Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066067.t1 | XP_013470223.1 | 82.6 | 207 | 9 | 3 | 1 | 187 | 7 | 206 | 4.30E-78 | 300.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066067.t1 | Q9SX28 | 68.0 | 206 | 40 | 3 | 1 | 187 | 7 | 205 | 8.9e-64 | 244.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066067.t1 | I3SF71 | 82.6 | 207 | 9 | 3 | 1 | 187 | 7 | 206 | 3.1e-78 | 300.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene066067 | 0.803414 | 3.53E-49 | -1.69E-46 |
| MS.gene049382 | MS.gene066067 | 0.811716 | 6.09E-51 | -1.69E-46 |
| MS.gene049424 | MS.gene066067 | 0.849538 | 3.03E-60 | -1.69E-46 |
| MS.gene049653 | MS.gene066067 | 0.842173 | 3.04E-58 | -1.69E-46 |
| MS.gene05016 | MS.gene066067 | 0.810906 | 9.13E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene066067 | 0.808639 | 2.81E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene066067 | 0.805531 | 1.28E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene066067 | 0.814836 | 1.26E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene066067 | 0.807668 | 4.52E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene066067 | 0.803948 | 2.73E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene066067 | 0.800469 | 1.42E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene066067 | 0.823028 | 1.73E-53 | -1.69E-46 |
| MS.gene050987 | MS.gene066067 | 0.853879 | 1.78E-61 | -1.69E-46 |
| MS.gene051243 | MS.gene066067 | 0.854914 | 8.96E-62 | -1.69E-46 |
| MS.gene051245 | MS.gene066067 | 0.809354 | 1.97E-50 | -1.69E-46 |
| MS.gene051577 | MS.gene066067 | 0.810639 | 1.04E-50 | -1.69E-46 |
| MS.gene051757 | MS.gene066067 | 0.810774 | 9.75E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene066067 | 0.835802 | 1.36E-56 | -1.69E-46 |
| MS.gene052286 | MS.gene066067 | 0.858484 | 7.98E-63 | -1.69E-46 |
| MS.gene052302 | MS.gene066067 | 0.829762 | 4.29E-55 | -1.69E-46 |
| MS.gene052376 | MS.gene066067 | 0.82386 | 1.10E-53 | -1.69E-46 |
| MS.gene052426 | MS.gene066067 | 0.811084 | 8.36E-51 | -1.69E-46 |
| MS.gene052856 | MS.gene066067 | 0.817017 | 4.10E-52 | -1.69E-46 |
| MS.gene052858 | MS.gene066067 | 0.814287 | 1.66E-51 | -1.69E-46 |
| MS.gene052860 | MS.gene066067 | 0.818432 | 1.97E-52 | -1.69E-46 |
| MS.gene053188 | MS.gene066067 | 0.821904 | 3.15E-53 | -1.69E-46 |
| MS.gene053216 | MS.gene066067 | 0.819982 | 8.72E-53 | -1.69E-46 |
| MS.gene053565 | MS.gene066067 | 0.801527 | 8.63E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene066067 | 0.804667 | 1.94E-49 | -1.69E-46 |
| MS.gene054472 | MS.gene066067 | 0.807217 | 5.63E-50 | -1.69E-46 |
| MS.gene054537 | MS.gene066067 | 0.815883 | 7.36E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene066067 | 0.807056 | 6.09E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene066067 | 0.84318 | 1.64E-58 | -1.69E-46 |
| MS.gene055512 | MS.gene066067 | 0.802336 | 5.89E-49 | -1.69E-46 |
| MS.gene055623 | MS.gene066067 | 0.848735 | 5.07E-60 | -1.69E-46 |
| MS.gene055818 | MS.gene066067 | 0.826541 | 2.56E-54 | -1.69E-46 |
| MS.gene056760 | MS.gene066067 | 0.846925 | 1.60E-59 | -1.69E-46 |
| MS.gene057047 | MS.gene066067 | 0.809046 | 2.30E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene066067 | 0.805361 | 1.39E-49 | -1.69E-46 |
| MS.gene057108 | MS.gene066067 | 0.815731 | 7.95E-52 | -1.69E-46 |
| MS.gene057109 | MS.gene066067 | 0.81204 | 5.18E-51 | -1.69E-46 |
| MS.gene057110 | MS.gene066067 | 0.814051 | 1.88E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene066067 | 0.818616 | 1.79E-52 | -1.69E-46 |
| MS.gene057234 | MS.gene066067 | 0.800497 | 1.40E-48 | -1.69E-46 |
| MS.gene057392 | MS.gene066067 | 0.833423 | 5.38E-56 | -1.69E-46 |
| MS.gene057754 | MS.gene066067 | 0.809384 | 1.94E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene066067 | 0.834379 | 3.10E-56 | -1.69E-46 |
| MS.gene05795 | MS.gene066067 | 0.843356 | 1.47E-58 | -1.69E-46 |
| MS.gene058055 | MS.gene066067 | 0.815974 | 7.02E-52 | -1.69E-46 |
| MS.gene058126 | MS.gene066067 | 0.803303 | 3.72E-49 | -1.69E-46 |
| MS.gene058146 | MS.gene066067 | 0.802136 | 6.47E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene066067 | 0.820487 | 6.68E-53 | -1.69E-46 |
| MS.gene058399 | MS.gene066067 | 0.800235 | 1.59E-48 | -1.69E-46 |
| MS.gene058906 | MS.gene066067 | 0.814613 | 1.41E-51 | -1.69E-46 |
| MS.gene059317 | MS.gene066067 | 0.825966 | 3.51E-54 | -1.69E-46 |
| MS.gene05978 | MS.gene066067 | 0.809865 | 1.53E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene066067 | 0.818736 | 1.68E-52 | -1.69E-46 |
| MS.gene060918 | MS.gene066067 | 0.834164 | 3.51E-56 | -1.69E-46 |
| MS.gene060998 | MS.gene066067 | 0.831339 | 1.77E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066067.t1 | MTR_1g111390 | 77.295 | 207 | 20 | 3 | 1 | 187 | 7 | 206 | 4.51e-103 | 296 |
| MS.gene066067.t1 | MTR_7g079850 | 42.708 | 192 | 96 | 3 | 2 | 186 | 76 | 260 | 1.42e-38 | 134 |
| MS.gene066067.t1 | MTR_1g046730 | 40.609 | 197 | 104 | 5 | 1 | 187 | 151 | 344 | 1.86e-29 | 111 |
| MS.gene066067.t1 | MTR_5g009810 | 32.821 | 195 | 120 | 4 | 1 | 187 | 138 | 329 | 1.81e-16 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066067.t1 | AT1G68650 | 63.768 | 207 | 47 | 5 | 1 | 187 | 7 | 205 | 2.00e-81 | 241 |
| MS.gene066067.t1 | AT1G25520 | 61.722 | 209 | 50 | 4 | 1 | 187 | 7 | 207 | 1.63e-79 | 236 |
| MS.gene066067.t1 | AT5G36290 | 40.722 | 194 | 94 | 5 | 4 | 186 | 87 | 270 | 8.29e-36 | 127 |
| MS.gene066067.t1 | AT5G36290 | 40.722 | 194 | 94 | 5 | 4 | 186 | 87 | 270 | 8.29e-36 | 127 |
| MS.gene066067.t1 | AT4G13590 | 42.574 | 202 | 93 | 7 | 1 | 187 | 145 | 338 | 6.50e-31 | 115 |
| MS.gene066067.t1 | AT4G13590 | 42.574 | 202 | 93 | 7 | 1 | 187 | 145 | 338 | 8.09e-31 | 115 |
| MS.gene066067.t1 | AT1G64150 | 34.021 | 194 | 116 | 5 | 1 | 186 | 158 | 347 | 1.06e-16 | 77.0 |
Find 43 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTTGAAAGAGGCTATATT+TGG | 0.236172 | 1.4:-85155854 | MS.gene066067:CDS |
| TTTCTCTCCCATCTTGTTAC+AGG | 0.249070 | 1.4:-85155009 | MS.gene066067:intron |
| TTCTCTCTGTTCTTGTTGGT+TGG | 0.281934 | 1.4:-85156187 | MS.gene066067:CDS |
| AACCCATTTGGCGTGGTTCT+TGG | 0.294089 | 1.4:-85154728 | MS.gene066067:CDS |
| TGTACTTCTGCTGCTGTTAT+CGG | 0.295744 | 1.4:-85154417 | MS.gene066067:CDS |
| AAAAGAATGCTCACCAGATT+TGG | 0.305070 | 1.4:+85156158 | None:intergenic |
| ACAATTCTCTCTGTTCTTGT+TGG | 0.313902 | 1.4:-85156191 | MS.gene066067:CDS |
| ATTACGACGTTCTTATTCTT+CGG | 0.319927 | 1.4:-85155890 | MS.gene066067:CDS |
| TGGTTGGGCTGCTCCAAATC+TGG | 0.336034 | 1.4:-85156171 | MS.gene066067:CDS |
| CCACGACGCCTTGTCTTAAC+AGG | 0.342518 | 1.4:-85156361 | MS.gene066067:CDS |
| TCTCTCTGTTCTTGTTGGTT+GGG | 0.349163 | 1.4:-85156186 | MS.gene066067:CDS |
| TTACGACGTTCTTATTCTTC+GGG | 0.364759 | 1.4:-85155889 | MS.gene066067:CDS |
| TATTCTTCGGGTTTGGACTT+TGG | 0.392999 | 1.4:-85155877 | MS.gene066067:CDS |
| CCTCCAAGAACCACGCCAAA+TGG | 0.394458 | 1.4:+85154725 | None:intergenic |
| ACGTTCTTATTCTTCGGGTT+TGG | 0.403780 | 1.4:-85155884 | MS.gene066067:CDS |
| GGCTGAAGTTGAAGCTGAAC+TGG | 0.424673 | 1.4:-85155696 | MS.gene066067:intron |
| TCCAAATATAGCCTCTTTCA+AGG | 0.428412 | 1.4:+85155853 | None:intergenic |
| GCTGCAGATGAAAACCCATT+TGG | 0.436487 | 1.4:-85154740 | MS.gene066067:CDS |
| TTATGCAGATCTCTCGTAGT+TGG | 0.455915 | 1.4:-85155923 | MS.gene066067:intron |
| TATGCAGATCTCTCGTAGTT+GGG | 0.473253 | 1.4:-85155922 | MS.gene066067:intron |
| CCATTTGGCGTGGTTCTTGG+AGG | 0.480629 | 1.4:-85154725 | MS.gene066067:CDS |
| TTCATCTGCAGCTAAACCTA+TGG | 0.483168 | 1.4:+85154751 | None:intergenic |
| ATTTATTACCTGTAACAAGA+TGG | 0.486365 | 1.4:+85155001 | None:intergenic |
| CATTTGGCGTGGTTCTTGGA+GGG | 0.488586 | 1.4:-85154724 | MS.gene066067:CDS |
| TTTGTTCAGTTGGCTACCAT+AGG | 0.495409 | 1.4:-85154767 | MS.gene066067:intron |
| TGGACTTTGGTCCTTGAAAG+AGG | 0.497549 | 1.4:-85155864 | MS.gene066067:CDS |
| CTCCAAGAACCACGCCAAAT+GGG | 0.499798 | 1.4:+85154726 | None:intergenic |
| TTTATTACCTGTAACAAGAT+GGG | 0.502150 | 1.4:+85155002 | None:intergenic |
| GGACAGGGAATCAGAGGAGT+TGG | 0.506438 | 1.4:-85155717 | MS.gene066067:intron |
| CTGTTAAGACAAGGCGTCGT+GGG | 0.520280 | 1.4:+85156362 | None:intergenic |
| AGAATAAGAACGTCGTAATG+TGG | 0.529251 | 1.4:+85155894 | None:intergenic |
| AAAGAGGCTATATTTGGAGA+AGG | 0.530172 | 1.4:-85155848 | MS.gene066067:CDS |
| AAGAGGCTATATTTGGAGAA+GGG | 0.538449 | 1.4:-85155847 | MS.gene066067:intron |
| TTTGATGGACAGGGAATCAG+AGG | 0.572662 | 1.4:-85155723 | MS.gene066067:intron |
| ACTTCTGCTGCTGTTATCGG+AGG | 0.588680 | 1.4:-85154414 | MS.gene066067:CDS |
| GATCTCAGAGAGAACGGTCA+TGG | 0.590501 | 1.4:+85156941 | None:intergenic |
| ATGACCGTTCTCTCTGAGAT+CGG | 0.592001 | 1.4:-85156939 | MS.gene066067:CDS |
| CCTGTTAAGACAAGGCGTCG+TGG | 0.599776 | 1.4:+85156361 | None:intergenic |
| CGAGGCAACCTGTTAAGACA+AGG | 0.611382 | 1.4:+85156353 | None:intergenic |
| ATCACCGATCTCAGAGAGAA+CGG | 0.615665 | 1.4:+85156935 | None:intergenic |
| CTTCTGCTGCTGTTATCGGA+GGG | 0.621384 | 1.4:-85154413 | MS.gene066067:CDS |
| AGATGAAAACCCATTTGGCG+TGG | 0.640914 | 1.4:-85154735 | MS.gene066067:CDS |
| TTCTTACTATCAAAGCTGCG+AGG | 0.724515 | 1.4:+85156335 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTAGTTGTTTATTAC+AGG | - | chr1.4:85156888-85156907 | MS.gene066067:intron | 15.0% |
| !! | ATTATTAGTTGTTTATTACA+GGG | - | chr1.4:85156889-85156908 | MS.gene066067:intron | 15.0% |
| !! | AATAGCATGAAAATCAATAA+GGG | + | chr1.4:85155399-85155418 | None:intergenic | 20.0% |
| !! | AGATAACAAATATATCAAAC+AGG | - | chr1.4:85154859-85154878 | MS.gene066067:intron | 20.0% |
| !! | ATATGACAATAATGTGTATT+AGG | + | chr1.4:85156257-85156276 | None:intergenic | 20.0% |
| !! | ATCAAAGAAAAAAGATAATG+CGG | + | chr1.4:85155371-85155390 | None:intergenic | 20.0% |
| !! | ATTCAGTTACAATTCATTAT+TGG | - | chr1.4:85154645-85154664 | MS.gene066067:intron | 20.0% |
| !! | CAAATATATCTTTAACCATT+TGG | + | chr1.4:85155983-85156002 | None:intergenic | 20.0% |
| !! | CAAATGGTTAAAGATATATT+TGG | - | chr1.4:85155981-85156000 | MS.gene066067:intron | 20.0% |
| !! | CTTGTAAAATTTCGAATTAT+AGG | - | chr1.4:85155121-85155140 | MS.gene066067:intron | 20.0% |
| !! | GAGTTTCAATTTCAAATATT+AGG | - | chr1.4:85154702-85154721 | MS.gene066067:intron | 20.0% |
| !! | GTTTCATTTCTTGTATATAT+TGG | - | chr1.4:85156508-85156527 | MS.gene066067:intron | 20.0% |
| !! | TAAAACAAAGATAACAAATC+TGG | + | chr1.4:85155072-85155091 | None:intergenic | 20.0% |
| !! | TAACTTATCATACTTTGAAT+AGG | - | chr1.4:85156075-85156094 | MS.gene066067:intron | 20.0% |
| !! | TAATAGCATGAAAATCAATA+AGG | + | chr1.4:85155400-85155419 | None:intergenic | 20.0% |
| !! | TTATTAGTTGTTTATTACAG+GGG | - | chr1.4:85156890-85156909 | MS.gene066067:intron | 20.0% |
| !! | TTCATTAGAAATGTATAATC+AGG | + | chr1.4:85155546-85155565 | None:intergenic | 20.0% |
| !! | TTCGTAATAAATTCATTTGA+TGG | - | chr1.4:85155602-85155621 | MS.gene066067:intron | 20.0% |
| !!! | ACATTATTGTCATATTTTTC+AGG | - | chr1.4:85156262-85156281 | MS.gene066067:intron | 20.0% |
| !!! | AGTAGACAAAATATTTTCTA+TGG | + | chr1.4:85155942-85155961 | None:intergenic | 20.0% |
| !!! | CTATAATTCGAAATTTTACA+AGG | + | chr1.4:85155123-85155142 | None:intergenic | 20.0% |
| !!! | TAACTTTTTTTTTGTTCAGT+TGG | - | chr1.4:85156563-85156582 | MS.gene066067:intron | 20.0% |
| !!! | TTATCTTTGTTTTAAAGTAG+TGG | - | chr1.4:85155078-85155097 | MS.gene066067:intron | 20.0% |
| ! | AACAAATATATCAAACAGGA+AGG | - | chr1.4:85154863-85154882 | MS.gene066067:intron | 25.0% |
| ! | ACAAATATATCAAACAGGAA+GGG | - | chr1.4:85154864-85154883 | MS.gene066067:intron | 25.0% |
| ! | AGTGAAAAAGGAATCAAATT+TGG | + | chr1.4:85156408-85156427 | None:intergenic | 25.0% |
| ! | ATAATTCCTAAAATTGAAGG+GGG | - | chr1.4:85154751-85154770 | MS.gene066067:CDS | 25.0% |
| ! | ATGCCACAAAAAAACATAAA+CGG | - | chr1.4:85156291-85156310 | MS.gene066067:intron | 25.0% |
| ! | ATTGTAATTAGGACAAAGAT+TGG | - | chr1.4:85155734-85155753 | MS.gene066067:intron | 25.0% |
| ! | ATTTATTACCTGTAACAAGA+TGG | + | chr1.4:85156342-85156361 | None:intergenic | 25.0% |
| ! | CATAATTCCTAAAATTGAAG+GGG | - | chr1.4:85154750-85154769 | MS.gene066067:CDS | 25.0% |
| ! | GAAAATAGTCATAATCTTGA+AGG | + | chr1.4:85156702-85156721 | None:intergenic | 25.0% |
| ! | GAATTCAGTTAAATATTGCA+TGG | + | chr1.4:85156376-85156395 | None:intergenic | 25.0% |
| ! | GAGAAAAACTGAGATAAAAA+TGG | + | chr1.4:85156317-85156336 | None:intergenic | 25.0% |
| ! | GCATAATTCCTAAAATTGAA+GGG | - | chr1.4:85154749-85154768 | MS.gene066067:CDS | 25.0% |
| ! | TATTAGTTGTTTATTACAGG+GGG | - | chr1.4:85156891-85156910 | MS.gene066067:intron | 25.0% |
| ! | TCAAAGAAAAAAGATAATGC+GGG | + | chr1.4:85155370-85155389 | None:intergenic | 25.0% |
| ! | TCAGCATGAGTATATATTAT+AGG | - | chr1.4:85155324-85155343 | MS.gene066067:intron | 25.0% |
| ! | TGCATAATTCCTAAAATTGA+AGG | - | chr1.4:85154748-85154767 | MS.gene066067:CDS | 25.0% |
| ! | TGTGATATTTGATTACCAAA+TGG | - | chr1.4:85155965-85155984 | MS.gene066067:intron | 25.0% |
| ! | TTGAGGTGAGAAAATAAATA+AGG | + | chr1.4:85154480-85154499 | None:intergenic | 25.0% |
| ! | TTGTCCTAATTACAATACAA+GGG | + | chr1.4:85155730-85155749 | None:intergenic | 25.0% |
| ! | TTTATTACCTGTAACAAGAT+GGG | + | chr1.4:85156341-85156360 | None:intergenic | 25.0% |
| ! | TTTGTCCTAATTACAATACA+AGG | + | chr1.4:85155731-85155750 | None:intergenic | 25.0% |
| !! | AATAAATTCATTTGATGGAC+AGG | - | chr1.4:85155607-85155626 | MS.gene066067:intron | 25.0% |
| !! | AGATTATGACTATTTTCCTT+TGG | - | chr1.4:85156705-85156724 | MS.gene066067:intron | 25.0% |
| !! | ATAAATTCATTTGATGGACA+GGG | - | chr1.4:85155608-85155627 | MS.gene066067:intron | 25.0% |
| !!! | CAGGTATTATTTTACCTTTT+TGG | + | chr1.4:85155790-85155809 | None:intergenic | 25.0% |
| !!! | GCATTTTCTATCACTTTTTT+TGG | - | chr1.4:85156440-85156459 | MS.gene066067:intron | 25.0% |
| !!! | GTTGGTTTTTCAACATTATT+TGG | - | chr1.4:85155666-85155685 | MS.gene066067:intron | 25.0% |
| !!! | TATCACTTTTTTTGGTGAAT+GGG | - | chr1.4:85156448-85156467 | MS.gene066067:intron | 25.0% |
| !!! | TGAATAGTTATTGAGTTGAT+TGG | + | chr1.4:85154571-85154590 | None:intergenic | 25.0% |
| AAAAGGAATCAAATTTGGCA+TGG | + | chr1.4:85156403-85156422 | None:intergenic | 30.0% | |
| AACACCCTTGTATTGTAATT+AGG | - | chr1.4:85155723-85155742 | MS.gene066067:intron | 30.0% | |
| AGCTACAAAAGATACCAAAA+AGG | - | chr1.4:85155773-85155792 | MS.gene066067:intron | 30.0% | |
| ATTACGACGTTCTTATTCTT+CGG | - | chr1.4:85155450-85155469 | MS.gene066067:intron | 30.0% | |
| CAAATCTGGAAAAGAAAGAA+AGG | + | chr1.4:85155058-85155077 | None:intergenic | 30.0% | |
| CAGCACAGATTTAATTAAAC+AGG | + | chr1.4:85155809-85155828 | None:intergenic | 30.0% | |
| GTTAATGAAGAAACAAATGC+AGG | + | chr1.4:85156734-85156753 | None:intergenic | 30.0% | |
| TAAGAAATTTGTAGCACCTT+AGG | + | chr1.4:85156856-85156875 | None:intergenic | 30.0% | |
| TAATTAGGACAAAGATTGGA+AGG | - | chr1.4:85155738-85155757 | MS.gene066067:intron | 30.0% | |
| TGATGCTTATTTCAAGATAC+TGG | - | chr1.4:85154945-85154964 | MS.gene066067:intron | 30.0% | |
| TGCTACAAATTTCTTAGAAG+AGG | - | chr1.4:85156860-85156879 | MS.gene066067:intron | 30.0% | |
| ! | AGTAGTGCAATTGAAGATTT+TGG | + | chr1.4:85156132-85156151 | None:intergenic | 30.0% |
| ! | ATCTCAGATTTCTGAAAAAG+TGG | - | chr1.4:85156961-85156980 | MS.gene066067:CDS | 30.0% |
| ! | TCTCAGATTTCTGAAAAAGT+GGG | - | chr1.4:85156962-85156981 | MS.gene066067:CDS | 30.0% |
| !! | GTATAATCAGGTTGATATGA+GGG | + | chr1.4:85155534-85155553 | None:intergenic | 30.0% |
| !! | TGATGATTCTGAAGTTAAAC+CGG | + | chr1.4:85155211-85155230 | None:intergenic | 30.0% |
| !! | TGTATAATCAGGTTGATATG+AGG | + | chr1.4:85155535-85155554 | None:intergenic | 30.0% |
| !!! | ATCACTTTTTTTGGTGAATG+GGG | - | chr1.4:85156449-85156468 | MS.gene066067:intron | 30.0% |
| !!! | CTATCACTTTTTTTGGTGAA+TGG | - | chr1.4:85156447-85156466 | MS.gene066067:intron | 30.0% |
| AAAAGAATGCTCACCAGATT+TGG | + | chr1.4:85155185-85155204 | None:intergenic | 35.0% | |
| AAAGAGGCTATATTTGGAGA+AGG | - | chr1.4:85155492-85155511 | MS.gene066067:intron | 35.0% | |
| AAGAGGCTATATTTGGAGAA+GGG | - | chr1.4:85155493-85155512 | MS.gene066067:intron | 35.0% | |
| ACAATTCTCTCTGTTCTTGT+TGG | - | chr1.4:85155149-85155168 | MS.gene066067:intron | 35.0% | |
| ACAGATATGTCTTATGCCTA+AGG | - | chr1.4:85156837-85156856 | MS.gene066067:intron | 35.0% | |
| AGAATAAGAACGTCGTAATG+TGG | + | chr1.4:85155449-85155468 | None:intergenic | 35.0% | |
| AGAGTGTAGTGTTTGTTTAG+AGG | - | chr1.4:85156802-85156821 | MS.gene066067:intron | 35.0% | |
| TACACTCTTTCACATTTGCA+AGG | + | chr1.4:85156790-85156809 | None:intergenic | 35.0% | |
| TAGGAACTTCAAATCTTGCA+AGG | - | chr1.4:85156094-85156113 | MS.gene066067:intron | 35.0% | |
| TCCAAATATAGCCTCTTTCA+AGG | + | chr1.4:85155490-85155509 | None:intergenic | 35.0% | |
| TCCTTGAAAGAGGCTATATT+TGG | - | chr1.4:85155486-85155505 | MS.gene066067:intron | 35.0% | |
| TGTTCTGTTGTTGTAGTTCT+AGG | + | chr1.4:85156012-85156031 | None:intergenic | 35.0% | |
| TTACGACGTTCTTATTCTTC+GGG | - | chr1.4:85155451-85155470 | MS.gene066067:intron | 35.0% | |
| ! | GTTTTCTAACTATCCTTACC+TGG | + | chr1.4:85156486-85156505 | None:intergenic | 35.0% |
| ! | TTATCACCCCCTTCAATTTT+AGG | + | chr1.4:85154760-85154779 | None:intergenic | 35.0% |
| !!! | TAAGACTTTTTTTGCAGCTG+CGG | - | chr1.4:85154427-85154446 | MS.gene066067:CDS | 35.0% |
| !!! | TCACTTTTTTTGGTGAATGG+GGG | - | chr1.4:85156450-85156469 | MS.gene066067:intron | 35.0% |
| !!! | TGGCCGTTTATGTTTTTTTG+TGG | + | chr1.4:85156297-85156316 | None:intergenic | 35.0% |
| AAACAAATGCAGGCAACCAA+AGG | + | chr1.4:85156724-85156743 | None:intergenic | 40.0% | |
| AGATCAAAGAGTGAACATGG+AGG | + | chr1.4:85155847-85155866 | None:intergenic | 40.0% | |
| CTGAGATCAAAGAGTGAACA+TGG | + | chr1.4:85155850-85155869 | None:intergenic | 40.0% | |
| CTGCAGATTGGAAGTGAAAA+AGG | + | chr1.4:85156420-85156439 | None:intergenic | 40.0% | |
| GATAGAAAATGCCTGCAGAT+TGG | + | chr1.4:85156432-85156451 | None:intergenic | 40.0% | |
| TATCAAACAGGAAGGGCTAA+TGG | - | chr1.4:85154871-85154890 | MS.gene066067:intron | 40.0% | |
| TATGCAGATCTCTCGTAGTT+GGG | - | chr1.4:85155418-85155437 | MS.gene066067:intron | 40.0% | |
| TGTACTTCTGCTGCTGTTAT+CGG | - | chr1.4:85156923-85156942 | MS.gene066067:CDS | 40.0% | |
| TGTTATCTTATCGTGACTCG+TGG | - | chr1.4:85155264-85155283 | MS.gene066067:intron | 40.0% | |
| TTATGCAGATCTCTCGTAGT+TGG | - | chr1.4:85155417-85155436 | MS.gene066067:intron | 40.0% | |
| TTCATCTGCAGCTAAACCTA+TGG | + | chr1.4:85156592-85156611 | None:intergenic | 40.0% | |
| TTCTCTCTGTTCTTGTTGGT+TGG | - | chr1.4:85155153-85155172 | MS.gene066067:intron | 40.0% | |
| TTCTTACTATCAAAGCTGCG+AGG | + | chr1.4:85155008-85155027 | None:intergenic | 40.0% | |
| TTTCTCTCCCATCTTGTTAC+AGG | - | chr1.4:85156331-85156350 | MS.gene066067:intron | 40.0% | |
| TTTGTTCAGTTGGCTACCAT+AGG | - | chr1.4:85156573-85156592 | MS.gene066067:intron | 40.0% | |
| ! | ACGTTCTTATTCTTCGGGTT+TGG | - | chr1.4:85155456-85155475 | MS.gene066067:intron | 40.0% |
| ! | TATTCTTCGGGTTTGGACTT+TGG | - | chr1.4:85155463-85155482 | MS.gene066067:intron | 40.0% |
| ! | TCTCTCTGTTCTTGTTGGTT+GGG | - | chr1.4:85155154-85155173 | MS.gene066067:intron | 40.0% |
| !! | CTTTTTCACTTCCAATCTGC+AGG | - | chr1.4:85156418-85156437 | MS.gene066067:intron | 40.0% |
| !!! | CACTTTTTTTGGTGAATGGG+GGG | - | chr1.4:85156451-85156470 | MS.gene066067:intron | 40.0% |
| !!! | TGGTGAGCATTCTTTTTTGC+CGG | - | chr1.4:85155189-85155208 | MS.gene066067:intron | 40.0% |
| AGAGTGTGATATCTGAGCTG+AGG | + | chr1.4:85154507-85154526 | None:intergenic | 45.0% | |
| AGATGAAAACCCATTTGGCG+TGG | - | chr1.4:85156605-85156624 | MS.gene066067:intron | 45.0% | |
| ATCACCGATCTCAGAGAGAA+CGG | + | chr1.4:85154408-85154427 | None:intergenic | 45.0% | |
| ATGACCGCACATCGTCTTAA+GGG | + | chr1.4:85155898-85155917 | None:intergenic | 45.0% | |
| GAAGTTGAAGCTGAACTGGT+TGG | - | chr1.4:85155648-85155667 | MS.gene066067:intron | 45.0% | |
| GCTGCAGATGAAAACCCATT+TGG | - | chr1.4:85156600-85156619 | MS.gene066067:intron | 45.0% | |
| TATGACCGCACATCGTCTTA+AGG | + | chr1.4:85155899-85155918 | None:intergenic | 45.0% | |
| TGGACTTTGGTCCTTGAAAG+AGG | - | chr1.4:85155476-85155495 | MS.gene066067:intron | 45.0% | |
| TTGGAGGGATTCTGTGAGTT+TGG | - | chr1.4:85156631-85156650 | MS.gene066067:intron | 45.0% | |
| ! | TTTGATGGACAGGGAATCAG+AGG | - | chr1.4:85155617-85155636 | MS.gene066067:intron | 45.0% |
| !! | ATGACCGTTCTCTCTGAGAT+CGG | - | chr1.4:85154401-85154420 | MS.gene066067:CDS | 45.0% |
| AACCCATTTGGCGTGGTTCT+TGG | - | chr1.4:85156612-85156631 | MS.gene066067:intron | 50.0% | |
| ACTTCTGCTGCTGTTATCGG+AGG | - | chr1.4:85156926-85156945 | MS.gene066067:CDS | 50.0% | |
| ATCTGAGCTGAGGTAGCTTG+AGG | + | chr1.4:85154497-85154516 | None:intergenic | 50.0% | |
| CAGTCCCTTAAGACGATGTG+CGG | - | chr1.4:85155891-85155910 | MS.gene066067:CDS | 50.0% | |
| CATTTGGCGTGGTTCTTGGA+GGG | - | chr1.4:85156616-85156635 | MS.gene066067:intron | 50.0% | |
| CGAGGCAACCTGTTAAGACA+AGG | + | chr1.4:85154990-85155009 | None:intergenic | 50.0% | |
| CTCCAAGAACCACGCCAAAT+GGG | + | chr1.4:85156617-85156636 | None:intergenic | 50.0% | |
| CTTCTGCTGCTGTTATCGGA+GGG | - | chr1.4:85156927-85156946 | MS.gene066067:CDS | 50.0% | |
| GATCTCAGAGAGAACGGTCA+TGG | + | chr1.4:85154402-85154421 | None:intergenic | 50.0% | |
| GGCTGAAGTTGAAGCTGAAC+TGG | - | chr1.4:85155644-85155663 | MS.gene066067:intron | 50.0% | |
| !! | CTGTTAAGACAAGGCGTCGT+GGG | + | chr1.4:85154981-85155000 | None:intergenic | 50.0% |
| CCACGACGCCTTGTCTTAAC+AGG | - | chr1.4:85154979-85154998 | MS.gene066067:intron | 55.0% | |
| CCATTTGGCGTGGTTCTTGG+AGG | - | chr1.4:85156615-85156634 | MS.gene066067:intron | 55.0% | |
| CCTCCAAGAACCACGCCAAA+TGG | + | chr1.4:85156618-85156637 | None:intergenic | 55.0% | |
| GGACAGGGAATCAGAGGAGT+TGG | - | chr1.4:85155623-85155642 | MS.gene066067:intron | 55.0% | |
| TGGTTGGGCTGCTCCAAATC+TGG | - | chr1.4:85155169-85155188 | MS.gene066067:intron | 55.0% | |
| !! | CCTGTTAAGACAAGGCGTCG+TGG | + | chr1.4:85154982-85155001 | None:intergenic | 55.0% |
| AATGGGGGGTGACAAGAGCC+AGG | - | chr1.4:85156465-85156484 | MS.gene066067:intron | 60.0% | |
| GGGGTGACAAGAGCCAGGTA+AGG | - | chr1.4:85156470-85156489 | MS.gene066067:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 85154380 | 85156982 | 85154380 | ID=MS.gene066067 |
| chr1.4 | mRNA | 85154380 | 85156982 | 85154380 | ID=MS.gene066067.t1;Parent=MS.gene066067 |
| chr1.4 | exon | 85156914 | 85156982 | 85156914 | ID=MS.gene066067.t1.exon1;Parent=MS.gene066067.t1 |
| chr1.4 | CDS | 85156914 | 85156982 | 85156914 | ID=cds.MS.gene066067.t1;Parent=MS.gene066067.t1 |
| chr1.4 | exon | 85156342 | 85156401 | 85156342 | ID=MS.gene066067.t1.exon2;Parent=MS.gene066067.t1 |
| chr1.4 | CDS | 85156342 | 85156401 | 85156342 | ID=cds.MS.gene066067.t1;Parent=MS.gene066067.t1 |
| chr1.4 | exon | 85156152 | 85156219 | 85156152 | ID=MS.gene066067.t1.exon3;Parent=MS.gene066067.t1 |
| chr1.4 | CDS | 85156152 | 85156219 | 85156152 | ID=cds.MS.gene066067.t1;Parent=MS.gene066067.t1 |
| chr1.4 | exon | 85155848 | 85155937 | 85155848 | ID=MS.gene066067.t1.exon4;Parent=MS.gene066067.t1 |
| chr1.4 | CDS | 85155848 | 85155937 | 85155848 | ID=cds.MS.gene066067.t1;Parent=MS.gene066067.t1 |
| chr1.4 | exon | 85155697 | 85155733 | 85155697 | ID=MS.gene066067.t1.exon5;Parent=MS.gene066067.t1 |
| chr1.4 | CDS | 85155697 | 85155733 | 85155697 | ID=cds.MS.gene066067.t1;Parent=MS.gene066067.t1 |
| chr1.4 | exon | 85155010 | 85155078 | 85155010 | ID=MS.gene066067.t1.exon6;Parent=MS.gene066067.t1 |
| chr1.4 | CDS | 85155010 | 85155078 | 85155010 | ID=cds.MS.gene066067.t1;Parent=MS.gene066067.t1 |
| chr1.4 | exon | 85154890 | 85154922 | 85154890 | ID=MS.gene066067.t1.exon7;Parent=MS.gene066067.t1 |
| chr1.4 | CDS | 85154890 | 85154922 | 85154890 | ID=cds.MS.gene066067.t1;Parent=MS.gene066067.t1 |
| chr1.4 | exon | 85154719 | 85154780 | 85154719 | ID=MS.gene066067.t1.exon8;Parent=MS.gene066067.t1 |
| chr1.4 | CDS | 85154719 | 85154780 | 85154719 | ID=cds.MS.gene066067.t1;Parent=MS.gene066067.t1 |
| chr1.4 | exon | 85154380 | 85154452 | 85154380 | ID=MS.gene066067.t1.exon9;Parent=MS.gene066067.t1 |
| chr1.4 | CDS | 85154380 | 85154452 | 85154380 | ID=cds.MS.gene066067.t1;Parent=MS.gene066067.t1 |
| Gene Sequence |
| Protein sequence |
