AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067144


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067144.t1 MTR_3g107970 95.426 481 19 1 1 481 1 478 0.0 947
MS.gene067144.t1 MTR_1g011470 58.099 463 138 7 17 477 14 422 0.0 518
MS.gene067144.t1 MTR_2g102520 48.354 486 218 13 11 477 8 479 1.01e-130 387
MS.gene067144.t1 MTR_2g102550 44.000 475 202 7 3 469 2 420 9.68e-124 368
MS.gene067144.t1 MTR_3g088415 54.643 280 125 2 201 478 225 504 1.08e-103 319
MS.gene067144.t1 MTR_3g088405 53.704 270 123 1 200 467 227 496 3.71e-103 318
MS.gene067144.t1 MTR_1g018680 51.095 274 132 1 205 476 80 353 3.15e-91 282
MS.gene067144.t1 MTR_3g088415 58.986 217 89 0 200 416 224 440 2.11e-90 283
MS.gene067144.t1 MTR_3g102530 48.029 279 143 1 196 472 64 342 9.03e-86 268
MS.gene067144.t1 MTR_3g102510 46.212 264 142 0 209 472 67 330 8.32e-81 254
MS.gene067144.t1 MTR_3g102520 46.324 272 144 1 203 472 78 349 2.80e-79 251
MS.gene067144.t1 MTR_3g102560 50.787 254 118 2 221 472 69 317 1.10e-73 235
MS.gene067144.t1 MTR_3g102540 50.781 256 116 5 220 472 13 261 2.74e-72 230
MS.gene067144.t1 MTR_3g088415 62.805 164 61 0 200 363 224 387 2.44e-71 232
MS.gene067144.t1 MTR_5g023790 40.959 271 152 4 201 470 156 419 1.54e-57 196
MS.gene067144.t1 MTR_5g088980 40.590 271 152 6 202 470 150 413 2.58e-57 196
MS.gene067144.t1 MTR_5g023790 43.966 232 122 4 201 431 156 380 4.14e-55 189
MS.gene067144.t1 MTR_8g074000 39.608 255 147 3 216 470 176 423 6.32e-55 190
MS.gene067144.t1 MTR_7g089080 40.511 274 154 7 201 470 183 451 2.44e-54 197
MS.gene067144.t1 MTR_5g023790 44.643 168 91 2 201 367 156 322 1.56e-39 146
MS.gene067144.t1 MTR_3g060770 30.556 252 160 7 185 431 2 243 1.56e-25 106
MS.gene067144.t1 MTR_3g061680 30.638 235 149 6 202 431 8 233 8.05e-25 104
MS.gene067144.t1 MTR_3g060410 34.375 192 117 5 245 431 131 318 1.00e-24 105
MS.gene067144.t1 MTR_3g060400 31.250 224 140 6 213 431 25 239 1.27e-24 103
MS.gene067144.t1 MTR_3g460990 31.250 224 140 6 213 431 25 239 1.27e-24 103
MS.gene067144.t1 MTR_3g060820 30.204 245 151 7 192 431 4 233 7.76e-24 101
MS.gene067144.t1 MTR_1g032850 35.359 181 103 5 234 411 362 531 1.43e-18 89.0
MS.gene067144.t1 MTR_5g044040 40.260 77 46 0 271 347 7 83 8.53e-17 77.0
MS.gene067144.t1 MTR_5g011900 29.730 148 101 2 242 388 95 240 3.02e-15 75.9
MS.gene067144.t1 MTR_3g100710 28.571 182 117 4 228 400 74 251 2.83e-14 74.7
MS.gene067144.t1 MTR_6g045270 27.972 286 171 13 208 481 38 300 2.53e-13 71.2
MS.gene067144.t1 MTR_4g080990 26.816 179 124 4 228 400 69 246 1.92e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067144.t1 AT5G25380 51.363 477 169 10 10 477 19 441 6.39e-147 427
MS.gene067144.t1 AT5G11300 51.489 470 166 10 13 477 22 434 6.70e-147 427
MS.gene067144.t1 AT5G25380 50.420 476 169 8 10 477 19 435 1.79e-145 424
MS.gene067144.t1 AT5G25380 50.420 476 169 8 10 477 19 435 1.79e-145 424
MS.gene067144.t1 AT5G25380 50.327 459 162 7 10 461 19 418 6.31e-141 411
MS.gene067144.t1 AT1G80370 47.072 444 195 6 31 469 42 450 6.78e-129 382
MS.gene067144.t1 AT1G15570 48.463 423 187 7 62 477 52 450 4.51e-126 374
MS.gene067144.t1 AT5G11300 49.392 411 147 9 13 419 22 375 8.64e-119 355
MS.gene067144.t1 AT1G44110 55.147 272 122 0 196 467 174 445 5.09e-110 334
MS.gene067144.t1 AT5G43080 52.399 271 129 0 202 472 73 343 6.86e-100 304
MS.gene067144.t1 AT5G43080 52.768 271 123 1 202 472 73 338 5.72e-99 301
MS.gene067144.t1 AT1G47210 49.324 296 146 2 179 472 67 360 3.32e-98 300
MS.gene067144.t1 AT1G77390 52.500 280 131 2 200 477 162 441 1.18e-96 299
MS.gene067144.t1 AT1G47220 52.416 269 126 1 202 468 42 310 1.45e-92 284
MS.gene067144.t1 AT1G47230 48.905 274 138 1 201 472 80 353 1.51e-90 280
MS.gene067144.t1 AT1G47230 48.727 275 138 2 201 472 80 354 1.06e-88 276
MS.gene067144.t1 AT5G06150 40.278 288 161 6 193 479 158 435 6.52e-59 201
MS.gene067144.t1 AT1G20610 39.114 271 157 4 201 470 161 424 1.24e-55 191
MS.gene067144.t1 AT1G76310 40.146 274 155 5 199 470 159 425 3.63e-55 190
MS.gene067144.t1 AT3G11520 40.959 271 151 5 201 470 143 405 1.73e-53 185
MS.gene067144.t1 AT1G76310 43.404 235 124 5 199 431 159 386 2.46e-52 182
MS.gene067144.t1 AT3G11520 44.351 239 124 5 201 438 143 373 2.69e-52 181
MS.gene067144.t1 AT2G26760 40.769 260 143 7 201 457 114 365 4.02e-52 181
MS.gene067144.t1 AT1G16330 39.216 255 148 3 216 470 395 642 1.04e-49 180
MS.gene067144.t1 AT1G76310 36.424 302 155 6 199 470 159 453 2.59e-49 175
MS.gene067144.t1 AT4G37490 37.050 278 160 8 200 470 148 417 5.99e-49 174
MS.gene067144.t1 AT2G17620 40.672 268 151 4 201 467 155 415 3.36e-48 172
MS.gene067144.t1 AT4G35620 39.700 267 153 4 201 466 156 415 1.63e-47 170
MS.gene067144.t1 AT4G35620 42.672 232 125 4 201 431 156 380 6.28e-46 164
MS.gene067144.t1 AT5G06150 42.045 176 99 3 193 367 158 331 4.67e-39 145
MS.gene067144.t1 AT1G76310 45.029 171 91 3 199 367 159 328 9.31e-39 144
MS.gene067144.t1 AT1G20590 43.312 157 83 2 275 431 63 213 3.91e-34 129
MS.gene067144.t1 AT1G47210 49.219 128 61 2 179 304 67 192 3.57e-32 122
MS.gene067144.t1 AT1G34460 34.091 176 93 4 193 367 234 387 5.45e-22 99.0
MS.gene067144.t1 AT1G34460 34.091 176 93 4 193 367 248 401 6.08e-22 99.0
MS.gene067144.t1 AT1G34460 34.091 176 93 4 193 367 248 401 6.08e-22 99.0
MS.gene067144.t1 AT1G34460 34.091 176 93 4 193 367 248 401 6.08e-22 99.0
MS.gene067144.t1 AT1G34460 34.091 176 93 4 193 367 248 401 6.08e-22 99.0
MS.gene067144.t1 AT1G34460 34.091 176 93 4 193 367 248 401 6.36e-22 99.0
MS.gene067144.t1 AT1G34460 34.091 176 93 4 193 367 245 398 6.55e-22 99.0
MS.gene067144.t1 AT1G34460 34.091 176 93 4 193 367 245 398 6.55e-22 99.0
MS.gene067144.t1 AT1G34460 34.091 176 93 4 193 367 248 401 8.30e-22 98.6
MS.gene067144.t1 AT1G14750 34.969 163 96 4 247 405 384 540 6.52e-16 80.9
MS.gene067144.t1 AT1G14750 34.969 163 96 4 247 405 384 540 8.47e-16 80.5
MS.gene067144.t1 AT1G14750 34.969 163 96 4 247 405 216 372 9.17e-16 79.7
MS.gene067144.t1 AT1G14750 34.969 163 95 5 247 405 216 371 1.51e-14 75.9
MS.gene067144.t1 AT5G65420 25.957 235 157 8 182 403 5 235 8.98e-11 63.5

Find 94 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTAAAGGATTCTCAAATT+TGG 0.182649 3.1:+85670929 MS.gene067144:CDS
CAGATCAAGGGCAAAGGTTT+TGG 0.191093 3.1:+85669412 MS.gene067144:CDS
TGGGATTTATACCTGAAAAT+TGG 0.195568 3.1:-85669609 None:intergenic
CGAACTTTGTTGTATATATC+AGG 0.212202 3.1:-85670964 None:intergenic
AACAGTGACTGCACCGGTTT+TGG 0.269524 3.1:-85673840 None:intergenic
CTGCAACTTCTCCATGTAAT+TGG 0.276568 3.1:-85671342 None:intergenic
TACATACCTGAGAAATGTTT+TGG 0.301501 3.1:-85672322 None:intergenic
GAGTGGACGCTCTTCATCTT+TGG 0.302032 3.1:-85669381 None:intergenic
TATTGAAATAAACCTTTGTT+TGG 0.308273 3.1:-85670640 None:intergenic
TCTTGCTGAACTGGAATTCC+TGG 0.315133 3.1:+85672806 MS.gene067144:CDS
ACCGGTGCAGTCACTGTTCC+AGG 0.328369 3.1:+85673845 MS.gene067144:CDS
ACAGGTTCCTCTTGCTGAAC+TGG 0.342894 3.1:+85672797 MS.gene067144:intron
TTCTCCATGTAATTGGTTGA+TGG 0.359361 3.1:-85671335 None:intergenic
CACCATTGCTGCAGTAACTT+TGG 0.388234 3.1:+85670501 MS.gene067144:CDS
TGCAAGTAACACCAAGCAAC+TGG 0.415916 3.1:-85671794 None:intergenic
CAAAACCTTTGCCCTTGATC+TGG 0.423251 3.1:-85669411 None:intergenic
AATAAACCTTTGTTTGGACT+TGG 0.425078 3.1:-85670634 None:intergenic
TCTTCCAGTGCAAGAACAAC+TGG 0.426769 3.1:-85673085 None:intergenic
ACAGTAAGGTAAAGAGTGTC+TGG 0.432601 3.1:-85671720 None:intergenic
AAGAGCAACAGCTTCCAAAA+AGG 0.433513 3.1:+85669463 MS.gene067144:CDS
TGAGTGGTTGAGGGTCCATC+TGG 0.438657 3.1:-85672916 None:intergenic
TGCGTGGAATTCTGATTGAT+TGG 0.439226 3.1:+85671384 MS.gene067144:CDS
ATATATGCAGACTACAACTC+TGG 0.439974 3.1:+85673027 MS.gene067144:intron
GGCAAAACTGTCTCCAAAAC+CGG 0.446811 3.1:+85673827 MS.gene067144:CDS
TAGCTCTGAAGCTTTGTAGT+TGG 0.450188 3.1:-85673059 None:intergenic
AACATGGTCACTTATGTTGT+TGG 0.450701 3.1:-85670551 None:intergenic
TATCGATGTCTACAAAGGTC+AGG 0.459319 3.1:-85670903 None:intergenic
ATGGATGTTCTGAGTGGTTG+AGG 0.460808 3.1:-85672926 None:intergenic
CATAAATTTACACTTGAGCC+TGG 0.467011 3.1:-85673863 None:intergenic
CTGCTGTATTCCTTGCCAGA+TGG 0.472091 3.1:+85672901 MS.gene067144:CDS
CCACAACCAAAACATTTCTC+AGG 0.475913 3.1:+85672316 MS.gene067144:CDS
ATCAGAATTCCACGCATGCT+TGG 0.476428 3.1:-85671377 None:intergenic
CACTCAGAATTACCAGATCA+AGG 0.485115 3.1:+85669399 MS.gene067144:CDS
TTGTGCTGATGAAACTTCAA+TGG 0.487200 3.1:-85670416 None:intergenic
GATCAATGAGGTTCACAGTA+AGG 0.489451 3.1:-85671734 None:intergenic
TGCTTCATGTGACAGTTCAA+TGG 0.489558 3.1:+85673801 MS.gene067144:intron
TGTAAGAAGATTGTGCTGCT+TGG 0.497059 3.1:-85672438 None:intergenic
ATGTTCCTCACCGTAAAAGA+AGG 0.498778 3.1:+85669525 MS.gene067144:CDS
AAAACCAGTTGTTCTTGCAC+TGG 0.503437 3.1:+85673081 MS.gene067144:CDS
CCTCACCGTAAAAGAAGGGC+AGG 0.504738 3.1:+85669530 MS.gene067144:CDS
GGTTTCTGAGGAATATAAGC+TGG 0.509301 3.1:+85671695 MS.gene067144:intron
GAACTTTGTTGTATATATCA+GGG 0.514973 3.1:-85670963 None:intergenic
AATTCTGATTGATTGGCTTG+TGG 0.519075 3.1:+85671391 MS.gene067144:CDS
CATAAATATGATTTGTGAGA+AGG 0.520200 3.1:+85670864 MS.gene067144:CDS
TGAAGTTTCATCAGCACAAG+AGG 0.526624 3.1:+85670420 MS.gene067144:CDS
AGCATGGAGAGAACAACCTT+TGG 0.528068 3.1:-85673122 None:intergenic
TTACTGTGAACCTCATTGAT+CGG 0.529430 3.1:+85671736 MS.gene067144:CDS
TATATTTCTCACGTATAGCA+TGG 0.531941 3.1:-85673138 None:intergenic
TGGATGTTCTGAGTGGTTGA+GGG 0.532302 3.1:-85672925 None:intergenic
TCAACCACTCAGAACATCCA+TGG 0.534173 3.1:+85672928 MS.gene067144:CDS
AAACACAGGCTCCAGTTGCT+TGG 0.536048 3.1:+85671783 MS.gene067144:CDS
AGAATTGTCTACCATAAAGA+TGG 0.537932 3.1:+85670465 MS.gene067144:CDS
GCAGAAGCAGCCACACGAGA+AGG 0.540170 3.1:-85672882 None:intergenic
TTGGACATACAATGTTCAGT+TGG 0.549012 3.1:-85670532 None:intergenic
GGACCCTCTTCGGAAAATGA+AGG 0.550131 3.1:+85669437 MS.gene067144:CDS
ACCTTTGTTTGGACTTGGAG+AGG 0.555698 3.1:-85670629 None:intergenic
AACCAAAGTTACTGCAGCAA+TGG 0.556672 3.1:-85670503 None:intergenic
AAGACCATCAACCAATTACA+TGG 0.561852 3.1:+85671331 MS.gene067144:CDS
TTGTGAGAAGGTAGGAGCCT+CGG 0.564379 3.1:+85670876 MS.gene067144:CDS
CAAGTTTGATTCAGAAACAC+AGG 0.567317 3.1:+85671769 MS.gene067144:CDS
ACAAGAGGATGTTAAAGAGA+AGG 0.567620 3.1:+85670435 MS.gene067144:CDS
AGCAGCACAATCTTCTTACA+AGG 0.568751 3.1:+85672441 MS.gene067144:CDS
GCTCTGCTAAATAATTTGCC+AGG 0.570353 3.1:-85672824 None:intergenic
AACTTTGTTGTATATATCAG+GGG 0.581055 3.1:-85670962 None:intergenic
TGTTTAACACGTTTATCATG+TGG 0.581458 3.1:-85669584 None:intergenic
TGAGAAATATAAACATGAGA+AGG 0.585853 3.1:+85673150 MS.gene067144:CDS
GCCTGGAACAGTGACTGCAC+CGG 0.595943 3.1:-85673846 None:intergenic
GACCCTCTTCGGAAAATGAA+GGG 0.596652 3.1:+85669438 MS.gene067144:CDS
GATCTGCAACTTAATACCAA+AGG 0.597942 3.1:+85673106 MS.gene067144:CDS
ACAGTTTCTACCTTCTCGTG+TGG 0.603003 3.1:+85672872 MS.gene067144:CDS
TCTGATTGATTGGCTTGTGG+AGG 0.610856 3.1:+85671394 MS.gene067144:CDS
TACAAAGGTCAGGCGATCCG+AGG 0.611523 3.1:-85670893 None:intergenic
TAATACATACACAAAAGAAG+AGG 0.613454 3.1:+85672239 MS.gene067144:CDS
GGTTGAGGGTCCATCTGGCA+AGG 0.616376 3.1:-85672911 None:intergenic
AATTACCAGATCAAGGGCAA+AGG 0.620424 3.1:+85669406 MS.gene067144:CDS
TTGAGAGAAACCGATCAATG+AGG 0.621952 3.1:-85671746 None:intergenic
AGGAATTCCAGTTCAGCAAG+AGG 0.623808 3.1:-85672804 None:intergenic
CAGATAACTGAAAACGCAGA+AGG 0.624641 3.1:-85672290 None:intergenic
ACTCAGAATTACCAGATCAA+GGG 0.628344 3.1:+85669400 MS.gene067144:CDS
ATGCAAGAATGTGTGAACTC+TGG 0.628364 3.1:+85670595 MS.gene067144:CDS
AAGCAAAATTCTTCCACTCG+AGG 0.634099 3.1:-85672207 None:intergenic
CAACCACTCAGAACATCCAT+GGG 0.636239 3.1:+85672929 MS.gene067144:CDS
ACATTCTTGCATTGAAAGTG+TGG 0.640397 3.1:-85670584 None:intergenic
TGTTCCTCACCGTAAAAGAA+GGG 0.641902 3.1:+85669526 MS.gene067144:CDS
AATATGATTTGTGAGAAGGT+AGG 0.642690 3.1:+85670868 MS.gene067144:CDS
GATATTTCTCCAAGCATGCG+TGG 0.654313 3.1:+85671368 MS.gene067144:CDS
CTTGATCTGGTAATTCTGAG+TGG 0.660376 3.1:-85669398 None:intergenic
ACCTCTCCAAGTCCAAACAA+AGG 0.667488 3.1:+85670628 MS.gene067144:CDS
ATACCCATGGATGTTCTGAG+TGG 0.668616 3.1:-85672932 None:intergenic
AGAGATGTGTGCTCCTCGAG+TGG 0.670751 3.1:+85672194 MS.gene067144:CDS
CATGTGACAGTTCAATGGTG+TGG 0.678244 3.1:+85673806 MS.gene067144:intron
GTGTGGTGTCTGTCATAACA+TGG 0.706964 3.1:-85670567 None:intergenic
CTCACCGTAAAAGAAGGGCA+GGG 0.713304 3.1:+85669531 MS.gene067144:CDS
CAACAAAGTTCGAGTCACCG+AGG 0.719869 3.1:+85670975 MS.gene067144:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATAAAAAAAGTTACT+AGG + chr3.1:85670751-85670770 MS.gene067144:intron 10.0%
!!! TAATGAAAATTTTATGTTTT+GGG - chr3.1:85670041-85670060 None:intergenic 10.0%
!!! TATAATTTAAAACATGAATT+TGG - chr3.1:85669644-85669663 None:intergenic 10.0%
!! GATTGTTTAATAATGAATTA+CGG - chr3.1:85671006-85671025 None:intergenic 15.0%
!! TATTTATATCTTCTAAACAA+AGG - chr3.1:85672982-85673001 None:intergenic 15.0%
!!! AATTGGTACATTTTATTTTA+TGG - chr3.1:85669935-85669954 None:intergenic 15.0%
!!! ACTTTTTTTATATTATCCAA+AGG - chr3.1:85670747-85670766 None:intergenic 15.0%
!!! CTTTTTTTATATTATCCAAA+GGG - chr3.1:85670746-85670765 None:intergenic 15.0%
!!! GTAATGAAAATTTTATGTTT+TGG - chr3.1:85670042-85670061 None:intergenic 15.0%
!! ATCAATATCACCATATAATT+AGG + chr3.1:85669663-85669682 MS.gene067144:intron 20.0%
!! TATGATAGAATAGAACATTA+TGG + chr3.1:85669746-85669765 MS.gene067144:intron 20.0%
!! TATTGAAATAAACCTTTGTT+TGG - chr3.1:85670643-85670662 None:intergenic 20.0%
!! TCTATTCTTAGTACAAAAAT+AGG - chr3.1:85671243-85671262 None:intergenic 20.0%
!!! AAAACATTGATGATAAGTTT+TGG + chr3.1:85671286-85671305 MS.gene067144:intron 20.0%
!!! AAATCTTTCTGATAGTTTTT+AGG - chr3.1:85669696-85669715 None:intergenic 20.0%
!!! AAGATTTGAAATTAATGAGT+TGG + chr3.1:85669709-85669728 MS.gene067144:intron 20.0%
!!! AATTTAACTTAGTATGTGTT+TGG + chr3.1:85672490-85672509 MS.gene067144:intron 20.0%
!!! ACTAGTATAAAACATGTTTT+AGG + chr3.1:85670680-85670699 MS.gene067144:intron 20.0%
!!! CATAGCTTTATTGAAAAAAA+AGG + chr3.1:85673749-85673768 MS.gene067144:intron 20.0%
!!! CTTTTTTTTCAATAAAGCTA+TGG - chr3.1:85673751-85673770 None:intergenic 20.0%
!!! GTAAGTACTATTTTTTGTAA+TGG + chr3.1:85671830-85671849 MS.gene067144:intron 20.0%
!!! TAAACTTTATCTTGTTATAC+AGG + chr3.1:85672779-85672798 MS.gene067144:intron 20.0%
! AAAAGAAGAGGTAGTAAAAA+TGG + chr3.1:85672251-85672270 MS.gene067144:CDS 25.0%
! AAATTGTAGAATCTCATCTT+AGG + chr3.1:85670119-85670138 MS.gene067144:intron 25.0%
! ACTATCATTTCCTAATGATA+TGG - chr3.1:85669832-85669851 None:intergenic 25.0%
! ACTTCAACAAACTGTAATTA+AGG - chr3.1:85671623-85671642 None:intergenic 25.0%
! AGAATTCTTTGATAAGGTTA+TGG - chr3.1:85671487-85671506 None:intergenic 25.0%
! AGACATCGATAAAAAGTTAA+AGG + chr3.1:85670915-85670934 MS.gene067144:CDS 25.0%
! AGTTAAAGGATTCTCAAATT+TGG + chr3.1:85670929-85670948 MS.gene067144:CDS 25.0%
! ATAGGATATATACAATGTGA+TGG + chr3.1:85671543-85671562 MS.gene067144:intron 25.0%
! CAAAAACATAGTTGAATGAT+AGG + chr3.1:85671525-85671544 MS.gene067144:intron 25.0%
! CTAAGTTAAATTGTAGATAG+TGG - chr3.1:85672482-85672501 None:intergenic 25.0%
! CTGTAAAATGGATAACTAAT+CGG - chr3.1:85670347-85670366 None:intergenic 25.0%
! GTACAAAAATAGGATTACTT+TGG - chr3.1:85671233-85671252 None:intergenic 25.0%
! TAAAATGTACCAATTGAACT+TGG + chr3.1:85669940-85669959 MS.gene067144:intron 25.0%
! TAATACATACACAAAAGAAG+AGG + chr3.1:85672239-85672258 MS.gene067144:CDS 25.0%
! TAGATGAGAATTCTTTGATA+AGG - chr3.1:85671493-85671512 None:intergenic 25.0%
! TCCAAATAGTGCTTATAAAT+AGG + chr3.1:85673453-85673472 MS.gene067144:intron 25.0%
! TCCTATTTATAAGCACTATT+TGG - chr3.1:85673457-85673476 None:intergenic 25.0%
! TGAGAAATATAAACATGAGA+AGG + chr3.1:85673150-85673169 MS.gene067144:CDS 25.0%
! TGTCAAAGATGCTTATAAAA+AGG - chr3.1:85673260-85673279 None:intergenic 25.0%
! TTGATCTATTATTGTCTTTC+AGG + chr3.1:85672407-85672426 MS.gene067144:intron 25.0%
!! AACTTTGTTGTATATATCAG+GGG - chr3.1:85670965-85670984 None:intergenic 25.0%
!! ATGAATTTGGTGACAAAATT+GGG - chr3.1:85669631-85669650 None:intergenic 25.0%
!! CATAAATATGATTTGTGAGA+AGG + chr3.1:85670864-85670883 MS.gene067144:CDS 25.0%
!! GAACTTTGTTGTATATATCA+GGG - chr3.1:85670966-85670985 None:intergenic 25.0%
!! TAAAGAGAAAAGTAGCATTT+TGG - chr3.1:85672017-85672036 None:intergenic 25.0%
!! TAATGAGTTGGACTAAAATA+TGG + chr3.1:85669721-85669740 MS.gene067144:intron 25.0%
!! TCTTTTTGAACTATGAACTA+AGG + chr3.1:85671908-85671927 MS.gene067144:intron 25.0%
!! TGTTAAACAATCCAATTTTC+AGG + chr3.1:85669598-85669617 MS.gene067144:CDS 25.0%
!! TTTTCAATAAAGCTATGGAT+AGG - chr3.1:85673746-85673765 None:intergenic 25.0%
!!! CAACTATGTTTTTGATTGAA+AGG - chr3.1:85671519-85671538 None:intergenic 25.0%
!!! TGTTTTTTCCCAATATCATT+CGG + chr3.1:85672128-85672147 MS.gene067144:intron 25.0%
!!! TTAGCTTTGTGTTTTTCTTT+TGG - chr3.1:85670384-85670403 None:intergenic 25.0%
AACATTGGTCAACTGAAAAA+AGG - chr3.1:85673196-85673215 None:intergenic 30.0%
AAGAATAGAGCAGAATCATT+AGG + chr3.1:85671254-85671273 MS.gene067144:intron 30.0%
AAGATTGTCCAATAGTTAAG+AGG + chr3.1:85670196-85670215 MS.gene067144:intron 30.0%
AATAGATTTGCCTTCAAAGT+TGG + chr3.1:85669977-85669996 MS.gene067144:intron 30.0%
ACTATGAACTAAGGATATCT+AGG + chr3.1:85671917-85671936 MS.gene067144:intron 30.0%
AGAATTGTCTACCATAAAGA+TGG + chr3.1:85670465-85670484 MS.gene067144:CDS 30.0%
AGACAACATGACAGTAATTA+TGG - chr3.1:85670827-85670846 None:intergenic 30.0%
AGGTCTTCTTCCTAATTATA+TGG - chr3.1:85669676-85669695 None:intergenic 30.0%
ATAGATTTGCCTTCAAAGTT+GGG + chr3.1:85669978-85669997 MS.gene067144:intron 30.0%
ATCTTAGACCGAATGATATT+GGG - chr3.1:85672139-85672158 None:intergenic 30.0%
CAAAAGATGTTTCCTCTAAA+GGG - chr3.1:85673682-85673701 None:intergenic 30.0%
CACTCAATAATTGAGAATGT+TGG - chr3.1:85673528-85673547 None:intergenic 30.0%
GATTGATCTATCTAGGTAAT+TGG + chr3.1:85669882-85669901 MS.gene067144:intron 30.0%
GGTGAAATATCTTAGAAGTT+TGG + chr3.1:85670798-85670817 MS.gene067144:intron 30.0%
GGTTATAGTTGCATTTGAAA+TGG + chr3.1:85671592-85671611 MS.gene067144:intron 30.0%
GTTGTTATCACCATATCATT+AGG + chr3.1:85669819-85669838 MS.gene067144:intron 30.0%
TAACTATCACCAAATGCATT+CGG - chr3.1:85672075-85672094 None:intergenic 30.0%
TACAACTCTTTATGATGATC+AGG + chr3.1:85671571-85671590 MS.gene067144:intron 30.0%
TAGGAACAGAGATAGTATAT+AGG + chr3.1:85673472-85673491 MS.gene067144:intron 30.0%
TATATTTCTCACGTATAGCA+TGG - chr3.1:85673141-85673160 None:intergenic 30.0%
TCAATGTAAGCAAGTATTCT+AGG + chr3.1:85671133-85671152 MS.gene067144:intron 30.0%
TCATTTAATCCGAATGCATT+TGG + chr3.1:85672063-85672082 MS.gene067144:intron 30.0%
TGAAAGATGACTTACATTCA+GGG + chr3.1:85673417-85673436 MS.gene067144:intron 30.0%
TGACATTGCAATTTAGCATA+TGG - chr3.1:85670715-85670734 None:intergenic 30.0%
TGATAAGGTTATGGACAAAA+AGG - chr3.1:85671478-85671497 None:intergenic 30.0%
TGGGATTTATACCTGAAAAT+TGG - chr3.1:85669612-85669631 None:intergenic 30.0%
TGTTTAACACGTTTATCATG+TGG - chr3.1:85669587-85669606 None:intergenic 30.0%
TTGAAAGATGACTTACATTC+AGG + chr3.1:85673416-85673435 MS.gene067144:intron 30.0%
! AATAAACCTTTGTTTGGACT+TGG - chr3.1:85670637-85670656 None:intergenic 30.0%
! AATATGATTTGTGAGAAGGT+AGG + chr3.1:85670868-85670887 MS.gene067144:CDS 30.0%
! CATGAATTTGGTGACAAAAT+TGG - chr3.1:85669632-85669651 None:intergenic 30.0%
! CGAACTTTGTTGTATATATC+AGG - chr3.1:85670967-85670986 None:intergenic 30.0%
! CTTTTTATCGATGTCTACAA+AGG - chr3.1:85670911-85670930 None:intergenic 30.0%
! TACATACCTGAGAAATGTTT+TGG - chr3.1:85672325-85672344 None:intergenic 30.0%
! TTTCTTTTGGTAAACTCCTT+TGG - chr3.1:85670371-85670390 None:intergenic 30.0%
!! AAGCTATAAATCCTAGCTTT+TGG - chr3.1:85672631-85672650 None:intergenic 30.0%
!! ATGGATTTTGACATGTTTGA+TGG + chr3.1:85672553-85672572 MS.gene067144:intron 30.0%
!! CGATTAGTTATCCATTTTAC+AGG + chr3.1:85670345-85670364 MS.gene067144:intron 30.0%
!! CTATGTTTTTGATTGAAAGG+CGG - chr3.1:85671516-85671535 None:intergenic 30.0%
!! GACTAGTGGATTTAAAACAT+TGG - chr3.1:85673211-85673230 None:intergenic 30.0%
!! TTTTGACTCTACCATCTTTA+TGG - chr3.1:85670479-85670498 None:intergenic 30.0%
!!! AAGCTTTTTTCAACTAAGTG+GGG - chr3.1:85669795-85669814 None:intergenic 30.0%
!!! ACTATTTTTTGTAATGGTCC+TGG + chr3.1:85671836-85671855 MS.gene067144:intron 30.0%
!!! CAAGCTTTTTTCAACTAAGT+GGG - chr3.1:85669796-85669815 None:intergenic 30.0%
AACATGGTCACTTATGTTGT+TGG - chr3.1:85670554-85670573 None:intergenic 35.0%
AAGACCATCAACCAATTACA+TGG + chr3.1:85671331-85671350 MS.gene067144:CDS 35.0%
AATGAATTACGGACAAACCT+CGG - chr3.1:85670995-85671014 None:intergenic 35.0%
AATGTCATAAGATTGCCCTT+TGG + chr3.1:85670728-85670747 MS.gene067144:intron 35.0%
ACAAGAGGATGTTAAAGAGA+AGG + chr3.1:85670435-85670454 MS.gene067144:CDS 35.0%
ACATGCAGATTGATCTATCT+AGG + chr3.1:85669875-85669894 MS.gene067144:intron 35.0%
ACATTCTTGCATTGAAAGTG+TGG - chr3.1:85670587-85670606 None:intergenic 35.0%
ACTCAGAATTACCAGATCAA+GGG + chr3.1:85669400-85669419 MS.gene067144:CDS 35.0%
ACTTACATACCCAACTTTGA+AGG - chr3.1:85669990-85670009 None:intergenic 35.0%
AGAATTCTAACTCTGAGCAA+CGG - chr3.1:85671875-85671894 None:intergenic 35.0%
AGAGGTAGTAAAAATGGAGA+AGG + chr3.1:85672257-85672276 MS.gene067144:CDS 35.0%
AGTGATTCTAACCAAAAGCT+AGG + chr3.1:85672617-85672636 MS.gene067144:intron 35.0%
AGTTGTATTGTACCCTTTAG+AGG + chr3.1:85673667-85673686 MS.gene067144:intron 35.0%
ATATATGCAGACTACAACTC+TGG + chr3.1:85673027-85673046 MS.gene067144:intron 35.0%
ATTATGGCGTAATTTGATCC+TGG + chr3.1:85669762-85669781 MS.gene067144:intron 35.0%
CAAGTTTGATTCAGAAACAC+AGG + chr3.1:85671769-85671788 MS.gene067144:CDS 35.0%
CATCTTAGACCGAATGATAT+TGG - chr3.1:85672140-85672159 None:intergenic 35.0%
CCACTTAGTTGAAAAAAGCT+TGG + chr3.1:85669794-85669813 MS.gene067144:intron 35.0%
CTAACCTACTCTCTTTACTA+GGG - chr3.1:85670172-85670191 None:intergenic 35.0%
GATCTGCAACTTAATACCAA+AGG + chr3.1:85673106-85673125 MS.gene067144:CDS 35.0%
GCAAAAGATGTTTCCTCTAA+AGG - chr3.1:85673683-85673702 None:intergenic 35.0%
TAGTCAACATTTCATACCCA+TGG - chr3.1:85672948-85672967 None:intergenic 35.0%
TATTCCTCAGAAACCTGAAA+AGG - chr3.1:85671690-85671709 None:intergenic 35.0%
TCAGAAACCTGAAAAGGAAT+AGG - chr3.1:85671684-85671703 None:intergenic 35.0%
TCTAACCTACTCTCTTTACT+AGG - chr3.1:85670173-85670192 None:intergenic 35.0%
TCTCTTCACCTCTTAACTAT+TGG - chr3.1:85670207-85670226 None:intergenic 35.0%
TCTGATTGAGGTTCATAAAC+CGG + chr3.1:85673704-85673723 MS.gene067144:intron 35.0%
TGCAAAATGAAATATGCTCC+TGG - chr3.1:85671163-85671182 None:intergenic 35.0%
TTACTGTGAACCTCATTGAT+CGG + chr3.1:85671736-85671755 MS.gene067144:CDS 35.0%
TTCTCCATGTAATTGGTTGA+TGG - chr3.1:85671338-85671357 None:intergenic 35.0%
TTGGACATACAATGTTCAGT+TGG - chr3.1:85670535-85670554 None:intergenic 35.0%
TTGGTTAGAATCACTTCTTG+AGG - chr3.1:85672612-85672631 None:intergenic 35.0%
TTGTAGAATCTCATCTTAGG+TGG + chr3.1:85670122-85670141 MS.gene067144:intron 35.0%
! ACATCTTTTGCATCTGATTG+AGG + chr3.1:85673692-85673711 MS.gene067144:intron 35.0%
! AGATGCACTTCTTTTCTTCA+TGG + chr3.1:85672155-85672174 MS.gene067144:intron 35.0%
! CTCAGAAGAAACAACCTTTT+TGG - chr3.1:85669480-85669499 None:intergenic 35.0%
! TCTAAAGGGTACAATACAAC+TGG - chr3.1:85673668-85673687 None:intergenic 35.0%
! TTACCATCAAGCTTTTGTTG+TGG + chr3.1:85671643-85671662 MS.gene067144:intron 35.0%
! TTAGTATGTGTTTGGTTTCG+TGG + chr3.1:85672498-85672517 MS.gene067144:intron 35.0%
! TTATCCATTTTACAGGCCAA+AGG + chr3.1:85670352-85670371 MS.gene067144:intron 35.0%
! TTGTGCTGATGAAACTTCAA+TGG - chr3.1:85670419-85670438 None:intergenic 35.0%
!! AAGTGGTTCTAGACACAAAA+TGG + chr3.1:85672534-85672553 MS.gene067144:intron 35.0%
!! AATTCTGATTGATTGGCTTG+TGG + chr3.1:85671391-85671410 MS.gene067144:CDS 35.0%
!! AGGACAGCATATTATTTTGC+CGG - chr3.1:85673726-85673745 None:intergenic 35.0%
!! CTGGATTATTTTATGCTGAC+AGG + chr3.1:85672736-85672755 MS.gene067144:intron 35.0%
!! TTTGTGTCTAGAACCACTTT+TGG - chr3.1:85672533-85672552 None:intergenic 35.0%
!! TTTTGTTGTGGCTTTGCTAA+AGG + chr3.1:85671655-85671674 MS.gene067144:intron 35.0%
!!! CCAAGCTTTTTTCAACTAAG+TGG - chr3.1:85669797-85669816 None:intergenic 35.0%
!!! CTGAGAAATGTTTTGGTTGT+GGG - chr3.1:85672318-85672337 None:intergenic 35.0%
!!! TATTCCTTTTCAGGTTTCTG+AGG + chr3.1:85671683-85671702 MS.gene067144:intron 35.0%
!!! TTTTTTCAACTAAGTGGGGT+CGG - chr3.1:85669791-85669810 None:intergenic 35.0%
AAAACCAGTTGTTCTTGCAC+TGG + chr3.1:85673081-85673100 MS.gene067144:CDS 40.0%
AACCAAAGTTACTGCAGCAA+TGG - chr3.1:85670506-85670525 None:intergenic 40.0%
AACGGGAACTTATGTTAACC+AGG - chr3.1:85671857-85671876 None:intergenic 40.0%
AACTCCTTTGGCCTGTAAAA+TGG - chr3.1:85670359-85670378 None:intergenic 40.0%
AAGAGCAACAGCTTCCAAAA+AGG + chr3.1:85669463-85669482 MS.gene067144:CDS 40.0%
AAGCAAAATTCTTCCACTCG+AGG - chr3.1:85672210-85672229 None:intergenic 40.0%
AAGCCACAACAAAAGCTTGA+TGG - chr3.1:85671649-85671668 None:intergenic 40.0%
AAGCCACTAACTCACTAGAA+AGG + chr3.1:85670777-85670796 MS.gene067144:intron 40.0%
AAGTCAGCTGAAATTGCTAG+AGG + chr3.1:85670006-85670025 MS.gene067144:intron 40.0%
AATTACCAGATCAAGGGCAA+AGG + chr3.1:85669406-85669425 MS.gene067144:CDS 40.0%
ACAGTAAACTGAGGATCGAA+AGG - chr3.1:85671976-85671995 None:intergenic 40.0%
AGCAGCACAATCTTCTTACA+AGG + chr3.1:85672441-85672460 MS.gene067144:CDS 40.0%
AGTCAGCTGAAATTGCTAGA+GGG + chr3.1:85670007-85670026 MS.gene067144:intron 40.0%
ATCATCTCCACAGTAAACTG+AGG - chr3.1:85671985-85672004 None:intergenic 40.0%
ATGCAAGAATGTGTGAACTC+TGG + chr3.1:85670595-85670614 MS.gene067144:CDS 40.0%
ATGTTCCTCACCGTAAAAGA+AGG + chr3.1:85669525-85669544 MS.gene067144:CDS 40.0%
CACTCAGAATTACCAGATCA+AGG + chr3.1:85669399-85669418 MS.gene067144:CDS 40.0%
CACTGAAAATGCTACTCCAT+CGG + chr3.1:85673232-85673251 MS.gene067144:intron 40.0%
CAGATAACTGAAAACGCAGA+AGG - chr3.1:85672293-85672312 None:intergenic 40.0%
CATTGCAAAATCAAACACGC+TGG + chr3.1:85672717-85672736 MS.gene067144:intron 40.0%
CCACAACCAAAACATTTCTC+AGG + chr3.1:85672316-85672335 MS.gene067144:CDS 40.0%
CTGCAACTTCTCCATGTAAT+TGG - chr3.1:85671345-85671364 None:intergenic 40.0%
CTTGATCTGGTAATTCTGAG+TGG - chr3.1:85669401-85669420 None:intergenic 40.0%
GAATTCTAACTCTGAGCAAC+GGG - chr3.1:85671874-85671893 None:intergenic 40.0%
GATCAATGAGGTTCACAGTA+AGG - chr3.1:85671737-85671756 None:intergenic 40.0%
GTGGTAGAGATAACCAAAAG+TGG + chr3.1:85672517-85672536 MS.gene067144:intron 40.0%
TATCGATGTCTACAAAGGTC+AGG - chr3.1:85670906-85670925 None:intergenic 40.0%
TGAAGTTTCATCAGCACAAG+AGG + chr3.1:85670420-85670439 MS.gene067144:CDS 40.0%
TGCGTGGAATTCTGATTGAT+TGG + chr3.1:85671384-85671403 MS.gene067144:CDS 40.0%
TGCTTCATGTGACAGTTCAA+TGG + chr3.1:85673801-85673820 MS.gene067144:intron 40.0%
TGTTCCTCACCGTAAAAGAA+GGG + chr3.1:85669526-85669545 MS.gene067144:CDS 40.0%
TTGAGAGAAACCGATCAATG+AGG - chr3.1:85671749-85671768 None:intergenic 40.0%
TTTCGATCCTCAGTTTACTG+TGG + chr3.1:85671975-85671994 MS.gene067144:intron 40.0%
TTTGCTCGACCAAGTTCAAT+TGG - chr3.1:85669952-85669971 None:intergenic 40.0%
! AGATCAAGGGCAAAGGTTTT+GGG + chr3.1:85669413-85669432 MS.gene067144:CDS 40.0%
! AGCATTTTCAGTGTGACTAG+TGG - chr3.1:85673225-85673244 None:intergenic 40.0%
! GCTCTGCTAAATAATTTGCC+AGG - chr3.1:85672827-85672846 None:intergenic 40.0%
! GGTTTCTGAGGAATATAAGC+TGG + chr3.1:85671695-85671714 MS.gene067144:intron 40.0%
! TCACCTTTCTAGTGAGTTAG+TGG - chr3.1:85670783-85670802 None:intergenic 40.0%
! TGTAAGAAGATTGTGCTGCT+TGG - chr3.1:85672441-85672460 None:intergenic 40.0%
! TTCCCTTCATTTTCCGAAGA+GGG - chr3.1:85669443-85669462 None:intergenic 40.0%
! TTTCCCTTCATTTTCCGAAG+AGG - chr3.1:85669444-85669463 None:intergenic 40.0%
!! AAGGTGTCCTATTCCTTTTC+AGG + chr3.1:85671674-85671693 MS.gene067144:intron 40.0%
!! ACAGTAAGGTAAAGAGTGTC+TGG - chr3.1:85671723-85671742 None:intergenic 40.0%
!! TAGCTCTGAAGCTTTGTAGT+TGG - chr3.1:85673062-85673081 None:intergenic 40.0%
!! TGCTTATAAAAAGGCACCGA+TGG - chr3.1:85673251-85673270 None:intergenic 40.0%
!! TGGAGAAGTACTTGTACACA+CGG - chr3.1:85673648-85673667 None:intergenic 40.0%
!!! CCTGAGAAATGTTTTGGTTG+TGG - chr3.1:85672319-85672338 None:intergenic 40.0%
ACAGTTTCTACCTTCTCGTG+TGG + chr3.1:85672872-85672891 MS.gene067144:CDS 45.0%
ACCTCTCCAAGTCCAAACAA+AGG + chr3.1:85670628-85670647 MS.gene067144:CDS 45.0%
AGCATGGAGAGAACAACCTT+TGG - chr3.1:85673125-85673144 None:intergenic 45.0%
AGGAATTCCAGTTCAGCAAG+AGG - chr3.1:85672807-85672826 None:intergenic 45.0%
ATCAGAATTCCACGCATGCT+TGG - chr3.1:85671380-85671399 None:intergenic 45.0%
CAAAACCTTTGCCCTTGATC+TGG - chr3.1:85669414-85669433 None:intergenic 45.0%
CAACCACTCAGAACATCCAT+GGG + chr3.1:85672929-85672948 MS.gene067144:CDS 45.0%
CACCATTGCTGCAGTAACTT+TGG + chr3.1:85670501-85670520 MS.gene067144:CDS 45.0%
CATGTGACAGTTCAATGGTG+TGG + chr3.1:85673806-85673825 MS.gene067144:intron 45.0%
GACCCTCTTCGGAAAATGAA+GGG + chr3.1:85669438-85669457 MS.gene067144:CDS 45.0%
GAGACCCTAGTAAAGAGAGT+AGG + chr3.1:85670165-85670184 MS.gene067144:intron 45.0%
GATATTTCTCCAAGCATGCG+TGG + chr3.1:85671368-85671387 MS.gene067144:CDS 45.0%
GGCAAAACTGTCTCCAAAAC+CGG + chr3.1:85673827-85673846 MS.gene067144:CDS 45.0%
GTCAGCTGAAATTGCTAGAG+GGG + chr3.1:85670008-85670027 MS.gene067144:intron 45.0%
GTGTGGTGTCTGTCATAACA+TGG - chr3.1:85670570-85670589 None:intergenic 45.0%
TCAACCACTCAGAACATCCA+TGG + chr3.1:85672928-85672947 MS.gene067144:CDS 45.0%
TCTTCCAGTGCAAGAACAAC+TGG - chr3.1:85673088-85673107 None:intergenic 45.0%
TCTTGCTGAACTGGAATTCC+TGG + chr3.1:85672806-85672825 MS.gene067144:CDS 45.0%
TGCAAGTAACACCAAGCAAC+TGG - chr3.1:85671797-85671816 None:intergenic 45.0%
TTAGGTGGTAGAGACATGTG+TGG + chr3.1:85670137-85670156 MS.gene067144:intron 45.0%
! ACCTTTGTTTGGACTTGGAG+AGG - chr3.1:85670632-85670651 None:intergenic 45.0%
! ATACCCATGGATGTTCTGAG+TGG - chr3.1:85672935-85672954 None:intergenic 45.0%
! ATGGATGTTCTGAGTGGTTG+AGG - chr3.1:85672929-85672948 None:intergenic 45.0%
! CAGATCAAGGGCAAAGGTTT+TGG + chr3.1:85669412-85669431 MS.gene067144:CDS 45.0%
! CTTTTACGGTGAGGAACATC+AGG - chr3.1:85669524-85669543 None:intergenic 45.0%
! TAAGCCCTGCCCTTCTTTTA+CGG - chr3.1:85669538-85669557 None:intergenic 45.0%
! TGGATGTTCTGAGTGGTTGA+GGG - chr3.1:85672928-85672947 None:intergenic 45.0%
!! GCAAGTATTCTAGGATAGCC+AGG + chr3.1:85671142-85671161 MS.gene067144:intron 45.0%
!! TCTGATTGATTGGCTTGTGG+AGG + chr3.1:85671394-85671413 MS.gene067144:CDS 45.0%
!! ATTATTATTACTTTATAATA+GGG + chr3.1:85671086-85671105 MS.gene067144:intron 5.0%
!! TATTATTATTACTTTATAAT+AGG + chr3.1:85671085-85671104 MS.gene067144:intron 5.0%
AAACACAGGCTCCAGTTGCT+TGG + chr3.1:85671783-85671802 MS.gene067144:CDS 50.0%
ACAGGTTCCTCTTGCTGAAC+TGG + chr3.1:85672797-85672816 MS.gene067144:intron 50.0%
CAACAAAGTTCGAGTCACCG+AGG + chr3.1:85670975-85670994 MS.gene067144:CDS 50.0%
CTCACCGTAAAAGAAGGGCA+GGG + chr3.1:85669531-85669550 MS.gene067144:CDS 50.0%
CTGCTGTATTCCTTGCCAGA+TGG + chr3.1:85672901-85672920 MS.gene067144:CDS 50.0%
GAGTGGACGCTCTTCATCTT+TGG - chr3.1:85669384-85669403 None:intergenic 50.0%
GGACCCTCTTCGGAAAATGA+AGG + chr3.1:85669437-85669456 MS.gene067144:CDS 50.0%
TTGTGAGAAGGTAGGAGCCT+CGG + chr3.1:85670876-85670895 MS.gene067144:CDS 50.0%
!!! AACAGTGACTGCACCGGTTT+TGG - chr3.1:85673843-85673862 None:intergenic 50.0%
!!! TCAAGGGCAAAGGTTTTGGG+AGG + chr3.1:85669416-85669435 MS.gene067144:CDS 50.0%
AGAGATGTGTGCTCCTCGAG+TGG + chr3.1:85672194-85672213 MS.gene067144:CDS 55.0%
CCTCACCGTAAAAGAAGGGC+AGG + chr3.1:85669530-85669549 MS.gene067144:CDS 55.0%
GCTTGTGGAGGTCAGTCTTG+TGG + chr3.1:85671406-85671425 MS.gene067144:intron 55.0%
TACAAAGGTCAGGCGATCCG+AGG - chr3.1:85670896-85670915 None:intergenic 55.0%
TGAGTGGTTGAGGGTCCATC+TGG - chr3.1:85672919-85672938 None:intergenic 55.0%
! CCTGCCCTTCTTTTACGGTG+AGG - chr3.1:85669533-85669552 None:intergenic 55.0%
! GGAGGTCAGTCTTGTGGCAT+TGG + chr3.1:85671412-85671431 MS.gene067144:intron 55.0%
!!! GGTTTTGGGAGGACCCTCTT+CGG + chr3.1:85669427-85669446 MS.gene067144:CDS 55.0%
ACCGGTGCAGTCACTGTTCC+AGG + chr3.1:85673845-85673864 MS.gene067144:CDS 60.0%
ACTAAGTGGGGTCGGCTACC+AGG - chr3.1:85669783-85669802 None:intergenic 60.0%
GCAGAAGCAGCCACACGAGA+AGG - chr3.1:85672885-85672904 None:intergenic 60.0%
GCCTGGAACAGTGACTGCAC+CGG - chr3.1:85673849-85673868 None:intergenic 60.0%
GGTTGAGGGTCCATCTGGCA+AGG - chr3.1:85672914-85672933 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 85669353 85673878 85669353 ID=MS.gene067144
chr3.1 mRNA 85669353 85673878 85669353 ID=MS.gene067144.t1;Parent=MS.gene067144
chr3.1 exon 85669353 85669619 85669353 ID=MS.gene067144.t1.exon1;Parent=MS.gene067144.t1
chr3.1 CDS 85669353 85669619 85669353 ID=cds.MS.gene067144.t1;Parent=MS.gene067144.t1
chr3.1 exon 85670367 85670649 85670367 ID=MS.gene067144.t1.exon2;Parent=MS.gene067144.t1
chr3.1 CDS 85670367 85670649 85670367 ID=cds.MS.gene067144.t1;Parent=MS.gene067144.t1
chr3.1 exon 85670863 85670996 85670863 ID=MS.gene067144.t1.exon3;Parent=MS.gene067144.t1
chr3.1 CDS 85670863 85670996 85670863 ID=cds.MS.gene067144.t1;Parent=MS.gene067144.t1
chr3.1 exon 85671323 85671415 85671323 ID=MS.gene067144.t1.exon4;Parent=MS.gene067144.t1
chr3.1 CDS 85671323 85671415 85671323 ID=cds.MS.gene067144.t1;Parent=MS.gene067144.t1
chr3.1 exon 85671696 85671829 85671696 ID=MS.gene067144.t1.exon5;Parent=MS.gene067144.t1
chr3.1 CDS 85671696 85671829 85671696 ID=cds.MS.gene067144.t1;Parent=MS.gene067144.t1
chr3.1 exon 85672185 85672337 85672185 ID=MS.gene067144.t1.exon6;Parent=MS.gene067144.t1
chr3.1 CDS 85672185 85672337 85672185 ID=cds.MS.gene067144.t1;Parent=MS.gene067144.t1
chr3.1 exon 85672429 85672462 85672429 ID=MS.gene067144.t1.exon7;Parent=MS.gene067144.t1
chr3.1 CDS 85672429 85672462 85672429 ID=cds.MS.gene067144.t1;Parent=MS.gene067144.t1
chr3.1 exon 85672801 85672950 85672801 ID=MS.gene067144.t1.exon8;Parent=MS.gene067144.t1
chr3.1 CDS 85672801 85672950 85672801 ID=cds.MS.gene067144.t1;Parent=MS.gene067144.t1
chr3.1 exon 85673037 85673171 85673037 ID=MS.gene067144.t1.exon9;Parent=MS.gene067144.t1
chr3.1 CDS 85673037 85673171 85673037 ID=cds.MS.gene067144.t1;Parent=MS.gene067144.t1
chr3.1 exon 85673816 85673878 85673816 ID=MS.gene067144.t1.exon10;Parent=MS.gene067144.t1
chr3.1 CDS 85673816 85673878 85673816 ID=cds.MS.gene067144.t1;Parent=MS.gene067144.t1
Gene Sequence

>MS.gene067144

ATGAGTAAAGCAAATAGTACATTGTGTGCCAAAGATGAAGAGCGTCCACTCAGAATTACCAGATCAAGGGCAAAGGTTTTGGGAGGACCCTCTTCGGAAAATGAAGGGAAAAGAGCAACAGCTTCCAAAAAGGTTGTTTCTTCTGAGAATAAAACATGTGTTGCTGTTCCTGATGTTCCTCACCGTAAAAGAAGGGCAGGGCTTACTGATGTAACTAACATCACTGCAAAACCACATGATAAACGTGTTAAACAATCCAATTTTCAGGTATAAATCCCAATTTTGTCACCAAATTCATGTTTTAAATTATATCAATATCACCATATAATTAGGAAGAAGACCTAAAAACTATCAGAAAGATTTGAAATTAATGAGTTGGACTAAAATATGGTTTATGATAGAATAGAACATTATGGCGTAATTTGATCCTGGTAGCCGACCCCACTTAGTTGAAAAAAGCTTGGTTGTTGTTATCACCATATCATTAGGAAATGATAGTTTTTTTTTTTTTTTTTTTTACAAACATGCAGATTGATCTATCTAGGTAATTGGAATGAAAAATTATTAGTGTCATATATGCCATAAAATAAAATGTACCAATTGAACTTGGTCGAGCAAACTCTTAATAGATTTGCCTTCAAAGTTGGGTATGTAAGTCAGCTGAAATTGCTAGAGGGGTTTAGTACCCAAAACATAAAATTTTCATTACACAGCTATAAGACTTGCAATGTTATATGAAAGATACAAAATGCTCTCAATTTTATATAAATTGTAGAATCTCATCTTAGGTGGTAGAGACATGTGTGGAAGCAGAGACCCTAGTAAAGAGAGTAGGTTAGACGAAAGATTGTCCAATAGTTAAGAGGTGAAGAGAACTATTGCAAATAACTCACAACAGATCGAAATAGTTTGTTTTTAGACATGATTCACAATAGAACACTATGACATAATTGTTACTTAGTAGAAAACTTTGTTGCTGTGATTGTTAATGCCGATTAGTTATCCATTTTACAGGCCAAAGGAGTTTACCAAAAGAAAAACACAAAGCTAACTTCAGATGTCTCCATTGAAGTTTCATCAGCACAAGAGGATGTTAAAGAGAAGGTAGCTGAAGAATTGTCTACCATAAAGATGGTAGAGTCAAAAGACACCATTGCTGCAGTAACTTTGGTTGATGAACCAACTGAACATTGTATGTCCAACAACATAAGTGACCATGTTATGACAGACACCACACTTTCAATGCAAGAATGTGTGAACTCTGGTGAACTCGCTACCTCTCCAAGTCCAAACAAAGGTTTATTTCAATAATCTCATATATTTTACTACTAGTATAAAACATGTTTTAGGTATATAATACCATATGCTAAATTGCAATGTCATAAGATTGCCCTTTGGATAATATAAAAAAAGTTACTAGGTGTAAGCCACTAACTCACTAGAAAGGTGAAATATCTTAGAAGTTTGGATACCATAATTACTGTCATGTTGTCTTGATTGTATTGTGCAGACATAAATATGATTTGTGAGAAGGTAGGAGCCTCGGATCGCCTGACCTTTGTAGACATCGATAAAAAGTTAAAGGATTCTCAAATTTGGAGTGCTTATGCCCCTGATATATACAACAAAGTTCGAGTCACCGAGGTTTGTCCGTAATTCATTATTAAACAATCTTATGCTGCACATCTCAACTGCTTCTGCTTTCTTCTTTGTCATAATCTGACTGCATTATTATTATTATTACTTTATAATAGGGTTCTTCAGTTTTAGAGTATAACTTTCAATGTAAGCAAGTATTCTAGGATAGCCAGGAGCATATTTCATTTTGCAATATTTTATATTATTATAATGTCAGTTTTGCTGCATAAGAGAACATTCCAAAGTAATCCTATTTTTGTACTAAGAATAGAGCAGAATCATTAGGTTCACTACAAAAACATTGATGATAAGTTTTGGTGAAATCTCTTCAGCTTGAGAAAAGACCATCAACCAATTACATGGAGAAGTTGCAGCAAGATATTTCTCCAAGCATGCGTGGAATTCTGATTGATTGGCTTGTGGAGGTCAGTCTTGTGGCATTGGCTTCGTGTACATTTATATATTTGAGCAATCTTTAGCTTTTCCTTTTTGTCCATAACCTTATCAAAGAATTCTCATCTACCGCCTTTCAATCAAAAACATAGTTGAATGATAGGATATATACAATGTGATGGATAACTACAACTCTTTATGATGATCAGGTTATAGTTGCATTTGAAATGGAGAATCCTTAATTACAGTTTGTTGAAGTTTACCATCAAGCTTTTGTTGTGGCTTTGCTAAAGGTGTCCTATTCCTTTTCAGGTTTCTGAGGAATATAAGCTGGTTCCAGACACTCTTTACCTTACTGTGAACCTCATTGATCGGTTTCTCTCAACAAGTTTGATTCAGAAACACAGGCTCCAGTTGCTTGGTGTTACTTGCATGTTCATTGCATCGTAAGTACTATTTTTTGTAATGGTCCTGGTTAACATAAGTTCCCGTTGCTCAGAGTTAGAATTCTAGATGATATGTCTTCTTTTTGAACTATGAACTAAGGATATCTAGGCTTTCAAAATGATAAAGCAGATAATGTCAATCACCTTTCGATCCTCAGTTTACTGTGGAGATGATAATTATTTTCCAAAATGCTACTTTTCTCTTTAACTTGTATTTGTTGATTATTCATGAATCATTTAATCCGAATGCATTTGGTGATAGTTACAAGTGATTATCTATTATCTAAGATATCATGTATGTTTTTTCCCAATATCATTCGGTCTAAGATGCACTTCTTTTCTTCATGGCTTAAAGAAAATATGAAGAGATGTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACATACACAAAAGAAGAGGTAGTAAAAATGGAGAAGGAAGTTTTAAACCTTCTGCGTTTTCAGTTATCTGTTCCCACAACCAAAACATTTCTCAGGTATGTAGTGTACTGTTTATTTATTAACACTTTGTTAGAAAATACTACTTAAAACTTCATTGAACTAAGTTGATCTATTATTGTCTTTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGTACTATAGTTGTTATCCACTATCTACAATTTAACTTAGTATGTGTTTGGTTTCGTGGTAGAGATAACCAAAAGTGGTTCTAGACACAAAATGGATTTTGACATGTTTGATGGATGTCAGTTGTAATTGATTTTTATTTTTTTTTGCCTCAAGAAGTGATTCTAACCAAAAGCTAGGATTTATAGCTTTTGACTCTAAATGTGATTTTTACATACAAATTTGCTGTTCAACTTACGTCTAGAATCGATTTTTGACATTGCAAAATCAAACACGCTGGATTATTTTATGCTGACAGGAAAAATGCAACTCAATGCGTTAAACTTTATCTTGTTATACAGGTTCCTCTTGCTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTCGCTCTTGTTGAATACAGCTTCTTACAGTTTCTACCTTCTCGTGTGGCTGCTTCTGCTGTATTCCTTGCCAGATGGACCCTCAACCACTCAGAACATCCATGGGTATGAAATGTTGACTAGTATCAAGTTACCTTTGTTTAGAAGATATAAATAGAAATTTGAAGAGTCGCATGCATTTATATATGCAGACTACAACTCTGGAGCATTTTACCAACTACAAAGCTTCAGAGCTAAAACCAGTTGTTCTTGCACTGGAAGATCTGCAACTTAATACCAAAGGTTGTTCTCTCCATGCTATACGTGAGAAATATAAACATGAGAAGGTTAGAATAACAAACTCTTATCCTTTTTTCAGTTGACCAATGTTTTAAATCCACTAGTCACACTGAAAATGCTACTCCATCGGTGCCTTTTTATAAGCATCTTTGACACTTTTCACATATATTAAGAAAAGTTGATAGTGTGATTGATGTATATTCTGTGTATGACTATCACTAAATTGTCCATTATAATTAGTAGTATTAATATGAGATATATTTTAAAAATAACAAAAATCTATCTAGTAGTTTGAAAGATGACTTACATTCAGGGACACTTTTTTCTCTCCAAATAGTGCTTATAAATAGGAACAGAGATAGTATATAGGAGCAGCAATAGCAATACACTCTTTTTAATTCCAACATTCTCAATTATTGAGTGAAATTCATGTAAGTTTCGTCATTTTAAAAATAAGTCTTGCATAAAGTGATGAGACACATGAATTTCACTAAAAGAGTAATGAAAAGAGAGTGCTAGACCGTGTGTACAAGTACTTCTCCAGTTGTATTGTACCCTTTAGAGGAAACATCTTTTGCATCTGATTGAGGTTCATAAACCGGCAAAATAATATGCTGTCCTATCCATAGCTTTATTGAAAAAAAAGGTATATACATAATTACACAAAATTGACTTTTGCTTCATGTGACAGTTCAATGGTGTGGCAAAACTGTCTCCAAAACCGGTGCAGTCACTGTTCCAGGCTCAAGTGTAA

Protein sequence

>MS.gene067144.t1

MSKANSTLCAKDEERPLRITRSRAKVLGGPSSENEGKRATASKKVVSSENKTCVAVPDVPHRKRRAGLTDVTNITAKPHDKRVKQSNFQAKGVYQKKNTKLTSDVSIEVSSAQEDVKEKVAEELSTIKMVESKDTIAAVTLVDEPTEHCMSNNISDHVMTDTTLSMQECVNSGELATSPSPNKDINMICEKVGASDRLTFVDIDKKLKDSQIWSAYAPDIYNKVRVTELEKRPSTNYMEKLQQDISPSMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSTSLIQKHRLQLLGVTCMFIASKYEEMCAPRVEEFCFITDNTYTKEEVVKMEKEVLNLLRFQLSVPTTKTFLRRFIQAAQSSYKVPLAELEFLANYLAELALVEYSFLQFLPSRVAASAVFLARWTLNHSEHPWTTTLEHFTNYKASELKPVVLALEDLQLNTKGCSLHAIREKYKHEKFNGVAKLSPKPVQSLFQAQV