Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63673.t1 | XP_013458768.1 | 85.9 | 248 | 30 | 2 | 4 | 251 | 3 | 245 | 1.50E-102 | 382.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63673.t1 | A0A072V3S7 | 85.9 | 248 | 30 | 2 | 4 | 251 | 3 | 245 | 1.1e-102 | 382.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049424 | MS.gene63673 | 0.832846 | 7.49E-56 | -1.69E-46 |
MS.gene049653 | MS.gene63673 | 0.851791 | 7.05E-61 | -1.69E-46 |
MS.gene049951 | MS.gene63673 | 0.824157 | 9.40E-54 | -1.69E-46 |
MS.gene050105 | MS.gene63673 | 0.813794 | 2.14E-51 | -1.69E-46 |
MS.gene050680 | MS.gene63673 | 0.827208 | 1.78E-54 | -1.69E-46 |
MS.gene050807 | MS.gene63673 | 0.811865 | 5.65E-51 | -1.69E-46 |
MS.gene050987 | MS.gene63673 | 0.839199 | 1.83E-57 | -1.69E-46 |
MS.gene051243 | MS.gene63673 | 0.834667 | 2.63E-56 | -1.69E-46 |
MS.gene051245 | MS.gene63673 | 0.807102 | 5.95E-50 | -1.69E-46 |
MS.gene05134 | MS.gene63673 | 0.808197 | 3.49E-50 | -1.69E-46 |
MS.gene051535 | MS.gene63673 | 0.819948 | 8.88E-53 | -1.69E-46 |
MS.gene052176 | MS.gene63673 | 0.819515 | 1.12E-52 | -1.69E-46 |
MS.gene052286 | MS.gene63673 | 0.815081 | 1.11E-51 | -1.69E-46 |
MS.gene052302 | MS.gene63673 | 0.802087 | 6.63E-49 | -1.69E-46 |
MS.gene052376 | MS.gene63673 | 0.802477 | 5.51E-49 | -1.69E-46 |
MS.gene052426 | MS.gene63673 | 0.827049 | 1.94E-54 | -1.69E-46 |
MS.gene052954 | MS.gene63673 | 0.816611 | 5.06E-52 | -1.69E-46 |
MS.gene053008 | MS.gene63673 | 0.816706 | 4.82E-52 | -1.69E-46 |
MS.gene053188 | MS.gene63673 | 0.828237 | 1.01E-54 | -1.69E-46 |
MS.gene053216 | MS.gene63673 | 0.844463 | 7.44E-59 | -1.69E-46 |
MS.gene053565 | MS.gene63673 | 0.802991 | 4.31E-49 | -1.69E-46 |
MS.gene053931 | MS.gene63673 | 0.804001 | 2.66E-49 | -1.69E-46 |
MS.gene054537 | MS.gene63673 | 0.82865 | 7.99E-55 | -1.69E-46 |
MS.gene054657 | MS.gene63673 | 0.860451 | 2.05E-63 | -1.69E-46 |
MS.gene05510 | MS.gene63673 | 0.861504 | 9.80E-64 | -1.69E-46 |
MS.gene055230 | MS.gene63673 | 0.809941 | 1.48E-50 | -1.69E-46 |
MS.gene055623 | MS.gene63673 | 0.832313 | 1.02E-55 | -1.69E-46 |
MS.gene055701 | MS.gene63673 | 0.823427 | 1.39E-53 | -1.69E-46 |
MS.gene056480 | MS.gene63673 | 0.812194 | 4.79E-51 | -1.69E-46 |
MS.gene056506 | MS.gene63673 | 0.817925 | 2.56E-52 | -1.69E-46 |
MS.gene057047 | MS.gene63673 | 0.806117 | 9.61E-50 | -1.69E-46 |
MS.gene057060 | MS.gene63673 | 0.818126 | 2.31E-52 | -1.69E-46 |
MS.gene057108 | MS.gene63673 | 0.830584 | 2.70E-55 | -1.69E-46 |
MS.gene057109 | MS.gene63673 | 0.826915 | 2.09E-54 | -1.69E-46 |
MS.gene057110 | MS.gene63673 | 0.825517 | 4.49E-54 | -1.69E-46 |
MS.gene057208 | MS.gene63673 | 0.803783 | 2.96E-49 | -1.69E-46 |
MS.gene057392 | MS.gene63673 | 0.827441 | 1.56E-54 | -1.69E-46 |
MS.gene05795 | MS.gene63673 | 0.848438 | 6.13E-60 | -1.69E-46 |
MS.gene058126 | MS.gene63673 | 0.802254 | 6.12E-49 | -1.69E-46 |
MS.gene058595 | MS.gene63673 | 0.812448 | 4.22E-51 | -1.69E-46 |
MS.gene058634 | MS.gene63673 | 0.811151 | 8.08E-51 | -1.69E-46 |
MS.gene059161 | MS.gene63673 | 0.821365 | 4.20E-53 | -1.69E-46 |
MS.gene059317 | MS.gene63673 | 0.861341 | 1.10E-63 | -1.69E-46 |
MS.gene059710 | MS.gene63673 | 0.825229 | 5.25E-54 | -1.69E-46 |
MS.gene060297 | MS.gene63673 | 0.802173 | 6.36E-49 | -1.69E-46 |
MS.gene060322 | MS.gene63673 | 0.837557 | 4.85E-57 | -1.69E-46 |
MS.gene060998 | MS.gene63673 | 0.804995 | 1.65E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63673.t1 | MTR_3g006350 | 90.323 | 248 | 19 | 2 | 4 | 251 | 3 | 245 | 1.67e-118 | 338 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene63673.t1 | AT4G13530 | 49.541 | 109 | 43 | 3 | 146 | 251 | 171 | 270 | 9.30e-28 | 107 |
MS.gene63673.t1 | AT4G13530 | 47.706 | 109 | 44 | 3 | 146 | 251 | 171 | 269 | 3.61e-26 | 103 |
MS.gene63673.t1 | AT4G10080 | 47.222 | 108 | 51 | 2 | 144 | 251 | 224 | 325 | 4.02e-26 | 104 |
Find 50 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCCAACGAGGAAGATTATT+AGG | 0.226770 | 3.3:+1967279 | None:intergenic |
GGCATCGAAACCACCGAAAA+AGG | 0.271341 | 3.3:+1967048 | None:intergenic |
AGAACTACTGGAAATCGAAT+TGG | 0.319373 | 3.3:+1967362 | None:intergenic |
GGTGGAGGAAGAGGGGAAGG+AGG | 0.366973 | 3.3:-1967130 | MS.gene63673:CDS |
AGAATTTGAACTAGAACTAC+TGG | 0.379756 | 3.3:+1967350 | None:intergenic |
TAACCTTGCTCTTGATGATA+AGG | 0.392529 | 3.3:-1966932 | MS.gene63673:intron |
CTTCATCTCATACTCATAAC+AGG | 0.393455 | 3.3:+1963983 | None:intergenic |
TCCAACGAGGAAGATTATTA+GGG | 0.407060 | 3.3:+1967280 | None:intergenic |
GGAATTTGATTAATCTGAAT+CGG | 0.415503 | 3.3:+1967384 | None:intergenic |
TTCGGCGGTGGTGGAGGAAG+AGG | 0.439590 | 3.3:-1967139 | MS.gene63673:CDS |
GCAGCTGCAGCAACAGACAA+AGG | 0.445749 | 3.3:+1967027 | None:intergenic |
TGGTATTGATTCGGCGGTGG+TGG | 0.446978 | 3.3:-1967148 | MS.gene63673:CDS |
GAACTACTGGAAATCGAATT+GGG | 0.452405 | 3.3:+1967363 | None:intergenic |
TGTTGAAAGTGGTATTGATT+CGG | 0.452839 | 3.3:-1967157 | MS.gene63673:CDS |
AAGAAATCGAAGCTGGTGAA+TGG | 0.460369 | 3.3:-1967509 | MS.gene63673:CDS |
GAAGGAGGATGAGAAGAGAT+TGG | 0.468996 | 3.3:-1967115 | MS.gene63673:CDS |
TATTGATTCGGCGGTGGTGG+AGG | 0.476393 | 3.3:-1967145 | MS.gene63673:CDS |
AACGCTAACAACGTCGCTAT+CGG | 0.480370 | 3.3:+1967245 | None:intergenic |
ACCCTAATAATCTTCCTCGT+TGG | 0.489503 | 3.3:-1967281 | MS.gene63673:CDS |
TCGGCGGTGGTGGAGGAAGA+GGG | 0.509828 | 3.3:-1967138 | MS.gene63673:CDS |
AGAAATCGAAGCTGGTGAAT+GGG | 0.512521 | 3.3:-1967508 | MS.gene63673:CDS |
GTAGAAGCAGCTGGAAGAGA+TGG | 0.515825 | 3.3:+1964019 | None:intergenic |
CTGTTATGAGTATGAGATGA+AGG | 0.521354 | 3.3:-1963982 | None:intergenic |
TGTCGGTGTAATTGATGATA+AGG | 0.528085 | 3.3:-1967199 | MS.gene63673:CDS |
GGAAGAGATGGCCGTACCAC+AGG | 0.529983 | 3.3:+1964031 | None:intergenic |
CATTGGAAGTGTTGAAACAT+TGG | 0.536933 | 3.3:-1967077 | MS.gene63673:CDS |
AGAGTTATAGTAGAAGCAGC+TGG | 0.541321 | 3.3:+1964010 | None:intergenic |
TAGGGCTTCTTATATTGGGA+AGG | 0.541352 | 3.3:-1966996 | MS.gene63673:CDS |
ATGAGAAGAGATTGGTGTGG+TGG | 0.547065 | 3.3:-1967107 | MS.gene63673:CDS |
GGTGGTGGAGGAAGAGGGGA+AGG | 0.547169 | 3.3:-1967133 | MS.gene63673:CDS |
ATTGGAAGTGTTGAAACATT+GGG | 0.555110 | 3.3:-1967076 | MS.gene63673:CDS |
GCAGAAGGTATCTCAGCTCA+AGG | 0.556362 | 3.3:-1964101 | MS.gene63673:intron |
CAATGTTTCAACACTTCCAA+TGG | 0.558000 | 3.3:+1967078 | None:intergenic |
AACGAAGAAGAAATCGAAGC+TGG | 0.569736 | 3.3:-1967516 | MS.gene63673:CDS |
GATGATGAGGTTGTTGAAAG+TGG | 0.576993 | 3.3:-1967168 | MS.gene63673:CDS |
CGGCGGTGGTGGAGGAAGAG+GGG | 0.591095 | 3.3:-1967137 | MS.gene63673:CDS |
TAAGGTGGTTGTTGATGATG+AGG | 0.605001 | 3.3:-1967181 | MS.gene63673:CDS |
GTTGCTAACAACGTCGCTGT+CGG | 0.607836 | 3.3:-1967216 | MS.gene63673:CDS |
GGTGTGGTGGAAGGTACCAT+TGG | 0.609486 | 3.3:-1967094 | MS.gene63673:CDS |
GAAGAGATTGGTGTGGTGGA+AGG | 0.610983 | 3.3:-1967103 | MS.gene63673:CDS |
AAGTGGTATTGATTCGGCGG+TGG | 0.616167 | 3.3:-1967151 | MS.gene63673:CDS |
TGACCTTATCATCAAGAGCA+AGG | 0.618665 | 3.3:+1966929 | None:intergenic |
TGAGACGCATTCCTGTGGTA+CGG | 0.626161 | 3.3:-1964042 | MS.gene63673:CDS |
CAGAAGGTATCTCAGCTCAA+GGG | 0.640337 | 3.3:-1964100 | MS.gene63673:CDS |
CGGTGTAATTGATGATAAGG+TGG | 0.657270 | 3.3:-1967196 | MS.gene63673:CDS |
AGTAGTGAGACGCATTCCTG+TGG | 0.658009 | 3.3:-1964047 | MS.gene63673:CDS |
TGAAAGTGGTATTGATTCGG+CGG | 0.681398 | 3.3:-1967154 | MS.gene63673:CDS |
CTGCTTCTACTATAACTCTG+AGG | 0.707236 | 3.3:-1964006 | MS.gene63673:CDS |
AGGATGAGAAGAGATTGGTG+TGG | 0.742642 | 3.3:-1967110 | MS.gene63673:CDS |
GAATCAGAATCATTCCAACG+AGG | 0.813094 | 3.3:+1967267 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACTTATATTTAAACTTTAAA+AGG | + | chr3.3:1965476-1965495 | None:intergenic | 10.0% |
!!! | AAGAATTTTGATTATTAATT+TGG | - | chr3.3:1965774-1965793 | MS.gene63673:intron | 10.0% |
!!! | ATTTTCTCATATTATATTAT+TGG | + | chr3.3:1965066-1965085 | None:intergenic | 10.0% |
!!! | TATTTATCGTTTTTAAATTA+TGG | - | chr3.3:1964836-1964855 | MS.gene63673:intron | 10.0% |
!! | AATTATTTCACTTATTCTTA+TGG | - | chr3.3:1966203-1966222 | MS.gene63673:intron | 15.0% |
!! | ATAAATATATGATGAGATAA+GGG | + | chr3.3:1965890-1965909 | None:intergenic | 15.0% |
!! | TAAGAATAAGTGAAATAATT+TGG | + | chr3.3:1966203-1966222 | None:intergenic | 15.0% |
!! | TATTCAATCATGTTAATTTA+AGG | - | chr3.3:1965580-1965599 | MS.gene63673:intron | 15.0% |
!! | TGTTGATATTCAATTATAAA+AGG | + | chr3.3:1965961-1965980 | None:intergenic | 15.0% |
!!! | AATTTAAGGTATAGATAAAA+GGG | - | chr3.3:1965594-1965613 | MS.gene63673:intron | 15.0% |
!!! | ATTACTTTAATAAGCTATTT+TGG | + | chr3.3:1965686-1965705 | None:intergenic | 15.0% |
!!! | ATTCATTTTAGAATTGTTTA+TGG | - | chr3.3:1967039-1967058 | MS.gene63673:CDS | 15.0% |
!!! | ATTTCATTTTCTCATATTAT+TGG | + | chr3.3:1965319-1965338 | None:intergenic | 15.0% |
!!! | TAATTTAAGGTATAGATAAA+AGG | - | chr3.3:1965593-1965612 | MS.gene63673:intron | 15.0% |
!! | AACACAAAATTTCAATTTGA+AGG | + | chr3.3:1965210-1965229 | None:intergenic | 20.0% |
!! | CATAAATATATGATGAGATA+AGG | + | chr3.3:1965891-1965910 | None:intergenic | 20.0% |
!! | GAGAACAATAATAAAGTTTA+TGG | - | chr3.3:1965618-1965637 | MS.gene63673:intron | 20.0% |
!! | TACTCAATCTCATTAATTTA+AGG | - | chr3.3:1965723-1965742 | MS.gene63673:intron | 20.0% |
!! | TAGATATTAATCGTGAAAAA+CGG | + | chr3.3:1966622-1966641 | None:intergenic | 20.0% |
!!! | AAATAAACTATTTTCTCTGT+AGG | - | chr3.3:1967065-1967084 | MS.gene63673:CDS | 20.0% |
!!! | ACTTTTAATTTGAAGTGTTA+TGG | - | chr3.3:1964764-1964783 | MS.gene63673:intron | 20.0% |
!!! | ATATTATATTATTGGTGTCT+AGG | + | chr3.3:1965122-1965141 | None:intergenic | 20.0% |
!!! | ATCTCATTAATTTAAGGTTA+AGG | - | chr3.3:1965729-1965748 | MS.gene63673:intron | 20.0% |
!!! | TTAATTTGGTTTGATATGAT+TGG | - | chr3.3:1965788-1965807 | MS.gene63673:intron | 20.0% |
!!! | TTGAACCTAATTTATTTTCA+CGG | + | chr3.3:1966290-1966309 | None:intergenic | 20.0% |
! | AGGTTAAGGTATAGATAAAA+AGG | - | chr3.3:1965743-1965762 | MS.gene63673:intron | 25.0% |
! | AGTATTGCATAAATGATAGA+AGG | - | chr3.3:1965925-1965944 | MS.gene63673:intron | 25.0% |
! | ATTGAATGTAAACACATGAT+TGG | - | chr3.3:1965093-1965112 | MS.gene63673:intron | 25.0% |
! | CAATTATTTGATTAAGAGGT+TGG | - | chr3.3:1966973-1966992 | MS.gene63673:CDS | 25.0% |
! | GGAATTTGATTAATCTGAAT+CGG | + | chr3.3:1964135-1964154 | None:intergenic | 25.0% |
! | TGTTCTCTTCTACTTATTTA+CGG | - | chr3.3:1967178-1967197 | MS.gene63673:CDS | 25.0% |
!! | ACTTATCTACTCAAAAGTAT+AGG | + | chr3.3:1967220-1967239 | None:intergenic | 25.0% |
!! | ATTTTCCTATACTCATTTAG+TGG | - | chr3.3:1966464-1966483 | MS.gene63673:intron | 25.0% |
!! | TCATTTTCTCATATTATTGG+TGG | + | chr3.3:1965316-1965335 | None:intergenic | 25.0% |
!! | TTTCAATTTGAAGGTGTATT+TGG | + | chr3.3:1965201-1965220 | None:intergenic | 25.0% |
!! | TTTCATTTTCATTATCGTTG+TGG | + | chr3.3:1964041-1964060 | None:intergenic | 25.0% |
!! | TTTTCCTTGATTTTATCGTA+TGG | - | chr3.3:1967241-1967260 | MS.gene63673:CDS | 25.0% |
!!! | CAAATTAAAAGTGTTGTTTC+CGG | + | chr3.3:1964756-1964775 | None:intergenic | 25.0% |
!!! | CAATTCTAAAATGAATTCCA+AGG | + | chr3.3:1967035-1967054 | None:intergenic | 25.0% |
!!! | GAATTTTTCAATTCAACGAT+TGG | + | chr3.3:1964066-1964085 | None:intergenic | 25.0% |
!!! | TAAACTTTAAAAGGTACCAT+AGG | + | chr3.3:1965467-1965486 | None:intergenic | 25.0% |
!!! | TTTTTAGGGCTTCTTATATT+GGG | - | chr3.3:1964516-1964535 | MS.gene63673:intron | 25.0% |
AAATAAGGTGTGCCAATTTA+TGG | + | chr3.3:1966495-1966514 | None:intergenic | 30.0% | |
AACACAACACTTGAAATTGA+AGG | + | chr3.3:1965381-1965400 | None:intergenic | 30.0% | |
AACAGAACAAAATTGGATGA+AGG | + | chr3.3:1967162-1967181 | None:intergenic | 30.0% | |
ACAACATTGTTAAGTTTCTG+AGG | - | chr3.3:1967373-1967392 | MS.gene63673:CDS | 30.0% | |
AGAAACTTAACAATGTTGTG+AGG | + | chr3.3:1967372-1967391 | None:intergenic | 30.0% | |
AGAAGAGAACAGAACAAAAT+TGG | + | chr3.3:1967169-1967188 | None:intergenic | 30.0% | |
AGAATTTGAACTAGAACTAC+TGG | + | chr3.3:1964169-1964188 | None:intergenic | 30.0% | |
ATAACAGATATACAGTGGAA+TGG | + | chr3.3:1967120-1967139 | None:intergenic | 30.0% | |
ATATAGTCGTTGCATATGAA+TGG | - | chr3.3:1965413-1965432 | MS.gene63673:intron | 30.0% | |
ATCACCATACGATAAAATCA+AGG | + | chr3.3:1967248-1967267 | None:intergenic | 30.0% | |
ATGTATCACATGTATCACTA+AGG | + | chr3.3:1965027-1965046 | None:intergenic | 30.0% | |
ATGTGAGGAAGAATAAGAAA+CGG | - | chr3.3:1966871-1966890 | MS.gene63673:intron | 30.0% | |
CAAGTGTCAAAACTGAATAT+CGG | + | chr3.3:1966236-1966255 | None:intergenic | 30.0% | |
CTGAAATAACAGATATACAG+TGG | + | chr3.3:1967125-1967144 | None:intergenic | 30.0% | |
GAAATCAGCTAGTGTAAATA+AGG | + | chr3.3:1966510-1966529 | None:intergenic | 30.0% | |
GACTACCGTGAAAATAAATT+AGG | - | chr3.3:1966282-1966301 | MS.gene63673:intron | 30.0% | |
GGGACAATTATTTGATTAAG+AGG | - | chr3.3:1966969-1966988 | MS.gene63673:CDS | 30.0% | |
GTTGGTTATTTGAGTAGTAT+GGG | - | chr3.3:1966991-1967010 | MS.gene63673:CDS | 30.0% | |
GTTTACTTGAGTTTATCCTA+TGG | - | chr3.3:1965448-1965467 | MS.gene63673:intron | 30.0% | |
TAACAGATATACAGTGGAAT+GGG | + | chr3.3:1967119-1967138 | None:intergenic | 30.0% | |
TGTATCACATGTATCACTAA+GGG | + | chr3.3:1965026-1965045 | None:intergenic | 30.0% | |
TTGGTTATTTGAGTAGTATG+GGG | - | chr3.3:1966992-1967011 | MS.gene63673:CDS | 30.0% | |
! | AAGGGACTGTTATTTGATTA+AGG | - | chr3.3:1966948-1966967 | MS.gene63673:CDS | 30.0% |
! | AGGGACTGTTATTTGATTAA+GGG | - | chr3.3:1966949-1966968 | MS.gene63673:CDS | 30.0% |
! | GCATTTTGCAGTATCTTAAA+AGG | + | chr3.3:1966435-1966454 | None:intergenic | 30.0% |
!! | ATTGGAAGTGTTGAAACATT+GGG | - | chr3.3:1964440-1964459 | MS.gene63673:intron | 30.0% |
!! | ATTTGGTTTGATATGATTGG+TGG | - | chr3.3:1965791-1965810 | MS.gene63673:intron | 30.0% |
!! | TGTTGAAAGTGGTATTGATT+CGG | - | chr3.3:1964359-1964378 | MS.gene63673:intron | 30.0% |
!!! | AGGCTATTTTTGGCTTATTT+TGG | - | chr3.3:1965514-1965533 | MS.gene63673:intron | 30.0% |
!!! | GTTTTTAGGGCTTCTTATAT+TGG | - | chr3.3:1964515-1964534 | MS.gene63673:intron | 30.0% |
AAGAAATCAGTCAGCTATAC+TGG | + | chr3.3:1965548-1965567 | None:intergenic | 35.0% | |
AATATGGGGAAGAGAGAAAA+TGG | - | chr3.3:1966906-1966925 | MS.gene63673:intron | 35.0% | |
ACATCATAGACAGTTATGCA+AGG | + | chr3.3:1966661-1966680 | None:intergenic | 35.0% | |
ACGGAGGACAAATGATAATA+TGG | - | chr3.3:1966890-1966909 | MS.gene63673:intron | 35.0% | |
ACTGTCTATGATGTCTATAG+TGG | - | chr3.3:1966667-1966686 | MS.gene63673:intron | 35.0% | |
AGAACTACTGGAAATCGAAT+TGG | + | chr3.3:1964157-1964176 | None:intergenic | 35.0% | |
ATAACAGAGAAGAGAGAGAA+AGG | - | chr3.3:1966826-1966845 | MS.gene63673:intron | 35.0% | |
ATAAGCACATATCCCAAATG+AGG | - | chr3.3:1966709-1966728 | MS.gene63673:intron | 35.0% | |
ATATGGGGAAGAGAGAAAAT+GGG | - | chr3.3:1966907-1966926 | MS.gene63673:intron | 35.0% | |
CAATGTTTCAACACTTCCAA+TGG | + | chr3.3:1964441-1964460 | None:intergenic | 35.0% | |
CATCATAGACAGTTATGCAA+GGG | + | chr3.3:1966660-1966679 | None:intergenic | 35.0% | |
CGGAGGACAAATGATAATAT+GGG | - | chr3.3:1966891-1966910 | MS.gene63673:intron | 35.0% | |
GAACTACTGGAAATCGAATT+GGG | + | chr3.3:1964156-1964175 | None:intergenic | 35.0% | |
GACTGATCTTCAGTAAAAGA+AGG | - | chr3.3:1966394-1966413 | MS.gene63673:intron | 35.0% | |
GATATGTGCTTATGTGGTTT+AGG | + | chr3.3:1966702-1966721 | None:intergenic | 35.0% | |
GGAGGACAAATGATAATATG+GGG | - | chr3.3:1966892-1966911 | MS.gene63673:intron | 35.0% | |
GGTGTATTGCAATATGGAAT+TGG | + | chr3.3:1966542-1966561 | None:intergenic | 35.0% | |
GTCTCTTCTTACTGAATTAC+AGG | + | chr3.3:1966175-1966194 | None:intergenic | 35.0% | |
GTGATACATGTGATACATAG+CGG | - | chr3.3:1965029-1965048 | MS.gene63673:intron | 35.0% | |
TAACAGAGAAGAGAGAGAAA+GGG | - | chr3.3:1966827-1966846 | MS.gene63673:intron | 35.0% | |
TCCAACGAGGAAGATTATTA+GGG | + | chr3.3:1964239-1964258 | None:intergenic | 35.0% | |
TGACTGTCATAGTAGTTGAT+TGG | - | chr3.3:1966135-1966154 | MS.gene63673:intron | 35.0% | |
TGGTTATTTGAGTAGTATGG+GGG | - | chr3.3:1966993-1967012 | MS.gene63673:CDS | 35.0% | |
TTAAAAGGCTCAACTGATCA+TGG | + | chr3.3:1966420-1966439 | None:intergenic | 35.0% | |
TTCCAACGAGGAAGATTATT+AGG | + | chr3.3:1964240-1964259 | None:intergenic | 35.0% | |
! | ACATTGGGTGAATCCTTTTT+CGG | - | chr3.3:1964455-1964474 | MS.gene63673:intron | 35.0% |
! | AGAGCAAAGTGTCATCTAAT+CGG | - | chr3.3:1966001-1966020 | MS.gene63673:intron | 35.0% |
! | ATTTGGGATATGTGCTTATG+TGG | + | chr3.3:1966708-1966727 | None:intergenic | 35.0% |
! | CTTGAAATTGAAGGCGTATT+TGG | + | chr3.3:1965372-1965391 | None:intergenic | 35.0% |
! | CTTGTAACAATTTTCGCAGA+AGG | - | chr3.3:1967400-1967419 | MS.gene63673:CDS | 35.0% |
! | GGTTGGTTATTTGAGTAGTA+TGG | - | chr3.3:1966990-1967009 | MS.gene63673:CDS | 35.0% |
! | TAACCTTGCTCTTGATGATA+AGG | - | chr3.3:1964584-1964603 | MS.gene63673:intron | 35.0% |
! | TACACTAGCTGATTTCAATC+TGG | - | chr3.3:1966514-1966533 | MS.gene63673:intron | 35.0% |
! | TGGTTTTCAACATGTATCAG+AGG | + | chr3.3:1965181-1965200 | None:intergenic | 35.0% |
! | TGTCGGTGTAATTGATGATA+AGG | - | chr3.3:1964317-1964336 | MS.gene63673:intron | 35.0% |
!! | CATTGGAAGTGTTGAAACAT+TGG | - | chr3.3:1964439-1964458 | MS.gene63673:intron | 35.0% |
AACGAAGAAGAAATCGAAGC+TGG | - | chr3.3:1964000-1964019 | MS.gene63673:CDS | 40.0% | |
AAGAAATCGAAGCTGGTGAA+TGG | - | chr3.3:1964007-1964026 | MS.gene63673:CDS | 40.0% | |
AAGGCGTATTTGGTTGTGAA+TGG | + | chr3.3:1965362-1965381 | None:intergenic | 40.0% | |
AAGTAGATCACCTGTCATCA+GGG | - | chr3.3:1966328-1966347 | MS.gene63673:intron | 40.0% | |
ACACTTTGCTCTCTGTTTAG+CGG | + | chr3.3:1965993-1966012 | None:intergenic | 40.0% | |
ACATATCCCAAATGAGGACA+CGG | - | chr3.3:1966715-1966734 | MS.gene63673:intron | 40.0% | |
ACCCTAATAATCTTCCTCGT+TGG | - | chr3.3:1964235-1964254 | MS.gene63673:intron | 40.0% | |
AGAAATCGAAGCTGGTGAAT+GGG | - | chr3.3:1964008-1964027 | MS.gene63673:CDS | 40.0% | |
AGAGTTATAGTAGAAGCAGC+TGG | + | chr3.3:1967509-1967528 | None:intergenic | 40.0% | |
AGATACTGCAAAATGCACTC+TGG | - | chr3.3:1966439-1966458 | MS.gene63673:intron | 40.0% | |
ATGACAGGTGATCTACTTCA+GGG | + | chr3.3:1966326-1966345 | None:intergenic | 40.0% | |
CATATGTGTCAGAATGACAC+CGG | - | chr3.3:1964734-1964753 | MS.gene63673:intron | 40.0% | |
CATGGCCACTAAATGAGTAT+AGG | + | chr3.3:1966472-1966491 | None:intergenic | 40.0% | |
CGAGGAACAATAAGAAACAG+AGG | - | chr3.3:1966796-1966815 | MS.gene63673:intron | 40.0% | |
CTGCTTCTACTATAACTCTG+AGG | - | chr3.3:1967510-1967529 | MS.gene63673:CDS | 40.0% | |
GAATCAGAATCATTCCAACG+AGG | + | chr3.3:1964252-1964271 | None:intergenic | 40.0% | |
GAGTGAGTGAAAAGTTACCT+TGG | - | chr3.3:1967015-1967034 | MS.gene63673:CDS | 40.0% | |
GATGATGAGGTTGTTGAAAG+TGG | - | chr3.3:1964348-1964367 | MS.gene63673:intron | 40.0% | |
GTTTATGATGACATGTGCGA+AGG | - | chr3.3:1965494-1965513 | MS.gene63673:intron | 40.0% | |
TACAGTAGAATGACAGCTGA+GGG | - | chr3.3:1966567-1966586 | MS.gene63673:intron | 40.0% | |
TAGGGCTTCTTATATTGGGA+AGG | - | chr3.3:1964520-1964539 | MS.gene63673:intron | 40.0% | |
TCAGCTGTCATTCTACTGTA+GGG | + | chr3.3:1966567-1966586 | None:intergenic | 40.0% | |
TCGGAGAGGCTTAATATATC+TGG | - | chr3.3:1966020-1966039 | MS.gene63673:intron | 40.0% | |
TGACCTTATCATCAAGAGCA+AGG | + | chr3.3:1964590-1964609 | None:intergenic | 40.0% | |
TGAGGAAGAATAAGAAACGG+AGG | - | chr3.3:1966874-1966893 | MS.gene63673:intron | 40.0% | |
TGTGTTTGGATTGAGGGTTT+AGG | + | chr3.3:1965003-1965022 | None:intergenic | 40.0% | |
TTAGTGGCCATGCCATAAAT+TGG | - | chr3.3:1966480-1966499 | MS.gene63673:intron | 40.0% | |
TTTGGATTGAGGGTTTAGGA+GGG | + | chr3.3:1964999-1965018 | None:intergenic | 40.0% | |
! | AAAGTGTCATCTAATCGGAG+AGG | - | chr3.3:1966006-1966025 | MS.gene63673:intron | 40.0% |
! | AGGTATTTTGCGATGCCAAT+TGG | + | chr3.3:1966362-1966381 | None:intergenic | 40.0% |
! | CGGTGTAATTGATGATAAGG+TGG | - | chr3.3:1964320-1964339 | MS.gene63673:intron | 40.0% |
! | GATCAGTCACATCGTTTTAC+AGG | + | chr3.3:1966382-1966401 | None:intergenic | 40.0% |
! | GGTATTTTGCGATGCCAATT+GGG | + | chr3.3:1966361-1966380 | None:intergenic | 40.0% |
! | TAAGGGTGTGTTTGGATTGA+GGG | + | chr3.3:1965009-1965028 | None:intergenic | 40.0% |
! | TGAAGTGTTATGGCGTGTTT+GGG | - | chr3.3:1964774-1964793 | MS.gene63673:intron | 40.0% |
! | TGTATCACTAAGGGTGTGTT+TGG | + | chr3.3:1965017-1965036 | None:intergenic | 40.0% |
! | TTGAAGTGTTATGGCGTGTT+TGG | - | chr3.3:1964773-1964792 | MS.gene63673:intron | 40.0% |
!! | AAAGGCACTAAGAAATGTGC+TGG | + | chr3.3:1967278-1967297 | None:intergenic | 40.0% |
!! | ACATGTGCGAAGGCTATTTT+TGG | - | chr3.3:1965504-1965523 | MS.gene63673:intron | 40.0% |
!! | TAAGGTGGTTGTTGATGATG+AGG | - | chr3.3:1964335-1964354 | MS.gene63673:intron | 40.0% |
!! | TGAAAGTGGTATTGATTCGG+CGG | - | chr3.3:1964362-1964381 | MS.gene63673:intron | 40.0% |
AACGCTAACAACGTCGCTAT+CGG | + | chr3.3:1964274-1964293 | None:intergenic | 45.0% | |
AACGGTGCCTACAGCATTTA+TGG | + | chr3.3:1966604-1966623 | None:intergenic | 45.0% | |
AGAGAAGAGAGAGAAAGGGA+TGG | - | chr3.3:1966831-1966850 | MS.gene63673:intron | 45.0% | |
AGGATGAGAAGAGATTGGTG+TGG | - | chr3.3:1964406-1964425 | MS.gene63673:intron | 45.0% | |
AGGGCAGGTGTATTGCAATA+TGG | + | chr3.3:1966548-1966567 | None:intergenic | 45.0% | |
AGGTGTGCCAATTTATGGCA+TGG | + | chr3.3:1966490-1966509 | None:intergenic | 45.0% | |
ATATCCCAAATGAGGACACG+GGG | - | chr3.3:1966717-1966736 | MS.gene63673:intron | 45.0% | |
ATCAGGGTCAGATTCCCAAT+TGG | - | chr3.3:1966344-1966363 | MS.gene63673:intron | 45.0% | |
ATGAGAAGAGATTGGTGTGG+TGG | - | chr3.3:1964409-1964428 | MS.gene63673:intron | 45.0% | |
ATTTGCTCTTGTGGACAGCA+GGG | - | chr3.3:1967091-1967110 | MS.gene63673:CDS | 45.0% | |
CACAATCCTGTTCACAGACA+AGG | + | chr3.3:1966096-1966115 | None:intergenic | 45.0% | |
CATATCCCAAATGAGGACAC+GGG | - | chr3.3:1966716-1966735 | MS.gene63673:intron | 45.0% | |
CCATGTGCCATAAATGCTGT+AGG | - | chr3.3:1966594-1966613 | MS.gene63673:intron | 45.0% | |
CCTACAGCATTTATGGCACA+TGG | + | chr3.3:1966597-1966616 | None:intergenic | 45.0% | |
CGGCTGAACATGTCTCAAAA+AGG | + | chr3.3:1967296-1967315 | None:intergenic | 45.0% | |
CTACAGTAGAATGACAGCTG+AGG | - | chr3.3:1966566-1966585 | MS.gene63673:intron | 45.0% | |
CTCAGCTGTCATTCTACTGT+AGG | + | chr3.3:1966568-1966587 | None:intergenic | 45.0% | |
GAAGGAGGATGAGAAGAGAT+TGG | - | chr3.3:1964401-1964420 | MS.gene63673:intron | 45.0% | |
GAAGTAGATCACCTGTCATC+AGG | - | chr3.3:1966327-1966346 | MS.gene63673:intron | 45.0% | |
GAGAAGAGAGAGAAAGGGAT+GGG | - | chr3.3:1966832-1966851 | MS.gene63673:intron | 45.0% | |
GATGACAGGTGATCTACTTC+AGG | + | chr3.3:1966327-1966346 | None:intergenic | 45.0% | |
GCATACACTCTTCACACTGT+GGG | + | chr3.3:1966777-1966796 | None:intergenic | 45.0% | |
GTTTGGATTGAGGGTTTAGG+AGG | + | chr3.3:1965000-1965019 | None:intergenic | 45.0% | |
TAGTATACGAGTCACAGCCA+GGG | - | chr3.3:1966058-1966077 | MS.gene63673:intron | 45.0% | |
TCAACAAAAGCAGCCGTCAA+CGG | + | chr3.3:1967316-1967335 | None:intergenic | 45.0% | |
TTAGTATACGAGTCACAGCC+AGG | - | chr3.3:1966057-1966076 | MS.gene63673:intron | 45.0% | |
TTGGATTGAGGGTTTAGGAG+GGG | + | chr3.3:1964998-1965017 | None:intergenic | 45.0% | |
TTTGGGTGGAGGGTTTAAGA+GGG | - | chr3.3:1964791-1964810 | MS.gene63673:intron | 45.0% | |
! | ATCGAGGTCATGGACTTTTG+TGG | + | chr3.3:1965270-1965289 | None:intergenic | 45.0% |
! | CTAAGGGTGTGTTTGGATTG+AGG | + | chr3.3:1965010-1965029 | None:intergenic | 45.0% |
!! | CAAGGTGCTGAATAAATCCC+TGG | + | chr3.3:1966078-1966097 | None:intergenic | 45.0% |
!! | CAGAAGGTATCTCAGCTCAA+GGG | - | chr3.3:1967416-1967435 | MS.gene63673:CDS | 45.0% |
!! | GTGATACATAGCGGACACAT+AGG | - | chr3.3:1965038-1965057 | MS.gene63673:intron | 45.0% |
!! | TGTAGGAGCATTTGCTCTTG+TGG | - | chr3.3:1967082-1967101 | MS.gene63673:CDS | 45.0% |
!!! | TTGGGTGAATCCTTTTTCGG+TGG | - | chr3.3:1964458-1964477 | MS.gene63673:intron | 45.0% |
AGTAGTGAGACGCATTCCTG+TGG | - | chr3.3:1967469-1967488 | MS.gene63673:CDS | 50.0% | |
AGTGTTATGGCGTGTTTGGG+TGG | - | chr3.3:1964777-1964796 | MS.gene63673:intron | 50.0% | |
CATTTGCTCTTGTGGACAGC+AGG | - | chr3.3:1967090-1967109 | MS.gene63673:CDS | 50.0% | |
CGCATACACTCTTCACACTG+TGG | + | chr3.3:1966778-1966797 | None:intergenic | 50.0% | |
CTGTCATTCTACTGTAGGGC+AGG | + | chr3.3:1966563-1966582 | None:intergenic | 50.0% | |
GAGACATGTTCAGCCGTTGA+CGG | - | chr3.3:1967300-1967319 | MS.gene63673:CDS | 50.0% | |
GGGAAGAGAGAAAATGGGAC+GGG | - | chr3.3:1966912-1966931 | MS.gene63673:intron | 50.0% | |
GGGGAAGAGAGAAAATGGGA+CGG | - | chr3.3:1966911-1966930 | MS.gene63673:intron | 50.0% | |
GGTTTAAGAGGGGAAGGGAA+GGG | - | chr3.3:1964802-1964821 | MS.gene63673:intron | 50.0% | |
GTAGAAGCAGCTGGAAGAGA+TGG | + | chr3.3:1967500-1967519 | None:intergenic | 50.0% | |
GTGAACAGGATTGTGACACG+AGG | - | chr3.3:1966101-1966120 | MS.gene63673:intron | 50.0% | |
GTGACTATGCATCGAGGTCA+TGG | + | chr3.3:1965280-1965299 | None:intergenic | 50.0% | |
GTGTCAGTGACTATGCATCG+AGG | + | chr3.3:1965286-1965305 | None:intergenic | 50.0% | |
GTTGCTAACAACGTCGCTGT+CGG | - | chr3.3:1964300-1964319 | MS.gene63673:intron | 50.0% | |
GTTTGGGTGGAGGGTTTAAG+AGG | - | chr3.3:1964790-1964809 | MS.gene63673:intron | 50.0% | |
TCAGCACCTTGTCTGTGAAC+AGG | - | chr3.3:1966087-1966106 | MS.gene63673:intron | 50.0% | |
TGAGACGCATTCCTGTGGTA+CGG | - | chr3.3:1967474-1967493 | MS.gene63673:CDS | 50.0% | |
TGGAGGGTTTAAGAGGGGAA+GGG | - | chr3.3:1964797-1964816 | MS.gene63673:intron | 50.0% | |
TGGATTGAGGGTTTAGGAGG+GGG | + | chr3.3:1964997-1965016 | None:intergenic | 50.0% | |
TGGGCTGCAGACTTGCAATT+GGG | + | chr3.3:1966752-1966771 | None:intergenic | 50.0% | |
TTATGGCGTGTTTGGGTGGA+GGG | - | chr3.3:1964781-1964800 | MS.gene63673:intron | 50.0% | |
TTCGTGTCAGTGTCGTGTCT+TGG | + | chr3.3:1964668-1964687 | None:intergenic | 50.0% | |
TTGGGTGGAGGGTTTAAGAG+GGG | - | chr3.3:1964792-1964811 | MS.gene63673:intron | 50.0% | |
! | AGCAGTCTGGAGTGTATGTG+AGG | - | chr3.3:1966856-1966875 | MS.gene63673:intron | 50.0% |
! | CAGTGTGAAGAGTGTATGCG+AGG | - | chr3.3:1966778-1966797 | MS.gene63673:intron | 50.0% |
! | CTGCAGCTGCTGCGTTTTTA+GGG | - | chr3.3:1964502-1964521 | MS.gene63673:intron | 50.0% |
! | GAAGAGATTGGTGTGGTGGA+AGG | - | chr3.3:1964413-1964432 | MS.gene63673:intron | 50.0% |
! | GGCATCGAAACCACCGAAAA+AGG | + | chr3.3:1964471-1964490 | None:intergenic | 50.0% |
!! | AAGTGGTATTGATTCGGCGG+TGG | - | chr3.3:1964365-1964384 | MS.gene63673:intron | 50.0% |
!! | GCAGAAGGTATCTCAGCTCA+AGG | - | chr3.3:1967415-1967434 | MS.gene63673:CDS | 50.0% |
ACTCTTCACACTGTGGGCCT+GGG | + | chr3.3:1966771-1966790 | None:intergenic | 55.0% | |
AGAGCCCCGTGTCCTCATTT+GGG | + | chr3.3:1966724-1966743 | None:intergenic | 55.0% | |
ATTGAGGGTTTAGGAGGGGG+AGG | + | chr3.3:1964994-1965013 | None:intergenic | 55.0% | |
CAATTGCAAGTCTGCAGCCC+AGG | - | chr3.3:1966751-1966770 | MS.gene63673:intron | 55.0% | |
CTGGGCTGCAGACTTGCAAT+TGG | + | chr3.3:1966753-1966772 | None:intergenic | 55.0% | |
GCAGCTGCAGCAACAGACAA+AGG | + | chr3.3:1964492-1964511 | None:intergenic | 55.0% | |
GGGAATCTGACCCTGATGAC+AGG | + | chr3.3:1966341-1966360 | None:intergenic | 55.0% | |
GGGTTTAAGAGGGGAAGGGA+AGG | - | chr3.3:1964801-1964820 | MS.gene63673:intron | 55.0% | |
GTGGAGGGTTTAAGAGGGGA+AGG | - | chr3.3:1964796-1964815 | MS.gene63673:intron | 55.0% | |
GTTATGGCGTGTTTGGGTGG+AGG | - | chr3.3:1964780-1964799 | MS.gene63673:intron | 55.0% | |
TAAGAGGGGAAGGGAAGGGA+GGG | - | chr3.3:1964806-1964825 | MS.gene63673:intron | 55.0% | |
TAGAGCCCCGTGTCCTCATT+TGG | + | chr3.3:1966725-1966744 | None:intergenic | 55.0% | |
TTAAGAGGGGAAGGGAAGGG+AGG | - | chr3.3:1964805-1964824 | MS.gene63673:intron | 55.0% | |
TTGAGGGTTTAGGAGGGGGA+GGG | + | chr3.3:1964993-1965012 | None:intergenic | 55.0% | |
! | ACGGGCAGCAGTTGATGCAA+GGG | - | chr3.3:1966930-1966949 | MS.gene63673:intron | 55.0% |
! | GCTGCAGCTGCTGCGTTTTT+AGG | - | chr3.3:1964501-1964520 | MS.gene63673:intron | 55.0% |
!! | GGTGTGGTGGAAGGTACCAT+TGG | - | chr3.3:1964422-1964441 | MS.gene63673:intron | 55.0% |
!! | TATTGATTCGGCGGTGGTGG+AGG | - | chr3.3:1964371-1964390 | MS.gene63673:intron | 55.0% |
!! | TGGTATTGATTCGGCGGTGG+TGG | - | chr3.3:1964368-1964387 | MS.gene63673:intron | 55.0% |
AAGAGGGGAAGGGAAGGGAG+GGG | - | chr3.3:1964807-1964826 | MS.gene63673:intron | 60.0% | |
CACTCTTCACACTGTGGGCC+TGG | + | chr3.3:1966772-1966791 | None:intergenic | 60.0% | |
GAAAGGGATGGGCAGCAGTC+TGG | - | chr3.3:1966843-1966862 | MS.gene63673:intron | 60.0% | |
GGAAGAGATGGCCGTACCAC+AGG | + | chr3.3:1967488-1967507 | None:intergenic | 60.0% | |
! | GACGGGCAGCAGTTGATGCA+AGG | - | chr3.3:1966929-1966948 | MS.gene63673:intron | 60.0% |
GGTGGAGGAAGAGGGGAAGG+AGG | - | chr3.3:1964386-1964405 | MS.gene63673:intron | 65.0% | |
!! | GGTGGTGGAGGAAGAGGGGA+AGG | - | chr3.3:1964383-1964402 | MS.gene63673:intron | 65.0% |
!! | TCGGCGGTGGTGGAGGAAGA+GGG | - | chr3.3:1964378-1964397 | MS.gene63673:intron | 65.0% |
!! | TTCGGCGGTGGTGGAGGAAG+AGG | - | chr3.3:1964377-1964396 | MS.gene63673:intron | 65.0% |
AGGGGAAGGGAAGGGAGGGG+AGG | - | chr3.3:1964810-1964829 | MS.gene63673:intron | 70.0% | |
GGGGAAGGGAAGGGAGGGGA+GGG | - | chr3.3:1964811-1964830 | MS.gene63673:intron | 70.0% | |
!! | CGGCGGTGGTGGAGGAAGAG+GGG | - | chr3.3:1964379-1964398 | MS.gene63673:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 1963985 | 1967553 | 1963985 | ID=MS.gene63673 |
chr3.3 | mRNA | 1963985 | 1967553 | 1963985 | ID=MS.gene63673.t1;Parent=MS.gene63673 |
chr3.3 | exon | 1966933 | 1967553 | 1966933 | ID=MS.gene63673.t1.exon1;Parent=MS.gene63673.t1 |
chr3.3 | CDS | 1966933 | 1967553 | 1966933 | ID=cds.MS.gene63673.t1;Parent=MS.gene63673.t1 |
chr3.3 | exon | 1963985 | 1964119 | 1963985 | ID=MS.gene63673.t1.exon2;Parent=MS.gene63673.t1 |
chr3.3 | CDS | 1963985 | 1964119 | 1963985 | ID=cds.MS.gene63673.t1;Parent=MS.gene63673.t1 |
Gene Sequence |
Protein sequence |