Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072956.t1 | XP_024635368.1 | 95.4 | 481 | 19 | 1 | 1 | 481 | 1 | 478 | 2.20E-251 | 877.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072956.t1 | Q147G5 | 51.3 | 470 | 167 | 9 | 13 | 477 | 22 | 434 | 2.6e-107 | 390.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072956.t1 | G7JBQ1 | 95.4 | 481 | 19 | 1 | 1 | 481 | 1 | 478 | 1.6e-251 | 877.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049397 | MS.gene072956 | 0.818086 | 2.36E-52 | -1.69E-46 |
MS.gene049418 | MS.gene072956 | 0.811107 | 8.26E-51 | -1.69E-46 |
MS.gene049596 | MS.gene072956 | 0.800454 | 1.43E-48 | -1.69E-46 |
MS.gene049622 | MS.gene072956 | 0.808619 | 2.83E-50 | -1.69E-46 |
MS.gene04985 | MS.gene072956 | 0.812717 | 3.68E-51 | -1.69E-46 |
MS.gene049989 | MS.gene072956 | 0.900857 | 4.81E-78 | -1.69E-46 |
MS.gene050297 | MS.gene072956 | 0.886353 | 3.68E-72 | -1.69E-46 |
MS.gene050310 | MS.gene072956 | 0.80286 | 4.59E-49 | -1.69E-46 |
MS.gene05054 | MS.gene072956 | 0.801284 | 9.68E-49 | -1.69E-46 |
MS.gene051094 | MS.gene072956 | 0.850104 | 2.11E-60 | -1.69E-46 |
MS.gene05124 | MS.gene072956 | 0.806754 | 7.05E-50 | -1.69E-46 |
MS.gene051263 | MS.gene072956 | 0.831814 | 1.35E-55 | -1.69E-46 |
MS.gene051629 | MS.gene072956 | 0.850712 | 1.42E-60 | -1.69E-46 |
MS.gene051742 | MS.gene072956 | 0.830647 | 2.61E-55 | -1.69E-46 |
MS.gene051816 | MS.gene072956 | 0.812496 | 4.12E-51 | -1.69E-46 |
MS.gene051955 | MS.gene072956 | 0.871951 | 4.62E-67 | -1.69E-46 |
MS.gene052143 | MS.gene072956 | 0.862777 | 3.98E-64 | -1.69E-46 |
MS.gene052308 | MS.gene072956 | 0.828555 | 8.42E-55 | -1.69E-46 |
MS.gene052367 | MS.gene072956 | 0.895434 | 9.62E-76 | -1.69E-46 |
MS.gene053173 | MS.gene072956 | 0.832949 | 7.06E-56 | -1.69E-46 |
MS.gene053348 | MS.gene072956 | 0.841679 | 4.11E-58 | -1.69E-46 |
MS.gene053416 | MS.gene072956 | 0.876042 | 1.91E-68 | -1.69E-46 |
MS.gene053417 | MS.gene072956 | 0.8736 | 1.30E-67 | -1.69E-46 |
MS.gene053500 | MS.gene072956 | 0.806017 | 1.01E-49 | -1.69E-46 |
MS.gene05369 | MS.gene072956 | 0.827117 | 1.87E-54 | -1.69E-46 |
MS.gene053929 | MS.gene072956 | 0.819619 | 1.06E-52 | -1.69E-46 |
MS.gene054551 | MS.gene072956 | 0.84582 | 3.20E-59 | -1.69E-46 |
MS.gene054552 | MS.gene072956 | 0.801487 | 8.80E-49 | -1.69E-46 |
MS.gene054593 | MS.gene072956 | 0.831787 | 1.37E-55 | -1.69E-46 |
MS.gene054643 | MS.gene072956 | 0.834962 | 2.21E-56 | -1.69E-46 |
MS.gene055308 | MS.gene072956 | 0.838828 | 2.28E-57 | -1.69E-46 |
MS.gene055411 | MS.gene072956 | 0.83578 | 1.37E-56 | -1.69E-46 |
MS.gene055578 | MS.gene072956 | 0.848256 | 6.88E-60 | -1.69E-46 |
MS.gene055579 | MS.gene072956 | 0.830501 | 2.83E-55 | -1.69E-46 |
MS.gene055781 | MS.gene072956 | 0.808987 | 2.36E-50 | -1.69E-46 |
MS.gene055957 | MS.gene072956 | 0.877634 | 5.37E-69 | -1.69E-46 |
MS.gene056041 | MS.gene072956 | 0.916145 | 2.53E-85 | -1.69E-46 |
MS.gene056042 | MS.gene072956 | 0.886471 | 3.32E-72 | -1.69E-46 |
MS.gene056335 | MS.gene072956 | 0.810478 | 1.13E-50 | -1.69E-46 |
MS.gene05640 | MS.gene072956 | 0.827732 | 1.33E-54 | -1.69E-46 |
MS.gene056526 | MS.gene072956 | 0.889781 | 1.78E-73 | -1.69E-46 |
MS.gene056528 | MS.gene072956 | 0.838205 | 3.30E-57 | -1.69E-46 |
MS.gene057358 | MS.gene072956 | 0.804452 | 2.15E-49 | -1.69E-46 |
MS.gene057458 | MS.gene072956 | 0.830488 | 2.85E-55 | -1.69E-46 |
MS.gene057483 | MS.gene072956 | 0.815454 | 9.17E-52 | -1.69E-46 |
MS.gene058196 | MS.gene072956 | 0.875739 | 2.43E-68 | -1.69E-46 |
MS.gene058197 | MS.gene072956 | 0.881862 | 1.69E-70 | -1.69E-46 |
MS.gene058198 | MS.gene072956 | 0.878271 | 3.21E-69 | -1.69E-46 |
MS.gene058818 | MS.gene072956 | 0.836651 | 8.26E-57 | -1.69E-46 |
MS.gene058827 | MS.gene072956 | 0.816413 | 5.60E-52 | -1.69E-46 |
MS.gene058853 | MS.gene072956 | 0.818004 | 2.46E-52 | -1.69E-46 |
MS.gene059300 | MS.gene072956 | 0.893579 | 5.51E-75 | -1.69E-46 |
MS.gene059553 | MS.gene072956 | 0.851768 | 7.16E-61 | -1.69E-46 |
MS.gene060473 | MS.gene072956 | 0.902473 | 9.35E-79 | -1.69E-46 |
MS.gene060492 | MS.gene072956 | 0.836955 | 6.91E-57 | -1.69E-46 |
MS.gene060565 | MS.gene072956 | 0.906347 | 1.63E-80 | -1.69E-46 |
MS.gene06057 | MS.gene072956 | 0.903416 | 3.55E-79 | -1.69E-46 |
MS.gene06093 | MS.gene072956 | 0.839153 | 1.88E-57 | -1.69E-46 |
MS.gene061099 | MS.gene072956 | 0.891244 | 4.74E-74 | -1.69E-46 |
MS.gene061260 | MS.gene072956 | 0.867383 | 1.42E-65 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene22482 | MS.gene072956 | PPI |
MS.gene065314 | MS.gene072956 | PPI |
MS.gene011448 | MS.gene072956 | PPI |
MS.gene67555 | MS.gene072956 | PPI |
MS.gene072956 | MS.gene044085 | PPI |
MS.gene072956 | MS.gene00478 | PPI |
MS.gene072956 | MS.gene62819 | PPI |
MS.gene061932 | MS.gene072956 | PPI |
MS.gene072956 | MS.gene033401 | PPI |
MS.gene007486 | MS.gene072956 | PPI |
MS.gene89090 | MS.gene072956 | PPI |
MS.gene072956 | MS.gene37226 | PPI |
MS.gene55900 | MS.gene072956 | PPI |
MS.gene072956 | MS.gene09785 | PPI |
MS.gene00474 | MS.gene072956 | PPI |
MS.gene072956 | MS.gene68361 | PPI |
MS.gene072956 | MS.gene00063 | PPI |
MS.gene36424 | MS.gene072956 | PPI |
MS.gene072956 | MS.gene007485 | PPI |
MS.gene072956 | MS.gene71260 | PPI |
MS.gene072956 | MS.gene64859 | PPI |
MS.gene007487 | MS.gene072956 | PPI |
MS.gene28739 | MS.gene072956 | PPI |
MS.gene018518 | MS.gene072956 | PPI |
MS.gene36271 | MS.gene072956 | PPI |
MS.gene67884 | MS.gene072956 | PPI |
MS.gene36273 | MS.gene072956 | PPI |
MS.gene072956 | MS.gene028366 | PPI |
MS.gene072956 | MS.gene24450 | PPI |
MS.gene65301 | MS.gene072956 | PPI |
MS.gene35086 | MS.gene072956 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072956.t1 | MTR_3g107970 | 95.426 | 481 | 19 | 1 | 1 | 481 | 1 | 478 | 0.0 | 947 |
MS.gene072956.t1 | MTR_1g011470 | 58.099 | 463 | 138 | 7 | 17 | 477 | 14 | 422 | 0.0 | 518 |
MS.gene072956.t1 | MTR_2g102520 | 48.354 | 486 | 218 | 13 | 11 | 477 | 8 | 479 | 1.01e-130 | 387 |
MS.gene072956.t1 | MTR_2g102550 | 44.000 | 475 | 202 | 7 | 3 | 469 | 2 | 420 | 9.68e-124 | 368 |
MS.gene072956.t1 | MTR_3g088415 | 54.643 | 280 | 125 | 2 | 201 | 478 | 225 | 504 | 1.08e-103 | 319 |
MS.gene072956.t1 | MTR_3g088405 | 53.704 | 270 | 123 | 1 | 200 | 467 | 227 | 496 | 3.71e-103 | 318 |
MS.gene072956.t1 | MTR_1g018680 | 51.095 | 274 | 132 | 1 | 205 | 476 | 80 | 353 | 3.15e-91 | 282 |
MS.gene072956.t1 | MTR_3g088415 | 58.986 | 217 | 89 | 0 | 200 | 416 | 224 | 440 | 2.11e-90 | 283 |
MS.gene072956.t1 | MTR_3g102530 | 48.029 | 279 | 143 | 1 | 196 | 472 | 64 | 342 | 9.03e-86 | 268 |
MS.gene072956.t1 | MTR_3g102510 | 46.212 | 264 | 142 | 0 | 209 | 472 | 67 | 330 | 8.32e-81 | 254 |
MS.gene072956.t1 | MTR_3g102520 | 46.324 | 272 | 144 | 1 | 203 | 472 | 78 | 349 | 2.80e-79 | 251 |
MS.gene072956.t1 | MTR_3g102560 | 50.787 | 254 | 118 | 2 | 221 | 472 | 69 | 317 | 1.10e-73 | 235 |
MS.gene072956.t1 | MTR_3g102540 | 50.781 | 256 | 116 | 5 | 220 | 472 | 13 | 261 | 2.74e-72 | 230 |
MS.gene072956.t1 | MTR_3g088415 | 62.805 | 164 | 61 | 0 | 200 | 363 | 224 | 387 | 2.44e-71 | 232 |
MS.gene072956.t1 | MTR_5g023790 | 40.959 | 271 | 152 | 4 | 201 | 470 | 156 | 419 | 1.54e-57 | 196 |
MS.gene072956.t1 | MTR_5g088980 | 40.590 | 271 | 152 | 6 | 202 | 470 | 150 | 413 | 2.58e-57 | 196 |
MS.gene072956.t1 | MTR_5g023790 | 43.966 | 232 | 122 | 4 | 201 | 431 | 156 | 380 | 4.14e-55 | 189 |
MS.gene072956.t1 | MTR_8g074000 | 39.608 | 255 | 147 | 3 | 216 | 470 | 176 | 423 | 6.32e-55 | 190 |
MS.gene072956.t1 | MTR_7g089080 | 40.511 | 274 | 154 | 7 | 201 | 470 | 183 | 451 | 2.44e-54 | 197 |
MS.gene072956.t1 | MTR_5g023790 | 44.643 | 168 | 91 | 2 | 201 | 367 | 156 | 322 | 1.56e-39 | 146 |
MS.gene072956.t1 | MTR_3g060770 | 30.556 | 252 | 160 | 7 | 185 | 431 | 2 | 243 | 1.56e-25 | 106 |
MS.gene072956.t1 | MTR_3g061680 | 30.638 | 235 | 149 | 6 | 202 | 431 | 8 | 233 | 8.05e-25 | 104 |
MS.gene072956.t1 | MTR_3g060410 | 34.375 | 192 | 117 | 5 | 245 | 431 | 131 | 318 | 1.00e-24 | 105 |
MS.gene072956.t1 | MTR_3g060400 | 31.250 | 224 | 140 | 6 | 213 | 431 | 25 | 239 | 1.27e-24 | 103 |
MS.gene072956.t1 | MTR_3g460990 | 31.250 | 224 | 140 | 6 | 213 | 431 | 25 | 239 | 1.27e-24 | 103 |
MS.gene072956.t1 | MTR_3g060820 | 30.204 | 245 | 151 | 7 | 192 | 431 | 4 | 233 | 7.76e-24 | 101 |
MS.gene072956.t1 | MTR_1g032850 | 35.359 | 181 | 103 | 5 | 234 | 411 | 362 | 531 | 1.43e-18 | 89.0 |
MS.gene072956.t1 | MTR_5g044040 | 40.260 | 77 | 46 | 0 | 271 | 347 | 7 | 83 | 8.53e-17 | 77.0 |
MS.gene072956.t1 | MTR_5g011900 | 29.730 | 148 | 101 | 2 | 242 | 388 | 95 | 240 | 3.02e-15 | 75.9 |
MS.gene072956.t1 | MTR_3g100710 | 28.571 | 182 | 117 | 4 | 228 | 400 | 74 | 251 | 2.83e-14 | 74.7 |
MS.gene072956.t1 | MTR_6g045270 | 27.972 | 286 | 171 | 13 | 208 | 481 | 38 | 300 | 2.53e-13 | 71.2 |
MS.gene072956.t1 | MTR_4g080990 | 26.816 | 179 | 124 | 4 | 228 | 400 | 69 | 246 | 1.92e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene072956.t1 | AT5G25380 | 51.363 | 477 | 169 | 10 | 10 | 477 | 19 | 441 | 6.39e-147 | 427 |
MS.gene072956.t1 | AT5G11300 | 51.489 | 470 | 166 | 10 | 13 | 477 | 22 | 434 | 6.70e-147 | 427 |
MS.gene072956.t1 | AT5G25380 | 50.420 | 476 | 169 | 8 | 10 | 477 | 19 | 435 | 1.79e-145 | 424 |
MS.gene072956.t1 | AT5G25380 | 50.420 | 476 | 169 | 8 | 10 | 477 | 19 | 435 | 1.79e-145 | 424 |
MS.gene072956.t1 | AT5G25380 | 50.327 | 459 | 162 | 7 | 10 | 461 | 19 | 418 | 6.31e-141 | 411 |
MS.gene072956.t1 | AT1G80370 | 47.072 | 444 | 195 | 6 | 31 | 469 | 42 | 450 | 6.78e-129 | 382 |
MS.gene072956.t1 | AT1G15570 | 48.463 | 423 | 187 | 7 | 62 | 477 | 52 | 450 | 4.51e-126 | 374 |
MS.gene072956.t1 | AT5G11300 | 49.392 | 411 | 147 | 9 | 13 | 419 | 22 | 375 | 8.64e-119 | 355 |
MS.gene072956.t1 | AT1G44110 | 55.147 | 272 | 122 | 0 | 196 | 467 | 174 | 445 | 5.09e-110 | 334 |
MS.gene072956.t1 | AT5G43080 | 52.399 | 271 | 129 | 0 | 202 | 472 | 73 | 343 | 6.86e-100 | 304 |
MS.gene072956.t1 | AT5G43080 | 52.768 | 271 | 123 | 1 | 202 | 472 | 73 | 338 | 5.72e-99 | 301 |
MS.gene072956.t1 | AT1G47210 | 49.324 | 296 | 146 | 2 | 179 | 472 | 67 | 360 | 3.32e-98 | 300 |
MS.gene072956.t1 | AT1G77390 | 52.500 | 280 | 131 | 2 | 200 | 477 | 162 | 441 | 1.18e-96 | 299 |
MS.gene072956.t1 | AT1G47220 | 52.416 | 269 | 126 | 1 | 202 | 468 | 42 | 310 | 1.45e-92 | 284 |
MS.gene072956.t1 | AT1G47230 | 48.905 | 274 | 138 | 1 | 201 | 472 | 80 | 353 | 1.51e-90 | 280 |
MS.gene072956.t1 | AT1G47230 | 48.727 | 275 | 138 | 2 | 201 | 472 | 80 | 354 | 1.06e-88 | 276 |
MS.gene072956.t1 | AT5G06150 | 40.278 | 288 | 161 | 6 | 193 | 479 | 158 | 435 | 6.52e-59 | 201 |
MS.gene072956.t1 | AT1G20610 | 39.114 | 271 | 157 | 4 | 201 | 470 | 161 | 424 | 1.24e-55 | 191 |
MS.gene072956.t1 | AT1G76310 | 40.146 | 274 | 155 | 5 | 199 | 470 | 159 | 425 | 3.63e-55 | 190 |
MS.gene072956.t1 | AT3G11520 | 40.959 | 271 | 151 | 5 | 201 | 470 | 143 | 405 | 1.73e-53 | 185 |
MS.gene072956.t1 | AT1G76310 | 43.404 | 235 | 124 | 5 | 199 | 431 | 159 | 386 | 2.46e-52 | 182 |
MS.gene072956.t1 | AT3G11520 | 44.351 | 239 | 124 | 5 | 201 | 438 | 143 | 373 | 2.69e-52 | 181 |
MS.gene072956.t1 | AT2G26760 | 40.769 | 260 | 143 | 7 | 201 | 457 | 114 | 365 | 4.02e-52 | 181 |
MS.gene072956.t1 | AT1G16330 | 39.216 | 255 | 148 | 3 | 216 | 470 | 395 | 642 | 1.04e-49 | 180 |
MS.gene072956.t1 | AT1G76310 | 36.424 | 302 | 155 | 6 | 199 | 470 | 159 | 453 | 2.59e-49 | 175 |
MS.gene072956.t1 | AT4G37490 | 37.050 | 278 | 160 | 8 | 200 | 470 | 148 | 417 | 5.99e-49 | 174 |
MS.gene072956.t1 | AT2G17620 | 40.672 | 268 | 151 | 4 | 201 | 467 | 155 | 415 | 3.36e-48 | 172 |
MS.gene072956.t1 | AT4G35620 | 39.700 | 267 | 153 | 4 | 201 | 466 | 156 | 415 | 1.63e-47 | 170 |
MS.gene072956.t1 | AT4G35620 | 42.672 | 232 | 125 | 4 | 201 | 431 | 156 | 380 | 6.28e-46 | 164 |
MS.gene072956.t1 | AT5G06150 | 42.045 | 176 | 99 | 3 | 193 | 367 | 158 | 331 | 4.67e-39 | 145 |
MS.gene072956.t1 | AT1G76310 | 45.029 | 171 | 91 | 3 | 199 | 367 | 159 | 328 | 9.31e-39 | 144 |
MS.gene072956.t1 | AT1G20590 | 43.312 | 157 | 83 | 2 | 275 | 431 | 63 | 213 | 3.91e-34 | 129 |
MS.gene072956.t1 | AT1G47210 | 49.219 | 128 | 61 | 2 | 179 | 304 | 67 | 192 | 3.57e-32 | 122 |
MS.gene072956.t1 | AT1G34460 | 34.091 | 176 | 93 | 4 | 193 | 367 | 234 | 387 | 5.45e-22 | 99.0 |
MS.gene072956.t1 | AT1G34460 | 34.091 | 176 | 93 | 4 | 193 | 367 | 248 | 401 | 6.08e-22 | 99.0 |
MS.gene072956.t1 | AT1G34460 | 34.091 | 176 | 93 | 4 | 193 | 367 | 248 | 401 | 6.08e-22 | 99.0 |
MS.gene072956.t1 | AT1G34460 | 34.091 | 176 | 93 | 4 | 193 | 367 | 248 | 401 | 6.08e-22 | 99.0 |
MS.gene072956.t1 | AT1G34460 | 34.091 | 176 | 93 | 4 | 193 | 367 | 248 | 401 | 6.08e-22 | 99.0 |
MS.gene072956.t1 | AT1G34460 | 34.091 | 176 | 93 | 4 | 193 | 367 | 248 | 401 | 6.36e-22 | 99.0 |
MS.gene072956.t1 | AT1G34460 | 34.091 | 176 | 93 | 4 | 193 | 367 | 245 | 398 | 6.55e-22 | 99.0 |
MS.gene072956.t1 | AT1G34460 | 34.091 | 176 | 93 | 4 | 193 | 367 | 245 | 398 | 6.55e-22 | 99.0 |
MS.gene072956.t1 | AT1G34460 | 34.091 | 176 | 93 | 4 | 193 | 367 | 248 | 401 | 8.30e-22 | 98.6 |
MS.gene072956.t1 | AT1G14750 | 34.969 | 163 | 96 | 4 | 247 | 405 | 384 | 540 | 6.52e-16 | 80.9 |
MS.gene072956.t1 | AT1G14750 | 34.969 | 163 | 96 | 4 | 247 | 405 | 384 | 540 | 8.47e-16 | 80.5 |
MS.gene072956.t1 | AT1G14750 | 34.969 | 163 | 96 | 4 | 247 | 405 | 216 | 372 | 9.17e-16 | 79.7 |
MS.gene072956.t1 | AT1G14750 | 34.969 | 163 | 95 | 5 | 247 | 405 | 216 | 371 | 1.51e-14 | 75.9 |
MS.gene072956.t1 | AT5G65420 | 25.957 | 235 | 157 | 8 | 182 | 403 | 5 | 235 | 8.98e-11 | 63.5 |
Find 94 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTTAAAGGATTCTCAAATT+TGG | 0.182649 | 3.1:+85786347 | MS.gene072956:CDS |
CAGATCAAGGGCAAAGGTTT+TGG | 0.191093 | 3.1:+85784830 | MS.gene072956:CDS |
TGGGATTTATACCTGAAAAT+TGG | 0.195568 | 3.1:-85785027 | None:intergenic |
CGAACTTTGTTGTATATATC+AGG | 0.212202 | 3.1:-85786382 | None:intergenic |
AACAGTGACTGCACCGGTTT+TGG | 0.269524 | 3.1:-85789258 | None:intergenic |
CTGCAACTTCTCCATGTAAT+TGG | 0.276568 | 3.1:-85786760 | None:intergenic |
TACATACCTGAGAAATGTTT+TGG | 0.301501 | 3.1:-85787740 | None:intergenic |
GAGTGGACGCTCTTCATCTT+TGG | 0.302032 | 3.1:-85784799 | None:intergenic |
TATTGAAATAAACCTTTGTT+TGG | 0.308273 | 3.1:-85786058 | None:intergenic |
TCTTGCTGAACTGGAATTCC+TGG | 0.315133 | 3.1:+85788224 | MS.gene072956:CDS |
ACCGGTGCAGTCACTGTTCC+AGG | 0.328369 | 3.1:+85789263 | MS.gene072956:CDS |
ACAGGTTCCTCTTGCTGAAC+TGG | 0.342894 | 3.1:+85788215 | MS.gene072956:intron |
TTCTCCATGTAATTGGTTGA+TGG | 0.359361 | 3.1:-85786753 | None:intergenic |
CACCATTGCTGCAGTAACTT+TGG | 0.388234 | 3.1:+85785919 | MS.gene072956:CDS |
TGCAAGTAACACCAAGCAAC+TGG | 0.415916 | 3.1:-85787212 | None:intergenic |
CAAAACCTTTGCCCTTGATC+TGG | 0.423251 | 3.1:-85784829 | None:intergenic |
AATAAACCTTTGTTTGGACT+TGG | 0.425078 | 3.1:-85786052 | None:intergenic |
TCTTCCAGTGCAAGAACAAC+TGG | 0.426769 | 3.1:-85788503 | None:intergenic |
ACAGTAAGGTAAAGAGTGTC+TGG | 0.432601 | 3.1:-85787138 | None:intergenic |
AAGAGCAACAGCTTCCAAAA+AGG | 0.433513 | 3.1:+85784881 | MS.gene072956:CDS |
TGAGTGGTTGAGGGTCCATC+TGG | 0.438657 | 3.1:-85788334 | None:intergenic |
TGCGTGGAATTCTGATTGAT+TGG | 0.439226 | 3.1:+85786802 | MS.gene072956:CDS |
ATATATGCAGACTACAACTC+TGG | 0.439974 | 3.1:+85788445 | MS.gene072956:intron |
GGCAAAACTGTCTCCAAAAC+CGG | 0.446811 | 3.1:+85789245 | MS.gene072956:CDS |
TAGCTCTGAAGCTTTGTAGT+TGG | 0.450188 | 3.1:-85788477 | None:intergenic |
AACATGGTCACTTATGTTGT+TGG | 0.450701 | 3.1:-85785969 | None:intergenic |
TATCGATGTCTACAAAGGTC+AGG | 0.459319 | 3.1:-85786321 | None:intergenic |
ATGGATGTTCTGAGTGGTTG+AGG | 0.460808 | 3.1:-85788344 | None:intergenic |
CATAAATTTACACTTGAGCC+TGG | 0.467011 | 3.1:-85789281 | None:intergenic |
CTGCTGTATTCCTTGCCAGA+TGG | 0.472091 | 3.1:+85788319 | MS.gene072956:CDS |
CCACAACCAAAACATTTCTC+AGG | 0.475913 | 3.1:+85787734 | MS.gene072956:CDS |
ATCAGAATTCCACGCATGCT+TGG | 0.476428 | 3.1:-85786795 | None:intergenic |
CACTCAGAATTACCAGATCA+AGG | 0.485115 | 3.1:+85784817 | MS.gene072956:CDS |
TTGTGCTGATGAAACTTCAA+TGG | 0.487200 | 3.1:-85785834 | None:intergenic |
GATCAATGAGGTTCACAGTA+AGG | 0.489451 | 3.1:-85787152 | None:intergenic |
TGCTTCATGTGACAGTTCAA+TGG | 0.489558 | 3.1:+85789219 | MS.gene072956:intron |
TGTAAGAAGATTGTGCTGCT+TGG | 0.497059 | 3.1:-85787856 | None:intergenic |
ATGTTCCTCACCGTAAAAGA+AGG | 0.498778 | 3.1:+85784943 | MS.gene072956:CDS |
AAAACCAGTTGTTCTTGCAC+TGG | 0.503437 | 3.1:+85788499 | MS.gene072956:CDS |
CCTCACCGTAAAAGAAGGGC+AGG | 0.504738 | 3.1:+85784948 | MS.gene072956:CDS |
GGTTTCTGAGGAATATAAGC+TGG | 0.509301 | 3.1:+85787113 | MS.gene072956:intron |
GAACTTTGTTGTATATATCA+GGG | 0.514973 | 3.1:-85786381 | None:intergenic |
AATTCTGATTGATTGGCTTG+TGG | 0.519075 | 3.1:+85786809 | MS.gene072956:CDS |
CATAAATATGATTTGTGAGA+AGG | 0.520200 | 3.1:+85786282 | MS.gene072956:CDS |
TGAAGTTTCATCAGCACAAG+AGG | 0.526624 | 3.1:+85785838 | MS.gene072956:CDS |
AGCATGGAGAGAACAACCTT+TGG | 0.528068 | 3.1:-85788540 | None:intergenic |
TTACTGTGAACCTCATTGAT+CGG | 0.529430 | 3.1:+85787154 | MS.gene072956:CDS |
TATATTTCTCACGTATAGCA+TGG | 0.531941 | 3.1:-85788556 | None:intergenic |
TGGATGTTCTGAGTGGTTGA+GGG | 0.532302 | 3.1:-85788343 | None:intergenic |
TCAACCACTCAGAACATCCA+TGG | 0.534173 | 3.1:+85788346 | MS.gene072956:CDS |
AAACACAGGCTCCAGTTGCT+TGG | 0.536048 | 3.1:+85787201 | MS.gene072956:CDS |
AGAATTGTCTACCATAAAGA+TGG | 0.537932 | 3.1:+85785883 | MS.gene072956:CDS |
GCAGAAGCAGCCACACGAGA+AGG | 0.540170 | 3.1:-85788300 | None:intergenic |
TTGGACATACAATGTTCAGT+TGG | 0.549012 | 3.1:-85785950 | None:intergenic |
GGACCCTCTTCGGAAAATGA+AGG | 0.550131 | 3.1:+85784855 | MS.gene072956:CDS |
ACCTTTGTTTGGACTTGGAG+AGG | 0.555698 | 3.1:-85786047 | None:intergenic |
AACCAAAGTTACTGCAGCAA+TGG | 0.556672 | 3.1:-85785921 | None:intergenic |
AAGACCATCAACCAATTACA+TGG | 0.561852 | 3.1:+85786749 | MS.gene072956:CDS |
TTGTGAGAAGGTAGGAGCCT+CGG | 0.564379 | 3.1:+85786294 | MS.gene072956:CDS |
CAAGTTTGATTCAGAAACAC+AGG | 0.567317 | 3.1:+85787187 | MS.gene072956:CDS |
ACAAGAGGATGTTAAAGAGA+AGG | 0.567620 | 3.1:+85785853 | MS.gene072956:CDS |
AGCAGCACAATCTTCTTACA+AGG | 0.568751 | 3.1:+85787859 | MS.gene072956:CDS |
GCTCTGCTAAATAATTTGCC+AGG | 0.570353 | 3.1:-85788242 | None:intergenic |
AACTTTGTTGTATATATCAG+GGG | 0.581055 | 3.1:-85786380 | None:intergenic |
TGTTTAACACGTTTATCATG+TGG | 0.581458 | 3.1:-85785002 | None:intergenic |
TGAGAAATATAAACATGAGA+AGG | 0.585853 | 3.1:+85788568 | MS.gene072956:CDS |
GCCTGGAACAGTGACTGCAC+CGG | 0.595943 | 3.1:-85789264 | None:intergenic |
GACCCTCTTCGGAAAATGAA+GGG | 0.596652 | 3.1:+85784856 | MS.gene072956:CDS |
GATCTGCAACTTAATACCAA+AGG | 0.597942 | 3.1:+85788524 | MS.gene072956:CDS |
ACAGTTTCTACCTTCTCGTG+TGG | 0.603003 | 3.1:+85788290 | MS.gene072956:CDS |
TCTGATTGATTGGCTTGTGG+AGG | 0.610856 | 3.1:+85786812 | MS.gene072956:CDS |
TACAAAGGTCAGGCGATCCG+AGG | 0.611523 | 3.1:-85786311 | None:intergenic |
TAATACATACACAAAAGAAG+AGG | 0.613454 | 3.1:+85787657 | MS.gene072956:CDS |
GGTTGAGGGTCCATCTGGCA+AGG | 0.616376 | 3.1:-85788329 | None:intergenic |
AATTACCAGATCAAGGGCAA+AGG | 0.620424 | 3.1:+85784824 | MS.gene072956:CDS |
TTGAGAGAAACCGATCAATG+AGG | 0.621952 | 3.1:-85787164 | None:intergenic |
AGGAATTCCAGTTCAGCAAG+AGG | 0.623808 | 3.1:-85788222 | None:intergenic |
CAGATAACTGAAAACGCAGA+AGG | 0.624641 | 3.1:-85787708 | None:intergenic |
ACTCAGAATTACCAGATCAA+GGG | 0.628344 | 3.1:+85784818 | MS.gene072956:CDS |
ATGCAAGAATGTGTGAACTC+TGG | 0.628364 | 3.1:+85786013 | MS.gene072956:CDS |
AAGCAAAATTCTTCCACTCG+AGG | 0.634099 | 3.1:-85787625 | None:intergenic |
CAACCACTCAGAACATCCAT+GGG | 0.636239 | 3.1:+85788347 | MS.gene072956:CDS |
ACATTCTTGCATTGAAAGTG+TGG | 0.640397 | 3.1:-85786002 | None:intergenic |
TGTTCCTCACCGTAAAAGAA+GGG | 0.641902 | 3.1:+85784944 | MS.gene072956:CDS |
AATATGATTTGTGAGAAGGT+AGG | 0.642690 | 3.1:+85786286 | MS.gene072956:CDS |
GATATTTCTCCAAGCATGCG+TGG | 0.654313 | 3.1:+85786786 | MS.gene072956:CDS |
CTTGATCTGGTAATTCTGAG+TGG | 0.660376 | 3.1:-85784816 | None:intergenic |
ACCTCTCCAAGTCCAAACAA+AGG | 0.667488 | 3.1:+85786046 | MS.gene072956:CDS |
ATACCCATGGATGTTCTGAG+TGG | 0.668616 | 3.1:-85788350 | None:intergenic |
AGAGATGTGTGCTCCTCGAG+TGG | 0.670751 | 3.1:+85787612 | MS.gene072956:CDS |
CATGTGACAGTTCAATGGTG+TGG | 0.678244 | 3.1:+85789224 | MS.gene072956:intron |
GTGTGGTGTCTGTCATAACA+TGG | 0.706964 | 3.1:-85785985 | None:intergenic |
CTCACCGTAAAAGAAGGGCA+GGG | 0.713304 | 3.1:+85784949 | MS.gene072956:CDS |
CAACAAAGTTCGAGTCACCG+AGG | 0.719869 | 3.1:+85786393 | MS.gene072956:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATATAAAAAAAGTTACT+AGG | + | chr3.1:85786169-85786188 | MS.gene072956:intron | 10.0% |
!!! | TAATGAAAATTTTATGTTTT+GGG | - | chr3.1:85785459-85785478 | None:intergenic | 10.0% |
!!! | TATAATTTAAAACATGAATT+TGG | - | chr3.1:85785062-85785081 | None:intergenic | 10.0% |
!! | GATTGTTTAATAATGAATTA+CGG | - | chr3.1:85786424-85786443 | None:intergenic | 15.0% |
!! | TATTTATATCTTCTAAACAA+AGG | - | chr3.1:85788400-85788419 | None:intergenic | 15.0% |
!!! | AATTGGTACATTTTATTTTA+TGG | - | chr3.1:85785353-85785372 | None:intergenic | 15.0% |
!!! | ACTTTTTTTATATTATCCAA+AGG | - | chr3.1:85786165-85786184 | None:intergenic | 15.0% |
!!! | CTTTTTTTATATTATCCAAA+GGG | - | chr3.1:85786164-85786183 | None:intergenic | 15.0% |
!!! | GTAATGAAAATTTTATGTTT+TGG | - | chr3.1:85785460-85785479 | None:intergenic | 15.0% |
!! | ATCAATATCACCATATAATT+AGG | + | chr3.1:85785081-85785100 | MS.gene072956:intron | 20.0% |
!! | TATGATAGAATAGAACATTA+TGG | + | chr3.1:85785164-85785183 | MS.gene072956:intron | 20.0% |
!! | TATTGAAATAAACCTTTGTT+TGG | - | chr3.1:85786061-85786080 | None:intergenic | 20.0% |
!! | TCTATTCTTAGTACAAAAAT+AGG | - | chr3.1:85786661-85786680 | None:intergenic | 20.0% |
!!! | AAAACATTGATGATAAGTTT+TGG | + | chr3.1:85786704-85786723 | MS.gene072956:intron | 20.0% |
!!! | AAATCTTTCTGATAGTTTTT+AGG | - | chr3.1:85785114-85785133 | None:intergenic | 20.0% |
!!! | AAGATTTGAAATTAATGAGT+TGG | + | chr3.1:85785127-85785146 | MS.gene072956:intron | 20.0% |
!!! | AATTTAACTTAGTATGTGTT+TGG | + | chr3.1:85787908-85787927 | MS.gene072956:intron | 20.0% |
!!! | ACTAGTATAAAACATGTTTT+AGG | + | chr3.1:85786098-85786117 | MS.gene072956:intron | 20.0% |
!!! | CATAGCTTTATTGAAAAAAA+AGG | + | chr3.1:85789167-85789186 | MS.gene072956:intron | 20.0% |
!!! | CTTTTTTTTCAATAAAGCTA+TGG | - | chr3.1:85789169-85789188 | None:intergenic | 20.0% |
!!! | GTAAGTACTATTTTTTGTAA+TGG | + | chr3.1:85787248-85787267 | MS.gene072956:intron | 20.0% |
!!! | TAAACTTTATCTTGTTATAC+AGG | + | chr3.1:85788197-85788216 | MS.gene072956:intron | 20.0% |
! | AAAAGAAGAGGTAGTAAAAA+TGG | + | chr3.1:85787669-85787688 | MS.gene072956:CDS | 25.0% |
! | AAATTGTAGAATCTCATCTT+AGG | + | chr3.1:85785537-85785556 | MS.gene072956:intron | 25.0% |
! | ACTATCATTTCCTAATGATA+TGG | - | chr3.1:85785250-85785269 | None:intergenic | 25.0% |
! | ACTTCAACAAACTGTAATTA+AGG | - | chr3.1:85787041-85787060 | None:intergenic | 25.0% |
! | AGAATTCTTTGATAAGGTTA+TGG | - | chr3.1:85786905-85786924 | None:intergenic | 25.0% |
! | AGACATCGATAAAAAGTTAA+AGG | + | chr3.1:85786333-85786352 | MS.gene072956:CDS | 25.0% |
! | AGTTAAAGGATTCTCAAATT+TGG | + | chr3.1:85786347-85786366 | MS.gene072956:CDS | 25.0% |
! | ATAGGATATATACAATGTGA+TGG | + | chr3.1:85786961-85786980 | MS.gene072956:intron | 25.0% |
! | CAAAAACATAGTTGAATGAT+AGG | + | chr3.1:85786943-85786962 | MS.gene072956:intron | 25.0% |
! | CTAAGTTAAATTGTAGATAG+TGG | - | chr3.1:85787900-85787919 | None:intergenic | 25.0% |
! | CTGTAAAATGGATAACTAAT+CGG | - | chr3.1:85785765-85785784 | None:intergenic | 25.0% |
! | GTACAAAAATAGGATTACTT+TGG | - | chr3.1:85786651-85786670 | None:intergenic | 25.0% |
! | TAAAATGTACCAATTGAACT+TGG | + | chr3.1:85785358-85785377 | MS.gene072956:intron | 25.0% |
! | TAATACATACACAAAAGAAG+AGG | + | chr3.1:85787657-85787676 | MS.gene072956:CDS | 25.0% |
! | TAGATGAGAATTCTTTGATA+AGG | - | chr3.1:85786911-85786930 | None:intergenic | 25.0% |
! | TCCAAATAGTGCTTATAAAT+AGG | + | chr3.1:85788871-85788890 | MS.gene072956:intron | 25.0% |
! | TCCTATTTATAAGCACTATT+TGG | - | chr3.1:85788875-85788894 | None:intergenic | 25.0% |
! | TGAGAAATATAAACATGAGA+AGG | + | chr3.1:85788568-85788587 | MS.gene072956:CDS | 25.0% |
! | TGTCAAAGATGCTTATAAAA+AGG | - | chr3.1:85788678-85788697 | None:intergenic | 25.0% |
! | TTGATCTATTATTGTCTTTC+AGG | + | chr3.1:85787825-85787844 | MS.gene072956:intron | 25.0% |
!! | AACTTTGTTGTATATATCAG+GGG | - | chr3.1:85786383-85786402 | None:intergenic | 25.0% |
!! | ATGAATTTGGTGACAAAATT+GGG | - | chr3.1:85785049-85785068 | None:intergenic | 25.0% |
!! | CATAAATATGATTTGTGAGA+AGG | + | chr3.1:85786282-85786301 | MS.gene072956:CDS | 25.0% |
!! | GAACTTTGTTGTATATATCA+GGG | - | chr3.1:85786384-85786403 | None:intergenic | 25.0% |
!! | TAAAGAGAAAAGTAGCATTT+TGG | - | chr3.1:85787435-85787454 | None:intergenic | 25.0% |
!! | TAATGAGTTGGACTAAAATA+TGG | + | chr3.1:85785139-85785158 | MS.gene072956:intron | 25.0% |
!! | TCTTTTTGAACTATGAACTA+AGG | + | chr3.1:85787326-85787345 | MS.gene072956:intron | 25.0% |
!! | TGTTAAACAATCCAATTTTC+AGG | + | chr3.1:85785016-85785035 | MS.gene072956:CDS | 25.0% |
!! | TTTTCAATAAAGCTATGGAT+AGG | - | chr3.1:85789164-85789183 | None:intergenic | 25.0% |
!!! | CAACTATGTTTTTGATTGAA+AGG | - | chr3.1:85786937-85786956 | None:intergenic | 25.0% |
!!! | TGTTTTTTCCCAATATCATT+CGG | + | chr3.1:85787546-85787565 | MS.gene072956:intron | 25.0% |
!!! | TTAGCTTTGTGTTTTTCTTT+TGG | - | chr3.1:85785802-85785821 | None:intergenic | 25.0% |
AACATTGGTCAACTGAAAAA+AGG | - | chr3.1:85788614-85788633 | None:intergenic | 30.0% | |
AAGAATAGAGCAGAATCATT+AGG | + | chr3.1:85786672-85786691 | MS.gene072956:intron | 30.0% | |
AAGATTGTCCAATAGTTAAG+AGG | + | chr3.1:85785614-85785633 | MS.gene072956:intron | 30.0% | |
AATAGATTTGCCTTCAAAGT+TGG | + | chr3.1:85785395-85785414 | MS.gene072956:intron | 30.0% | |
ACTATGAACTAAGGATATCT+AGG | + | chr3.1:85787335-85787354 | MS.gene072956:intron | 30.0% | |
AGAATTGTCTACCATAAAGA+TGG | + | chr3.1:85785883-85785902 | MS.gene072956:CDS | 30.0% | |
AGACAACATGACAGTAATTA+TGG | - | chr3.1:85786245-85786264 | None:intergenic | 30.0% | |
AGGTCTTCTTCCTAATTATA+TGG | - | chr3.1:85785094-85785113 | None:intergenic | 30.0% | |
ATAGATTTGCCTTCAAAGTT+GGG | + | chr3.1:85785396-85785415 | MS.gene072956:intron | 30.0% | |
ATCTTAGACCGAATGATATT+GGG | - | chr3.1:85787557-85787576 | None:intergenic | 30.0% | |
CAAAAGATGTTTCCTCTAAA+GGG | - | chr3.1:85789100-85789119 | None:intergenic | 30.0% | |
CACTCAATAATTGAGAATGT+TGG | - | chr3.1:85788946-85788965 | None:intergenic | 30.0% | |
GATTGATCTATCTAGGTAAT+TGG | + | chr3.1:85785300-85785319 | MS.gene072956:intron | 30.0% | |
GGTGAAATATCTTAGAAGTT+TGG | + | chr3.1:85786216-85786235 | MS.gene072956:intron | 30.0% | |
GGTTATAGTTGCATTTGAAA+TGG | + | chr3.1:85787010-85787029 | MS.gene072956:intron | 30.0% | |
GTTGTTATCACCATATCATT+AGG | + | chr3.1:85785237-85785256 | MS.gene072956:intron | 30.0% | |
TAACTATCACCAAATGCATT+CGG | - | chr3.1:85787493-85787512 | None:intergenic | 30.0% | |
TACAACTCTTTATGATGATC+AGG | + | chr3.1:85786989-85787008 | MS.gene072956:intron | 30.0% | |
TAGGAACAGAGATAGTATAT+AGG | + | chr3.1:85788890-85788909 | MS.gene072956:intron | 30.0% | |
TATATTTCTCACGTATAGCA+TGG | - | chr3.1:85788559-85788578 | None:intergenic | 30.0% | |
TCAATGTAAGCAAGTATTCT+AGG | + | chr3.1:85786551-85786570 | MS.gene072956:intron | 30.0% | |
TCATTTAATCCGAATGCATT+TGG | + | chr3.1:85787481-85787500 | MS.gene072956:intron | 30.0% | |
TGAAAGATGACTTACATTCA+GGG | + | chr3.1:85788835-85788854 | MS.gene072956:intron | 30.0% | |
TGACATTGCAATTTAGCATA+TGG | - | chr3.1:85786133-85786152 | None:intergenic | 30.0% | |
TGATAAGGTTATGGACAAAA+AGG | - | chr3.1:85786896-85786915 | None:intergenic | 30.0% | |
TGGGATTTATACCTGAAAAT+TGG | - | chr3.1:85785030-85785049 | None:intergenic | 30.0% | |
TGTTTAACACGTTTATCATG+TGG | - | chr3.1:85785005-85785024 | None:intergenic | 30.0% | |
TTGAAAGATGACTTACATTC+AGG | + | chr3.1:85788834-85788853 | MS.gene072956:intron | 30.0% | |
! | AATAAACCTTTGTTTGGACT+TGG | - | chr3.1:85786055-85786074 | None:intergenic | 30.0% |
! | AATATGATTTGTGAGAAGGT+AGG | + | chr3.1:85786286-85786305 | MS.gene072956:CDS | 30.0% |
! | CATGAATTTGGTGACAAAAT+TGG | - | chr3.1:85785050-85785069 | None:intergenic | 30.0% |
! | CGAACTTTGTTGTATATATC+AGG | - | chr3.1:85786385-85786404 | None:intergenic | 30.0% |
! | CTTTTTATCGATGTCTACAA+AGG | - | chr3.1:85786329-85786348 | None:intergenic | 30.0% |
! | TACATACCTGAGAAATGTTT+TGG | - | chr3.1:85787743-85787762 | None:intergenic | 30.0% |
! | TTTCTTTTGGTAAACTCCTT+TGG | - | chr3.1:85785789-85785808 | None:intergenic | 30.0% |
!! | AAGCTATAAATCCTAGCTTT+TGG | - | chr3.1:85788049-85788068 | None:intergenic | 30.0% |
!! | ATGGATTTTGACATGTTTGA+TGG | + | chr3.1:85787971-85787990 | MS.gene072956:intron | 30.0% |
!! | CGATTAGTTATCCATTTTAC+AGG | + | chr3.1:85785763-85785782 | MS.gene072956:intron | 30.0% |
!! | CTATGTTTTTGATTGAAAGG+CGG | - | chr3.1:85786934-85786953 | None:intergenic | 30.0% |
!! | GACTAGTGGATTTAAAACAT+TGG | - | chr3.1:85788629-85788648 | None:intergenic | 30.0% |
!! | TTTTGACTCTACCATCTTTA+TGG | - | chr3.1:85785897-85785916 | None:intergenic | 30.0% |
!!! | AAGCTTTTTTCAACTAAGTG+GGG | - | chr3.1:85785213-85785232 | None:intergenic | 30.0% |
!!! | ACTATTTTTTGTAATGGTCC+TGG | + | chr3.1:85787254-85787273 | MS.gene072956:intron | 30.0% |
!!! | CAAGCTTTTTTCAACTAAGT+GGG | - | chr3.1:85785214-85785233 | None:intergenic | 30.0% |
AACATGGTCACTTATGTTGT+TGG | - | chr3.1:85785972-85785991 | None:intergenic | 35.0% | |
AAGACCATCAACCAATTACA+TGG | + | chr3.1:85786749-85786768 | MS.gene072956:CDS | 35.0% | |
AATGAATTACGGACAAACCT+CGG | - | chr3.1:85786413-85786432 | None:intergenic | 35.0% | |
AATGTCATAAGATTGCCCTT+TGG | + | chr3.1:85786146-85786165 | MS.gene072956:intron | 35.0% | |
ACAAGAGGATGTTAAAGAGA+AGG | + | chr3.1:85785853-85785872 | MS.gene072956:CDS | 35.0% | |
ACATGCAGATTGATCTATCT+AGG | + | chr3.1:85785293-85785312 | MS.gene072956:intron | 35.0% | |
ACATTCTTGCATTGAAAGTG+TGG | - | chr3.1:85786005-85786024 | None:intergenic | 35.0% | |
ACTCAGAATTACCAGATCAA+GGG | + | chr3.1:85784818-85784837 | MS.gene072956:CDS | 35.0% | |
ACTTACATACCCAACTTTGA+AGG | - | chr3.1:85785408-85785427 | None:intergenic | 35.0% | |
AGAATTCTAACTCTGAGCAA+CGG | - | chr3.1:85787293-85787312 | None:intergenic | 35.0% | |
AGAGGTAGTAAAAATGGAGA+AGG | + | chr3.1:85787675-85787694 | MS.gene072956:CDS | 35.0% | |
AGTGATTCTAACCAAAAGCT+AGG | + | chr3.1:85788035-85788054 | MS.gene072956:intron | 35.0% | |
AGTTGTATTGTACCCTTTAG+AGG | + | chr3.1:85789085-85789104 | MS.gene072956:intron | 35.0% | |
ATATATGCAGACTACAACTC+TGG | + | chr3.1:85788445-85788464 | MS.gene072956:intron | 35.0% | |
ATTATGGCGTAATTTGATCC+TGG | + | chr3.1:85785180-85785199 | MS.gene072956:intron | 35.0% | |
CAAGTTTGATTCAGAAACAC+AGG | + | chr3.1:85787187-85787206 | MS.gene072956:CDS | 35.0% | |
CATCTTAGACCGAATGATAT+TGG | - | chr3.1:85787558-85787577 | None:intergenic | 35.0% | |
CCACTTAGTTGAAAAAAGCT+TGG | + | chr3.1:85785212-85785231 | MS.gene072956:intron | 35.0% | |
CTAACCTACTCTCTTTACTA+GGG | - | chr3.1:85785590-85785609 | None:intergenic | 35.0% | |
GATCTGCAACTTAATACCAA+AGG | + | chr3.1:85788524-85788543 | MS.gene072956:CDS | 35.0% | |
GCAAAAGATGTTTCCTCTAA+AGG | - | chr3.1:85789101-85789120 | None:intergenic | 35.0% | |
TAGTCAACATTTCATACCCA+TGG | - | chr3.1:85788366-85788385 | None:intergenic | 35.0% | |
TATTCCTCAGAAACCTGAAA+AGG | - | chr3.1:85787108-85787127 | None:intergenic | 35.0% | |
TCAGAAACCTGAAAAGGAAT+AGG | - | chr3.1:85787102-85787121 | None:intergenic | 35.0% | |
TCTAACCTACTCTCTTTACT+AGG | - | chr3.1:85785591-85785610 | None:intergenic | 35.0% | |
TCTCTTCACCTCTTAACTAT+TGG | - | chr3.1:85785625-85785644 | None:intergenic | 35.0% | |
TCTGATTGAGGTTCATAAAC+CGG | + | chr3.1:85789122-85789141 | MS.gene072956:intron | 35.0% | |
TGCAAAATGAAATATGCTCC+TGG | - | chr3.1:85786581-85786600 | None:intergenic | 35.0% | |
TTACTGTGAACCTCATTGAT+CGG | + | chr3.1:85787154-85787173 | MS.gene072956:CDS | 35.0% | |
TTCTCCATGTAATTGGTTGA+TGG | - | chr3.1:85786756-85786775 | None:intergenic | 35.0% | |
TTGGACATACAATGTTCAGT+TGG | - | chr3.1:85785953-85785972 | None:intergenic | 35.0% | |
TTGGTTAGAATCACTTCTTG+AGG | - | chr3.1:85788030-85788049 | None:intergenic | 35.0% | |
TTGTAGAATCTCATCTTAGG+TGG | + | chr3.1:85785540-85785559 | MS.gene072956:intron | 35.0% | |
! | ACATCTTTTGCATCTGATTG+AGG | + | chr3.1:85789110-85789129 | MS.gene072956:intron | 35.0% |
! | AGATGCACTTCTTTTCTTCA+TGG | + | chr3.1:85787573-85787592 | MS.gene072956:intron | 35.0% |
! | CTCAGAAGAAACAACCTTTT+TGG | - | chr3.1:85784898-85784917 | None:intergenic | 35.0% |
! | TCTAAAGGGTACAATACAAC+TGG | - | chr3.1:85789086-85789105 | None:intergenic | 35.0% |
! | TTACCATCAAGCTTTTGTTG+TGG | + | chr3.1:85787061-85787080 | MS.gene072956:intron | 35.0% |
! | TTAGTATGTGTTTGGTTTCG+TGG | + | chr3.1:85787916-85787935 | MS.gene072956:intron | 35.0% |
! | TTATCCATTTTACAGGCCAA+AGG | + | chr3.1:85785770-85785789 | MS.gene072956:intron | 35.0% |
! | TTGTGCTGATGAAACTTCAA+TGG | - | chr3.1:85785837-85785856 | None:intergenic | 35.0% |
!! | AAGTGGTTCTAGACACAAAA+TGG | + | chr3.1:85787952-85787971 | MS.gene072956:intron | 35.0% |
!! | AATTCTGATTGATTGGCTTG+TGG | + | chr3.1:85786809-85786828 | MS.gene072956:CDS | 35.0% |
!! | AGGACAGCATATTATTTTGC+CGG | - | chr3.1:85789144-85789163 | None:intergenic | 35.0% |
!! | CTGGATTATTTTATGCTGAC+AGG | + | chr3.1:85788154-85788173 | MS.gene072956:intron | 35.0% |
!! | TTTGTGTCTAGAACCACTTT+TGG | - | chr3.1:85787951-85787970 | None:intergenic | 35.0% |
!! | TTTTGTTGTGGCTTTGCTAA+AGG | + | chr3.1:85787073-85787092 | MS.gene072956:intron | 35.0% |
!!! | CCAAGCTTTTTTCAACTAAG+TGG | - | chr3.1:85785215-85785234 | None:intergenic | 35.0% |
!!! | CTGAGAAATGTTTTGGTTGT+GGG | - | chr3.1:85787736-85787755 | None:intergenic | 35.0% |
!!! | TATTCCTTTTCAGGTTTCTG+AGG | + | chr3.1:85787101-85787120 | MS.gene072956:intron | 35.0% |
!!! | TTTTTTCAACTAAGTGGGGT+CGG | - | chr3.1:85785209-85785228 | None:intergenic | 35.0% |
AAAACCAGTTGTTCTTGCAC+TGG | + | chr3.1:85788499-85788518 | MS.gene072956:CDS | 40.0% | |
AACCAAAGTTACTGCAGCAA+TGG | - | chr3.1:85785924-85785943 | None:intergenic | 40.0% | |
AACGGGAACTTATGTTAACC+AGG | - | chr3.1:85787275-85787294 | None:intergenic | 40.0% | |
AACTCCTTTGGCCTGTAAAA+TGG | - | chr3.1:85785777-85785796 | None:intergenic | 40.0% | |
AAGAGCAACAGCTTCCAAAA+AGG | + | chr3.1:85784881-85784900 | MS.gene072956:CDS | 40.0% | |
AAGCAAAATTCTTCCACTCG+AGG | - | chr3.1:85787628-85787647 | None:intergenic | 40.0% | |
AAGCCACAACAAAAGCTTGA+TGG | - | chr3.1:85787067-85787086 | None:intergenic | 40.0% | |
AAGCCACTAACTCACTAGAA+AGG | + | chr3.1:85786195-85786214 | MS.gene072956:intron | 40.0% | |
AAGTCAGCTGAAATTGCTAG+AGG | + | chr3.1:85785424-85785443 | MS.gene072956:intron | 40.0% | |
AATTACCAGATCAAGGGCAA+AGG | + | chr3.1:85784824-85784843 | MS.gene072956:CDS | 40.0% | |
ACAGTAAACTGAGGATCGAA+AGG | - | chr3.1:85787394-85787413 | None:intergenic | 40.0% | |
AGCAGCACAATCTTCTTACA+AGG | + | chr3.1:85787859-85787878 | MS.gene072956:CDS | 40.0% | |
AGTCAGCTGAAATTGCTAGA+GGG | + | chr3.1:85785425-85785444 | MS.gene072956:intron | 40.0% | |
ATCATCTCCACAGTAAACTG+AGG | - | chr3.1:85787403-85787422 | None:intergenic | 40.0% | |
ATGCAAGAATGTGTGAACTC+TGG | + | chr3.1:85786013-85786032 | MS.gene072956:CDS | 40.0% | |
ATGTTCCTCACCGTAAAAGA+AGG | + | chr3.1:85784943-85784962 | MS.gene072956:CDS | 40.0% | |
CACTCAGAATTACCAGATCA+AGG | + | chr3.1:85784817-85784836 | MS.gene072956:CDS | 40.0% | |
CACTGAAAATGCTACTCCAT+CGG | + | chr3.1:85788650-85788669 | MS.gene072956:intron | 40.0% | |
CAGATAACTGAAAACGCAGA+AGG | - | chr3.1:85787711-85787730 | None:intergenic | 40.0% | |
CATTGCAAAATCAAACACGC+TGG | + | chr3.1:85788135-85788154 | MS.gene072956:intron | 40.0% | |
CCACAACCAAAACATTTCTC+AGG | + | chr3.1:85787734-85787753 | MS.gene072956:CDS | 40.0% | |
CTGCAACTTCTCCATGTAAT+TGG | - | chr3.1:85786763-85786782 | None:intergenic | 40.0% | |
CTTGATCTGGTAATTCTGAG+TGG | - | chr3.1:85784819-85784838 | None:intergenic | 40.0% | |
GAATTCTAACTCTGAGCAAC+GGG | - | chr3.1:85787292-85787311 | None:intergenic | 40.0% | |
GATCAATGAGGTTCACAGTA+AGG | - | chr3.1:85787155-85787174 | None:intergenic | 40.0% | |
GTGGTAGAGATAACCAAAAG+TGG | + | chr3.1:85787935-85787954 | MS.gene072956:intron | 40.0% | |
TATCGATGTCTACAAAGGTC+AGG | - | chr3.1:85786324-85786343 | None:intergenic | 40.0% | |
TGAAGTTTCATCAGCACAAG+AGG | + | chr3.1:85785838-85785857 | MS.gene072956:CDS | 40.0% | |
TGCGTGGAATTCTGATTGAT+TGG | + | chr3.1:85786802-85786821 | MS.gene072956:CDS | 40.0% | |
TGCTTCATGTGACAGTTCAA+TGG | + | chr3.1:85789219-85789238 | MS.gene072956:intron | 40.0% | |
TGTTCCTCACCGTAAAAGAA+GGG | + | chr3.1:85784944-85784963 | MS.gene072956:CDS | 40.0% | |
TTGAGAGAAACCGATCAATG+AGG | - | chr3.1:85787167-85787186 | None:intergenic | 40.0% | |
TTTCGATCCTCAGTTTACTG+TGG | + | chr3.1:85787393-85787412 | MS.gene072956:intron | 40.0% | |
TTTGCTCGACCAAGTTCAAT+TGG | - | chr3.1:85785370-85785389 | None:intergenic | 40.0% | |
! | AGATCAAGGGCAAAGGTTTT+GGG | + | chr3.1:85784831-85784850 | MS.gene072956:CDS | 40.0% |
! | AGCATTTTCAGTGTGACTAG+TGG | - | chr3.1:85788643-85788662 | None:intergenic | 40.0% |
! | GCTCTGCTAAATAATTTGCC+AGG | - | chr3.1:85788245-85788264 | None:intergenic | 40.0% |
! | GGTTTCTGAGGAATATAAGC+TGG | + | chr3.1:85787113-85787132 | MS.gene072956:intron | 40.0% |
! | TCACCTTTCTAGTGAGTTAG+TGG | - | chr3.1:85786201-85786220 | None:intergenic | 40.0% |
! | TGTAAGAAGATTGTGCTGCT+TGG | - | chr3.1:85787859-85787878 | None:intergenic | 40.0% |
! | TTCCCTTCATTTTCCGAAGA+GGG | - | chr3.1:85784861-85784880 | None:intergenic | 40.0% |
! | TTTCCCTTCATTTTCCGAAG+AGG | - | chr3.1:85784862-85784881 | None:intergenic | 40.0% |
!! | AAGGTGTCCTATTCCTTTTC+AGG | + | chr3.1:85787092-85787111 | MS.gene072956:intron | 40.0% |
!! | ACAGTAAGGTAAAGAGTGTC+TGG | - | chr3.1:85787141-85787160 | None:intergenic | 40.0% |
!! | TAGCTCTGAAGCTTTGTAGT+TGG | - | chr3.1:85788480-85788499 | None:intergenic | 40.0% |
!! | TGCTTATAAAAAGGCACCGA+TGG | - | chr3.1:85788669-85788688 | None:intergenic | 40.0% |
!! | TGGAGAAGTACTTGTACACA+CGG | - | chr3.1:85789066-85789085 | None:intergenic | 40.0% |
!!! | CCTGAGAAATGTTTTGGTTG+TGG | - | chr3.1:85787737-85787756 | None:intergenic | 40.0% |
ACAGTTTCTACCTTCTCGTG+TGG | + | chr3.1:85788290-85788309 | MS.gene072956:CDS | 45.0% | |
ACCTCTCCAAGTCCAAACAA+AGG | + | chr3.1:85786046-85786065 | MS.gene072956:CDS | 45.0% | |
AGCATGGAGAGAACAACCTT+TGG | - | chr3.1:85788543-85788562 | None:intergenic | 45.0% | |
AGGAATTCCAGTTCAGCAAG+AGG | - | chr3.1:85788225-85788244 | None:intergenic | 45.0% | |
ATCAGAATTCCACGCATGCT+TGG | - | chr3.1:85786798-85786817 | None:intergenic | 45.0% | |
CAAAACCTTTGCCCTTGATC+TGG | - | chr3.1:85784832-85784851 | None:intergenic | 45.0% | |
CAACCACTCAGAACATCCAT+GGG | + | chr3.1:85788347-85788366 | MS.gene072956:CDS | 45.0% | |
CACCATTGCTGCAGTAACTT+TGG | + | chr3.1:85785919-85785938 | MS.gene072956:CDS | 45.0% | |
CATGTGACAGTTCAATGGTG+TGG | + | chr3.1:85789224-85789243 | MS.gene072956:intron | 45.0% | |
GACCCTCTTCGGAAAATGAA+GGG | + | chr3.1:85784856-85784875 | MS.gene072956:CDS | 45.0% | |
GAGACCCTAGTAAAGAGAGT+AGG | + | chr3.1:85785583-85785602 | MS.gene072956:intron | 45.0% | |
GATATTTCTCCAAGCATGCG+TGG | + | chr3.1:85786786-85786805 | MS.gene072956:CDS | 45.0% | |
GGCAAAACTGTCTCCAAAAC+CGG | + | chr3.1:85789245-85789264 | MS.gene072956:CDS | 45.0% | |
GTCAGCTGAAATTGCTAGAG+GGG | + | chr3.1:85785426-85785445 | MS.gene072956:intron | 45.0% | |
GTGTGGTGTCTGTCATAACA+TGG | - | chr3.1:85785988-85786007 | None:intergenic | 45.0% | |
TCAACCACTCAGAACATCCA+TGG | + | chr3.1:85788346-85788365 | MS.gene072956:CDS | 45.0% | |
TCTTCCAGTGCAAGAACAAC+TGG | - | chr3.1:85788506-85788525 | None:intergenic | 45.0% | |
TCTTGCTGAACTGGAATTCC+TGG | + | chr3.1:85788224-85788243 | MS.gene072956:CDS | 45.0% | |
TGCAAGTAACACCAAGCAAC+TGG | - | chr3.1:85787215-85787234 | None:intergenic | 45.0% | |
TTAGGTGGTAGAGACATGTG+TGG | + | chr3.1:85785555-85785574 | MS.gene072956:intron | 45.0% | |
! | ACCTTTGTTTGGACTTGGAG+AGG | - | chr3.1:85786050-85786069 | None:intergenic | 45.0% |
! | ATACCCATGGATGTTCTGAG+TGG | - | chr3.1:85788353-85788372 | None:intergenic | 45.0% |
! | ATGGATGTTCTGAGTGGTTG+AGG | - | chr3.1:85788347-85788366 | None:intergenic | 45.0% |
! | CAGATCAAGGGCAAAGGTTT+TGG | + | chr3.1:85784830-85784849 | MS.gene072956:CDS | 45.0% |
! | CTTTTACGGTGAGGAACATC+AGG | - | chr3.1:85784942-85784961 | None:intergenic | 45.0% |
! | TAAGCCCTGCCCTTCTTTTA+CGG | - | chr3.1:85784956-85784975 | None:intergenic | 45.0% |
! | TGGATGTTCTGAGTGGTTGA+GGG | - | chr3.1:85788346-85788365 | None:intergenic | 45.0% |
!! | GCAAGTATTCTAGGATAGCC+AGG | + | chr3.1:85786560-85786579 | MS.gene072956:intron | 45.0% |
!! | TCTGATTGATTGGCTTGTGG+AGG | + | chr3.1:85786812-85786831 | MS.gene072956:CDS | 45.0% |
!! | ATTATTATTACTTTATAATA+GGG | + | chr3.1:85786504-85786523 | MS.gene072956:intron | 5.0% |
!! | TATTATTATTACTTTATAAT+AGG | + | chr3.1:85786503-85786522 | MS.gene072956:intron | 5.0% |
AAACACAGGCTCCAGTTGCT+TGG | + | chr3.1:85787201-85787220 | MS.gene072956:CDS | 50.0% | |
ACAGGTTCCTCTTGCTGAAC+TGG | + | chr3.1:85788215-85788234 | MS.gene072956:intron | 50.0% | |
CAACAAAGTTCGAGTCACCG+AGG | + | chr3.1:85786393-85786412 | MS.gene072956:CDS | 50.0% | |
CTCACCGTAAAAGAAGGGCA+GGG | + | chr3.1:85784949-85784968 | MS.gene072956:CDS | 50.0% | |
CTGCTGTATTCCTTGCCAGA+TGG | + | chr3.1:85788319-85788338 | MS.gene072956:CDS | 50.0% | |
GAGTGGACGCTCTTCATCTT+TGG | - | chr3.1:85784802-85784821 | None:intergenic | 50.0% | |
GGACCCTCTTCGGAAAATGA+AGG | + | chr3.1:85784855-85784874 | MS.gene072956:CDS | 50.0% | |
TTGTGAGAAGGTAGGAGCCT+CGG | + | chr3.1:85786294-85786313 | MS.gene072956:CDS | 50.0% | |
!!! | AACAGTGACTGCACCGGTTT+TGG | - | chr3.1:85789261-85789280 | None:intergenic | 50.0% |
!!! | TCAAGGGCAAAGGTTTTGGG+AGG | + | chr3.1:85784834-85784853 | MS.gene072956:CDS | 50.0% |
AGAGATGTGTGCTCCTCGAG+TGG | + | chr3.1:85787612-85787631 | MS.gene072956:CDS | 55.0% | |
CCTCACCGTAAAAGAAGGGC+AGG | + | chr3.1:85784948-85784967 | MS.gene072956:CDS | 55.0% | |
GCTTGTGGAGGTCAGTCTTG+TGG | + | chr3.1:85786824-85786843 | MS.gene072956:intron | 55.0% | |
TACAAAGGTCAGGCGATCCG+AGG | - | chr3.1:85786314-85786333 | None:intergenic | 55.0% | |
TGAGTGGTTGAGGGTCCATC+TGG | - | chr3.1:85788337-85788356 | None:intergenic | 55.0% | |
! | CCTGCCCTTCTTTTACGGTG+AGG | - | chr3.1:85784951-85784970 | None:intergenic | 55.0% |
! | GGAGGTCAGTCTTGTGGCAT+TGG | + | chr3.1:85786830-85786849 | MS.gene072956:intron | 55.0% |
!!! | GGTTTTGGGAGGACCCTCTT+CGG | + | chr3.1:85784845-85784864 | MS.gene072956:CDS | 55.0% |
ACCGGTGCAGTCACTGTTCC+AGG | + | chr3.1:85789263-85789282 | MS.gene072956:CDS | 60.0% | |
ACTAAGTGGGGTCGGCTACC+AGG | - | chr3.1:85785201-85785220 | None:intergenic | 60.0% | |
GCAGAAGCAGCCACACGAGA+AGG | - | chr3.1:85788303-85788322 | None:intergenic | 60.0% | |
GCCTGGAACAGTGACTGCAC+CGG | - | chr3.1:85789267-85789286 | None:intergenic | 60.0% | |
GGTTGAGGGTCCATCTGGCA+AGG | - | chr3.1:85788332-85788351 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 85784771 | 85789296 | 85784771 | ID=MS.gene072956 |
chr3.1 | mRNA | 85784771 | 85789296 | 85784771 | ID=MS.gene072956.t1;Parent=MS.gene072956 |
chr3.1 | exon | 85784771 | 85785037 | 85784771 | ID=MS.gene072956.t1.exon1;Parent=MS.gene072956.t1 |
chr3.1 | CDS | 85784771 | 85785037 | 85784771 | ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1 |
chr3.1 | exon | 85785785 | 85786067 | 85785785 | ID=MS.gene072956.t1.exon2;Parent=MS.gene072956.t1 |
chr3.1 | CDS | 85785785 | 85786067 | 85785785 | ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1 |
chr3.1 | exon | 85786281 | 85786414 | 85786281 | ID=MS.gene072956.t1.exon3;Parent=MS.gene072956.t1 |
chr3.1 | CDS | 85786281 | 85786414 | 85786281 | ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1 |
chr3.1 | exon | 85786741 | 85786833 | 85786741 | ID=MS.gene072956.t1.exon4;Parent=MS.gene072956.t1 |
chr3.1 | CDS | 85786741 | 85786833 | 85786741 | ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1 |
chr3.1 | exon | 85787114 | 85787247 | 85787114 | ID=MS.gene072956.t1.exon5;Parent=MS.gene072956.t1 |
chr3.1 | CDS | 85787114 | 85787247 | 85787114 | ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1 |
chr3.1 | exon | 85787603 | 85787755 | 85787603 | ID=MS.gene072956.t1.exon6;Parent=MS.gene072956.t1 |
chr3.1 | CDS | 85787603 | 85787755 | 85787603 | ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1 |
chr3.1 | exon | 85787847 | 85787880 | 85787847 | ID=MS.gene072956.t1.exon7;Parent=MS.gene072956.t1 |
chr3.1 | CDS | 85787847 | 85787880 | 85787847 | ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1 |
chr3.1 | exon | 85788219 | 85788368 | 85788219 | ID=MS.gene072956.t1.exon8;Parent=MS.gene072956.t1 |
chr3.1 | CDS | 85788219 | 85788368 | 85788219 | ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1 |
chr3.1 | exon | 85788455 | 85788589 | 85788455 | ID=MS.gene072956.t1.exon9;Parent=MS.gene072956.t1 |
chr3.1 | CDS | 85788455 | 85788589 | 85788455 | ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1 |
chr3.1 | exon | 85789234 | 85789296 | 85789234 | ID=MS.gene072956.t1.exon10;Parent=MS.gene072956.t1 |
chr3.1 | CDS | 85789234 | 85789296 | 85789234 | ID=cds.MS.gene072956.t1;Parent=MS.gene072956.t1 |
Gene Sequence |
Protein sequence |