Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29405.t1 | RHN66664.1 | 88.8 | 98 | 3 | 1 | 1 | 90 | 25 | 122 | 2.80E-38 | 167.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29405.t1 | Q06445 | 69.1 | 97 | 22 | 1 | 1 | 89 | 1 | 97 | 4.5e-29 | 128.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29405.t1 | I3S5L6 | 88.8 | 98 | 3 | 1 | 1 | 90 | 1 | 98 | 2.0e-38 | 167.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene29405 | 0.836249 | 1.05E-56 | -1.69E-46 |
| MS.gene049378 | MS.gene29405 | 0.839367 | 1.65E-57 | -1.69E-46 |
| MS.gene049382 | MS.gene29405 | 0.802279 | 6.05E-49 | -1.69E-46 |
| MS.gene049424 | MS.gene29405 | 0.817534 | 3.14E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene29405 | 0.800548 | 1.37E-48 | -1.69E-46 |
| MS.gene050442 | MS.gene29405 | 0.827778 | 1.30E-54 | -1.69E-46 |
| MS.gene050680 | MS.gene29405 | 0.835533 | 1.59E-56 | -1.69E-46 |
| MS.gene050719 | MS.gene29405 | 0.806618 | 7.54E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene29405 | 0.807534 | 4.82E-50 | -1.69E-46 |
| MS.gene050724 | MS.gene29405 | 0.824529 | 7.68E-54 | -1.69E-46 |
| MS.gene050750 | MS.gene29405 | 0.815015 | 1.15E-51 | -1.69E-46 |
| MS.gene050762 | MS.gene29405 | 0.837968 | 3.80E-57 | -1.69E-46 |
| MS.gene050763 | MS.gene29405 | 0.838978 | 2.08E-57 | -1.69E-46 |
| MS.gene050807 | MS.gene29405 | 0.837043 | 6.56E-57 | -1.69E-46 |
| MS.gene050808 | MS.gene29405 | 0.813704 | 2.24E-51 | -1.69E-46 |
| MS.gene050815 | MS.gene29405 | 0.817376 | 3.41E-52 | -1.69E-46 |
| MS.gene050826 | MS.gene29405 | 0.866757 | 2.26E-65 | -1.69E-46 |
| MS.gene050953 | MS.gene29405 | 0.825182 | 5.39E-54 | -1.69E-46 |
| MS.gene050987 | MS.gene29405 | 0.80969 | 1.67E-50 | -1.69E-46 |
| MS.gene051180 | MS.gene29405 | 0.803225 | 3.86E-49 | -1.69E-46 |
| MS.gene051243 | MS.gene29405 | 0.833643 | 4.74E-56 | -1.69E-46 |
| MS.gene051265 | MS.gene29405 | 0.802313 | 5.95E-49 | -1.69E-46 |
| MS.gene051452 | MS.gene29405 | 0.803387 | 3.57E-49 | -1.69E-46 |
| MS.gene051535 | MS.gene29405 | 0.809552 | 1.79E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene29405 | 0.845511 | 3.88E-59 | -1.69E-46 |
| MS.gene052302 | MS.gene29405 | 0.802053 | 6.73E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene29405 | 0.808013 | 3.82E-50 | -1.69E-46 |
| MS.gene052426 | MS.gene29405 | 0.834352 | 3.15E-56 | -1.69E-46 |
| MS.gene052677 | MS.gene29405 | 0.801751 | 7.77E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene29405 | 0.824133 | 9.52E-54 | -1.69E-46 |
| MS.gene053008 | MS.gene29405 | 0.82833 | 9.55E-55 | -1.69E-46 |
| MS.gene053166 | MS.gene29405 | 0.832088 | 1.15E-55 | -1.69E-46 |
| MS.gene053216 | MS.gene29405 | 0.816827 | 4.52E-52 | -1.69E-46 |
| MS.gene053494 | MS.gene29405 | 0.838899 | 2.19E-57 | -1.69E-46 |
| MS.gene05415 | MS.gene29405 | 0.806963 | 6.37E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene29405 | 0.80912 | 2.21E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene29405 | 0.854671 | 1.05E-61 | -1.69E-46 |
| MS.gene054405 | MS.gene29405 | 0.813515 | 2.46E-51 | -1.69E-46 |
| MS.gene054472 | MS.gene29405 | 0.845207 | 4.69E-59 | -1.69E-46 |
| MS.gene054542 | MS.gene29405 | 0.809114 | 2.22E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene29405 | 0.821771 | 3.38E-53 | -1.69E-46 |
| MS.gene054930 | MS.gene29405 | 0.844599 | 6.84E-59 | -1.69E-46 |
| MS.gene05510 | MS.gene29405 | 0.86462 | 1.07E-64 | -1.69E-46 |
| MS.gene055227 | MS.gene29405 | 0.82295 | 1.80E-53 | -1.69E-46 |
| MS.gene055230 | MS.gene29405 | 0.805064 | 1.60E-49 | -1.69E-46 |
| MS.gene055356 | MS.gene29405 | 0.823766 | 1.16E-53 | -1.69E-46 |
| MS.gene055358 | MS.gene29405 | 0.807889 | 4.05E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene29405 | 0.837111 | 6.30E-57 | -1.69E-46 |
| MS.gene055701 | MS.gene29405 | 0.845679 | 3.49E-59 | -1.69E-46 |
| MS.gene055818 | MS.gene29405 | 0.847883 | 8.72E-60 | -1.69E-46 |
| MS.gene055926 | MS.gene29405 | 0.813408 | 2.60E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene29405 | 0.82371 | 1.20E-53 | -1.69E-46 |
| MS.gene056069 | MS.gene29405 | -0.818386 | 2.01E-52 | -1.69E-46 |
| MS.gene056480 | MS.gene29405 | 0.830093 | 3.57E-55 | -1.69E-46 |
| MS.gene056506 | MS.gene29405 | 0.81299 | 3.21E-51 | -1.69E-46 |
| MS.gene056760 | MS.gene29405 | 0.818588 | 1.81E-52 | -1.69E-46 |
| MS.gene056873 | MS.gene29405 | 0.811108 | 8.26E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene29405 | 0.80429 | 2.32E-49 | -1.69E-46 |
| MS.gene057047 | MS.gene29405 | 0.81437 | 1.59E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene29405 | 0.803451 | 3.46E-49 | -1.69E-46 |
| MS.gene057194 | MS.gene29405 | 0.817402 | 3.36E-52 | -1.69E-46 |
| MS.gene057394 | MS.gene29405 | 0.829959 | 3.84E-55 | -1.69E-46 |
| MS.gene05761 | MS.gene29405 | 0.820861 | 5.48E-53 | -1.69E-46 |
| MS.gene057750 | MS.gene29405 | 0.817293 | 3.56E-52 | -1.69E-46 |
| MS.gene05795 | MS.gene29405 | 0.80174 | 7.81E-49 | -1.69E-46 |
| MS.gene058146 | MS.gene29405 | 0.835486 | 1.63E-56 | -1.69E-46 |
| MS.gene058399 | MS.gene29405 | 0.827982 | 1.16E-54 | -1.69E-46 |
| MS.gene058595 | MS.gene29405 | 0.839939 | 1.17E-57 | -1.69E-46 |
| MS.gene059128 | MS.gene29405 | 0.82612 | 3.23E-54 | -1.69E-46 |
| MS.gene059161 | MS.gene29405 | 0.825997 | 3.45E-54 | -1.69E-46 |
| MS.gene059713 | MS.gene29405 | 0.816348 | 5.79E-52 | -1.69E-46 |
| MS.gene059842 | MS.gene29405 | 0.805481 | 1.31E-49 | -1.69E-46 |
| MS.gene059952 | MS.gene29405 | 0.810035 | 1.41E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene29405 | 0.803389 | 3.57E-49 | -1.69E-46 |
| MS.gene060167 | MS.gene29405 | 0.821192 | 4.60E-53 | -1.69E-46 |
| MS.gene060322 | MS.gene29405 | 0.882459 | 1.02E-70 | -1.69E-46 |
| MS.gene060683 | MS.gene29405 | 0.857581 | 1.48E-62 | -1.69E-46 |
| MS.gene060685 | MS.gene29405 | 0.859363 | 4.36E-63 | -1.69E-46 |
| MS.gene060802 | MS.gene29405 | 0.825826 | 3.79E-54 | -1.69E-46 |
| MS.gene060803 | MS.gene29405 | 0.843564 | 1.30E-58 | -1.69E-46 |
| MS.gene060940 | MS.gene29405 | 0.814669 | 1.37E-51 | -1.69E-46 |
| MS.gene060942 | MS.gene29405 | 0.839498 | 1.53E-57 | -1.69E-46 |
| MS.gene060943 | MS.gene29405 | 0.82471 | 6.96E-54 | -1.69E-46 |
| MS.gene060998 | MS.gene29405 | 0.855351 | 6.69E-62 | -1.69E-46 |
| MS.gene061002 | MS.gene29405 | 0.831133 | 1.98E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29405.t1 | MTR_3g043750 | 88.776 | 98 | 3 | 1 | 1 | 90 | 1 | 98 | 3.84e-58 | 173 |
| MS.gene29405.t1 | MTR_8g041410 | 58.163 | 98 | 32 | 2 | 1 | 89 | 38 | 135 | 9.09e-32 | 111 |
| MS.gene29405.t1 | MTR_5g088770 | 56.000 | 100 | 33 | 2 | 1 | 89 | 1 | 100 | 1.04e-31 | 107 |
| MS.gene29405.t1 | MTR_3g451210 | 45.745 | 94 | 43 | 2 | 4 | 89 | 31 | 124 | 2.17e-24 | 89.7 |
| MS.gene29405.t1 | MTR_3g452280 | 45.745 | 94 | 43 | 2 | 4 | 89 | 31 | 124 | 2.17e-24 | 89.7 |
| MS.gene29405.t1 | MTR_4g133540 | 40.000 | 70 | 42 | 0 | 16 | 85 | 47 | 116 | 1.05e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29405.t1 | AT3G12490 | 59.794 | 97 | 31 | 1 | 1 | 89 | 1 | 97 | 5.34e-36 | 119 |
| MS.gene29405.t1 | AT3G12490 | 59.794 | 97 | 31 | 1 | 1 | 89 | 34 | 130 | 4.81e-35 | 119 |
| MS.gene29405.t1 | AT2G40880 | 56.322 | 87 | 30 | 1 | 4 | 82 | 35 | 121 | 4.21e-30 | 103 |
| MS.gene29405.t1 | AT5G12140 | 50.549 | 91 | 37 | 1 | 4 | 86 | 10 | 100 | 5.26e-27 | 95.1 |
| MS.gene29405.t1 | AT5G05110 | 48.864 | 88 | 36 | 2 | 4 | 82 | 45 | 132 | 1.68e-19 | 79.3 |
Find 21 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGAGTTCGCGATGTTTC+AGG | 0.215517 | 3.3:+31667697 | MS.gene29405:CDS |
| TGTTATGCAGAATTCACTTC+TGG | 0.302530 | 3.3:+31669084 | MS.gene29405:intron |
| AAAAGATGGGGTGAATAAAA+AGG | 0.330688 | 3.3:+31669177 | MS.gene29405:CDS |
| CATCGATCGCAAGACTGTTC+TGG | 0.359811 | 3.3:-31667723 | None:intergenic |
| CATACACCACATCACTTTAG+AGG | 0.393728 | 3.3:+31669153 | MS.gene29405:CDS |
| GGTTTATGAAGCCAAGGTTT+GGG | 0.416419 | 3.3:+31669198 | MS.gene29405:CDS |
| AGGTTTATGAAGCCAAGGTT+TGG | 0.435602 | 3.3:+31669197 | MS.gene29405:CDS |
| CCAAGGTTTGGGAAAAGTCT+TGG | 0.461362 | 3.3:+31669209 | MS.gene29405:CDS |
| GCTAAAGACCAAGTGGTTGC+TGG | 0.469565 | 3.3:+31669127 | MS.gene29405:CDS |
| ATCACTTTAGAGGTAAAAGA+TGG | 0.471008 | 3.3:+31669163 | MS.gene29405:CDS |
| AGTTAAGCGCTTTACTGCGC+AGG | 0.497060 | 3.3:-31669277 | None:intergenic |
| CTCTAAAGTGATGTGGTGTA+TGG | 0.517466 | 3.3:-31669152 | None:intergenic |
| AAAGTCTTGGATGAACTTCA+AGG | 0.534205 | 3.3:+31669222 | MS.gene29405:CDS |
| AGAAGAATGGCAACGCTTGG+TGG | 0.543963 | 3.3:+31667679 | None:intergenic |
| AGAAGAAGAATGGCAACGCT+TGG | 0.566845 | 3.3:+31667676 | None:intergenic |
| TCACTTTAGAGGTAAAAGAT+GGG | 0.584369 | 3.3:+31669164 | MS.gene29405:CDS |
| GTATGGTACCAGCAACCACT+TGG | 0.591179 | 3.3:-31669135 | None:intergenic |
| CAGAACAGTCTTGCGATCGA+TGG | 0.591248 | 3.3:+31667724 | MS.gene29405:CDS |
| CACTTTAGAGGTAAAAGATG+GGG | 0.625879 | 3.3:+31669165 | MS.gene29405:CDS |
| GATAAGTGCTAAAGACCAAG+TGG | 0.690500 | 3.3:+31669120 | MS.gene29405:CDS |
| GTCTTGGATGAACTTCAAGG+AGG | 0.758137 | 3.3:+31669225 | MS.gene29405:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAACAAAATAAATAAATAAA+CGG | - | chr3.3:31668974-31668993 | None:intergenic | 10.0% |
| !! | TATTTACTAAAAAAATTACA+AGG | - | chr3.3:31667892-31667911 | None:intergenic | 10.0% |
| !!! | AATTTTGTCAAAAAAAAAAA+GGG | - | chr3.3:31668080-31668099 | None:intergenic | 10.0% |
| !!! | ATTTTAAAGAATATGATATA+AGG | - | chr3.3:31668479-31668498 | None:intergenic | 10.0% |
| !!! | CTTATTTTTTTGATTTTTTT+AGG | + | chr3.3:31668123-31668142 | MS.gene29405:intron | 10.0% |
| !!! | TAATTTTGTCAAAAAAAAAA+AGG | - | chr3.3:31668081-31668100 | None:intergenic | 10.0% |
| !!! | TTTTATCATTTTTATTTAGT+TGG | + | chr3.3:31669057-31669076 | MS.gene29405:intron | 10.0% |
| !! | ACTTTATAAATGTTTCAAAA+AGG | - | chr3.3:31668534-31668553 | None:intergenic | 15.0% |
| !! | ATAATAAGTGGTTAAATATA+TGG | - | chr3.3:31668383-31668402 | None:intergenic | 15.0% |
| !!! | ATTTTGAGAAATACTAAAAT+TGG | + | chr3.3:31668778-31668797 | MS.gene29405:intron | 15.0% |
| !!! | ATTTTGTCAAAAAAAAAAAG+GGG | - | chr3.3:31668079-31668098 | None:intergenic | 15.0% |
| !!! | TCTCAAATTTTTAATTAGAA+AGG | + | chr3.3:31668674-31668693 | MS.gene29405:intron | 15.0% |
| !!! | TTTTTCTATTGTGAAAAATT+GGG | + | chr3.3:31668153-31668172 | MS.gene29405:intron | 15.0% |
| !!! | TTTTTTCTATTGTGAAAAAT+TGG | + | chr3.3:31668152-31668171 | MS.gene29405:intron | 15.0% |
| !! | ATAAATAAATAAACGGCTTT+AGG | - | chr3.3:31668967-31668986 | None:intergenic | 20.0% |
| !! | TTAACAACTTACTCTTAATT+AGG | + | chr3.3:31668421-31668440 | MS.gene29405:intron | 20.0% |
| !! | TTGAAACATTTATAAAGTCA+AGG | + | chr3.3:31668536-31668555 | MS.gene29405:intron | 20.0% |
| !!! | AATACTAAAATTGGTTTTTG+AGG | + | chr3.3:31668787-31668806 | MS.gene29405:intron | 20.0% |
| !!! | GCAATTTTCTTTAGTTTTTT+TGG | + | chr3.3:31669019-31669038 | MS.gene29405:intron | 20.0% |
| !!! | TTTTGTCAAAAAAAAAAAGG+GGG | - | chr3.3:31668078-31668097 | None:intergenic | 20.0% |
| ! | AAAATAAGTAAAGACCCAAT+TGG | - | chr3.3:31668111-31668130 | None:intergenic | 25.0% |
| ! | ACAATGAATACTATATGAAG+GGG | + | chr3.3:31668220-31668239 | MS.gene29405:intron | 25.0% |
| ! | ACGCTACATGATAAAAAAAT+TGG | - | chr3.3:31667948-31667967 | None:intergenic | 25.0% |
| ! | ATACAAAAATCATGCGTATT+TGG | - | chr3.3:31667864-31667883 | None:intergenic | 25.0% |
| ! | CAATTGTTGAATCTATTGAT+TGG | + | chr3.3:31668628-31668647 | MS.gene29405:intron | 25.0% |
| ! | CGCTACATGATAAAAAAATT+GGG | - | chr3.3:31667947-31667966 | None:intergenic | 25.0% |
| ! | GACAATGAATACTATATGAA+GGG | + | chr3.3:31668219-31668238 | MS.gene29405:intron | 25.0% |
| ! | TACAAAAATCATGCGTATTT+GGG | - | chr3.3:31667863-31667882 | None:intergenic | 25.0% |
| ! | TATCCACTTTCTATCAATTT+AGG | + | chr3.3:31668453-31668472 | MS.gene29405:intron | 25.0% |
| ! | TTATGAGTAGTATGTCAAAA+TGG | + | chr3.3:31668328-31668347 | MS.gene29405:intron | 25.0% |
| !! | GAGACTTAATTGATAATAAG+TGG | - | chr3.3:31668395-31668414 | None:intergenic | 25.0% |
| AAAAGATGGGGTGAATAAAA+AGG | + | chr3.3:31669177-31669196 | MS.gene29405:CDS | 30.0% | |
| AAAATTACGAGAGACCAATT+GGG | + | chr3.3:31668094-31668113 | MS.gene29405:intron | 30.0% | |
| AAAGAGTGAAGTTACATTCA+AGG | - | chr3.3:31668909-31668928 | None:intergenic | 30.0% | |
| ACTTGACACTTTAATAGAGT+CGG | - | chr3.3:31668356-31668375 | None:intergenic | 30.0% | |
| CGACAATGAATACTATATGA+AGG | + | chr3.3:31668218-31668237 | MS.gene29405:intron | 30.0% | |
| TAAAAAGGTTTATGAAGCCA+AGG | + | chr3.3:31669192-31669211 | MS.gene29405:CDS | 30.0% | |
| TCTTTCAGTACTAAATGACT+TGG | + | chr3.3:31668924-31668943 | MS.gene29405:intron | 30.0% | |
| TGAAGAACACAACAAAAAAC+AGG | + | chr3.3:31667765-31667784 | MS.gene29405:intron | 30.0% | |
| TGTCAAGTAACCTAATAAGT+GGG | - | chr3.3:31668268-31668287 | None:intergenic | 30.0% | |
| TTGTCAAGTAACCTAATAAG+TGG | - | chr3.3:31668269-31668288 | None:intergenic | 30.0% | |
| TTTGGGAAAAAAACGATCAT+CGG | - | chr3.3:31667846-31667865 | None:intergenic | 30.0% | |
| ! | ACTCTATTAAAGTGTCAAGT+TGG | + | chr3.3:31668356-31668375 | MS.gene29405:intron | 30.0% |
| ! | ATCACTTTAGAGGTAAAAGA+TGG | + | chr3.3:31669163-31669182 | MS.gene29405:CDS | 30.0% |
| ! | TCACTTTAGAGGTAAAAGAT+GGG | + | chr3.3:31669164-31669183 | MS.gene29405:CDS | 30.0% |
| ! | TGGTTTTCTCGGTAAAAATA+TGG | + | chr3.3:31668586-31668605 | MS.gene29405:intron | 30.0% |
| !!! | AAATAAACGGCTTTAGGTTT+TGG | - | chr3.3:31668961-31668980 | None:intergenic | 30.0% |
| !!! | ATTCACTTCTGGAATTTTCA+AGG | + | chr3.3:31669095-31669114 | MS.gene29405:CDS | 30.0% |
| !!! | TTCACTTCTGGAATTTTCAA+GGG | + | chr3.3:31669096-31669115 | MS.gene29405:CDS | 30.0% |
| !!! | TTTTTTATCATGTAGCGTAG+TGG | + | chr3.3:31667950-31667969 | MS.gene29405:intron | 30.0% |
| AAAGTCTTGGATGAACTTCA+AGG | + | chr3.3:31669222-31669241 | MS.gene29405:CDS | 35.0% | |
| AATATGGAGAGCTATACTCA+AGG | + | chr3.3:31668038-31668057 | MS.gene29405:intron | 35.0% | |
| AATTTGAGAGATCTCACTGA+AGG | - | chr3.3:31668663-31668682 | None:intergenic | 35.0% | |
| ACATACTACTCATAACCTCA+AGG | - | chr3.3:31668323-31668342 | None:intergenic | 35.0% | |
| AGGCCTAAATTGATAGAAAG+TGG | - | chr3.3:31668459-31668478 | None:intergenic | 35.0% | |
| ATATGGAGAGCTATACTCAA+GGG | + | chr3.3:31668039-31668058 | MS.gene29405:intron | 35.0% | |
| CAAAATTACGAGAGACCAAT+TGG | + | chr3.3:31668093-31668112 | MS.gene29405:intron | 35.0% | |
| CACCTCTTAAAGTGAATAAG+TGG | + | chr3.3:31667982-31668001 | MS.gene29405:intron | 35.0% | |
| CCAACACTACATTGTTTCAA+TGG | - | chr3.3:31668740-31668759 | None:intergenic | 35.0% | |
| CCATTGAAACAATGTAGTGT+TGG | + | chr3.3:31668737-31668756 | MS.gene29405:intron | 35.0% | |
| CTCCACTTATTCACTTTAAG+AGG | - | chr3.3:31667987-31668006 | None:intergenic | 35.0% | |
| CTTGACACTTTAATAGAGTC+GGG | - | chr3.3:31668355-31668374 | None:intergenic | 35.0% | |
| GTCAAGTAACCTAATAAGTG+GGG | - | chr3.3:31668267-31668286 | None:intergenic | 35.0% | |
| TGTATAAAGTTTACGATGCG+AGG | - | chr3.3:31668846-31668865 | None:intergenic | 35.0% | |
| TGTTATGCAGAATTCACTTC+TGG | + | chr3.3:31669084-31669103 | MS.gene29405:intron | 35.0% | |
| TGTTCCTTAAACAAGATCAC+AGG | - | chr3.3:31668706-31668725 | None:intergenic | 35.0% | |
| ! | CACTTTAGAGGTAAAAGATG+GGG | + | chr3.3:31669165-31669184 | MS.gene29405:CDS | 35.0% |
| ! | GTTGAATCTATTGATTGGTC+TGG | + | chr3.3:31668633-31668652 | MS.gene29405:intron | 35.0% |
| !! | CTTTAGGTTTTGGTAAGAGA+CGG | - | chr3.3:31668951-31668970 | None:intergenic | 35.0% |
| !!! | CTTTTACCTCTAAAGTGATG+TGG | - | chr3.3:31669162-31669181 | None:intergenic | 35.0% |
| AATACTATATGAAGGGGCTG+AGG | + | chr3.3:31668226-31668245 | MS.gene29405:intron | 40.0% | |
| ACCAACTGAGCTAAACTCAT+GGG | - | chr3.3:31668188-31668207 | None:intergenic | 40.0% | |
| ACTTTGACACCCCACTTATT+AGG | + | chr3.3:31668255-31668274 | MS.gene29405:intron | 40.0% | |
| AGGTTTATGAAGCCAAGGTT+TGG | + | chr3.3:31669197-31669216 | MS.gene29405:CDS | 40.0% | |
| ATAACCTCAAGGACCTACTT+CGG | - | chr3.3:31668312-31668331 | None:intergenic | 40.0% | |
| CATACACCACATCACTTTAG+AGG | + | chr3.3:31669153-31669172 | MS.gene29405:CDS | 40.0% | |
| GACTGCTAGATTCATACAAG+AGG | + | chr3.3:31668883-31668902 | MS.gene29405:intron | 40.0% | |
| GAGTATAGCTCTCCATATTG+CGG | - | chr3.3:31668037-31668056 | None:intergenic | 40.0% | |
| GATAAGTGCTAAAGACCAAG+TGG | + | chr3.3:31669120-31669139 | MS.gene29405:CDS | 40.0% | |
| GGTTTATGAAGCCAAGGTTT+GGG | + | chr3.3:31669198-31669217 | MS.gene29405:CDS | 40.0% | |
| TACCAACTGAGCTAAACTCA+TGG | - | chr3.3:31668189-31668208 | None:intergenic | 40.0% | |
| ! | CGAACCTGTGATCTTGTTTA+AGG | + | chr3.3:31668699-31668718 | MS.gene29405:intron | 40.0% |
| !! | CTCTAAAGTGATGTGGTGTA+TGG | - | chr3.3:31669155-31669174 | None:intergenic | 40.0% |
| !! | GAATCTATTGATTGGTCTGG+AGG | + | chr3.3:31668636-31668655 | MS.gene29405:intron | 40.0% |
| CCAACTGAGCTAAACTCATG+GGG | - | chr3.3:31668187-31668206 | None:intergenic | 45.0% | |
| CCAAGGTTTGGGAAAAGTCT+TGG | + | chr3.3:31669209-31669228 | MS.gene29405:CDS | 45.0% | |
| CGAGAAAACCACCAATTGCA+GGG | - | chr3.3:31668577-31668596 | None:intergenic | 45.0% | |
| GTCTTGGATGAACTTCAAGG+AGG | + | chr3.3:31669225-31669244 | MS.gene29405:CDS | 45.0% | |
| TACGCTTGCATACCGCAATA+TGG | + | chr3.3:31668022-31668041 | MS.gene29405:intron | 45.0% | |
| ! | ATTGCAGGGCACTCTTACAT+AGG | - | chr3.3:31668563-31668582 | None:intergenic | 45.0% |
| ! | CCAAGACTTTTCCCAAACCT+TGG | - | chr3.3:31669212-31669231 | None:intergenic | 45.0% |
| !! | ATGTAAGAGTGCCCTGCAAT+TGG | + | chr3.3:31668563-31668582 | MS.gene29405:intron | 45.0% |
| !! | ATTGAGTTGACCTCCGAAGT+AGG | + | chr3.3:31668296-31668315 | MS.gene29405:intron | 45.0% |
| !! | CCTGCAATTGGTGGTTTTCT+CGG | + | chr3.3:31668575-31668594 | MS.gene29405:intron | 45.0% |
| !!! | TTATTTTTTTGATTTTTTTA+GGG | + | chr3.3:31668124-31668143 | MS.gene29405:intron | 5.0% |
| CAGAACAGTCTTGCGATCGA+TGG | + | chr3.3:31667724-31667743 | MS.gene29405:CDS | 50.0% | |
| CATCGATCGCAAGACTGTTC+TGG | - | chr3.3:31667726-31667745 | None:intergenic | 50.0% | |
| CCGAGAAAACCACCAATTGC+AGG | - | chr3.3:31668578-31668597 | None:intergenic | 50.0% | |
| CTGAGCTAAACTCATGGGGA+CGG | - | chr3.3:31668183-31668202 | None:intergenic | 50.0% | |
| GCTAAAGACCAAGTGGTTGC+TGG | + | chr3.3:31669127-31669146 | MS.gene29405:CDS | 50.0% | |
| GTATGGTACCAGCAACCACT+TGG | - | chr3.3:31669138-31669157 | None:intergenic | 50.0% | |
| ! | CCCCATGAGTTTAGCTCAGT+TGG | + | chr3.3:31668184-31668203 | MS.gene29405:intron | 50.0% |
| !! | TAAGAGTGCCCTGCAATTGG+TGG | + | chr3.3:31668566-31668585 | MS.gene29405:intron | 50.0% |
| ACCTCAAGGACCTACTTCGG+AGG | - | chr3.3:31668309-31668328 | None:intergenic | 55.0% | |
| ACCTCCGAAGTAGGTCCTTG+AGG | + | chr3.3:31668305-31668324 | MS.gene29405:intron | 55.0% | |
| GGTGGAGTTCGCGATGTTTC+AGG | + | chr3.3:31667697-31667716 | MS.gene29405:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 31667685 | 31669288 | 31667685 | ID=MS.gene29405 |
| chr3.3 | mRNA | 31667685 | 31669288 | 31667685 | ID=MS.gene29405.t1;Parent=MS.gene29405 |
| chr3.3 | exon | 31667685 | 31667762 | 31667685 | ID=MS.gene29405.t1.exon1;Parent=MS.gene29405.t1 |
| chr3.3 | CDS | 31667685 | 31667762 | 31667685 | ID=cds.MS.gene29405.t1;Parent=MS.gene29405.t1 |
| chr3.3 | exon | 31669094 | 31669288 | 31669094 | ID=MS.gene29405.t1.exon2;Parent=MS.gene29405.t1 |
| chr3.3 | CDS | 31669094 | 31669288 | 31669094 | ID=cds.MS.gene29405.t1;Parent=MS.gene29405.t1 |
| Gene Sequence |
| Protein sequence |
