTGGTTCAGAAGGAGCCA+AGG + chr6.2:198467-198486 MS.gene053098:CDS 50.0%
ACAGCAACGACAAGGCGATC+AGG - chr6.2:198568-198587 None:intergenic 55.0%
AGGACCTGTGCGACGCAATT+AGG - chr6.2:197653-197672 None:intergenic 55.0%
CAACACATGTTCGGCGTCGT+CGG + chr6.2:197296-197315 MS.gene053098:CDS 55.0%
CAATCACCACCACAGGCAGT+TGG - chr6.2:200150-200169 None:intergenic 55.0%
CATCCTCCCACTCTCAGAAC+CGG - chr6.2:200413-200432 None:intergenic 55.0%
CCAACGGCACCACTAACACA+TGG + chr6.2:197495-197514 MS.gene053098:CDS 55.0%
CCACTCTCAGAACCGGCATA+GGG - chr6.2:200406-200425 None:intergenic 55.0%
CCAGCATCCAACCTAGTCCT+TGG - chr6.2:198487-198506 None:intergenic 55.0%
CCCCATTGGAGTCGGAAGAA+AGG - chr6.2:197963-197982 None:intergenic 55.0%
CCCCTTCAACAGCAACGACA+AGG - chr6.2:198576-198595 None:intergenic 55.0%
CGTGTGGCGAGTGAAGTTAC+GGG - chr6.2:197326-197345 None:intergenic 55.0%
CTGGTACTTGGGGGACTATG+GGG + chr6.2:198503-198522 MS.gene053098:CDS 55.0%
CTTCCGACTCCAATGGGGAA+GGG + chr6.2:197965-197984 MS.gene053098:CDS 55.0%
GAAACGGATGCCGAGAGAGA+CGG - chr6.2:197351-197370 None:intergenic 55.0%
GAACAAAGGATGTCGGAGCG+GGG - chr6.2:200246-200265 None:intergenic 55.0%
GAAGGAGCCAAGGACTAGGT+TGG + chr6.2:198477-198496 MS.gene053098:CDS 55.0%
GCACCTTCAGAAACCACCAC+AGG - chr6.2:198421-198440 None:intergenic 55.0%
GCAGCCAACGGATGATCATC+CGG - chr6.2:197998-198017 None:intergenic 55.0%
GCGATCAGGATAAGCGACAG+TGG - chr6.2:198554-198573 None:intergenic 55.0%
GCGTGTGGCGAGTGAAGTTA+CGG - chr6.2:197327-197346 None:intergenic 55.0%
GCTCCTGTGGTGGTTTCTGA+AGG + chr6.2:198415-198434 MS.gene053098:CDS 55.0%
GCTGGTACTTGGGGGACTAT+GGG + chr6.2:198502-198521 MS.gene053098:CDS 55.0%
GGAACAAAGGATGTCGGAGC+GGG - chr6.2:200247-200266 None:intergenic 55.0%
GGCAACAATCCCTTCCCCAT+TGG - chr6.2:197977-197996 None:intergenic 55.0%
GGTTGGATGCTGGTACTTGG+GGG + chr6.2:198494-198513 MS.gene053098:CDS 55.0%
GTGTGGCGAGTGAAGTTACG+GGG - chr6.2:197325-197344 None:intergenic 55.0%
GTTGCCGGATGATCATCCGT+TGG + chr6.2:197991-198010 MS.gene053098:CDS 55.0%
TCAGAAACCACCACAGGAGC+TGG - chr6.2:198415-198434 None:intergenic 55.0%
TCCATTGCGAATCGACCTGG+TGG + chr6.2:197680-197699 MS.gene053098:CDS 55.0%
TCTTCCGACTCCAATGGGGA+AGG + chr6.2:197964-197983 MS.gene053098:CDS 55.0%
TGCTGGTACTTGGGGGACTA+TGG + chr6.2:198501-198520 MS.gene053098:CDS 55.0%
TGGCGATTGTGATTGGTGCG+AGG + chr6.2:198056-198075 MS.gene053098:CDS 55.0%
TGGTACTTGGGGGACTATGG+GGG + chr6.2:198504-198523 MS.gene053098:CDS 55.0%
! CCAAGGACTAGGTTGGATGC+TGG + chr6.2:198484-198503 MS.gene053098:CDS 55.0%
! CGCCTTGTCGTTGCTGTTGA+AGG + chr6.2:198571-198590 MS.gene053098:CDS 55.0%
!! AACCGGCGGATTGTTCGTTG+TGG - chr6.2:197382-197401 None:intergenic 55.0%
!! ACCACCAGGTCGATTCGCAA+TGG - chr6.2:197684-197703 None:intergenic 55.0%
!! CCATGTGTTAGTGGTGCCGT+TGG - chr6.2:197498-197517 None:intergenic 55.0%
!! CCTATGCCGGTTCTGAGAGT+GGG + chr6.2:200404-200423 MS.gene053098:CDS 55.0%
!! CTTGGGGAGCACTCATCCAT+GGG + chr6.2:198255-198274 MS.gene053098:CDS 55.0%
!! GCGGCTAGGTCACTTGCTAT+TGG + chr6.2:198022-198041 MS.gene053098:CDS 55.0%
ACTTGGGGGACTATGGGGGT+TGG + chr6.2:198508-198527 MS.gene053098:CDS 60.0%
AGCAAGTGACCTAGCCGCAG+AGG - chr6.2:198020-198039 None:intergenic 60.0%
AGGAAGTCCAGCTCCTGTGG+TGG + chr6.2:198405-198424 MS.gene053098:CDS 60.0%
CCCACTCTCAGAACCGGCAT+AGG - chr6.2:200407-200426 None:intergenic 60.0%
CGACGACGCCGAACATGTGT+TGG - chr6.2:197298-197317 None:intergenic 60.0%
GAGACGGTGAGGAAGATGCC+GGG - chr6.2:197440-197459 None:intergenic 60.0%
GGAGACGGTGAGGAAGATGC+CGG - chr6.2:197441-197460 None:intergenic 60.0%
GGAGGTGAGGTAGCCGTAAG+CGG - chr6.2:197414-197433 None:intergenic 60.0%
GGCATCTTCCTCACCGTCTC+CGG + chr6.2:197440-197459 MS.gene053098:CDS 60.0%
TCGGTACCAACTGCCTGTGG+TGG + chr6.2:200141-200160 MS.gene053098:CDS 60.0%
TGGAGGAAGTCCAGCTCCTG+TGG + chr6.2:198402-198421 MS.gene053098:CDS 60.0%
! CACCGCGACCGACATCGTTT+TGG - chr6.2:197550-197569 None:intergenic 60.0%
! CGCTTCTGAGAAAGGCGGAG+AGG + chr6.2:197855-197874 MS.gene053098:CDS 60.0%
! GGTTCGGTACCAACTGCCTG+TGG + chr6.2:200138-200157 MS.gene053098:CDS 60.0%
! TCATCCGTTGGCTGCCTCTG+CGG + chr6.2:198003-198022 MS.gene053098:CDS 60.0%
! TGGTGGTGACCGTAGAAGCG+CGG + chr6.2:200192-200211 MS.gene053098:CDS 60.0%
!! AGTGGTGCCGTTGGAGAGAC+CGG - chr6.2:197489-197508 None:intergenic 60.0%
!! ATGCCGGTTCTGAGAGTGGG+AGG + chr6.2:200407-200426 MS.gene053098:CDS 60.0%
!! CCCTATGCCGGTTCTGAGAG+TGG + chr6.2:200403-200422 MS.gene053098:CDS 60.0%
!! GCTTGGGGAGCACTCATCCA+TGG + chr6.2:198254-198273 MS.gene053098:CDS 60.0%
!! GGGACTATGGGGGTTGGTCT+TGG + chr6.2:198514-198533 MS.gene053098:CDS 60.0%
AACGCAACCGGGACCGGAGA+CGG - chr6.2:197456-197475 None:intergenic 65.0%
ACCGTGAACGCAACCGGGAC+CGG - chr6.2:197462-197481 None:intergenic 65.0%
CGGTGAGGAAGATGCCGGGA+CGG - chr6.2:197436-197455 None:intergenic 65.0%
CTAGCCGCAGAGGCAGCCAA+CGG - chr6.2:198010-198029 None:intergenic 65.0%
GAGGTAGCCGTAAGCGGAGG+CGG - chr6.2:197408-197427 None:intergenic 65.0%
GCGAGACCGTGAACGCAACC+GGG - chr6.2:197467-197486 None:intergenic 65.0%
GGCGAGACCGTGAACGCAAC+CGG - chr6.2:197468-197487 None:intergenic 65.0%
GGTCTCGCCGGTCTCTCCAA+CGG + chr6.2:197479-197498 MS.gene053098:CDS 65.0%
GGTGAGGAAGATGCCGGGAC+GGG - chr6.2:197435-197454 None:intergenic 65.0%
GGTGAGGTAGCCGTAAGCGG+AGG - chr6.2:197411-197430 None:intergenic 65.0%
GGTTACGCCGCCTCCGCTTA+CGG + chr6.2:197398-197417 MS.gene053098:CDS 65.0%
GGTTGCGTTCACGGTCTCGC+CGG + chr6.2:197467-197486 MS.gene053098:CDS 65.0%
GTAAGCGGAGGCGGCGTAAC+CGG - chr6.2:197399-197418 None:intergenic 65.0%
TCCGGTCCCGGTTGCGTTCA+CGG + chr6.2:197458-197477 MS.gene053098:CDS 65.0%
TTCCTCACCGTCTCCGGTCC+CGG + chr6.2:197446-197465 MS.gene053098:CDS 65.0%
!! GGGGAGCACTCATCCATGGG+TGG + chr6.2:198258-198277 MS.gene053098:CDS 65.0%
AACCGGGACCGGAGACGGTG+AGG - chr6.2:197451-197470 None:intergenic 70.0%
AGATGCCGGGACGGGAGGTG+AGG - chr6.2:197427-197446 None:intergenic 70.0%
GAGGAAGATGCCGGGACGGG+AGG - chr6.2:197432-197451 None:intergenic 70.0%
GCCACACGCGCCGTCTCTCT+CGG + chr6.2:197338-197357 MS.gene053098:CDS 70.0%
GGAGCGGGGTCCTCCTTGTG+AGG - chr6.2:200232-200251 None:intergenic 70.0%
GGCTACCTCACCTCCCGTCC+CGG + chr6.2:197419-197438 MS.gene053098:CDS 70.0%
! CGTTGGCTGCCTCTGCGGCT+AGG + chr6.2:198008-198027 MS.gene053098:CDS 70.0%
AGCGGAGGCGGCGTAACCGG+CGG - chr6.2:197396-197415 None:intergenic 75.0%
GCCGAGAGAGACGGCGCGTG+TGG - chr6.2:197342-197361 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 197239 200447 197239 ID=MS.gene053098
chr6.2 mRNA 197239 200447 197239 ID=MS.gene053098.t1;Parent=MS.gene053098
chr6.2 exon 197239 198630 197239 ID=MS.gene053098.t1.exon1;Parent=MS.gene053098.t1
chr6.2 CDS 197239 198630 197239 ID=cds.MS.gene053098.t1;Parent=MS.gene053098.t1
chr6.2 exon 200133 200447 200133 ID=MS.gene053098.t1.exon2;Parent=MS.gene053098.t1
chr6.2 CDS 200133 200447 200133 ID=cds.MS.gene053098.t1;Parent=MS.gene053098.t1
Gene Sequence

>MS.gene053098

ATGGGAGAAATTGACGGTAATGTCCTCGCTGCTAAATCCTTCTCTCAATTCGGCGTCCAACACATGTTCGGCGTCGTCGGTATCCCCGTAACTTCACTCGCCACACGCGCCGTCTCTCTCGGCATCCGTTTCATCGCTTTCCACAACGAACAATCCGCCGGTTACGCCGCCTCCGCTTACGGCTACCTCACCTCCCGTCCCGGCATCTTCCTCACCGTCTCCGGTCCCGGTTGCGTTCACGGTCTCGCCGGTCTCTCCAACGGCACCACTAACACATGGCCTACTGTCATGATCTCAGGTTCTTGTAACCAAAACGATGTCGGTCGCGGTGATTTTCAAGAACTCGATCAGATCGAAGCTGTTAAGCCTTTCACAAAATTCGCAATCAAAGCCAAGCATATCTCCGAAATTCCTAATTGCGTCGCACAGGTCCTCGCTAATTCCATTGCGAATCGACCTGGTGGTGTTTATTTGGATCTTCCTACTGATGTATTGCATCAAAAAGTTTCAGAATCCGAAGCTGAATCGCTTTTAACCGAAGCCAAAAATCTAGCAGAGAAAATTAAGAAAAGTCACGTTATAAGTATTGAATCTTCGAAGATTCAAGAAGCTGTTTCGCTTCTGAGAAAGGCGGAGAGGCCGTTGATTGTGTTTGGGAAAGGAGCAGCTTATGCTAAAGCTGAAGATGAATTGAAGAAATTGGTGGAAAGGACAGGGATTCCCTTTCTTCCGACTCCAATGGGGAAGGGATTGTTGCCGGATGATCATCCGTTGGCTGCCTCTGCGGCTAGGTCACTTGCTATTGGAAAATGTGACGTGGCGATTGTGATTGGTGCGAGGTTGAATTGGCTGCTTCATTTTGGGGAAGAGCCGAAATGGTCTAAGGATGTGAAGTTTGTGTTGGTGGATGTCAGCAAGGAAGAAATTGAGCTTAGAAAACCGTTTTTAGGGTTAGTTGGTGATGCTAAAGAAGTTTTGGAGATTTTGAATAAGGAGATTAAAGATGATCCGTTTTGCTTGGGGAGCACTCATCCATGGGTGGAAGCTATTTCGAGTAAAGTGAAGGACAATGGTGTGAAGATGGAGGCTCAATTGGCAAAGGACGTTGTGCCGTTTAATTTTTTGACGCCAATGAGGATTATCAGAGATGCTATTTCGGAATTTGGAGGAAGTCCAGCTCCTGTGGTGGTTTCTGAAGGTGCTAATACCATGGATGTTGGTCGATCTGTGTTGGTTCAGAAGGAGCCAAGGACTAGGTTGGATGCTGGTACTTGGGGGACTATGGGGGTTGGTCTTGGTTATTGTATTGCGGCCACTGTCGCTTATCCTGATCGCCTTGTCGTTGCTGTTGAAGGGGATTCTGGATATGGATTTAGTGCTATGGAAGTTGAGGTATATATTTTGTCATCTAAAATATCATGCAAATTTACATCATTACTATTGTTTTCGAATTGTGTTTGTGCGTTGTGATCCCTATTGGATTTGGATGTTACAATGTGTTTCTCTAGTGGTAGATGATATAGACATAAGTAGCGGCGAATATAAATGCTTTATTGTCCTTGAAATTGAAAAAAAAAAAGAAAAAAGGGTATTTGGCATGCATTGGACTGAGCAGTGATGAATCTTAGTGGCGAATGTAAATGTTTTCTTGTCCTTGAAATTGAAAAAAAAAAGGTTTTTTGGCATGCATTGGACTGAGCAGTGATGGATATTAGTGCCCAACTTCTTTGTTGCAAATGAGTGGGCAACATAACATACACATATTAGATTTGTGGATTTTACCTTATAAAAATTTCTTAACAAGTTTGTTATTTTGGGTCTTTACCTTTTCCCTGAGACTATAGAAGTTATATATCTTGTTCTAGCCTGAAACAGAGAATAAGCCATGGTATGCTGCTGCAAAAAATCAAGTTCCATTTTAAATCTCTGATGTAGCGAGGGTTTCTGCTTAGAACTTTTGCTGGTGTTCCTGATAGTAAAGATCTTTGATAGTTAGTAGCGGTGTTTATGAAATGTTTAATGCTTTCTTGTCCTTGAAATTGAAAAAAGGTTGTTTGGCATGCATTGCACTTAATAGTGATGACTGATGAGTGAGCAACATAAGATACACATGAGATATGTGTGGAATATTTTTTTACCTTATGAAAACTTCTGAACGAGTTATTTACTCTGAAGCCTTGTTATTTTTCAAATTTTATATCTCTAGTCGTACATGATAGACATTTATATCTCTAGTCGTACATGATAGACAAATGTAGTATGCTGCTGCAAAAACGAAGTTCCATTTAAATCAATTACTGATGTTGTGAAGGTTTCTGCTTAGATTTTTAACTAGTGTTCCTGATAGCAAAGATCTTGGATAGTTAGTACATAATCATAAATGTTTTCTCGTCCATGAAATTGAACAAAATGCTGTTTGGCATGCATTAGAGTTAAAAACGATGAATCTTAGCTTCCAACTTCTATGTTGCAAACTAGTAAGCAACATAATAAGATACATATCTGAGATATACATATCTGAGATATGTGGATTTTACCTTATGATAACTTCTTAACAGGTTTGTTTTTCTTCAGTTTAGCCTTGTTATTAAGGTCTTTACTTTTCCCTGAGACTATGCAAGTTTTATATGTTGTTCTAGCCTGAAACTGAGAATACATTTTGCTTCAAACAAAAATGTTCTTATGCTTGTAAAATGGATTTGTTTGTTTATATAGCTTTGTGAATTTTAACTTTTTAAAAACCATTCATTCATATTAGTTTATAAATTTTTGGTTTCTTAATATATGTAATGCGATCTTATTCATATATGGCTGCATATGCTTTACTCTTGCACCTCATTTTATGAATACAAGAATGTAATTTGATGCTCTATATTTTTGTTTCTTTCTTTCAGACATTGGTTCGGTACCAACTGCCTGTGGTGGTGATTGTTTTCAACAATGGTGGTGTATATGGTGGTGACCGTAGAAGCGCGGAAGAGAAACATGGACCTCACAAGGAGGACCCCGCTCCGACATCCTTTGTTCCAAATGCAGGGTACCACACTATGATGGAAGCTTTTGGTGGGAAGGGTTATCTTGTTGGGACACCTGATGAACTAAAGTCAGCTCTCTCAGAATCTTTCTCTGCTAGGAAACCAGCCGTCATAAATGTTACCATTGATCCCTATGCCGGTTCTGAGAGTGGGAGGATGCAACACAAGAATTGA
Protein sequence

>MS.gene053098.t1

MGEIDGNVLAAKSFSQFGVQHMFGVVGIPVTSLATRAVSLGIRFIAFHNEQSAGYAASAYGYLTSRPGIFLTVSGPGCVHGLAGLSNGTTNTWPTVMISGSCNQNDVGRGDFQELDQIEAVKPFTKFAIKAKHISEIPNCVAQVLANSIANRPGGVYLDLPTDVLHQKVSESEAESLLTEAKNLAEKIKKSHVISIESSKIQEAVSLLRKAERPLIVFGKGAAYAKAEDELKKLVERTGIPFLPTPMGKGLLPDDHPLAASAARSLAIGKCDVAIVIGARLNWLLHFGEEPKWSKDVKFVLVDVSKEEIELRKPFLGLVGDAKEVLEILNKEIKDDPFCLGSTHPWVEAISSKVKDNGVKMEAQLAKDVVPFNFLTPMRIIRDAISEFGGSPAPVVVSEGANTMDVGRSVLVQKEPRTRLDAGTWGTMGVGLGYCIAATVAYPDRLVVAVEGDSGYGFSAMEVETLVRYQLPVVVIVFNNGGVYGGDRRSAEEKHGPHKEDPAPTSFVPNAGYHTMMEAFGGKGYLVGTPDELKSALSESFSARKPAVINVTIDPYAGSESGRMQHKN