Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067143.t1 | XP_024635368.1 | 94.4 | 481 | 20 | 2 | 1 | 477 | 1 | 478 | 1.60E-246 | 861.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067143.t1 | Q147G5 | 50.6 | 470 | 166 | 10 | 13 | 473 | 22 | 434 | 1.7e-103 | 377.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067143.t1 | G7JBQ1 | 94.4 | 481 | 20 | 2 | 1 | 477 | 1 | 478 | 1.2e-246 | 861.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene067143 | 0.817373 | 3.41E-52 | -1.69E-46 |
| MS.gene049418 | MS.gene067143 | 0.821543 | 3.82E-53 | -1.69E-46 |
| MS.gene049596 | MS.gene067143 | 0.806221 | 9.14E-50 | -1.69E-46 |
| MS.gene049622 | MS.gene067143 | 0.810429 | 1.16E-50 | -1.69E-46 |
| MS.gene04985 | MS.gene067143 | 0.819196 | 1.32E-52 | -1.69E-46 |
| MS.gene049989 | MS.gene067143 | 0.912822 | 1.25E-83 | -1.69E-46 |
| MS.gene050297 | MS.gene067143 | 0.893707 | 4.89E-75 | -1.69E-46 |
| MS.gene050310 | MS.gene067143 | 0.829351 | 5.41E-55 | -1.69E-46 |
| MS.gene05054 | MS.gene067143 | 0.802526 | 5.38E-49 | -1.69E-46 |
| MS.gene050648 | MS.gene067143 | 0.806043 | 9.96E-50 | -1.69E-46 |
| MS.gene051094 | MS.gene067143 | 0.852745 | 3.77E-61 | -1.69E-46 |
| MS.gene05124 | MS.gene067143 | 0.807149 | 5.82E-50 | -1.69E-46 |
| MS.gene051263 | MS.gene067143 | 0.84492 | 5.61E-59 | -1.69E-46 |
| MS.gene051478 | MS.gene067143 | 0.816412 | 5.61E-52 | -1.69E-46 |
| MS.gene051629 | MS.gene067143 | 0.847441 | 1.15E-59 | -1.69E-46 |
| MS.gene051742 | MS.gene067143 | 0.820276 | 7.47E-53 | -1.69E-46 |
| MS.gene051816 | MS.gene067143 | 0.802136 | 6.47E-49 | -1.69E-46 |
| MS.gene051955 | MS.gene067143 | 0.852129 | 5.65E-61 | -1.69E-46 |
| MS.gene052143 | MS.gene067143 | 0.858717 | 6.80E-63 | -1.69E-46 |
| MS.gene052308 | MS.gene067143 | 0.807152 | 5.81E-50 | -1.69E-46 |
| MS.gene052367 | MS.gene067143 | 0.881008 | 3.43E-70 | -1.69E-46 |
| MS.gene053173 | MS.gene067143 | 0.825817 | 3.81E-54 | -1.69E-46 |
| MS.gene053348 | MS.gene067143 | 0.834604 | 2.72E-56 | -1.69E-46 |
| MS.gene053416 | MS.gene067143 | 0.876428 | 1.41E-68 | -1.69E-46 |
| MS.gene053417 | MS.gene067143 | 0.874367 | 7.14E-68 | -1.69E-46 |
| MS.gene053500 | MS.gene067143 | 0.807356 | 5.26E-50 | -1.69E-46 |
| MS.gene05369 | MS.gene067143 | 0.823237 | 1.54E-53 | -1.69E-46 |
| MS.gene053929 | MS.gene067143 | 0.820931 | 5.28E-53 | -1.69E-46 |
| MS.gene054551 | MS.gene067143 | 0.841027 | 6.09E-58 | -1.69E-46 |
| MS.gene054593 | MS.gene067143 | 0.820508 | 6.61E-53 | -1.69E-46 |
| MS.gene054643 | MS.gene067143 | 0.844752 | 6.22E-59 | -1.69E-46 |
| MS.gene055308 | MS.gene067143 | 0.823837 | 1.12E-53 | -1.69E-46 |
| MS.gene055411 | MS.gene067143 | 0.836828 | 7.44E-57 | -1.69E-46 |
| MS.gene055578 | MS.gene067143 | 0.8353 | 1.82E-56 | -1.69E-46 |
| MS.gene055579 | MS.gene067143 | 0.822667 | 2.10E-53 | -1.69E-46 |
| MS.gene055781 | MS.gene067143 | 0.825533 | 4.45E-54 | -1.69E-46 |
| MS.gene055957 | MS.gene067143 | 0.86926 | 3.54E-66 | -1.69E-46 |
| MS.gene056041 | MS.gene067143 | 0.908732 | 1.24E-81 | -1.69E-46 |
| MS.gene056042 | MS.gene067143 | 0.887457 | 1.40E-72 | -1.69E-46 |
| MS.gene056169 | MS.gene067143 | 0.805001 | 1.65E-49 | -1.69E-46 |
| MS.gene056228 | MS.gene067143 | 0.811173 | 7.99E-51 | -1.69E-46 |
| MS.gene056335 | MS.gene067143 | 0.817318 | 3.51E-52 | -1.69E-46 |
| MS.gene05640 | MS.gene067143 | 0.812687 | 3.74E-51 | -1.69E-46 |
| MS.gene056526 | MS.gene067143 | 0.878157 | 3.52E-69 | -1.69E-46 |
| MS.gene056528 | MS.gene067143 | 0.820964 | 5.19E-53 | -1.69E-46 |
| MS.gene057358 | MS.gene067143 | 0.802052 | 6.74E-49 | -1.69E-46 |
| MS.gene057458 | MS.gene067143 | 0.819527 | 1.11E-52 | -1.69E-46 |
| MS.gene057483 | MS.gene067143 | 0.824021 | 1.01E-53 | -1.69E-46 |
| MS.gene058196 | MS.gene067143 | 0.884471 | 1.86E-71 | -1.69E-46 |
| MS.gene058197 | MS.gene067143 | 0.896616 | 3.11E-76 | -1.69E-46 |
| MS.gene058198 | MS.gene067143 | 0.892442 | 1.58E-74 | -1.69E-46 |
| MS.gene058818 | MS.gene067143 | 0.833881 | 4.13E-56 | -1.69E-46 |
| MS.gene058844 | MS.gene067143 | 0.805174 | 1.52E-49 | -1.69E-46 |
| MS.gene059300 | MS.gene067143 | 0.896673 | 2.94E-76 | -1.69E-46 |
| MS.gene059553 | MS.gene067143 | 0.851152 | 1.07E-60 | -1.69E-46 |
| MS.gene060473 | MS.gene067143 | 0.885016 | 1.17E-71 | -1.69E-46 |
| MS.gene060492 | MS.gene067143 | 0.8332 | 6.11E-56 | -1.69E-46 |
| MS.gene060565 | MS.gene067143 | 0.889984 | 1.48E-73 | -1.69E-46 |
| MS.gene06057 | MS.gene067143 | 0.915004 | 9.85E-85 | -1.69E-46 |
| MS.gene06093 | MS.gene067143 | 0.82354 | 1.31E-53 | -1.69E-46 |
| MS.gene061099 | MS.gene067143 | 0.878003 | 3.99E-69 | -1.69E-46 |
| MS.gene061260 | MS.gene067143 | 0.856912 | 2.33E-62 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067143.t1 | MTR_3g107970 | 94.387 | 481 | 20 | 2 | 1 | 477 | 1 | 478 | 0.0 | 930 |
| MS.gene067143.t1 | MTR_1g011470 | 57.451 | 463 | 137 | 8 | 17 | 473 | 14 | 422 | 4.40e-178 | 506 |
| MS.gene067143.t1 | MTR_2g102520 | 47.942 | 486 | 216 | 14 | 11 | 473 | 8 | 479 | 3.25e-126 | 375 |
| MS.gene067143.t1 | MTR_2g102550 | 43.579 | 475 | 200 | 8 | 3 | 465 | 2 | 420 | 4.57e-119 | 355 |
| MS.gene067143.t1 | MTR_3g088415 | 53.929 | 280 | 123 | 3 | 201 | 474 | 225 | 504 | 7.98e-100 | 309 |
| MS.gene067143.t1 | MTR_3g088405 | 52.593 | 270 | 122 | 2 | 200 | 463 | 227 | 496 | 6.51e-99 | 306 |
| MS.gene067143.t1 | MTR_1g018680 | 50.000 | 274 | 131 | 1 | 205 | 472 | 80 | 353 | 2.47e-88 | 275 |
| MS.gene067143.t1 | MTR_3g088415 | 58.065 | 217 | 87 | 1 | 200 | 412 | 224 | 440 | 2.00e-86 | 272 |
| MS.gene067143.t1 | MTR_3g102530 | 46.953 | 279 | 142 | 1 | 196 | 468 | 64 | 342 | 2.19e-82 | 259 |
| MS.gene067143.t1 | MTR_3g102510 | 45.455 | 264 | 140 | 1 | 209 | 468 | 67 | 330 | 1.03e-76 | 244 |
| MS.gene067143.t1 | MTR_3g102520 | 45.221 | 272 | 143 | 1 | 203 | 468 | 78 | 349 | 1.14e-75 | 242 |
| MS.gene067143.t1 | MTR_3g102560 | 50.000 | 254 | 116 | 2 | 221 | 468 | 69 | 317 | 9.79e-71 | 228 |
| MS.gene067143.t1 | MTR_3g102540 | 51.261 | 238 | 108 | 4 | 232 | 468 | 31 | 261 | 2.89e-68 | 219 |
| MS.gene067143.t1 | MTR_3g088415 | 61.585 | 164 | 59 | 1 | 200 | 359 | 224 | 387 | 2.40e-67 | 221 |
| MS.gene067143.t1 | MTR_5g023790 | 40.959 | 271 | 148 | 5 | 201 | 466 | 156 | 419 | 2.42e-57 | 196 |
| MS.gene067143.t1 | MTR_5g088980 | 40.370 | 270 | 150 | 6 | 202 | 466 | 150 | 413 | 2.81e-57 | 196 |
| MS.gene067143.t1 | MTR_5g023790 | 43.966 | 232 | 118 | 5 | 201 | 427 | 156 | 380 | 4.86e-55 | 188 |
| MS.gene067143.t1 | MTR_8g074000 | 39.608 | 255 | 143 | 4 | 216 | 466 | 176 | 423 | 2.61e-54 | 188 |
| MS.gene067143.t1 | MTR_7g089080 | 39.560 | 273 | 154 | 7 | 201 | 466 | 183 | 451 | 2.05e-52 | 191 |
| MS.gene067143.t1 | MTR_5g023790 | 44.643 | 168 | 87 | 3 | 201 | 363 | 156 | 322 | 2.10e-39 | 146 |
| MS.gene067143.t1 | MTR_3g060770 | 31.048 | 248 | 160 | 7 | 185 | 427 | 2 | 243 | 3.41e-25 | 105 |
| MS.gene067143.t1 | MTR_3g060410 | 34.375 | 192 | 117 | 5 | 241 | 427 | 131 | 318 | 9.89e-25 | 105 |
| MS.gene067143.t1 | MTR_3g061680 | 31.169 | 231 | 149 | 6 | 202 | 427 | 8 | 233 | 1.95e-24 | 103 |
| MS.gene067143.t1 | MTR_3g060400 | 31.111 | 225 | 135 | 7 | 213 | 427 | 25 | 239 | 1.13e-23 | 100 |
| MS.gene067143.t1 | MTR_3g460990 | 31.111 | 225 | 135 | 7 | 213 | 427 | 25 | 239 | 1.13e-23 | 100 |
| MS.gene067143.t1 | MTR_3g060820 | 30.705 | 241 | 151 | 7 | 192 | 427 | 4 | 233 | 1.59e-23 | 100 |
| MS.gene067143.t1 | MTR_1g032850 | 31.687 | 243 | 143 | 8 | 174 | 407 | 303 | 531 | 1.53e-19 | 92.0 |
| MS.gene067143.t1 | MTR_5g044040 | 40.260 | 77 | 46 | 0 | 267 | 343 | 7 | 83 | 8.10e-17 | 77.0 |
| MS.gene067143.t1 | MTR_5g011900 | 29.936 | 157 | 107 | 2 | 229 | 384 | 86 | 240 | 2.49e-15 | 75.9 |
| MS.gene067143.t1 | MTR_6g045270 | 27.817 | 284 | 170 | 13 | 208 | 477 | 38 | 300 | 1.19e-13 | 72.4 |
| MS.gene067143.t1 | MTR_3g100710 | 28.409 | 176 | 113 | 4 | 230 | 396 | 80 | 251 | 1.14e-12 | 69.7 |
| MS.gene067143.t1 | MTR_4g080990 | 27.168 | 173 | 119 | 4 | 230 | 396 | 75 | 246 | 3.87e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067143.t1 | AT5G11300 | 50.851 | 470 | 165 | 11 | 13 | 473 | 22 | 434 | 5.93e-142 | 414 |
| MS.gene067143.t1 | AT5G25380 | 50.524 | 477 | 169 | 11 | 10 | 473 | 19 | 441 | 7.51e-141 | 412 |
| MS.gene067143.t1 | AT5G25380 | 49.580 | 476 | 169 | 9 | 10 | 473 | 19 | 435 | 2.71e-139 | 407 |
| MS.gene067143.t1 | AT5G25380 | 49.580 | 476 | 169 | 9 | 10 | 473 | 19 | 435 | 2.71e-139 | 407 |
| MS.gene067143.t1 | AT5G25380 | 49.455 | 459 | 162 | 8 | 10 | 457 | 19 | 418 | 8.43e-135 | 395 |
| MS.gene067143.t1 | AT1G80370 | 46.396 | 444 | 194 | 7 | 31 | 465 | 42 | 450 | 1.21e-123 | 369 |
| MS.gene067143.t1 | AT1G15570 | 47.754 | 423 | 186 | 8 | 62 | 473 | 52 | 450 | 8.04e-121 | 361 |
| MS.gene067143.t1 | AT5G11300 | 48.662 | 411 | 146 | 10 | 13 | 415 | 22 | 375 | 1.08e-113 | 341 |
| MS.gene067143.t1 | AT1G44110 | 54.044 | 272 | 121 | 1 | 196 | 463 | 174 | 445 | 2.56e-105 | 322 |
| MS.gene067143.t1 | AT5G43080 | 51.661 | 271 | 127 | 1 | 202 | 468 | 73 | 343 | 2.83e-96 | 295 |
| MS.gene067143.t1 | AT1G47210 | 48.649 | 296 | 144 | 2 | 179 | 468 | 67 | 360 | 7.70e-96 | 294 |
| MS.gene067143.t1 | AT5G43080 | 52.030 | 271 | 121 | 2 | 202 | 468 | 73 | 338 | 4.45e-95 | 291 |
| MS.gene067143.t1 | AT1G77390 | 51.429 | 280 | 130 | 3 | 200 | 473 | 162 | 441 | 1.12e-91 | 286 |
| MS.gene067143.t1 | AT1G47220 | 51.673 | 269 | 124 | 1 | 202 | 464 | 42 | 310 | 2.31e-90 | 278 |
| MS.gene067143.t1 | AT1G47230 | 48.175 | 274 | 136 | 1 | 201 | 468 | 80 | 353 | 1.16e-88 | 276 |
| MS.gene067143.t1 | AT1G47230 | 48.000 | 275 | 136 | 2 | 201 | 468 | 80 | 354 | 5.15e-87 | 271 |
| MS.gene067143.t1 | AT5G06150 | 39.721 | 287 | 160 | 6 | 193 | 475 | 158 | 435 | 2.46e-57 | 196 |
| MS.gene067143.t1 | AT1G20610 | 39.114 | 271 | 153 | 5 | 201 | 466 | 161 | 424 | 6.38e-56 | 192 |
| MS.gene067143.t1 | AT1G76310 | 40.146 | 274 | 151 | 6 | 199 | 466 | 159 | 425 | 1.58e-54 | 188 |
| MS.gene067143.t1 | AT3G11520 | 40.892 | 269 | 150 | 4 | 201 | 466 | 143 | 405 | 2.27e-53 | 185 |
| MS.gene067143.t1 | AT2G26760 | 40.310 | 258 | 143 | 6 | 201 | 453 | 114 | 365 | 2.30e-52 | 181 |
| MS.gene067143.t1 | AT3G11520 | 44.304 | 237 | 123 | 4 | 201 | 434 | 143 | 373 | 3.03e-52 | 181 |
| MS.gene067143.t1 | AT1G76310 | 43.404 | 235 | 120 | 6 | 199 | 427 | 159 | 386 | 1.23e-51 | 179 |
| MS.gene067143.t1 | AT1G16330 | 38.976 | 254 | 146 | 3 | 216 | 466 | 395 | 642 | 5.33e-49 | 178 |
| MS.gene067143.t1 | AT1G76310 | 36.424 | 302 | 151 | 7 | 199 | 466 | 159 | 453 | 1.23e-48 | 173 |
| MS.gene067143.t1 | AT2G17620 | 40.672 | 268 | 147 | 5 | 201 | 463 | 155 | 415 | 6.92e-48 | 171 |
| MS.gene067143.t1 | AT4G35620 | 39.700 | 267 | 149 | 5 | 201 | 462 | 156 | 415 | 2.84e-47 | 169 |
| MS.gene067143.t1 | AT4G37490 | 36.101 | 277 | 160 | 8 | 200 | 466 | 148 | 417 | 6.34e-47 | 168 |
| MS.gene067143.t1 | AT4G35620 | 42.672 | 232 | 121 | 5 | 201 | 427 | 156 | 380 | 1.30e-45 | 163 |
| MS.gene067143.t1 | AT1G76310 | 45.029 | 171 | 87 | 4 | 199 | 363 | 159 | 328 | 3.91e-38 | 142 |
| MS.gene067143.t1 | AT5G06150 | 41.143 | 175 | 98 | 3 | 193 | 363 | 158 | 331 | 1.35e-37 | 140 |
| MS.gene067143.t1 | AT1G20590 | 43.312 | 157 | 83 | 2 | 271 | 427 | 63 | 213 | 3.41e-34 | 129 |
| MS.gene067143.t1 | AT1G47210 | 47.656 | 128 | 59 | 2 | 179 | 300 | 67 | 192 | 7.48e-30 | 115 |
| MS.gene067143.t1 | AT1G34460 | 33.143 | 175 | 92 | 4 | 193 | 363 | 234 | 387 | 1.56e-20 | 94.7 |
| MS.gene067143.t1 | AT1G34460 | 33.143 | 175 | 92 | 4 | 193 | 363 | 248 | 401 | 1.64e-20 | 94.7 |
| MS.gene067143.t1 | AT1G34460 | 33.143 | 175 | 92 | 4 | 193 | 363 | 248 | 401 | 1.64e-20 | 94.7 |
| MS.gene067143.t1 | AT1G34460 | 33.143 | 175 | 92 | 4 | 193 | 363 | 248 | 401 | 1.64e-20 | 94.7 |
| MS.gene067143.t1 | AT1G34460 | 33.143 | 175 | 92 | 4 | 193 | 363 | 248 | 401 | 1.64e-20 | 94.7 |
| MS.gene067143.t1 | AT1G34460 | 33.143 | 175 | 92 | 4 | 193 | 363 | 245 | 398 | 1.88e-20 | 94.4 |
| MS.gene067143.t1 | AT1G34460 | 33.143 | 175 | 92 | 4 | 193 | 363 | 245 | 398 | 1.88e-20 | 94.4 |
| MS.gene067143.t1 | AT1G34460 | 33.143 | 175 | 92 | 4 | 193 | 363 | 248 | 401 | 1.91e-20 | 94.4 |
| MS.gene067143.t1 | AT1G34460 | 33.143 | 175 | 92 | 4 | 193 | 363 | 248 | 401 | 1.91e-20 | 94.4 |
| MS.gene067143.t1 | AT1G14750 | 30.705 | 241 | 135 | 8 | 174 | 401 | 151 | 372 | 3.38e-16 | 80.9 |
| MS.gene067143.t1 | AT1G14750 | 30.705 | 241 | 135 | 8 | 174 | 401 | 319 | 540 | 3.44e-16 | 81.6 |
| MS.gene067143.t1 | AT1G14750 | 30.705 | 241 | 135 | 8 | 174 | 401 | 319 | 540 | 3.48e-16 | 81.6 |
| MS.gene067143.t1 | AT1G14750 | 30.705 | 241 | 134 | 9 | 174 | 401 | 151 | 371 | 5.45e-15 | 77.0 |
Find 93 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTAAAGGATTCTCAAATT+TGG | 0.182649 | 3.1:+85681935 | MS.gene067143:CDS |
| CAGATCAAGGGCAAAGGTTT+TGG | 0.191093 | 3.1:+85680419 | MS.gene067143:CDS |
| TGGGATTTATACCTGAAAAT+TGG | 0.195568 | 3.1:-85680616 | None:intergenic |
| CGAACTTTGTTGTATATATC+AGG | 0.212202 | 3.1:-85681970 | None:intergenic |
| AACAGTGACTGCACCGGTTT+TGG | 0.269524 | 3.1:-85684842 | None:intergenic |
| CTGCAACTTCTCCATGTAAT+TGG | 0.276568 | 3.1:-85682347 | None:intergenic |
| TACATACCTGAGAAATGTTT+TGG | 0.301501 | 3.1:-85683327 | None:intergenic |
| GAGTGGACGCTCTTCATCTT+TGG | 0.302032 | 3.1:-85680388 | None:intergenic |
| TATTGAAATAAACCTTTGTT+TGG | 0.308273 | 3.1:-85681646 | None:intergenic |
| TCTTGCTGAACTGGAATTCC+TGG | 0.315133 | 3.1:+85683810 | MS.gene067143:CDS |
| ACCGGTGCAGTCACTGTTCC+AGG | 0.328369 | 3.1:+85684847 | MS.gene067143:CDS |
| ACAGGTTCCTCTTGCTGAAC+TGG | 0.342894 | 3.1:+85683801 | MS.gene067143:intron |
| CACCATTGCTGCAGTAACTT+TGG | 0.388234 | 3.1:+85681507 | MS.gene067143:CDS |
| TGCAAGTAACACCAAGCAAC+TGG | 0.415916 | 3.1:-85682799 | None:intergenic |
| CAAAACCTTTGCCCTTGATC+TGG | 0.423251 | 3.1:-85680418 | None:intergenic |
| AATAAACCTTTGTTTGGACT+TGG | 0.425078 | 3.1:-85681640 | None:intergenic |
| TCTTCCAGTGCAAGAACAAC+TGG | 0.426769 | 3.1:-85684089 | None:intergenic |
| ACAGTAAGGTAAAGAGTGTC+TGG | 0.432601 | 3.1:-85682725 | None:intergenic |
| AAGAGCAACAGCTTCCAAAA+AGG | 0.433513 | 3.1:+85680470 | MS.gene067143:CDS |
| TGAGTGGTTGAGGGTCCATC+TGG | 0.438657 | 3.1:-85683920 | None:intergenic |
| TGCGTGGAATTCTGATTGAT+TGG | 0.439226 | 3.1:+85682389 | MS.gene067143:CDS |
| ATATATGCAGACTACAACTC+TGG | 0.439974 | 3.1:+85684031 | MS.gene067143:intron |
| GGCAAAACTGTCTCCAAAAC+CGG | 0.446811 | 3.1:+85684829 | MS.gene067143:CDS |
| TAGCTCTGAAGCTTTGTAGT+TGG | 0.450188 | 3.1:-85684063 | None:intergenic |
| AACATGGTCACTTATGTTGT+TGG | 0.450701 | 3.1:-85681557 | None:intergenic |
| TATCGATGTCTACAAAGGTC+AGG | 0.459319 | 3.1:-85681909 | None:intergenic |
| ATGGATGTTCTGAGTGGTTG+AGG | 0.460808 | 3.1:-85683930 | None:intergenic |
| CATAAATTTACACTTGAGCC+TGG | 0.467011 | 3.1:-85684865 | None:intergenic |
| CTGCTGTATTCCTTGCCAGA+TGG | 0.472091 | 3.1:+85683905 | MS.gene067143:CDS |
| CCACAACCAAAACATTTCTC+AGG | 0.475913 | 3.1:+85683321 | MS.gene067143:CDS |
| ATCAGAATTCCACGCATGCT+TGG | 0.476428 | 3.1:-85682382 | None:intergenic |
| CACTCAGAATTACCAGATCA+AGG | 0.485115 | 3.1:+85680406 | MS.gene067143:CDS |
| TTGTGCTGATGAAACTTCAA+TGG | 0.487200 | 3.1:-85681422 | None:intergenic |
| GATCAATGAGGTTCACAGTA+AGG | 0.489451 | 3.1:-85682739 | None:intergenic |
| TGCTTCATGTGACAGTTCAA+TGG | 0.489558 | 3.1:+85684803 | MS.gene067143:intron |
| TGTAAGAAGATTGTGCTGCT+TGG | 0.497059 | 3.1:-85683443 | None:intergenic |
| ATGTTCCTCACCGTAAAAGA+AGG | 0.498778 | 3.1:+85680532 | MS.gene067143:CDS |
| AAAACCAGTTGTTCTTGCAC+TGG | 0.503437 | 3.1:+85684085 | MS.gene067143:CDS |
| CCTCACCGTAAAAGAAGGGC+AGG | 0.504738 | 3.1:+85680537 | MS.gene067143:CDS |
| GGTTTCTGAGGAATATAAGC+TGG | 0.509301 | 3.1:+85682700 | MS.gene067143:intron |
| GAACTTTGTTGTATATATCA+GGG | 0.514973 | 3.1:-85681969 | None:intergenic |
| AATTCTGATTGATTGGCTTG+TGG | 0.519075 | 3.1:+85682396 | MS.gene067143:CDS |
| CATAAATATGATTTGTGAGA+AGG | 0.520200 | 3.1:+85681870 | MS.gene067143:CDS |
| TGAAGTTTCATCAGCACAAG+AGG | 0.526624 | 3.1:+85681426 | MS.gene067143:CDS |
| AGCATGGAGAGAACAACCTT+TGG | 0.528068 | 3.1:-85684126 | None:intergenic |
| TTACTGTGAACCTCATTGAT+CGG | 0.529430 | 3.1:+85682741 | MS.gene067143:CDS |
| TATATTTCTCACGTATAGCA+TGG | 0.531941 | 3.1:-85684142 | None:intergenic |
| TGGATGTTCTGAGTGGTTGA+GGG | 0.532302 | 3.1:-85683929 | None:intergenic |
| TCAACCACTCAGAACATCCA+TGG | 0.534173 | 3.1:+85683932 | MS.gene067143:CDS |
| AAACACAGGCTCCAGTTGCT+TGG | 0.536048 | 3.1:+85682788 | MS.gene067143:CDS |
| AGAATTGTCTACCATAAAGA+TGG | 0.537932 | 3.1:+85681471 | MS.gene067143:CDS |
| GCAGAAGCAGCCACACGAGA+AGG | 0.540170 | 3.1:-85683886 | None:intergenic |
| TTGGACATACAATGTTCAGT+TGG | 0.549012 | 3.1:-85681538 | None:intergenic |
| GGACCCTCTTCGGAAAATGA+AGG | 0.550131 | 3.1:+85680444 | MS.gene067143:CDS |
| ACCTTTGTTTGGACTTGGAG+AGG | 0.555698 | 3.1:-85681635 | None:intergenic |
| AACCAAAGTTACTGCAGCAA+TGG | 0.556672 | 3.1:-85681509 | None:intergenic |
| AAAGACATCAACCAATTACA+TGG | 0.558360 | 3.1:+85682336 | MS.gene067143:intron |
| TTGTGAGAAGGTAGGAGCCT+CGG | 0.564379 | 3.1:+85681882 | MS.gene067143:CDS |
| CAAGTTTGATTCAGAAACAC+AGG | 0.567317 | 3.1:+85682774 | MS.gene067143:CDS |
| ACAAGAGGATGTTAAAGAGA+AGG | 0.567620 | 3.1:+85681441 | MS.gene067143:CDS |
| AGCAGCACAATCTTCTTACA+AGG | 0.568751 | 3.1:+85683446 | MS.gene067143:CDS |
| GCTCTGCTAAATAATTTGCC+AGG | 0.570353 | 3.1:-85683828 | None:intergenic |
| AACTTTGTTGTATATATCAG+GGG | 0.581055 | 3.1:-85681968 | None:intergenic |
| TGTTTAACACGTTTATCATG+TGG | 0.581458 | 3.1:-85680591 | None:intergenic |
| TGAGAAATATAAACATGAGA+AGG | 0.585853 | 3.1:+85684154 | MS.gene067143:CDS |
| GCCTGGAACAGTGACTGCAC+CGG | 0.595943 | 3.1:-85684848 | None:intergenic |
| GACCCTCTTCGGAAAATGAA+GGG | 0.596652 | 3.1:+85680445 | MS.gene067143:CDS |
| GATCTGCAACTTAATACCAA+AGG | 0.597942 | 3.1:+85684110 | MS.gene067143:CDS |
| ACAGTTTCTACCTTCTCGTG+TGG | 0.603003 | 3.1:+85683876 | MS.gene067143:CDS |
| TCTGATTGATTGGCTTGTGG+AGG | 0.610856 | 3.1:+85682399 | MS.gene067143:CDS |
| TACAAAGGTCAGGCGATCCG+AGG | 0.611523 | 3.1:-85681899 | None:intergenic |
| TAATACATACACAAAAGAAG+AGG | 0.613454 | 3.1:+85683244 | MS.gene067143:CDS |
| GGTTGAGGGTCCATCTGGCA+AGG | 0.616376 | 3.1:-85683915 | None:intergenic |
| AATTACCAGATCAAGGGCAA+AGG | 0.620424 | 3.1:+85680413 | MS.gene067143:CDS |
| TTGAGAGAAACCGATCAATG+AGG | 0.621952 | 3.1:-85682751 | None:intergenic |
| AGGAATTCCAGTTCAGCAAG+AGG | 0.623808 | 3.1:-85683808 | None:intergenic |
| CAGATAACTGAAAACGCAGA+AGG | 0.624641 | 3.1:-85683295 | None:intergenic |
| ACTCAGAATTACCAGATCAA+GGG | 0.628344 | 3.1:+85680407 | MS.gene067143:CDS |
| ATGCAAGAATGTGTGAACTC+TGG | 0.628364 | 3.1:+85681601 | MS.gene067143:CDS |
| AAGCAAAATTCTTCCACTCG+AGG | 0.634099 | 3.1:-85683212 | None:intergenic |
| CAACCACTCAGAACATCCAT+GGG | 0.636239 | 3.1:+85683933 | MS.gene067143:CDS |
| ACATTCTTGCATTGAAAGTG+TGG | 0.640397 | 3.1:-85681590 | None:intergenic |
| TGTTCCTCACCGTAAAAGAA+GGG | 0.641902 | 3.1:+85680533 | MS.gene067143:CDS |
| AATATGATTTGTGAGAAGGT+AGG | 0.642690 | 3.1:+85681874 | MS.gene067143:CDS |
| GATATTTCTCCAAGCATGCG+TGG | 0.654313 | 3.1:+85682373 | MS.gene067143:CDS |
| CTTGATCTGGTAATTCTGAG+TGG | 0.660376 | 3.1:-85680405 | None:intergenic |
| ACCTCTCCAAGTCCAAACAA+AGG | 0.667488 | 3.1:+85681634 | MS.gene067143:CDS |
| ATACCCATGGATGTTCTGAG+TGG | 0.668616 | 3.1:-85683936 | None:intergenic |
| AGAGATGTGTGCTCCTCGAG+TGG | 0.670751 | 3.1:+85683199 | MS.gene067143:CDS |
| CATGTGACAGTTCAATGGTG+TGG | 0.678244 | 3.1:+85684808 | MS.gene067143:intron |
| GTGTGGTGTCTGTCATAACA+TGG | 0.706964 | 3.1:-85681573 | None:intergenic |
| CTCACCGTAAAAGAAGGGCA+GGG | 0.713304 | 3.1:+85680538 | MS.gene067143:CDS |
| CAACAAAGTTCGAGTCACCG+AGG | 0.719869 | 3.1:+85681981 | MS.gene067143:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATAAAAAAAGTTACT+AGG | + | chr3.1:85681757-85681776 | MS.gene067143:intron | 10.0% |
| !!! | TAATGAAAATTTTATGTTTT+GGG | - | chr3.1:85681047-85681066 | None:intergenic | 10.0% |
| !!! | TATAATTTAAAACATGAATT+TGG | - | chr3.1:85680651-85680670 | None:intergenic | 10.0% |
| !! | GATTGTTTAATAATGAATTA+CGG | - | chr3.1:85682012-85682031 | None:intergenic | 15.0% |
| !! | TATTTATATCTTCTAAACAA+AGG | - | chr3.1:85683986-85684005 | None:intergenic | 15.0% |
| !!! | AATTGGTACATTTTATTTTA+TGG | - | chr3.1:85680941-85680960 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTATATTATCCAA+AGG | - | chr3.1:85681753-85681772 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATATTATCCAAA+GGG | - | chr3.1:85681752-85681771 | None:intergenic | 15.0% |
| !!! | GTAATGAAAATTTTATGTTT+TGG | - | chr3.1:85681048-85681067 | None:intergenic | 15.0% |
| !! | ATCAATATCACCATATAATT+AGG | + | chr3.1:85680670-85680689 | MS.gene067143:intron | 20.0% |
| !! | TATGATAGAATAGAACATTA+TGG | + | chr3.1:85680753-85680772 | MS.gene067143:intron | 20.0% |
| !! | TATTGAAATAAACCTTTGTT+TGG | - | chr3.1:85681649-85681668 | None:intergenic | 20.0% |
| !! | TCTATTCTTAGTACAAAAAT+AGG | - | chr3.1:85682249-85682268 | None:intergenic | 20.0% |
| !!! | AAAACATTGATGATAAGTTT+TGG | + | chr3.1:85682292-85682311 | MS.gene067143:intron | 20.0% |
| !!! | AAATCTTTCTGATAGTTTTT+AGG | - | chr3.1:85680703-85680722 | None:intergenic | 20.0% |
| !!! | AAGATTTGAAATTAATGAGT+TGG | + | chr3.1:85680716-85680735 | MS.gene067143:intron | 20.0% |
| !!! | AATTTAACTTAGTATGTGTT+TGG | + | chr3.1:85683495-85683514 | MS.gene067143:intron | 20.0% |
| !!! | ACTAGTATAAAACATGTTTT+AGG | + | chr3.1:85681686-85681705 | MS.gene067143:intron | 20.0% |
| !!! | CATAGCTTTATTGAAAAAAA+AGG | + | chr3.1:85684751-85684770 | MS.gene067143:intron | 20.0% |
| !!! | CTTTTTTTTCAATAAAGCTA+TGG | - | chr3.1:85684753-85684772 | None:intergenic | 20.0% |
| !!! | GTAAGTACTATTTTTTGTAA+TGG | + | chr3.1:85682835-85682854 | MS.gene067143:intron | 20.0% |
| !!! | TAAACTTTATCTTGTTATAC+AGG | + | chr3.1:85683783-85683802 | MS.gene067143:intron | 20.0% |
| ! | AAAAGAAGAGGTAGTAAAAA+TGG | + | chr3.1:85683256-85683275 | MS.gene067143:CDS | 25.0% |
| ! | AAATTGTAGAATCTCATCTT+AGG | + | chr3.1:85681125-85681144 | MS.gene067143:intron | 25.0% |
| ! | ACTATCATTTCCTAATGATA+TGG | - | chr3.1:85680839-85680858 | None:intergenic | 25.0% |
| ! | ACTTCAACAAACTGTAATTA+AGG | - | chr3.1:85682628-85682647 | None:intergenic | 25.0% |
| ! | AGAATTCTTTGATAAGGTTA+TGG | - | chr3.1:85682492-85682511 | None:intergenic | 25.0% |
| ! | AGACATCGATAAAAAGTTAA+AGG | + | chr3.1:85681921-85681940 | MS.gene067143:CDS | 25.0% |
| ! | AGTTAAAGGATTCTCAAATT+TGG | + | chr3.1:85681935-85681954 | MS.gene067143:CDS | 25.0% |
| ! | ATAGGATATATACAATGTGA+TGG | + | chr3.1:85682548-85682567 | MS.gene067143:intron | 25.0% |
| ! | CAAAAACATAGTTGAATGAT+AGG | + | chr3.1:85682530-85682549 | MS.gene067143:intron | 25.0% |
| ! | CTAAGTTAAATTGTAGATAG+TGG | - | chr3.1:85683487-85683506 | None:intergenic | 25.0% |
| ! | CTGTAAAATGGATAACTAAT+CGG | - | chr3.1:85681353-85681372 | None:intergenic | 25.0% |
| ! | GTACAAAAATAGGATTACTT+TGG | - | chr3.1:85682239-85682258 | None:intergenic | 25.0% |
| ! | TAAAATGTACCAATTGAACT+TGG | + | chr3.1:85680946-85680965 | MS.gene067143:intron | 25.0% |
| ! | TAATACATACACAAAAGAAG+AGG | + | chr3.1:85683244-85683263 | MS.gene067143:CDS | 25.0% |
| ! | TAGATGAGAATTCTTTGATA+AGG | - | chr3.1:85682498-85682517 | None:intergenic | 25.0% |
| ! | TCCAAATAGTGCTTATAAAT+AGG | + | chr3.1:85684456-85684475 | MS.gene067143:intron | 25.0% |
| ! | TCCTATTTATAAGCACTATT+TGG | - | chr3.1:85684460-85684479 | None:intergenic | 25.0% |
| ! | TGAGAAATATAAACATGAGA+AGG | + | chr3.1:85684154-85684173 | MS.gene067143:CDS | 25.0% |
| ! | TGTCAAAGATGCTTATAAAA+AGG | - | chr3.1:85684264-85684283 | None:intergenic | 25.0% |
| ! | TTGATCTATTATTGTCTTTC+AGG | + | chr3.1:85683412-85683431 | MS.gene067143:intron | 25.0% |
| !! | AACTTTGTTGTATATATCAG+GGG | - | chr3.1:85681971-85681990 | None:intergenic | 25.0% |
| !! | ATGAATTTGGTGACAAAATT+GGG | - | chr3.1:85680638-85680657 | None:intergenic | 25.0% |
| !! | CATAAATATGATTTGTGAGA+AGG | + | chr3.1:85681870-85681889 | MS.gene067143:CDS | 25.0% |
| !! | GAACTTTGTTGTATATATCA+GGG | - | chr3.1:85681972-85681991 | None:intergenic | 25.0% |
| !! | TAAAGAGAAAAGTAGCATTT+TGG | - | chr3.1:85683022-85683041 | None:intergenic | 25.0% |
| !! | TAATGAGTTGGACTAAAATA+TGG | + | chr3.1:85680728-85680747 | MS.gene067143:intron | 25.0% |
| !! | TCTTTTTGAACTATGAACTA+AGG | + | chr3.1:85682913-85682932 | MS.gene067143:intron | 25.0% |
| !! | TGTTAAACAATCCAATTTTC+AGG | + | chr3.1:85680605-85680624 | MS.gene067143:CDS | 25.0% |
| !! | TTTTCAATAAAGCTATGGAT+AGG | - | chr3.1:85684748-85684767 | None:intergenic | 25.0% |
| !!! | CAACTATGTTTTTGATTGAA+AGG | - | chr3.1:85682524-85682543 | None:intergenic | 25.0% |
| !!! | TGTTTTTTCCCAATATCATT+CGG | + | chr3.1:85683133-85683152 | MS.gene067143:intron | 25.0% |
| !!! | TTAGCTTTGTGTTTTTCTTT+TGG | - | chr3.1:85681390-85681409 | None:intergenic | 25.0% |
| AAAGACATCAACCAATTACA+TGG | + | chr3.1:85682336-85682355 | MS.gene067143:intron | 30.0% | |
| AACATTGGTCAACTGAAAAA+AGG | - | chr3.1:85684200-85684219 | None:intergenic | 30.0% | |
| AAGAATAGAGCAGAATCATT+AGG | + | chr3.1:85682260-85682279 | MS.gene067143:intron | 30.0% | |
| AAGATTGTCCAATAGTTAAG+AGG | + | chr3.1:85681202-85681221 | MS.gene067143:intron | 30.0% | |
| AATAGATTTGCCTTCAAAGT+TGG | + | chr3.1:85680983-85681002 | MS.gene067143:intron | 30.0% | |
| ACTATGAACTAAGGATATCT+AGG | + | chr3.1:85682922-85682941 | MS.gene067143:intron | 30.0% | |
| AGAATTGTCTACCATAAAGA+TGG | + | chr3.1:85681471-85681490 | MS.gene067143:CDS | 30.0% | |
| AGACAACATGACAGTAATTA+TGG | - | chr3.1:85681833-85681852 | None:intergenic | 30.0% | |
| AGGTCTTCTTCCTAATTATA+TGG | - | chr3.1:85680683-85680702 | None:intergenic | 30.0% | |
| ATAGATTTGCCTTCAAAGTT+GGG | + | chr3.1:85680984-85681003 | MS.gene067143:intron | 30.0% | |
| ATCTTAGACCGAATGATATT+GGG | - | chr3.1:85683144-85683163 | None:intergenic | 30.0% | |
| CAAAAGATGTTTCCTCTAAA+GGG | - | chr3.1:85684684-85684703 | None:intergenic | 30.0% | |
| CACTCAATAATTGAGAATGT+TGG | - | chr3.1:85684531-85684550 | None:intergenic | 30.0% | |
| GATTGATCTATCTAGGTAAT+TGG | + | chr3.1:85680888-85680907 | MS.gene067143:intron | 30.0% | |
| GGTGAAATATCTTAGAAGTT+TGG | + | chr3.1:85681804-85681823 | MS.gene067143:intron | 30.0% | |
| GGTTATAGTTGCATTTGAAA+TGG | + | chr3.1:85682597-85682616 | MS.gene067143:intron | 30.0% | |
| GTTGTTATCACCATATCATT+AGG | + | chr3.1:85680826-85680845 | MS.gene067143:intron | 30.0% | |
| TAACTATCACCAAATGCATT+CGG | - | chr3.1:85683080-85683099 | None:intergenic | 30.0% | |
| TACAACTCTTTATGATGATC+AGG | + | chr3.1:85682576-85682595 | MS.gene067143:intron | 30.0% | |
| TAGGAACAGAGATAGTATAT+AGG | + | chr3.1:85684475-85684494 | MS.gene067143:intron | 30.0% | |
| TATATTTCTCACGTATAGCA+TGG | - | chr3.1:85684145-85684164 | None:intergenic | 30.0% | |
| TCAATGTAAGCAAGTATTCT+AGG | + | chr3.1:85682139-85682158 | MS.gene067143:intron | 30.0% | |
| TCATTTAATCCGAATGCATT+TGG | + | chr3.1:85683068-85683087 | MS.gene067143:intron | 30.0% | |
| TGAAAGATGACTTACATTCA+GGG | + | chr3.1:85684420-85684439 | MS.gene067143:intron | 30.0% | |
| TGACATTGCAATTTAGCATA+TGG | - | chr3.1:85681721-85681740 | None:intergenic | 30.0% | |
| TGATAAGGTTATGGACAAAA+AGG | - | chr3.1:85682483-85682502 | None:intergenic | 30.0% | |
| TGGGATTTATACCTGAAAAT+TGG | - | chr3.1:85680619-85680638 | None:intergenic | 30.0% | |
| TGTTTAACACGTTTATCATG+TGG | - | chr3.1:85680594-85680613 | None:intergenic | 30.0% | |
| TTGAAAGATGACTTACATTC+AGG | + | chr3.1:85684419-85684438 | MS.gene067143:intron | 30.0% | |
| ! | AATAAACCTTTGTTTGGACT+TGG | - | chr3.1:85681643-85681662 | None:intergenic | 30.0% |
| ! | AATATGATTTGTGAGAAGGT+AGG | + | chr3.1:85681874-85681893 | MS.gene067143:CDS | 30.0% |
| ! | CATGAATTTGGTGACAAAAT+TGG | - | chr3.1:85680639-85680658 | None:intergenic | 30.0% |
| ! | CGAACTTTGTTGTATATATC+AGG | - | chr3.1:85681973-85681992 | None:intergenic | 30.0% |
| ! | CTTTTTATCGATGTCTACAA+AGG | - | chr3.1:85681917-85681936 | None:intergenic | 30.0% |
| ! | TACATACCTGAGAAATGTTT+TGG | - | chr3.1:85683330-85683349 | None:intergenic | 30.0% |
| ! | TTTCTTTTGGTAAACTCCTT+TGG | - | chr3.1:85681377-85681396 | None:intergenic | 30.0% |
| !! | AAGCTATAAATCCTAGCTTT+TGG | - | chr3.1:85683635-85683654 | None:intergenic | 30.0% |
| !! | ATGGATTTTGACATGTTTGA+TGG | + | chr3.1:85683558-85683577 | MS.gene067143:intron | 30.0% |
| !! | CGATTAGTTATCCATTTTAC+AGG | + | chr3.1:85681351-85681370 | MS.gene067143:intron | 30.0% |
| !! | CTATGTTTTTGATTGAAAGG+CGG | - | chr3.1:85682521-85682540 | None:intergenic | 30.0% |
| !! | GACTAGTGGATTTAAAACAT+TGG | - | chr3.1:85684215-85684234 | None:intergenic | 30.0% |
| !! | TTTTGACTCTACCATCTTTA+TGG | - | chr3.1:85681485-85681504 | None:intergenic | 30.0% |
| !!! | AAGCTTTTTTCAACTAAGTG+GGG | - | chr3.1:85680802-85680821 | None:intergenic | 30.0% |
| !!! | ACTATTTTTTGTAATGGTCC+TGG | + | chr3.1:85682841-85682860 | MS.gene067143:intron | 30.0% |
| !!! | CAAGCTTTTTTCAACTAAGT+GGG | - | chr3.1:85680803-85680822 | None:intergenic | 30.0% |
| AACATGGTCACTTATGTTGT+TGG | - | chr3.1:85681560-85681579 | None:intergenic | 35.0% | |
| AATGAATTACGGACAAACCT+CGG | - | chr3.1:85682001-85682020 | None:intergenic | 35.0% | |
| AATGTCATAAGATTGCCCTT+TGG | + | chr3.1:85681734-85681753 | MS.gene067143:intron | 35.0% | |
| ACAAGAGGATGTTAAAGAGA+AGG | + | chr3.1:85681441-85681460 | MS.gene067143:CDS | 35.0% | |
| ACATGCAGATTGATCTATCT+AGG | + | chr3.1:85680881-85680900 | MS.gene067143:intron | 35.0% | |
| ACATTCTTGCATTGAAAGTG+TGG | - | chr3.1:85681593-85681612 | None:intergenic | 35.0% | |
| ACTCAGAATTACCAGATCAA+GGG | + | chr3.1:85680407-85680426 | MS.gene067143:CDS | 35.0% | |
| ACTTACATACCCAACTTTGA+AGG | - | chr3.1:85680996-85681015 | None:intergenic | 35.0% | |
| AGAATTCTAACTCTGAGCAA+CGG | - | chr3.1:85682880-85682899 | None:intergenic | 35.0% | |
| AGAGGTAGTAAAAATGGAGA+AGG | + | chr3.1:85683262-85683281 | MS.gene067143:CDS | 35.0% | |
| AGTGATTCTAACCAAAAGCT+AGG | + | chr3.1:85683621-85683640 | MS.gene067143:intron | 35.0% | |
| AGTTGTATTGTACCCTTTAG+AGG | + | chr3.1:85684669-85684688 | MS.gene067143:intron | 35.0% | |
| ATATATGCAGACTACAACTC+TGG | + | chr3.1:85684031-85684050 | MS.gene067143:intron | 35.0% | |
| ATTATGGCGTAATTTGATCC+TGG | + | chr3.1:85680769-85680788 | MS.gene067143:intron | 35.0% | |
| CAAGTTTGATTCAGAAACAC+AGG | + | chr3.1:85682774-85682793 | MS.gene067143:CDS | 35.0% | |
| CATCTTAGACCGAATGATAT+TGG | - | chr3.1:85683145-85683164 | None:intergenic | 35.0% | |
| CCACTTAGTTGAAAAAAGCT+TGG | + | chr3.1:85680801-85680820 | MS.gene067143:intron | 35.0% | |
| CTAACCTACTCTCTTTACTA+GGG | - | chr3.1:85681178-85681197 | None:intergenic | 35.0% | |
| GATCTGCAACTTAATACCAA+AGG | + | chr3.1:85684110-85684129 | MS.gene067143:CDS | 35.0% | |
| GCAAAAGATGTTTCCTCTAA+AGG | - | chr3.1:85684685-85684704 | None:intergenic | 35.0% | |
| TAGTCAACATTTCATACCCA+TGG | - | chr3.1:85683952-85683971 | None:intergenic | 35.0% | |
| TATTCCTCAGAAACCTGAAA+AGG | - | chr3.1:85682695-85682714 | None:intergenic | 35.0% | |
| TCAGAAACCTGAAAAGGAAT+AGG | - | chr3.1:85682689-85682708 | None:intergenic | 35.0% | |
| TCTAACCTACTCTCTTTACT+AGG | - | chr3.1:85681179-85681198 | None:intergenic | 35.0% | |
| TCTCTTCACCTCTTAACTAT+TGG | - | chr3.1:85681213-85681232 | None:intergenic | 35.0% | |
| TCTGATTGAGGTTCATAAAC+CGG | + | chr3.1:85684706-85684725 | MS.gene067143:intron | 35.0% | |
| TGCAAAATGAAATATGCTCC+TGG | - | chr3.1:85682169-85682188 | None:intergenic | 35.0% | |
| TTACTGTGAACCTCATTGAT+CGG | + | chr3.1:85682741-85682760 | MS.gene067143:CDS | 35.0% | |
| TTGGACATACAATGTTCAGT+TGG | - | chr3.1:85681541-85681560 | None:intergenic | 35.0% | |
| TTGGTTAGAATCACTTCTTG+AGG | - | chr3.1:85683616-85683635 | None:intergenic | 35.0% | |
| TTGTAGAATCTCATCTTAGG+TGG | + | chr3.1:85681128-85681147 | MS.gene067143:intron | 35.0% | |
| ! | ACATCTTTTGCATCTGATTG+AGG | + | chr3.1:85684694-85684713 | MS.gene067143:intron | 35.0% |
| ! | AGATGCACTTCTTTTCTTCA+TGG | + | chr3.1:85683160-85683179 | MS.gene067143:intron | 35.0% |
| ! | CTCAGAAGAAACAACCTTTT+TGG | - | chr3.1:85680487-85680506 | None:intergenic | 35.0% |
| ! | TCTAAAGGGTACAATACAAC+TGG | - | chr3.1:85684670-85684689 | None:intergenic | 35.0% |
| ! | TTACCATCAAGCTTTTGTTG+TGG | + | chr3.1:85682648-85682667 | MS.gene067143:intron | 35.0% |
| ! | TTAGTATGTGTTTGGTTTCG+TGG | + | chr3.1:85683503-85683522 | MS.gene067143:intron | 35.0% |
| ! | TTATCCATTTTACAGGCCAA+AGG | + | chr3.1:85681358-85681377 | MS.gene067143:intron | 35.0% |
| ! | TTGTGCTGATGAAACTTCAA+TGG | - | chr3.1:85681425-85681444 | None:intergenic | 35.0% |
| !! | AAGTGGTTCTAGACACAAAA+TGG | + | chr3.1:85683539-85683558 | MS.gene067143:intron | 35.0% |
| !! | AATTCTGATTGATTGGCTTG+TGG | + | chr3.1:85682396-85682415 | MS.gene067143:CDS | 35.0% |
| !! | AGGACAGCATATTATTTTGC+CGG | - | chr3.1:85684728-85684747 | None:intergenic | 35.0% |
| !! | CTGGATTATTTTATGCTGAC+AGG | + | chr3.1:85683740-85683759 | MS.gene067143:intron | 35.0% |
| !! | TTTGTGTCTAGAACCACTTT+TGG | - | chr3.1:85683538-85683557 | None:intergenic | 35.0% |
| !! | TTTTGTTGTGGCTTTGCTAA+AGG | + | chr3.1:85682660-85682679 | MS.gene067143:intron | 35.0% |
| !!! | CCAAGCTTTTTTCAACTAAG+TGG | - | chr3.1:85680804-85680823 | None:intergenic | 35.0% |
| !!! | CTGAGAAATGTTTTGGTTGT+GGG | - | chr3.1:85683323-85683342 | None:intergenic | 35.0% |
| !!! | TATTCCTTTTCAGGTTTCTG+AGG | + | chr3.1:85682688-85682707 | MS.gene067143:intron | 35.0% |
| !!! | TTTTTTCAACTAAGTGGGGT+CGG | - | chr3.1:85680798-85680817 | None:intergenic | 35.0% |
| AAAACCAGTTGTTCTTGCAC+TGG | + | chr3.1:85684085-85684104 | MS.gene067143:CDS | 40.0% | |
| AACCAAAGTTACTGCAGCAA+TGG | - | chr3.1:85681512-85681531 | None:intergenic | 40.0% | |
| AACGGGAACTTATGTTAACC+AGG | - | chr3.1:85682862-85682881 | None:intergenic | 40.0% | |
| AACTCCTTTGGCCTGTAAAA+TGG | - | chr3.1:85681365-85681384 | None:intergenic | 40.0% | |
| AAGAGCAACAGCTTCCAAAA+AGG | + | chr3.1:85680470-85680489 | MS.gene067143:CDS | 40.0% | |
| AAGCAAAATTCTTCCACTCG+AGG | - | chr3.1:85683215-85683234 | None:intergenic | 40.0% | |
| AAGCCACAACAAAAGCTTGA+TGG | - | chr3.1:85682654-85682673 | None:intergenic | 40.0% | |
| AAGCCACTAACTCACTAGAA+AGG | + | chr3.1:85681783-85681802 | MS.gene067143:intron | 40.0% | |
| AAGTCAGCTGAAATTGCTAG+AGG | + | chr3.1:85681012-85681031 | MS.gene067143:intron | 40.0% | |
| AATTACCAGATCAAGGGCAA+AGG | + | chr3.1:85680413-85680432 | MS.gene067143:CDS | 40.0% | |
| ACAGTAAACTGAGGATCGAA+AGG | - | chr3.1:85682981-85683000 | None:intergenic | 40.0% | |
| AGCAGCACAATCTTCTTACA+AGG | + | chr3.1:85683446-85683465 | MS.gene067143:CDS | 40.0% | |
| AGTCAGCTGAAATTGCTAGA+GGG | + | chr3.1:85681013-85681032 | MS.gene067143:intron | 40.0% | |
| ATCATCTCCACAGTAAACTG+AGG | - | chr3.1:85682990-85683009 | None:intergenic | 40.0% | |
| ATGCAAGAATGTGTGAACTC+TGG | + | chr3.1:85681601-85681620 | MS.gene067143:CDS | 40.0% | |
| ATGTTCCTCACCGTAAAAGA+AGG | + | chr3.1:85680532-85680551 | MS.gene067143:CDS | 40.0% | |
| CACTCAGAATTACCAGATCA+AGG | + | chr3.1:85680406-85680425 | MS.gene067143:CDS | 40.0% | |
| CACTGAAAATGCTACTCCAT+CGG | + | chr3.1:85684236-85684255 | MS.gene067143:intron | 40.0% | |
| CAGATAACTGAAAACGCAGA+AGG | - | chr3.1:85683298-85683317 | None:intergenic | 40.0% | |
| CATTGCAAAATCAAACACGC+TGG | + | chr3.1:85683721-85683740 | MS.gene067143:intron | 40.0% | |
| CCACAACCAAAACATTTCTC+AGG | + | chr3.1:85683321-85683340 | MS.gene067143:CDS | 40.0% | |
| CTGCAACTTCTCCATGTAAT+TGG | - | chr3.1:85682350-85682369 | None:intergenic | 40.0% | |
| CTTGATCTGGTAATTCTGAG+TGG | - | chr3.1:85680408-85680427 | None:intergenic | 40.0% | |
| GAATTCTAACTCTGAGCAAC+GGG | - | chr3.1:85682879-85682898 | None:intergenic | 40.0% | |
| GATCAATGAGGTTCACAGTA+AGG | - | chr3.1:85682742-85682761 | None:intergenic | 40.0% | |
| GTGGTAGAGATAACCAAAAG+TGG | + | chr3.1:85683522-85683541 | MS.gene067143:intron | 40.0% | |
| TATCGATGTCTACAAAGGTC+AGG | - | chr3.1:85681912-85681931 | None:intergenic | 40.0% | |
| TGAAGTTTCATCAGCACAAG+AGG | + | chr3.1:85681426-85681445 | MS.gene067143:CDS | 40.0% | |
| TGCGTGGAATTCTGATTGAT+TGG | + | chr3.1:85682389-85682408 | MS.gene067143:CDS | 40.0% | |
| TGCTTCATGTGACAGTTCAA+TGG | + | chr3.1:85684803-85684822 | MS.gene067143:intron | 40.0% | |
| TGTTCCTCACCGTAAAAGAA+GGG | + | chr3.1:85680533-85680552 | MS.gene067143:CDS | 40.0% | |
| TTGAGAGAAACCGATCAATG+AGG | - | chr3.1:85682754-85682773 | None:intergenic | 40.0% | |
| TTTCGATCCTCAGTTTACTG+TGG | + | chr3.1:85682980-85682999 | MS.gene067143:intron | 40.0% | |
| TTTGCTCGACCAAGTTCAAT+TGG | - | chr3.1:85680958-85680977 | None:intergenic | 40.0% | |
| ! | AGATCAAGGGCAAAGGTTTT+GGG | + | chr3.1:85680420-85680439 | MS.gene067143:CDS | 40.0% |
| ! | AGCATTTTCAGTGTGACTAG+TGG | - | chr3.1:85684229-85684248 | None:intergenic | 40.0% |
| ! | GCTCTGCTAAATAATTTGCC+AGG | - | chr3.1:85683831-85683850 | None:intergenic | 40.0% |
| ! | GGTTTCTGAGGAATATAAGC+TGG | + | chr3.1:85682700-85682719 | MS.gene067143:intron | 40.0% |
| ! | TCACCTTTCTAGTGAGTTAG+TGG | - | chr3.1:85681789-85681808 | None:intergenic | 40.0% |
| ! | TGTAAGAAGATTGTGCTGCT+TGG | - | chr3.1:85683446-85683465 | None:intergenic | 40.0% |
| ! | TTCCCTTCATTTTCCGAAGA+GGG | - | chr3.1:85680450-85680469 | None:intergenic | 40.0% |
| ! | TTTCCCTTCATTTTCCGAAG+AGG | - | chr3.1:85680451-85680470 | None:intergenic | 40.0% |
| !! | AAGGTGTCCTATTCCTTTTC+AGG | + | chr3.1:85682679-85682698 | MS.gene067143:intron | 40.0% |
| !! | ACAGTAAGGTAAAGAGTGTC+TGG | - | chr3.1:85682728-85682747 | None:intergenic | 40.0% |
| !! | TAGCTCTGAAGCTTTGTAGT+TGG | - | chr3.1:85684066-85684085 | None:intergenic | 40.0% |
| !! | TGCTTATAAAAAGGCACCGA+TGG | - | chr3.1:85684255-85684274 | None:intergenic | 40.0% |
| !! | TGGAGAAGTACTTGTACACA+CGG | - | chr3.1:85684650-85684669 | None:intergenic | 40.0% |
| !!! | CCTGAGAAATGTTTTGGTTG+TGG | - | chr3.1:85683324-85683343 | None:intergenic | 40.0% |
| ACAGTTTCTACCTTCTCGTG+TGG | + | chr3.1:85683876-85683895 | MS.gene067143:CDS | 45.0% | |
| ACCTCTCCAAGTCCAAACAA+AGG | + | chr3.1:85681634-85681653 | MS.gene067143:CDS | 45.0% | |
| AGCATGGAGAGAACAACCTT+TGG | - | chr3.1:85684129-85684148 | None:intergenic | 45.0% | |
| AGGAATTCCAGTTCAGCAAG+AGG | - | chr3.1:85683811-85683830 | None:intergenic | 45.0% | |
| ATCAGAATTCCACGCATGCT+TGG | - | chr3.1:85682385-85682404 | None:intergenic | 45.0% | |
| CAAAACCTTTGCCCTTGATC+TGG | - | chr3.1:85680421-85680440 | None:intergenic | 45.0% | |
| CAACCACTCAGAACATCCAT+GGG | + | chr3.1:85683933-85683952 | MS.gene067143:CDS | 45.0% | |
| CACCATTGCTGCAGTAACTT+TGG | + | chr3.1:85681507-85681526 | MS.gene067143:CDS | 45.0% | |
| CATGTGACAGTTCAATGGTG+TGG | + | chr3.1:85684808-85684827 | MS.gene067143:intron | 45.0% | |
| GACCCTCTTCGGAAAATGAA+GGG | + | chr3.1:85680445-85680464 | MS.gene067143:CDS | 45.0% | |
| GAGACCCTAGTAAAGAGAGT+AGG | + | chr3.1:85681171-85681190 | MS.gene067143:intron | 45.0% | |
| GATATTTCTCCAAGCATGCG+TGG | + | chr3.1:85682373-85682392 | MS.gene067143:CDS | 45.0% | |
| GGCAAAACTGTCTCCAAAAC+CGG | + | chr3.1:85684829-85684848 | MS.gene067143:CDS | 45.0% | |
| GTCAGCTGAAATTGCTAGAG+GGG | + | chr3.1:85681014-85681033 | MS.gene067143:intron | 45.0% | |
| GTGTGGTGTCTGTCATAACA+TGG | - | chr3.1:85681576-85681595 | None:intergenic | 45.0% | |
| TCAACCACTCAGAACATCCA+TGG | + | chr3.1:85683932-85683951 | MS.gene067143:CDS | 45.0% | |
| TCTTCCAGTGCAAGAACAAC+TGG | - | chr3.1:85684092-85684111 | None:intergenic | 45.0% | |
| TCTTGCTGAACTGGAATTCC+TGG | + | chr3.1:85683810-85683829 | MS.gene067143:CDS | 45.0% | |
| TGCAAGTAACACCAAGCAAC+TGG | - | chr3.1:85682802-85682821 | None:intergenic | 45.0% | |
| TTAGGTGGTAGAGACATGTG+TGG | + | chr3.1:85681143-85681162 | MS.gene067143:intron | 45.0% | |
| ! | ACCTTTGTTTGGACTTGGAG+AGG | - | chr3.1:85681638-85681657 | None:intergenic | 45.0% |
| ! | ATACCCATGGATGTTCTGAG+TGG | - | chr3.1:85683939-85683958 | None:intergenic | 45.0% |
| ! | ATGGATGTTCTGAGTGGTTG+AGG | - | chr3.1:85683933-85683952 | None:intergenic | 45.0% |
| ! | CAGATCAAGGGCAAAGGTTT+TGG | + | chr3.1:85680419-85680438 | MS.gene067143:CDS | 45.0% |
| ! | CTTTTACGGTGAGGAACATC+AGG | - | chr3.1:85680531-85680550 | None:intergenic | 45.0% |
| ! | TAAGCCCTGCCCTTCTTTTA+CGG | - | chr3.1:85680545-85680564 | None:intergenic | 45.0% |
| ! | TGGATGTTCTGAGTGGTTGA+GGG | - | chr3.1:85683932-85683951 | None:intergenic | 45.0% |
| !! | GCAAGTATTCTAGGATAGCC+AGG | + | chr3.1:85682148-85682167 | MS.gene067143:intron | 45.0% |
| !! | TCTGATTGATTGGCTTGTGG+AGG | + | chr3.1:85682399-85682418 | MS.gene067143:CDS | 45.0% |
| !! | ATTATTATTACTTTATAATA+GGG | + | chr3.1:85682092-85682111 | MS.gene067143:intron | 5.0% |
| !! | TATTATTATTACTTTATAAT+AGG | + | chr3.1:85682091-85682110 | MS.gene067143:intron | 5.0% |
| AAACACAGGCTCCAGTTGCT+TGG | + | chr3.1:85682788-85682807 | MS.gene067143:CDS | 50.0% | |
| ACAGGTTCCTCTTGCTGAAC+TGG | + | chr3.1:85683801-85683820 | MS.gene067143:intron | 50.0% | |
| CAACAAAGTTCGAGTCACCG+AGG | + | chr3.1:85681981-85682000 | MS.gene067143:CDS | 50.0% | |
| CTCACCGTAAAAGAAGGGCA+GGG | + | chr3.1:85680538-85680557 | MS.gene067143:CDS | 50.0% | |
| CTGCTGTATTCCTTGCCAGA+TGG | + | chr3.1:85683905-85683924 | MS.gene067143:CDS | 50.0% | |
| GAGTGGACGCTCTTCATCTT+TGG | - | chr3.1:85680391-85680410 | None:intergenic | 50.0% | |
| GGACCCTCTTCGGAAAATGA+AGG | + | chr3.1:85680444-85680463 | MS.gene067143:CDS | 50.0% | |
| TTGTGAGAAGGTAGGAGCCT+CGG | + | chr3.1:85681882-85681901 | MS.gene067143:CDS | 50.0% | |
| !!! | AACAGTGACTGCACCGGTTT+TGG | - | chr3.1:85684845-85684864 | None:intergenic | 50.0% |
| !!! | TCAAGGGCAAAGGTTTTGGG+AGG | + | chr3.1:85680423-85680442 | MS.gene067143:CDS | 50.0% |
| AGAGATGTGTGCTCCTCGAG+TGG | + | chr3.1:85683199-85683218 | MS.gene067143:CDS | 55.0% | |
| CCTCACCGTAAAAGAAGGGC+AGG | + | chr3.1:85680537-85680556 | MS.gene067143:CDS | 55.0% | |
| GCTTGTGGAGGTCAGTCTTG+TGG | + | chr3.1:85682411-85682430 | MS.gene067143:intron | 55.0% | |
| TACAAAGGTCAGGCGATCCG+AGG | - | chr3.1:85681902-85681921 | None:intergenic | 55.0% | |
| TGAGTGGTTGAGGGTCCATC+TGG | - | chr3.1:85683923-85683942 | None:intergenic | 55.0% | |
| ! | CCTGCCCTTCTTTTACGGTG+AGG | - | chr3.1:85680540-85680559 | None:intergenic | 55.0% |
| ! | GGAGGTCAGTCTTGTGGCAT+TGG | + | chr3.1:85682417-85682436 | MS.gene067143:intron | 55.0% |
| !!! | GGTTTTGGGAGGACCCTCTT+CGG | + | chr3.1:85680434-85680453 | MS.gene067143:CDS | 55.0% |
| ACCGGTGCAGTCACTGTTCC+AGG | + | chr3.1:85684847-85684866 | MS.gene067143:CDS | 60.0% | |
| ACTAAGTGGGGTCGGCTACC+AGG | - | chr3.1:85680790-85680809 | None:intergenic | 60.0% | |
| GCAGAAGCAGCCACACGAGA+AGG | - | chr3.1:85683889-85683908 | None:intergenic | 60.0% | |
| GCCTGGAACAGTGACTGCAC+CGG | - | chr3.1:85684851-85684870 | None:intergenic | 60.0% | |
| GGTTGAGGGTCCATCTGGCA+AGG | - | chr3.1:85683918-85683937 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 85680360 | 85684880 | 85680360 | ID=MS.gene067143 |
| chr3.1 | mRNA | 85680360 | 85684880 | 85680360 | ID=MS.gene067143.t1;Parent=MS.gene067143 |
| chr3.1 | exon | 85680360 | 85680626 | 85680360 | ID=MS.gene067143.t1.exon1;Parent=MS.gene067143.t1 |
| chr3.1 | CDS | 85680360 | 85680626 | 85680360 | ID=cds.MS.gene067143.t1;Parent=MS.gene067143.t1 |
| chr3.1 | exon | 85681373 | 85681655 | 85681373 | ID=MS.gene067143.t1.exon2;Parent=MS.gene067143.t1 |
| chr3.1 | CDS | 85681373 | 85681655 | 85681373 | ID=cds.MS.gene067143.t1;Parent=MS.gene067143.t1 |
| chr3.1 | exon | 85681869 | 85682002 | 85681869 | ID=MS.gene067143.t1.exon3;Parent=MS.gene067143.t1 |
| chr3.1 | CDS | 85681869 | 85682002 | 85681869 | ID=cds.MS.gene067143.t1;Parent=MS.gene067143.t1 |
| chr3.1 | exon | 85682340 | 85682420 | 85682340 | ID=MS.gene067143.t1.exon4;Parent=MS.gene067143.t1 |
| chr3.1 | CDS | 85682340 | 85682420 | 85682340 | ID=cds.MS.gene067143.t1;Parent=MS.gene067143.t1 |
| chr3.1 | exon | 85682701 | 85682834 | 85682701 | ID=MS.gene067143.t1.exon5;Parent=MS.gene067143.t1 |
| chr3.1 | CDS | 85682701 | 85682834 | 85682701 | ID=cds.MS.gene067143.t1;Parent=MS.gene067143.t1 |
| chr3.1 | exon | 85683190 | 85683342 | 85683190 | ID=MS.gene067143.t1.exon6;Parent=MS.gene067143.t1 |
| chr3.1 | CDS | 85683190 | 85683342 | 85683190 | ID=cds.MS.gene067143.t1;Parent=MS.gene067143.t1 |
| chr3.1 | exon | 85683434 | 85683467 | 85683434 | ID=MS.gene067143.t1.exon7;Parent=MS.gene067143.t1 |
| chr3.1 | CDS | 85683434 | 85683467 | 85683434 | ID=cds.MS.gene067143.t1;Parent=MS.gene067143.t1 |
| chr3.1 | exon | 85683805 | 85683954 | 85683805 | ID=MS.gene067143.t1.exon8;Parent=MS.gene067143.t1 |
| chr3.1 | CDS | 85683805 | 85683954 | 85683805 | ID=cds.MS.gene067143.t1;Parent=MS.gene067143.t1 |
| chr3.1 | exon | 85684041 | 85684175 | 85684041 | ID=MS.gene067143.t1.exon9;Parent=MS.gene067143.t1 |
| chr3.1 | CDS | 85684041 | 85684175 | 85684041 | ID=cds.MS.gene067143.t1;Parent=MS.gene067143.t1 |
| chr3.1 | exon | 85684818 | 85684880 | 85684818 | ID=MS.gene067143.t1.exon10;Parent=MS.gene067143.t1 |
| chr3.1 | CDS | 85684818 | 85684880 | 85684818 | ID=cds.MS.gene067143.t1;Parent=MS.gene067143.t1 |
| Gene Sequence |
| Protein sequence |
