AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene072956


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072956.t1 MTR_3g107970 95.426 481 19 1 1 481 1 478 0.0 947
MS.gene072956.t1 MTR_1g011470 58.099 463 138 7 17 477 14 422 0.0 518
MS.gene072956.t1 MTR_2g102520 48.354 486 218 13 11 477 8 479 1.01e-130 387
MS.gene072956.t1 MTR_2g102550 44.000 475 202 7 3 469 2 420 9.68e-124 368
MS.gene072956.t1 MTR_3g088415 54.643 280 125 2 201 478 225 504 1.08e-103 319
MS.gene072956.t1 MTR_3g088405 53.704 270 123 1 200 467 227 496 3.71e-103 318
MS.gene072956.t1 MTR_1g018680 51.095 274 132 1 205 476 80 353 3.15e-91 282
MS.gene072956.t1 MTR_3g088415 58.986 217 89 0 200 416 224 440 2.11e-90 283
MS.gene072956.t1 MTR_3g102530 48.029 279 143 1 196 472 64 342 9.03e-86 268
MS.gene072956.t1 MTR_3g102510 46.212 264 142 0 209 472 67 330 8.32e-81 254
MS.gene072956.t1 MTR_3g102520 46.324 272 144 1 203 472 78 349 2.80e-79 251
MS.gene072956.t1 MTR_3g102560 50.787 254 118 2 221 472 69 317 1.10e-73 235
MS.gene072956.t1 MTR_3g102540 50.781 256 116 5 220 472 13 261 2.74e-72 230
MS.gene072956.t1 MTR_3g088415 62.805 164 61 0 200 363 224 387 2.44e-71 232
MS.gene072956.t1 MTR_5g023790 40.959 271 152 4 201 470 156 419 1.54e-57 196
MS.gene072956.t1 MTR_5g088980 40.590 271 152 6 202 470 150 413 2.58e-57 196
MS.gene072956.t1 MTR_5g023790 43.966 232 122 4 201 431 156 380 4.14e-55 189
MS.gene072956.t1 MTR_8g074000 39.608 255 147 3 216 470 176 423 6.32e-55 190
MS.gene072956.t1 MTR_7g089080 40.511 274 154 7 201 470 183 451 2.44e-54 197
MS.gene072956.t1 MTR_5g023790 44.643 168 91 2 201 367 156 322 1.56e-39 146
MS.gene072956.t1 MTR_3g060770 30.556 252 160 7 185 431 2 243 1.56e-25 106
MS.gene072956.t1 MTR_3g061680 30.638 235 149 6 202 431 8 233 8.05e-25 104
MS.gene072956.t1 MTR_3g060410 34.375 192 117 5 245 431 131 318 1.00e-24 105
MS.gene072956.t1 MTR_3g060400 31.250 224 140 6 213 431 25 239 1.27e-24 103
MS.gene072956.t1 MTR_3g460990 31.250 224 140 6 213 431 25 239 1.27e-24 103
MS.gene072956.t1 MTR_3g060820 30.204 245 151 7 192 431 4 233 7.76e-24 101
MS.gene072956.t1 MTR_1g032850 35.359 181 103 5 234 411 362 531 1.43e-18 89.0
MS.gene072956.t1 MTR_5g044040 40.260 77 46 0 271 347 7 83 8.53e-17 77.0
MS.gene072956.t1 MTR_5g011900 29.730 148 101 2 242 388 95 240 3.02e-15 75.9
MS.gene072956.t1 MTR_3g100710 28.571 182 117 4 228 400 74 251 2.83e-14 74.7
MS.gene072956.t1 MTR_6g045270 27.972 286 171 13 208 481 38 300 2.53e-13 71.2
MS.gene072956.t1 MTR_4g080990 26.816 179 124 4 228 400 69 246 1.92e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene072956.t1 AT5G25380 51.363 477 169 10 10 477 19 441 6.39e-147 427
MS.gene072956.t1 AT5G11300 51.489 470 166 10 13 477 22 434 6.70e-147 427
MS.gene072956.t1 AT5G25380 50.420 476 169 8 10 477 19 435 1.79e-145 424
MS.gene072956.t1 AT5G25380 50.420 476 169 8 10 477 19 435 1.79e-145 424
MS.gene072956.t1 AT5G25380 50.327 459 162 7 10 461 19 418 6.31e-141 411
MS.gene072956.t1 AT1G80370 47.072 444 195 6 31 469 42 450 6.78e-129 382
MS.gene072956.t1 AT1G15570 48.463 423 187 7 62 477 52 450 4.51e-126 374
MS.gene072956.t1 AT5G11300 49.392 411 147 9 13 419 22 375 8.64e-119 355
MS.gene072956.t1 AT1G44110 55.147 272 122 0 196 467 174 445 5.09e-110 334
MS.gene072956.t1 AT5G43080 52.399 271 129 0 202 472 73 343 6.86e-100 304
MS.gene072956.t1 AT5G43080 52.768 271 123 1 202 472 73 338 5.72e-99 301
MS.gene072956.t1 AT1G47210 49.324 296 146 2 179 472 67 360 3.32e-98 300
MS.gene072956.t1 AT1G77390 52.500 280 131 2 200 477 162 441 1.18e-96 299
MS.gene072956.t1 AT1G47220 52.416 269 126 1 202 468 42 310 1.45e-92 284
MS.gene072956.t1 AT1G47230 48.905 274 138 1 201 472 80 353 1.51e-90 280
MS.gene072956.t1 AT1G47230 48.727 275 138 2 201 472 80 354 1.06e-88 276
MS.gene072956.t1 AT5G06150 40.278 288 161 6 193 479 158 435 6.52e-59 201
MS.gene072956.t1 AT1G20610 39.114 271 157 4 201 470 161 424 1.24e-55 191
MS.gene072956.t1 AT1G76310 40.146 274 155 5 199 470 159 425 3.63e-55 190
MS.gene072956.t1 AT3G11520 40.959 271 151 5 201 470 143 405 1.73e-53 185
MS.gene072956.t1 AT1G76310 43.404 235 124 5 199 431 159 386 2.46e-52 182
MS.gene072956.t1 AT3G11520 44.351 239 124 5 201 438 143 373 2.69e-52 181
MS.gene072956.t1 AT2G26760 40.769 260 143 7 201 457 114 365 4.02e-52 181
MS.gene072956.t1 AT1G16330 39.216 255 148 3 216 470 395 642 1.04e-49 180
MS.gene072956.t1 AT1G76310 36.424 302 155 6 199 470 159 453 2.59e-49 175
MS.gene072956.t1 AT4G37490 37.050 278 160 8 200 470 148 417 5.99e-49 174
MS.gene072956.t1 AT2G17620 40.672 268 151 4 201 467 155 415 3.36e-48 172
MS.gene072956.t1 AT4G35620 39.700 267 153 4 201 466 156 415 1.63e-47 170
MS.gene072956.t1 AT4G35620 42.672 232 125 4 201 431 156 380 6.28e-46 164
MS.gene072956.t1 AT5G06150 42.045 176 99 3 193 367 158 331 4.67e-39 145
MS.gene072956.t1 AT1G76310 45.029 171 91 3 199 367 159 328 9.31e-39 144
MS.gene072956.t1 AT1G20590 43.312 157 83 2 275 431 63 213 3.91e-34 129
MS.gene072956.t1 AT1G47210 49.219 128 61 2 179 304 67 192 3.57e-32 122
MS.gene072956.t1 AT1G34460 34.091 176 93 4 193 367 234 387 5.45e-22 99.0
MS.gene072956.t1 AT1G34460 34.091 176 93 4 193 367 248 401 6.08e-22 99.0
MS.gene072956.t1 AT1G34460 34.091 176 93 4 193 367 248 401 6.08e-22 99.0
MS.gene072956.t1 AT1G34460 34.091 176 93 4 193 367 248 401 6.08e-22 99.0
MS.gene072956.t1 AT1G34460 34.091 176 93 4 193 367 248 401 6.08e-22 99.0
MS.gene072956.t1 AT1G34460 34.091 176 93 4 193 367 248 401 6.36e-22 99.0
MS.gene072956.t1 AT1G34460 34.091 176 93 4 193 367 245 398 6.55e-22 99.0
MS.gene072956.t1 AT1G34460 34.091 176 93 4 193 367 245 398 6.55e-22 99.0
MS.gene072956.t1 AT1G34460 34.091 176 93 4 193 367 248 401 8.30e-22 98.6
MS.gene072956.t1 AT1G14750 34.969 163 96 4 247 405 384 540 6.52e-16 80.9
MS.gene072956.t1 AT1G14750 34.969 163 96 4 247 405 384 540 8.47e-16 80.5
MS.gene072956.t1 AT1G14750 34.969 163 96 4 247 405 216 372 9.17e-16 79.7
MS.gene072956.t1 AT1G14750 34.969 163 95 5 247 405 216 371 1.51e-14 75.9
MS.gene072956.t1 AT5G65420 25.957 235 157 8 182 403 5 235 8.98e-11 63.5

Find 94 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTAAAGGATTCTCAAATT+TGG 0.182649 3.1:+85786347 MS.gene072956:CDS
CAGATCAAGGGCAAAGGTTT+TGG 0.191093 3.1:+85784830 MS.gene072956:CDS
TGGGATTTATACCTGAAAAT+TGG 0.195568 3.1:-85785027 None:intergenic
CGAACTTTGTTGTATATATC+AGG 0.212202 3.1:-85786382 None:intergenic
AACAGTGACTGCACCGGTTT+TGG 0.269524 3.1:-85789258 None:intergenic
CTGCAACTTCTCCATGTAAT+TGG 0.276568 3.1:-85786760 None:intergenic
TACATACCTGAGAAATGTTT+TGG 0.301501 3.1:-85787740 None:intergenic
GAGTGGACGCTCTTCATCTT+TGG 0.302032 3.1:-85784799 None:intergenic
TATTGAAATAAACCTTTGTT+TGG 0.308273 3.1:-85786058 None:intergenic
TCTTGCTGAACTGGAATTCC+TGG 0.315133 3.1:+85788224 MS.gene072956:CDS
ACCGGTGCAGTCACTGTTCC+AGG 0.328369 3.1:+85789263 MS.gene072956:CDS
ACAGGTTCCTCTTGCTGAAC+TGG 0.342894 3.1:+85788215 MS.gene072956:intron
TTCTCCATGTAATTGGTTGA+TGG 0.359361 3.1:-85786753 None:intergenic
CACCATTGCTGCAGTAACTT+TGG 0.388234 3.1:+85785919 MS.gene072956:CDS
TGCAAGTAACACCAAGCAAC+TGG 0.415916 3.1:-85787212 None:intergenic
CAAAACCTTTGCCCTTGATC+TGG 0.423251 3.1:-85784829 None:intergenic
AATAAACCTTTGTTTGGACT+TGG 0.425078 3.1:-85786052 None:intergenic
TCTTCCAGTGCAAGAACAAC+TGG 0.426769 3.1:-85788503 None:intergenic
ACAGTAAGGTAAAGAGTGTC+TGG 0.432601 3.1:-85787138 None:intergenic
AAGAGCAACAGCTTCCAAAA+AGG 0.433513 3.1:+85784881 MS.gene072956:CDS
TGAGTGGTTGAGGGTCCATC+TGG 0.438657 3.1:-85788334 None:intergenic
TGCGTGGAATTCTGATTGAT+TGG 0.439226 3.1:+85786802 MS.gene072956:CDS
ATATATGCAGACTACAACTC+TGG 0.439974 3.1:+85788445 MS.gene072956:intron
GGCAAAACTGTCTCCAAAAC+CGG 0.446811 3.1:+85789245 MS.gene072956:CDS
TAGCTCTGAAGCTTTGTAGT+TGG 0.450188 3.1:-85788477 None:intergenic
AACATGGTCACTTATGTTGT+TGG 0.450701 3.1:-85785969 None:intergenic
TATCGATGTCTACAAAGGTC+AGG 0.459319 3.1:-85786321 None:intergenic
ATGGATGTTCTGAGTGGTTG+AGG 0.460808 3.1:-85788344 None:intergenic
CATAAATTTACACTTGAGCC+TGG 0.467011 3.1:-85789281 None:intergenic
CTGCTGTATTCCTTGCCAGA+TGG 0.472091 3.1:+85788319 MS.gene072956:CDS
CCACAACCAAAACATTTCTC+AGG 0.475913 3.1:+85787734 MS.gene072956:CDS
ATCAGAATTCCACGCATGCT+TGG 0.476428 3.1:-85786795 None:intergenic
CACTCAGAATTACCAGATCA+AGG 0.485115 3.1:+85784817 MS.gene072956:CDS
TTGTGCTGATGAAACTTCAA+TGG 0.487200 3.1:-85785834 None:intergenic
GATCAATGAGGTTCACAGTA+AGG 0.489451 3.1:-85787152 None:intergenic
TGCTTCATGTGACAGTTCAA+TGG 0.489558 3.1:+85789219 MS.gene072956:intron
TGTAAGAAGATTGTGCTGCT+TGG 0.497059 3.1:-85787856 None:intergenic
ATGTTCCTCACCGTAAAAGA+AGG 0.498778 3.1:+85784943 MS.gene072956:CDS
AAAACCAGTTGTTCTTGCAC+TGG 0.503437 3.1:+85788499 MS.gene072956:CDS
CCTCACCGTAAAAGAAGGGC+AGG 0.504738 3.1:+85784948 MS.gene072956:CDS
GGTTTCTGAGGAATATAAGC+TGG 0.509301 3.1:+85787113 MS.gene072956:intron
GAACTTTGTTGTATATATCA+GGG 0.514973 3.1:-85786381 None:intergenic
AATTCTGATTGATTGGCTTG+TGG 0.519075 3.1:+85786809 MS.gene072956:CDS
CATAAATATGATTTGTGAGA+AGG 0.520200 3.1:+85786282 MS.gene072956:CDS
TGAAGTTTCATCAGCACAAG+AGG 0.526624 3.1:+85785838 MS.gene072956:CDS
AGCATGGAGAGAACAACCTT+TGG 0.528068 3.1:-85788540 None:intergenic
TTACTGTGAACCTCATTGAT+CGG 0.529430 3.1:+85787154 MS.gene072956:CDS
TATATTTCTCACGTATAGCA+TGG 0.531941 3.1:-85788556 None:intergenic
TGGATGTTCTGAGTGGTTGA+GGG 0.532302 3.1:-85788343 None:intergenic
TCAACCACTCAGAACATCCA+TGG 0.534173 3.1:+85788346 MS.gene072956:CDS
AAACACAGGCTCCAGTTGCT+TGG 0.536048 3.1:+85787201 MS.gene072956:CDS
AGAATTGTCTACCATAAAGA+TGG 0.537932 3.1:+85785883 MS.gene072956:CDS
GCAGAAGCAGCCACACGAGA+AGG 0.540170 3.1:-85788300 None:intergenic
TTGGACATACAATGTTCAGT+TGG 0.549012 3.1:-85785950 None:intergenic
GGACCCTCTTCGGAAAATGA+AGG 0.550131 3.1:+85784855 MS.gene072956:CDS
ACCTTTGTTTGGACTTGGAG+AGG 0.555698 3.1:-85786047 None:intergenic
AACCAAAGTTACTGCAGCAA+TGG 0.556672 3.1:-85785921 None:intergenic
AAGACCATCAACCAATTACA+TGG 0.561852 3.1:+85786749 MS.gene072956:CDS
TTGTGAGAAGGTAGGAGCCT+CGG 0.564379 3.1:+85786294 MS.gene072956:CDS
CAAGTTTGATTCAGAAACAC+AGG 0.567317 3.1:+85787187 MS.gene072956:CDS
ACAAGAGGATGTTAAAGAGA+AGG 0.567620 3.1:+85785853 MS.gene072956:CDS
AGCAGCACAATCTTCTTACA+AGG 0.568751 3.1:+85787859 MS.gene072956:CDS
GCTCTGCTAAATAATTTGCC+AGG 0.570353 3.1:-85788242 None:intergenic
AACTTTGTTGTATATATCAG+GGG 0.581055 3.1:-85786380 None:intergenic
TGTTTAACACGTTTATCATG+TGG 0.581458 3.1:-85785002 None:intergenic
TGAGAAATATAAACATGAGA+AGG 0.585853 3.1:+85788568 MS.gene072956:CDS
GCCTGGAACAGTGACTGCAC+CGG 0.595943 3.1:-85789264 None:intergenic
GACCCTCTTCGGAAAATGAA+GGG 0.596652 3.1:+85784856 MS.gene072956:CDS
GATCTGCAACTTAATACCAA+AGG 0.597942 3.1:+85788524 MS.gene072956:CDS
ACAGTTTCTACCTTCTCGTG+TGG 0.603003 3.1:+85788290 MS.gene072956:CDS
TCTGATTGATTGGCTTGTGG+AGG 0.610856 3.1:+85786812 MS.gene072956:CDS
TACAAAGGTCAGGCGATCCG+AGG 0.611523 3.1:-85786311 None:intergenic
TAATACATACACAAAAGAAG+AGG 0.613454 3.1:+85787657 MS.gene072956:CDS
GGTTGAGGGTCCATCTGGCA+AGG 0.616376 3.1:-85788329 None:intergenic
AATTACCAGATCAAGGGCAA+AGG 0.620424 3.1:+85784824 MS.gene072956:CDS
TTGAGAGAAACCGATCAATG+AGG 0.621952 3.1:-85787164 None:intergenic
AGGAATTCCAGTTCAGCAAG+AGG 0.623808 3.1:-85788222 None:intergenic
CAGATAACTGAAAACGCAGA+AGG 0.624641 3.1:-85787708 None:intergenic
ACTCAGAATTACCAGATCAA+GGG 0.628344 3.1:+85784818 MS.gene072956:CDS
ATGCAAGAATGTGTGAACTC+TGG 0.628364 3.1:+85786013 MS.gene072956:CDS
AAGCAAAATTCTTCCACTCG+AGG 0.634099 3.1:-85787625 None:intergenic
CAACCACTCAGAACATCCAT+GGG 0.636239 3.1:+85788347 MS.gene072956:CDS
ACATTCTTGCATTGAAAGTG+TGG 0.640397 3.1:-85786002 None:intergenic
TGTTCCTCACCGTAAAAGAA+GGG 0.641902 3.1:+85784944 MS.gene072956:CDS
AATATGATTTGTGAGAAGGT+AGG 0.642690 3.1:+85786286 MS.gene072956:CDS
GATATTTCTCCAAGCATGCG+TGG 0.654313 3.1:+85786786 MS.gene072956:CDS
CTTGATCTGGTAATTCTGAG+TGG 0.660376 3.1:-85784816 None:intergenic
ACCTCTCCAAGTCCAAACAA+AGG 0.667488 3.1:+85786046 MS.gene072956:CDS
ATACCCATGGATGTTCTGAG+TGG 0.668616 3.1:-85788350 None:intergenic
AGAGATGTGTGCTCCTCGAG+TGG 0.670751 3.1:+85787612 MS.gene072956:CDS
CATGTGACAGTTCAATGGTG+TGG 0.678244 3.1:+85789224 MS.gene072956:intron
GTGTGGTGTCTGTCATAACA+TGG 0.706964 3.1:-85785985 None:intergenic
CTCACCGTAAAAGAAGGGCA+GGG 0.713304 3.1:+85784949 MS.gene072956:CDS
CAACAAAGTTCGAGTCACCG+AGG 0.719869 3.1:+85786393 MS.gene072956:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATAAAAAAAGTTACT+AGG + chr3.1:85786169-85786188 MS.gene072956:intron 10.0%
!!! TAATGAAAATTTTATGTTTT+GGG - chr3.1:85785459-85785478 None:intergenic 10.0%
!!! TATAATTTAAAACATGAATT+TGG - chr3.1:85785062-85785081 None:intergenic 10.0%
!! GATTGTTTAATAATGAATTA+CGG - chr3.1:85786424-85786443 None:intergenic 15.0%
!! TATTTATATCTTCTAAACAA+AGG - chr3.1:85788400-85788419 None:intergenic 15.0%
!!! AATTGGTACATTTTATTTTA+TGG - chr3.1:85785353-85785372 None:intergenic 15.0%
!!! ACTTTTTTTATATTATCCAA+AGG - chr3.1:85786165-85786184 None:intergenic 15.0%
!!! CTTTTTTTATATTATCCAAA+GGG - chr3.1:85786164-85786183 None:intergenic 15.0%
!!! GTAATGAAAATTTTATGTTT+TGG - chr3.1:85785460-85785479 None:intergenic 15.0%
!! ATCAATATCACCATATAATT+AGG + chr3.1:85785081-85785100 MS.gene072956:intron 20.0%
!! TATGATAGAATAGAACATTA+TGG + chr3.1:85785164-85785183 MS.gene072956:intron 20.0%
!! TATTGAAATAAACCTTTGTT+TGG - chr3.1:85786061-85786080 None:intergenic 20.0%
!! TCTATTCTTAGTACAAAAAT+AGG - chr3.1:85786661-85786680 None:intergenic 20.0%
!!! AAAACATTGATGATAAGTTT+TGG + chr3.1:85786704-85786723 MS.gene072956:intron 20.0%
!!! AAATCTTTCTGATAGTTTTT+AGG - chr3.1:85785114-85785133 None:intergenic 20.0%
!!! AAGATTTGAAATTAATGAGT+TGG + chr3.1:85785127-85785146 MS.gene072956:intron 20.0%
!!! AATTTAACTTAGTATGTGTT+TGG + chr3.1:85787908-85787927 MS.gene072956:intron 20.0%
!!! ACTAGTATAAAACATGTTTT+AGG + chr3.1:85786098-85786117 MS.gene072956:intron 20.0%
!!! CATAGCTTTATTGAAAAAAA+AGG + chr3.1:85789167-85789186 MS.gene072956:intron 20.0%
!!! CTTTTTTTTCAATAAAGCTA+TGG - chr3.1:85789169-85789188 None:intergenic 20.0%
!!! GTAAGTACTATTTTTTGTAA+TGG + chr3.1:85787248-85787267 MS.gene072956:intron 20.0%
!!! TAAACTTTATCTTGTTATAC+AGG + chr3.1:85788197-85788216 MS.gene072956:intron 20.0%
! AAAAGAAGAGGTAGTAAAAA+TGG + chr3.1:85787669-85787688 MS.gene072956:CDS 25.0%
! AAATTGTAGAATCTCATCTT+AGG + chr3.1:85785537-85785556 MS.gene072956:intron 25.0%
! ACTATCATTTCCTAATGATA+TGG - chr3.1:85785250-85785269 None:intergenic 25.0%
! ACTTCAACAAACTGTAATTA+AGG - chr3.1:85787041-85787060 None:intergenic 25.0%
! AGAATTCTTTGATAAGGTTA+TGG - chr3.1:85786905-85786924 None:intergenic 25.0%
! AGACATCGATAAAAAGTTAA+AGG + chr3.1:85786333-85786352 MS.gene072956:CDS 25.0%
! AGTTAAAGGATTCTCAAATT+TGG + chr3.1:85786347-85786366 MS.gene072956:CDS 25.0%
! ATAGGATATATACAATGTGA+TGG + chr3.1:85786961-85786980 MS.gene072956:intron 25.0%
! CAAAAACATAGTTGAATGAT+AGG + chr3.1:85786943-85786962 MS.gene072956:intron 25.0%
! CTAAGTTAAATTGTAGATAG+TGG - chr3.1:85787900-85787919 None:intergenic 25.0%
! CTGTAAAATGGATAACTAAT+CGG - chr3.1:85785765-85785784 None:intergenic 25.0%
! GTACAAAAATAGGATTACTT+TGG - chr3.1:85786651-85786670 None:intergenic 25.0%
! TAAAATGTACCAATTGAACT+TGG + chr3.1:85785358-85785377 MS.gene072956:intron 25.0%
! TAATACATACACAAAAGAAG+AGG + chr3.1:85787657-85787676 MS.gene072956:CDS 25.0%
! TAGATGAGAATTCTTTGATA+AGG - chr3.1:85786911-85786930 None:intergenic 25.0%
! TCCAAATAGTGCTTATAAAT+AGG + chr3.1:85788871-85788890 MS.gene072956:intron 25.0%
! TCCTATTTATAAGCACTATT+TGG - chr3.1:85788875-85788894 None:intergenic 25.0%
! TGAGAAATATAAACATGAGA+AGG + chr3.1:85788568-85788587 MS.gene072956:CDS 25.0%
! TGTCAAAGATGCTTATAAAA+AGG - chr3.1:85788678-85788697 None:intergenic 25.0%
! TTGATCTATTATTGTCTTTC+AGG + chr3.1:85787825-85787844 MS.gene072956:intron 25.0%
!! AACTTTGTTGTATATATCAG+GGG - chr3.1:85786383-85786402 None:intergenic 25.0%
!! ATGAATTTGGTGACAAAATT+GGG - chr3.1:85785049-85785068 None:intergenic 25.0%
!! CATAAATATGATTTGTGAGA+AGG + chr3.1:85786282-85786301 MS.gene072956:CDS 25.0%
!! GAACTTTGTTGTATATATCA+GGG - chr3.1:85786384-85786403 None:intergenic 25.0%
!! TAAAGAGAAAAGTAGCATTT+TGG - chr3.1:85787435-85787454 None:intergenic 25.0%
!! TAATGAGTTGGACTAAAATA+TGG + chr3.1:85785139-85785158 MS.gene072956:intron 25.0%
!! TCTTTTTGAACTATGAACTA+AGG + chr3.1:85787326-85787345 MS.gene072956:intron 25.0%
!! TGTTAAACAATCCAATTTTC+AGG + chr3.1:85785016-85785035 MS.gene072956:CDS 25.0%
!! TTTTCAATAAAGCTATGGAT+AGG - chr3.1:85789164-85789183 None:intergenic 25.0%
!!! CAACTATGTTTTTGATTGAA+AGG - chr3.1:85786937-85786956 None:intergenic 25.0%
!!! TGTTTTTTCCCAATATCATT+CGG + chr3.1:85787546-85787565 MS.gene072956:intron 25.0%
!!! TTAGCTTTGTGTTTTTCTTT+TGG - chr3.1:85785802-85785821 None:intergenic 25.0%
AACATTGGTCAACTGAAAAA+AGG - chr3.1:85788614-85788633 None:intergenic 30.0%
AAGAATAGAGCAGAATCATT+AGG + chr3.1:85786672-85786691 MS.gene072956:intron 30.0%
AAGATTGTCCAATAGTTAAG+AGG + chr3.1:85785614-85785633 MS.gene072956:intron 30.0%
AATAGATTTGCCTTCAAAGT+TGG + chr3.1:85785395-85785414 MS.gene072956:intron 30.0%
ACTATGAACTAAGGATATCT+AGG + chr3.1:85787335-85787354 MS.gene072956:intron 30.0%
AGAATTGTCTACCATAAAGA+TGG + chr3.1:85785883-85785902 MS.gene072956:CDS 30.0%
AGACAACATGACAGTAATTA+TGG - chr3.1:85786245-85786264 None:intergenic 30.0%
AGGTCTTCTTCCTAATTATA+TGG - chr3.1:85785094-85785113 None:intergenic 30.0%
ATAGATTTGCCTTCAAAGTT+GGG + chr3.1:85785396-85785415 MS.gene072956:intron 30.0%
ATCTTAGACCGAATGATATT+GGG - chr3.1:85787557-85787576 None:intergenic 30.0%
CAAAAGATGTTTCCTCTAAA+GGG - chr3.1:85789100-85789119 None:intergenic 30.0%
CACTCAATAATTGAGAATGT+TGG - chr3.1:85788946-85788965 None:intergenic 30.0%
GATTGATCTATCTAGGTAAT+TGG + chr3.1:85785300-85785319 MS.gene072956:intron 30.0%
GGTGAAATATCTTAGAAGTT+TGG + chr3.1:85786216-85786235 MS.gene072956:intron 30.0%
GGTTATAGTTGCATTTGAAA+TGG + chr3.1:85787010-85787029 MS.gene072956:intron 30.0%
GTTGTTATCACCATATCATT+AGG + chr3.1:85785237-85785256 MS.gene072956:intron 30.0%
TAACTATCACCAAATGCATT+CGG - chr3.1:85787493-85787512 None:intergenic 30.0%
TACAACTCTTTATGATGATC+AGG + chr3.1:85786989-85787008 MS.gene072956:intron 30.0%
TAGGAACAGAGATAGTATAT+AGG + chr3.1:85788890-85788909 MS.gene072956:intron 30.0%
TATATTTCTCACGTATAGCA+TGG - chr3.1:85788559-85788578 None:intergenic 30.0%
TCAATGTAAGCAAGTATTCT+AGG + chr3.1:85786551-85786570 MS.gene072956:intron 30.0%
TCATTTAATCCGAATGCATT+TGG + chr3.1:85787481-85787500 MS.gene072956:intron 30.0%
TGAAAGATGACTTACATTCA+GGG + chr3.1:85788835-85788854 MS.gene072956:intron 30.0%
TGACATTGCAATTTAGCATA+TGG - chr3.1:85786133-85786152 None:intergenic 30.0%
TGATAAGGTTATGGACAAAA+AGG - chr3.1:85786896-85786915 None:intergenic 30.0%
TGGGATTTATACCTGAAAAT+TGG - chr3.1:85785030-85785049 None:intergenic 30.0%
TGTTTAACACGTTTATCATG+TGG - chr3.1:85785005-85785024 None:intergenic 30.0%
TTGAAAGATGACTTACATTC+AGG + chr3.1:85788834-85788853 MS.gene072956:intron 30.0%
! AATAAACCTTTGTTTGGACT+TGG - chr3.1:85786055-85786074 None:intergenic 30.0%
! AATATGATTTGTGAGAAGGT+AGG + chr3.1:85786286-85786305 MS.gene072956:CDS 30.0%
! CATGAATTTGGTGACAAAAT+TGG - chr3.1:85785050-85785069 None:intergenic 30.0%
! CGAACTTTGTTGTATATATC+AGG - chr3.1:85786385-85786404 None:intergenic 30.0%
! CTTTTTATCGATGTCTACAA+AGG - chr3.1:85786329-85786348 None:intergenic 30.0%
! TACATACCTGAGAAATGTTT+TGG - chr3.1:85787743-85787762 None:intergenic 30.0%
! TTTCTTTTGGTAAACTCCTT+TGG - chr3.1:85785789-85785808 None:intergenic 30.0%
!! AAGCTATAAATCCTAGCTTT+TGG - chr3.1:85788049-85788068 None:intergenic 30.0%
!! ATGGATTTTGACATGTTTGA+TGG + chr3.1:85787971-85787990 MS.gene072956:intron 30.0%
!! CGATTAGTTATCCATTTTAC+AGG + chr3.1:85785763-85785782 MS.gene072956:intron 30.0%
!! CTATGTTTTTGATTGAAAGG+CGG - chr3.1:85786934-85786953 None:intergenic 30.0%
!! GACTAGTGGATTTAAAACAT+TGG - chr3.1:85788629-85788648 None:intergenic 30.0%
!! TTTTGACTCTACCATCTTTA+TGG - chr3.1:85785897-85785916 None:intergenic 30.0%
!!! AAGCTTTTTTCAACTAAGTG+GGG - chr3.1:85785213-85785232 None:intergenic 30.0%
!!! ACTATTTTTTGTAATGGTCC+TGG + chr3.1:85787254-85787273 MS.gene072956:intron 30.0%
!!! CAAGCTTTTTTCAACTAAGT+GGG - chr3.1:85785214-85785233 None:intergenic 30.0%
AACATGGTCACTTATGTTGT+TGG - chr3.1:85785972-85785991 None:intergenic 35.0%
AAGACCATCAACCAATTACA+TGG + chr3.1:85786749-85786768 MS.gene072956:CDS 35.0%
AATGAATTACGGACAAACCT+CGG - chr3.1:85786413-85786432 None:intergenic 35.0%
AATGTCATAAGATTGCCCTT+TGG + chr3.1:85786146-85786165 MS.gene072956:intron 35.0%
ACAAGAGGATGTTAAAGAGA+AGG + chr3.1:85785853-85785872 MS.gene072956:CDS 35.0%
ACATGCAGATTGATCTATCT+AGG + chr3.1:85785293-85785312 MS.gene072956:intron 35.0%
ACATTCTTGCATTGAAAGTG+TGG - chr3.1:85786005-85786024 None:intergenic 35.0%
ACTCAGAATTACCAGATCAA+GGG + chr3.1:85784818-85784837 MS.gene072956:CDS 35.0%
ACTTACATACCCAACTTTGA+AGG - chr3.1:85785408-85785427 None:intergenic 35.0%
AGAATTCTAACTCTGAGCAA+CGG - chr3.1:85787293-85787312 None:intergenic 35.0%
AGAGGTAGTAAAAATGGAGA+AGG + chr3.1:85787675-85787694 MS.gene072956:CDS 35.0%
AGTGATTCTAACCAAAAGCT+AGG + chr3.1:85788035-85788054 MS.gene072956:intron 35.0%
AGTTGTATTGTACCCTTTAG+AGG + chr3.1:85789085-85789104 MS.gene072956:intron 35.0%
ATATATGCAGACTACAACTC+TGG + chr3.1:85788445-85788464 MS.gene072956:intron 35.0%
ATTATGGCGTAATTTGATCC+TGG + chr3.1:85785180-85785199 MS.gene072956:intron 35.0%
CAAGTTTGATTCAGAAACAC+AGG + chr3.1:85787187-85787206 MS.gene072956:CDS 35.0%
CATCTTAGACCGAATGATAT+TGG - chr3.1:85787558-85787577 None:intergenic 35.0%
CCACTTAGTTGAAAAAAGCT+TGG + chr3.1:85785212-85785231 MS.gene072956:intron 35.0%
CTAACCTACTCTCTTTACTA+GGG - chr3.1:85785590-85785609 None:intergenic 35.0%
GATCTGCAACTTAATACCAA+AGG + chr3.1:85788524-85788543 MS.gene072956:CDS 35.0%
GCAAAAGATGTTTCCTCTAA+AGG - chr3.1:85789101-85789120 None:intergenic 35.0%
TAGTCAACATTTCATACCCA+TGG - chr3.1:85788366-85788385 None:intergenic 35.0%
TATTCCTCAGAAACCTGAAA+AGG - chr3.1:85787108-85787127 None:intergenic 35.0%
TCAGAAACCTGAAAAGGAAT+AGG - chr3.1:85787102-85787121 None:intergenic 35.0%
TCTAACCTACTCTCTTTACT+AGG - chr3.1:85785591-85785610 None:intergenic 35.0%
TCTCTTCACCTCTTAACTAT+TGG - chr3.1:85785625-85785644 None:intergenic 35.0%
TCTGATTGAGGTTCATAAAC+CGG + chr3.1:85789122-85789141 MS.gene072956:intron 35.0%
TGCAAAATGAAATATGCTCC+TGG - chr3.1:85786581-85786600 None:intergenic 35.0%
TTACTGTGAACCTCATTGAT+CGG + chr3.1:85787154-85787173 MS.gene072956:CDS 35.0%
TTCTCCATGTAATTGGTTGA+TGG - chr3.1:85786756-85786775 None:intergenic 35.0%
TTGGACATACAATGTTCAGT+TGG - chr3.1:85785953-85785972 None:intergenic 35.0%
TTGGTTAGAATCACTTCTTG+AGG - chr3.1:85788030-85788049 None:intergenic 35.0%
TTGTAGAATCTCATCTTAGG+TGG + chr3.1:85785540-85785559 MS.gene072956:intron 35.0%
! ACATCTTTTGCATCTGATTG+AGG + chr3.1:85789110-85789129 MS.gene072956:intron 35.0%
! AGATGCACTTCTTTTCTTCA+TGG + chr3.1:85787573-85787592 MS.gene072956:intron 35.0%
! CTCAGAAGAAACAACCTTTT+TGG - chr3.1:85784898-85784917 None:intergenic 35.0%
! TCTAAAGGGTACAATACAAC+TGG - chr3.1:85789086-85789105 None:intergenic 35.0%
! TTACCATCAAGCTTTTGTTG+TGG + chr3.1:85787061-85787080 MS.gene072956:intron 35.0%
! TTAGTATGTGTTTGGTTTCG+TGG + chr3.1:85787916-85787935 MS.gene072956:intron 35.0%
! TTATCCATTTTACAGGCCAA+AGG + chr3.1:85785770-85785789 MS.gene072956:intron 35.0%
! TTGTGCTGATGAAACTTCAA+TGG - chr3.1:85785837-85785856 None:intergenic 35.0%
!! AAGTGGTTCTAGACACAAAA+TGG + chr3.1:85787952-85787971 MS.gene072956:intron 35.0%
!! AATTCTGATTGATTGGCTTG+TGG + chr3.1:85786809-85786828 MS.gene072956:CDS 35.0%
!! AGGACAGCATATTATTTTGC+CGG - chr3.1:85789144-85789163 None:intergenic 35.0%
!! CTGGATTATTTTATGCTGAC+AGG + chr3.1:85788154-85788173 MS.gene072956:intron 35.0%
!! TTTGTGTCTAGAACCACTTT+TGG - chr3.1:85787951-85787970 None:intergenic 35.0%
!! TTTTGTTGTGGCTTTGCTAA+AGG + chr3.1:85787073-85787092 MS.gene072956:intron 35.0%
!!! CCAAGCTTTTTTCAACTAAG+TGG - chr3.1:85785215-85785234 None:intergenic 35.0%
!!! CTGAGAAATGTTTTGGTTGT+GGG - chr3.1:85787736-85787755 None:intergenic 35.0%
!!! TATTCCTTTTCAGGTTTCTG+AGG + chr3.1:85787101-85787120 MS.gene072956:intron 35.0%
!!! TTTTTTCAACTAAGTGGGGT+CGG - chr3.1:85785209-85785228 None:intergenic 35.0%
AAAACCAGTTGTTCTTGCAC+TGG + chr3.1:85788499-85788518 MS.gene072956:CDS 40.0%
AACCAAAGTTACTGCAGCAA+TGG - chr3.1:85785924-85785943 None:intergenic 40.0%
AACGGGAACTTATGTTAACC+AGG - chr3.1:85787275-85787294 None:intergenic 40.0%
AACTCCTTTGGCCTGTAAAA+TGG - chr3.1:85785777-85785796 None:intergenic 40.0%
AAGAGCAACAGCTTCCAAAA+AGG + chr3.1:85784881-85784900 MS.gene072956:CDS 40.0%
AAGCAAAATTCTTCCACTCG+AGG - chr3.1:85787628-85787647 None:intergenic 40.0%
AAGCCACAACAAAAGCTTGA+TGG - chr3.1:85787067-85787086 None:intergenic 40.0%
AAGCCACTAACTCACTAGAA+AGG + chr3.1:85786195-85786214 MS.gene072956:intron 40.0%
AAGTCAGCTGAAATTGCTAG+AGG + chr3.1:85785424-85785443 MS.gene072956:intron 40.0%
AATTACCAGATCAAGGGCAA+AGG + chr3.1:85784824-85784843 MS.gene072956:CDS 40.0%
ACAGTAAACTGAGGATCGAA+AGG - chr3.1:85787394-85787413 None:intergenic 40.0%
AGCAGCACAATCTTCTTACA+AGG + chr3.1:85787859-85787878 MS.gene072956:CDS 40.0%
AGTCAGCTGAAATTGCTAGA+GGG + chr3.1:85785425-85785444 MS.gene072956:intron 40.0%
ATCATCTCCACAGTAAACTG+AGG - chr3.1:85787403-85787422 None:intergenic 40.0%
ATGCAAGAATGTGTGAACTC+TGG + chr3.1:85786013-85786032 MS.gene072956:CDS 40.0%
ATGTTCCTCACCGTAAAAGA+AGG + chr3.1:85784943-85784962 MS.gene072956:CDS 40.0%
CACTCAGAATTACCAGATCA+AGG + chr3.1:85784817-85784836 MS.gene072956:CDS 40.0%
CACTGAAAATGCTACTCCAT+CGG + chr3.1:85788650-85788669 MS.gene072956:intron 40.0%
CAGATAACTGAAAACGCAGA+AGG - chr3.1:85787711-85787730 None:intergenic 40.0%
CATTGCAAAATCAAACACGC+TGG + chr3.1:85788135-85788154 MS.gene072956:intron 40.0%
CCACAACCAAAACATTTCTC+AGG + chr3.1:85787734-85787753 MS.gene072956:CDS 40.0%
CTGCAACTTCTCCATGTAAT+TGG - chr3.1:85786763-85786782 None:intergenic 40.0%
CTTGATCTGGTAATTCTGAG+TGG - chr3.1:85784819-85784838 None:intergenic 40.0%
GAATTCTAACTCTGAGCAAC+GGG - chr3.1:85787292-85787311 None:intergenic 40.0%
GATCAATGAGGTTCACAGTA+AGG - chr3.1:85787155-85787174 None:intergenic 40.0%
GTGGTAGAGATAACCAAAAG+TGG + chr3.1:85787935-85787954 MS.gene072956:intron 40.0%
TATCGATGTCTACAAAGGTC+AGG - chr3.1:85786324-85786343 None:intergenic 40.0%
TGAAGTTTCATCAGCACAAG+AGG + chr3.1:85785838-85785857 MS.gene072956:CDS 40.0%
TGCGTGGAATTCTGATTGAT+TGG + chr3.1:85786802-85786821 MS.gene072956:CDS 40.0%
TGCTTCATGTGACAGTTCAA+TGG + chr3.1:85789219-85789238 MS.gene072956:intron 40.0%
TGTTCCTCACCGTAAAAGAA+GGG + chr3.1:85784944-85784963 MS.gene072956:CDS 40.0%
TTGAGAGAAACCGATCAATG+AGG - chr3.1:85787167-85787186 None:intergenic 40.0%
TTTCGATCCTCAGTTTACTG+TGG + chr3.1:85787393-85787412 MS.gene072956:intron 40.0%
TTTGCTCGACCAAGTTCAAT+TGG - chr3.1:85785370-85785389 None:intergenic 40.0%
! AGATCAAGGGCAAAGGTTTT+GGG + chr3.1:85784831-85784850 MS.gene072956:CDS 40.0%
! AGCATTTTCAGTGTGACTAG+TGG - chr3.1:85788643-85788662 None:intergenic 40.0%
! GCTCTGCTAAATAATTTGCC+AGG - chr3.1:85788245-85788264 None:intergenic 40.0%
! GGTTTCTGAGGAATATAAGC+TGG + chr3.1:85787113-85787132 MS.gene072956:intron 40.0%
! TCACCTTTCTAGTGAGTTAG+TGG - chr3.1:85786201-85786220 None:intergenic 40.0%
! TGTAAGAAGATTGTGCTGCT+TGG - chr3.1:85787859-85787878 None:intergenic 40.0%
! TTCCCTTCATTTTCCGAAGA+GGG - chr3.1:85784861-85784880 None:intergenic 40.0%
! TTTCCCTTCATTTTCCGAAG+AGG - chr3.1:85784862-85784881 None:intergenic 40.0%
!! AAGGTGTCCTATTCCTTTTC+AGG + chr3.1:85787092-85787111 MS.gene072956:intron 40.0%
!! ACAGTAAGGTAAAGAGTGTC+TGG - chr3.1:85787141-85787160 None:intergenic 40.0%
!! TAGCTCTGAAGCTTTGTAGT+TGG - chr3.1:85788480-85788499 None:intergenic 40.0%
!! TGCTTATAAAAAGGCACCGA+TGG - chr3.1:85788669-85788688 None:intergenic 40.0%
!! TGGAGAAGTACTTGTACACA+CGG - chr3.1:85789066-85789085 None:intergenic 40.0%
!!! CCTGAGAAATGTTTTGGTTG+TGG - chr3.1:85787737-85787756 None:intergenic 40.0%
ACAGTTTCTACCTTCTCGTG+TGG + chr3.1:85788290-85788309 MS.gene072956:CDS 45.0%
ACCTCTCCAAGTCCAAACAA+AGG + chr3.1:85786046-85786065 MS.gene072956:CDS 45.0%
AGCATGGAGAGAACAACCTT+TGG - chr3.1:85788543-85788562 None:intergenic 45.0%
AGGAATTCCAGTTCAGCAAG+AGG - chr3.1:85788225-85788244 None:intergenic 45.0%
ATCAGAATTCCACGCATGCT+TGG - chr3.1:85786798-85786817 None:intergenic 45.0%
CAAAACCTTTGCCCTTGATC+TGG - chr3.1:85784832-85784851 None:intergenic 45.0%
CAACCACTCAGAACATCCAT+GGG + chr3.1:85788347-85788366 MS.gene072956:CDS 45.0%
CACCATTGCTGCAGTAACTT+TGG + chr3.1:85785919-85785938 MS.gene072956:CDS 45.0%
CATGTGACAGTTCAATGGTG+TGG + chr3.1:85789224-85789243 MS.gene072956:intron 45.0%
GACCCTCTTCGGAAAATGAA+GGG + chr3.1:85784856-85784875 MS.gene072956:CDS 45.0%
GAGACCCTAGTAAAGAGAGT+AGG + chr3.1:85785583-85785602 MS.gene072956:intron 45.0%
GATATTTCTCCAAGCATGCG+TGG + chr3.1:85786786-85786805 MS.gene072956:CDS 45.0%
GGCAAAACTGTCTCCAAAAC+CGG + chr3.1:85789245-85789264 MS.gene072956:CDS 45.0%
GTCAGCTGAAATTGCTAGAG+GGG + chr3.1:85785426-85785445 MS.gene072956:intron 45.0%
GTGTGGTGTCTGTCATAACA+TGG - chr3.1:85785988-85786007 None:intergenic 45.0%
TCAACCACTCAGAACATCCA+TGG + chr3.1:85788346-85788365 MS.gene072956:CDS 45.0%
TCTTCCAGTGCAAGAACAAC+TGG - chr3.1:85788506-85788525 None:intergenic 45.0%
TCTTGCTGAACTGGAATTCC+TGG + chr3.1:85788224-85788243 MS.gene072956:CDS 45.0%
TGCAAGTAACACCAAGCAAC+TGG - chr3.1:85787215-85787234 None:intergenic 45.0%
TTAGGTGGTAGAGACATGTG+TGG + chr3.1:85785555-85785574 MS.gene072956:intron 45.0%
! ACCTTTGTTTGGACTTGGAG+AGG - chr3.1:85786050-85786069 None:intergenic 45.0%
! ATACCCATGGATGTTCTGAG+TGG - chr3.1:85788353-85788372 None:intergenic 45.0%
! ATGGATGTTCTGAGTGGTTG+AGG - chr3.1:85788347-85788366 None:intergenic 45.0%
! CAGATCAAGGGCAAAGGTTT+TGG + chr3.1:85784830-85784849 MS.gene072956:CDS 45.0%
! CTTTTACGGTGAGGAACATC+AGG - chr3.1:85784942-85784961 None:intergenic 45.0%
! TAAGCCCTGCCCTTCTTTTA+CGG - chr3.1:85784956-85784975 None:intergenic 45.0%
! TGGATGTTCTGAGTGGTTGA+GGG - chr3.1:85788346-85788365 None:intergenic 45.0%
!! GCAAGTATTCTAGGATAGCC+AGG + chr3.1:85786560-85786579 MS.gene072956:intron 45.0%
!! TCTGATTGATTGGCTTGTGG+AGG + chr3.1:85786812-85786831 MS.gene072956:CDS 45.0%
!! ATTATTATTACTTTATAATA+GGG + chr3.1:85786504-85786523 MS.gene072956:intron 5.0%
!! TATTATTATTACTTTATAAT+AGG + chr3.1:85786503-85786522 MS.gene072956:intron 5.0%
AAACACAGGCTCCAGTTGCT+TGG + chr3.1:85787201-85787220 MS.gene072956:CDS 50.0%
ACAGGTTCCTCTTGCTGAAC+TGG + chr3.1:85788215-85788234 MS.gene072956:intron 50.0%
CAACAAAGTTCGAGTCACCG+AGG + chr3.1:85786393-85786412 MS.gene072956:CDS 50.0%
CTCACCGTAAAAGAAGGGCA+GGG + chr3.1:85784949-85784968 MS.gene072956:CDS 50.0%
CTGCTGTATTCCTTGCCAGA+TGG + chr3.1:85788319-85788338 MS.gene072956:CDS 50.0%
GAGTGGACGCTCTTCATCTT+TGG - chr3.1:85784802-85784821 None:intergenic 50.0%
GGACCCTCTTCGGAAAATGA+AGG + chr3.1:85784855-85784874 MS.gene072956:CDS 50.0%
TTGTGAGAAGGTAGGAGCCT+CGG + chr3.1:85786294-85786313 MS.gene072956:CDS 50.0%
!!! AACAGTGACTGCACCGGTTT+TGG - chr3.1:85789261-85789280 None:intergenic 50.0%
!!! TCAAGGGCAAAGGTTTTGGG+AGG + chr3.1:85784834-85784853 MS.gene072956:CDS 50.0%
AGAGATGTGTGCTCCTCGAG+TGG + chr3.1:85787612-85787631 MS.gene072956:CDS 55.0%
CCTCACCGTAAAAGAAGGGC+AGG + chr3.1:85784948-85784967 MS.gene072956:CDS 55.0%
GCTTGTGGAGGTCAGTCTTG+TGG + chr3.1:85786824-85786843 MS.gene072956:intron 55.0%
TACAAAGGTCAGGCGATCCG+AGG - chr3.1:85786314-85786333 None:intergenic 55.0%
TGAGTGGTTGAGGGTCCATC+TGG - chr3.1:85788337-85788356 None:intergenic 55.0%
! CCTGCCCTTCTTTTACGGTG+AGG - chr3.1:85784951-85784970 None:intergenic 55.0%
! GGAGGTCAGTCTTGTGGCAT+TGG + chr3.1:85786830-85786849 MS.gene072956:intron 55.0%
!!! GGTTTTGGGAGGACCCTCTT+CGG + chr3.1:85784845-85784864 MS.gene072956:CDS 55.0%
ACCGGTGCAGTCACTGTTCC+AGG + chr3.1:85789263-85789282 MS.gene072956:CDS 60.0%
ACTAAGTGGGGTCGGCTACC+AGG - chr3.1:85785201-85785220 None:intergenic 60.0%
GCAGAAGCAGCCACACGAGA+AGG - chr3.1:85788303-85788322 None:intergenic 60.0%
GCCTGGAACAGTGACTGCAC+CGG - chr3.1:85789267-85789286 None:intergenic 60.0%
GGTTGAGGGTCCATCTGGCA+AGG - chr3.1:85788332-85788351 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 85784771 85789296 85784771 ID=MS.gene072956
chr3.1 mRNA 85784771 85789296 85784771 ID=MS.gene072956.t1;Parent=MS.gene072956
chr3.1 exon 85784771 85785037 85784771 ID=MS.gene072956.t1.exon1;Parent=MS.gene072956.t1
chr3.1 CDS 85784771 85785037 85784771 ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1
chr3.1 exon 85785785 85786067 85785785 ID=MS.gene072956.t1.exon2;Parent=MS.gene072956.t1
chr3.1 CDS 85785785 85786067 85785785 ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1
chr3.1 exon 85786281 85786414 85786281 ID=MS.gene072956.t1.exon3;Parent=MS.gene072956.t1
chr3.1 CDS 85786281 85786414 85786281 ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1
chr3.1 exon 85786741 85786833 85786741 ID=MS.gene072956.t1.exon4;Parent=MS.gene072956.t1
chr3.1 CDS 85786741 85786833 85786741 ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1
chr3.1 exon 85787114 85787247 85787114 ID=MS.gene072956.t1.exon5;Parent=MS.gene072956.t1
chr3.1 CDS 85787114 85787247 85787114 ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1
chr3.1 exon 85787603 85787755 85787603 ID=MS.gene072956.t1.exon6;Parent=MS.gene072956.t1
chr3.1 CDS 85787603 85787755 85787603 ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1
chr3.1 exon 85787847 85787880 85787847 ID=MS.gene072956.t1.exon7;Parent=MS.gene072956.t1
chr3.1 CDS 85787847 85787880 85787847 ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1
chr3.1 exon 85788219 85788368 85788219 ID=MS.gene072956.t1.exon8;Parent=MS.gene072956.t1
chr3.1 CDS 85788219 85788368 85788219 ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1
chr3.1 exon 85788455 85788589 85788455 ID=MS.gene072956.t1.exon9;Parent=MS.gene072956.t1
chr3.1 CDS 85788455 85788589 85788455 ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1
chr3.1 exon 85789234 85789296 85789234 ID=MS.gene072956.t1.exon10;Parent=MS.gene072956.t1
chr3.1 CDS 85789234 85789296 85789234 ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1
Gene Sequence

>MS.gene072956

ATGAGTAAAGCAAATAGTACATTGTGTGCCAAAGATGAAGAGCGTCCACTCAGAATTACCAGATCAAGGGCAAAGGTTTTGGGAGGACCCTCTTCGGAAAATGAAGGGAAAAGAGCAACAGCTTCCAAAAAGGTTGTTTCTTCTGAGAATAAAACATGTGTTGCTGTTCCTGATGTTCCTCACCGTAAAAGAAGGGCAGGGCTTACTGATGTAACTAACATCACTGCAAAACCACATGATAAACGTGTTAAACAATCCAATTTTCAGGTATAAATCCCAATTTTGTCACCAAATTCATGTTTTAAATTATATCAATATCACCATATAATTAGGAAGAAGACCTAAAAACTATCAGAAAGATTTGAAATTAATGAGTTGGACTAAAATATGGTTTATGATAGAATAGAACATTATGGCGTAATTTGATCCTGGTAGCCGACCCCACTTAGTTGAAAAAAGCTTGGTTGTTGTTATCACCATATCATTAGGAAATGATAGTTTTTTTTTTTTTTTTTTTTACAAACATGCAGATTGATCTATCTAGGTAATTGGAATGAAAAATTATTAGTGTCATATATGCCATAAAATAAAATGTACCAATTGAACTTGGTCGAGCAAACTCTTAATAGATTTGCCTTCAAAGTTGGGTATGTAAGTCAGCTGAAATTGCTAGAGGGGTTTAGTACCCAAAACATAAAATTTTCATTACACAGCTATAAGACTTGCAATGTTATATGAAAGATACAAAATGCTCTCAATTTTATATAAATTGTAGAATCTCATCTTAGGTGGTAGAGACATGTGTGGAAGCAGAGACCCTAGTAAAGAGAGTAGGTTAGACGAAAGATTGTCCAATAGTTAAGAGGTGAAGAGAACTATTGCAAATAACTCACAACAGATCGAAATAGTTTGTTTTTAGACATGATTCACAATAGAACACTATGACATAATTGTTACTTAGTAGAAAACTTTGTTGCTGTGATTGTTAATGCCGATTAGTTATCCATTTTACAGGCCAAAGGAGTTTACCAAAAGAAAAACACAAAGCTAACTTCAGATGTCTCCATTGAAGTTTCATCAGCACAAGAGGATGTTAAAGAGAAGGTAGCTGAAGAATTGTCTACCATAAAGATGGTAGAGTCAAAAGACACCATTGCTGCAGTAACTTTGGTTGATGAACCAACTGAACATTGTATGTCCAACAACATAAGTGACCATGTTATGACAGACACCACACTTTCAATGCAAGAATGTGTGAACTCTGGTGAACTCGCTACCTCTCCAAGTCCAAACAAAGGTTTATTTCAATAATCTCATATATTTTACTACTAGTATAAAACATGTTTTAGGTATATAATACCATATGCTAAATTGCAATGTCATAAGATTGCCCTTTGGATAATATAAAAAAAGTTACTAGGTGTAAGCCACTAACTCACTAGAAAGGTGAAATATCTTAGAAGTTTGGATACCATAATTACTGTCATGTTGTCTTGATTGTATTGTGCAGACATAAATATGATTTGTGAGAAGGTAGGAGCCTCGGATCGCCTGACCTTTGTAGACATCGATAAAAAGTTAAAGGATTCTCAAATTTGGAGTGCTTATGCCCCTGATATATACAACAAAGTTCGAGTCACCGAGGTTTGTCCGTAATTCATTATTAAACAATCTTATGCTGCACATCTCAACTGCTTCTGCTTTCTTCTTTGTCATAATCTGACTGCATTATTATTATTATTACTTTATAATAGGGTTCTTCAGTTTTAGAGTATAACTTTCAATGTAAGCAAGTATTCTAGGATAGCCAGGAGCATATTTCATTTTGCAATATTTTATATTATTATAATGTCAGTTTTGCTGCATAAGAGAACATTCCAAAGTAATCCTATTTTTGTACTAAGAATAGAGCAGAATCATTAGGTTCACTACAAAAACATTGATGATAAGTTTTGGTGAAATCTCTTCAGCTTGAGAAAAGACCATCAACCAATTACATGGAGAAGTTGCAGCAAGATATTTCTCCAAGCATGCGTGGAATTCTGATTGATTGGCTTGTGGAGGTCAGTCTTGTGGCATTGGCTTCGTGTACATTTATATATTTGAGCAATCTTTAGCTTTTCCTTTTTGTCCATAACCTTATCAAAGAATTCTCATCTACCGCCTTTCAATCAAAAACATAGTTGAATGATAGGATATATACAATGTGATGGATAACTACAACTCTTTATGATGATCAGGTTATAGTTGCATTTGAAATGGAGAATCCTTAATTACAGTTTGTTGAAGTTTACCATCAAGCTTTTGTTGTGGCTTTGCTAAAGGTGTCCTATTCCTTTTCAGGTTTCTGAGGAATATAAGCTGGTTCCAGACACTCTTTACCTTACTGTGAACCTCATTGATCGGTTTCTCTCAACAAGTTTGATTCAGAAACACAGGCTCCAGTTGCTTGGTGTTACTTGCATGTTCATTGCATCGTAAGTACTATTTTTTGTAATGGTCCTGGTTAACATAAGTTCCCGTTGCTCAGAGTTAGAATTCTAGATGATATGTCTTCTTTTTGAACTATGAACTAAGGATATCTAGGCTTTCAAAATGATAAAGCAGATAATGTCAATCACCTTTCGATCCTCAGTTTACTGTGGAGATGATAATTATTTTCCAAAATGCTACTTTTCTCTTTAACTTGTATTTGTTGATTATTCATGAATCATTTAATCCGAATGCATTTGGTGATAGTTACAAGTGATTATCTATTATCTAAGATATCATGTATGTTTTTTCCCAATATCATTCGGTCTAAGATGCACTTCTTTTCTTCATGGCTTAAAGAAAATATGAAGAGATGTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACATACACAAAAGAAGAGGTAGTAAAAATGGAGAAGGAAGTTTTAAACCTTCTGCGTTTTCAGTTATCTGTTCCCACAACCAAAACATTTCTCAGGTATGTAGTGTACTGTTTATTTATTAACACTTTGTTAGAAAATACTACTTAAAACTTCATTGAACTAAGTTGATCTATTATTGTCTTTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGTACTATAGTTGTTATCCACTATCTACAATTTAACTTAGTATGTGTTTGGTTTCGTGGTAGAGATAACCAAAAGTGGTTCTAGACACAAAATGGATTTTGACATGTTTGATGGATGTCAGTTGTAATTGATTTTTATTTTTTTTTGCCTCAAGAAGTGATTCTAACCAAAAGCTAGGATTTATAGCTTTTGACTCTAAATGTGATTTTTACATACAAATTTGCTGTTCAACTTACGTCTAGAATCGATTTTTGACATTGCAAAATCAAACACGCTGGATTATTTTATGCTGACAGGAAAAATGCAACTCAATGCGTTAAACTTTATCTTGTTATACAGGTTCCTCTTGCTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTCGCTCTTGTTGAATACAGCTTCTTACAGTTTCTACCTTCTCGTGTGGCTGCTTCTGCTGTATTCCTTGCCAGATGGACCCTCAACCACTCAGAACATCCATGGGTATGAAATGTTGACTAGTATCAAGTTACCTTTGTTTAGAAGATATAAATAGAAATTTGAAGAGTCGCATGCATTTATATATGCAGACTACAACTCTGGAGCATTTTACCAACTACAAAGCTTCAGAGCTAAAACCAGTTGTTCTTGCACTGGAAGATCTGCAACTTAATACCAAAGGTTGTTCTCTCCATGCTATACGTGAGAAATATAAACATGAGAAGGTTAGAATAACAAACTCTTATCCTTTTTTCAGTTGACCAATGTTTTAAATCCACTAGTCACACTGAAAATGCTACTCCATCGGTGCCTTTTTATAAGCATCTTTGACACTTTTCACATATATTAAGAAAAGTTGATAGTGTGATTGATGTATATTCTGTGTATGACTATCACTAAATTGTCCATTATAATTAGTAGTATTAATATGAGATATATTTTAAAAATAACAAAAATCTATCTAGTAGTTTGAAAGATGACTTACATTCAGGGACACTTTTTTCTCTCCAAATAGTGCTTATAAATAGGAACAGAGATAGTATATAGGAGCAGCAATAGCAATACACTCTTTTTAATTCCAACATTCTCAATTATTGAGTGAAATTCATGTAAGTTTCGTCATTTTAAAAATAAGTCTTGCATAAAGTGATGAGACACATGAATTTCACTAAAAGAGTAATGAAAAGAGAGTGCTAGACCGTGTGTACAAGTACTTCTCCAGTTGTATTGTACCCTTTAGAGGAAACATCTTTTGCATCTGATTGAGGTTCATAAACCGGCAAAATAATATGCTGTCCTATCCATAGCTTTATTGAAAAAAAAGGTATATACATAATTACACAAAATTGACTTTTGCTTCATGTGACAGTTCAATGGTGTGGCAAAACTGTCTCCAAAACCGGTGCAGTCACTGTTCCAGGCTCAAGTGTAA

Protein sequence

>MS.gene072956.t1

MSKANSTLCAKDEERPLRITRSRAKVLGGPSSENEGKRATASKKVVSSENKTCVAVPDVPHRKRRAGLTDVTNITAKPHDKRVKQSNFQAKGVYQKKNTKLTSDVSIEVSSAQEDVKEKVAEELSTIKMVESKDTIAAVTLVDEPTEHCMSNNISDHVMTDTTLSMQECVNSGELATSPSPNKDINMICEKVGASDRLTFVDIDKKLKDSQIWSAYAPDIYNKVRVTELEKRPSTNYMEKLQQDISPSMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSTSLIQKHRLQLLGVTCMFIASKYEEMCAPRVEEFCFITDNTYTKEEVVKMEKEVLNLLRFQLSVPTTKTFLRRFIQAAQSSYKVPLAELEFLANYLAELALVEYSFLQFLPSRVAASAVFLARWTLNHSEHPWTTTLEHFTNYKASELKPVVLALEDLQLNTKGCSLHAIREKYKHEKFNGVAKLSPKPVQSLFQAQV