AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63673


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63673.t1 MTR_3g006350 90.323 248 19 2 4 251 3 245 1.67e-118 338
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63673.t1 AT4G13530 49.541 109 43 3 146 251 171 270 9.30e-28 107
MS.gene63673.t1 AT4G13530 47.706 109 44 3 146 251 171 269 3.61e-26 103
MS.gene63673.t1 AT4G10080 47.222 108 51 2 144 251 224 325 4.02e-26 104

Find 50 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAACGAGGAAGATTATT+AGG 0.226770 3.3:+1967279 None:intergenic
GGCATCGAAACCACCGAAAA+AGG 0.271341 3.3:+1967048 None:intergenic
AGAACTACTGGAAATCGAAT+TGG 0.319373 3.3:+1967362 None:intergenic
GGTGGAGGAAGAGGGGAAGG+AGG 0.366973 3.3:-1967130 MS.gene63673:CDS
AGAATTTGAACTAGAACTAC+TGG 0.379756 3.3:+1967350 None:intergenic
TAACCTTGCTCTTGATGATA+AGG 0.392529 3.3:-1966932 MS.gene63673:intron
CTTCATCTCATACTCATAAC+AGG 0.393455 3.3:+1963983 None:intergenic
TCCAACGAGGAAGATTATTA+GGG 0.407060 3.3:+1967280 None:intergenic
GGAATTTGATTAATCTGAAT+CGG 0.415503 3.3:+1967384 None:intergenic
TTCGGCGGTGGTGGAGGAAG+AGG 0.439590 3.3:-1967139 MS.gene63673:CDS
GCAGCTGCAGCAACAGACAA+AGG 0.445749 3.3:+1967027 None:intergenic
TGGTATTGATTCGGCGGTGG+TGG 0.446978 3.3:-1967148 MS.gene63673:CDS
GAACTACTGGAAATCGAATT+GGG 0.452405 3.3:+1967363 None:intergenic
TGTTGAAAGTGGTATTGATT+CGG 0.452839 3.3:-1967157 MS.gene63673:CDS
AAGAAATCGAAGCTGGTGAA+TGG 0.460369 3.3:-1967509 MS.gene63673:CDS
GAAGGAGGATGAGAAGAGAT+TGG 0.468996 3.3:-1967115 MS.gene63673:CDS
TATTGATTCGGCGGTGGTGG+AGG 0.476393 3.3:-1967145 MS.gene63673:CDS
AACGCTAACAACGTCGCTAT+CGG 0.480370 3.3:+1967245 None:intergenic
ACCCTAATAATCTTCCTCGT+TGG 0.489503 3.3:-1967281 MS.gene63673:CDS
TCGGCGGTGGTGGAGGAAGA+GGG 0.509828 3.3:-1967138 MS.gene63673:CDS
AGAAATCGAAGCTGGTGAAT+GGG 0.512521 3.3:-1967508 MS.gene63673:CDS
GTAGAAGCAGCTGGAAGAGA+TGG 0.515825 3.3:+1964019 None:intergenic
CTGTTATGAGTATGAGATGA+AGG 0.521354 3.3:-1963982 None:intergenic
TGTCGGTGTAATTGATGATA+AGG 0.528085 3.3:-1967199 MS.gene63673:CDS
GGAAGAGATGGCCGTACCAC+AGG 0.529983 3.3:+1964031 None:intergenic
CATTGGAAGTGTTGAAACAT+TGG 0.536933 3.3:-1967077 MS.gene63673:CDS
AGAGTTATAGTAGAAGCAGC+TGG 0.541321 3.3:+1964010 None:intergenic
TAGGGCTTCTTATATTGGGA+AGG 0.541352 3.3:-1966996 MS.gene63673:CDS
ATGAGAAGAGATTGGTGTGG+TGG 0.547065 3.3:-1967107 MS.gene63673:CDS
GGTGGTGGAGGAAGAGGGGA+AGG 0.547169 3.3:-1967133 MS.gene63673:CDS
ATTGGAAGTGTTGAAACATT+GGG 0.555110 3.3:-1967076 MS.gene63673:CDS
GCAGAAGGTATCTCAGCTCA+AGG 0.556362 3.3:-1964101 MS.gene63673:intron
CAATGTTTCAACACTTCCAA+TGG 0.558000 3.3:+1967078 None:intergenic
AACGAAGAAGAAATCGAAGC+TGG 0.569736 3.3:-1967516 MS.gene63673:CDS
GATGATGAGGTTGTTGAAAG+TGG 0.576993 3.3:-1967168 MS.gene63673:CDS
CGGCGGTGGTGGAGGAAGAG+GGG 0.591095 3.3:-1967137 MS.gene63673:CDS
TAAGGTGGTTGTTGATGATG+AGG 0.605001 3.3:-1967181 MS.gene63673:CDS
GTTGCTAACAACGTCGCTGT+CGG 0.607836 3.3:-1967216 MS.gene63673:CDS
GGTGTGGTGGAAGGTACCAT+TGG 0.609486 3.3:-1967094 MS.gene63673:CDS
GAAGAGATTGGTGTGGTGGA+AGG 0.610983 3.3:-1967103 MS.gene63673:CDS
AAGTGGTATTGATTCGGCGG+TGG 0.616167 3.3:-1967151 MS.gene63673:CDS
TGACCTTATCATCAAGAGCA+AGG 0.618665 3.3:+1966929 None:intergenic
TGAGACGCATTCCTGTGGTA+CGG 0.626161 3.3:-1964042 MS.gene63673:CDS
CAGAAGGTATCTCAGCTCAA+GGG 0.640337 3.3:-1964100 MS.gene63673:CDS
CGGTGTAATTGATGATAAGG+TGG 0.657270 3.3:-1967196 MS.gene63673:CDS
AGTAGTGAGACGCATTCCTG+TGG 0.658009 3.3:-1964047 MS.gene63673:CDS
TGAAAGTGGTATTGATTCGG+CGG 0.681398 3.3:-1967154 MS.gene63673:CDS
CTGCTTCTACTATAACTCTG+AGG 0.707236 3.3:-1964006 MS.gene63673:CDS
AGGATGAGAAGAGATTGGTG+TGG 0.742642 3.3:-1967110 MS.gene63673:CDS
GAATCAGAATCATTCCAACG+AGG 0.813094 3.3:+1967267 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTATATTTAAACTTTAAA+AGG + chr3.3:1965476-1965495 None:intergenic 10.0%
!!! AAGAATTTTGATTATTAATT+TGG - chr3.3:1965774-1965793 MS.gene63673:intron 10.0%
!!! ATTTTCTCATATTATATTAT+TGG + chr3.3:1965066-1965085 None:intergenic 10.0%
!!! TATTTATCGTTTTTAAATTA+TGG - chr3.3:1964836-1964855 MS.gene63673:intron 10.0%
!! AATTATTTCACTTATTCTTA+TGG - chr3.3:1966203-1966222 MS.gene63673:intron 15.0%
!! ATAAATATATGATGAGATAA+GGG + chr3.3:1965890-1965909 None:intergenic 15.0%
!! TAAGAATAAGTGAAATAATT+TGG + chr3.3:1966203-1966222 None:intergenic 15.0%
!! TATTCAATCATGTTAATTTA+AGG - chr3.3:1965580-1965599 MS.gene63673:intron 15.0%
!! TGTTGATATTCAATTATAAA+AGG + chr3.3:1965961-1965980 None:intergenic 15.0%
!!! AATTTAAGGTATAGATAAAA+GGG - chr3.3:1965594-1965613 MS.gene63673:intron 15.0%
!!! ATTACTTTAATAAGCTATTT+TGG + chr3.3:1965686-1965705 None:intergenic 15.0%
!!! ATTCATTTTAGAATTGTTTA+TGG - chr3.3:1967039-1967058 MS.gene63673:CDS 15.0%
!!! ATTTCATTTTCTCATATTAT+TGG + chr3.3:1965319-1965338 None:intergenic 15.0%
!!! TAATTTAAGGTATAGATAAA+AGG - chr3.3:1965593-1965612 MS.gene63673:intron 15.0%
!! AACACAAAATTTCAATTTGA+AGG + chr3.3:1965210-1965229 None:intergenic 20.0%
!! CATAAATATATGATGAGATA+AGG + chr3.3:1965891-1965910 None:intergenic 20.0%
!! GAGAACAATAATAAAGTTTA+TGG - chr3.3:1965618-1965637 MS.gene63673:intron 20.0%
!! TACTCAATCTCATTAATTTA+AGG - chr3.3:1965723-1965742 MS.gene63673:intron 20.0%
!! TAGATATTAATCGTGAAAAA+CGG + chr3.3:1966622-1966641 None:intergenic 20.0%
!!! AAATAAACTATTTTCTCTGT+AGG - chr3.3:1967065-1967084 MS.gene63673:CDS 20.0%
!!! ACTTTTAATTTGAAGTGTTA+TGG - chr3.3:1964764-1964783 MS.gene63673:intron 20.0%
!!! ATATTATATTATTGGTGTCT+AGG + chr3.3:1965122-1965141 None:intergenic 20.0%
!!! ATCTCATTAATTTAAGGTTA+AGG - chr3.3:1965729-1965748 MS.gene63673:intron 20.0%
!!! TTAATTTGGTTTGATATGAT+TGG - chr3.3:1965788-1965807 MS.gene63673:intron 20.0%
!!! TTGAACCTAATTTATTTTCA+CGG + chr3.3:1966290-1966309 None:intergenic 20.0%
! AGGTTAAGGTATAGATAAAA+AGG - chr3.3:1965743-1965762 MS.gene63673:intron 25.0%
! AGTATTGCATAAATGATAGA+AGG - chr3.3:1965925-1965944 MS.gene63673:intron 25.0%
! ATTGAATGTAAACACATGAT+TGG - chr3.3:1965093-1965112 MS.gene63673:intron 25.0%
! CAATTATTTGATTAAGAGGT+TGG - chr3.3:1966973-1966992 MS.gene63673:CDS 25.0%
! GGAATTTGATTAATCTGAAT+CGG + chr3.3:1964135-1964154 None:intergenic 25.0%
! TGTTCTCTTCTACTTATTTA+CGG - chr3.3:1967178-1967197 MS.gene63673:CDS 25.0%
!! ACTTATCTACTCAAAAGTAT+AGG + chr3.3:1967220-1967239 None:intergenic 25.0%
!! ATTTTCCTATACTCATTTAG+TGG - chr3.3:1966464-1966483 MS.gene63673:intron 25.0%
!! TCATTTTCTCATATTATTGG+TGG + chr3.3:1965316-1965335 None:intergenic 25.0%
!! TTTCAATTTGAAGGTGTATT+TGG + chr3.3:1965201-1965220 None:intergenic 25.0%
!! TTTCATTTTCATTATCGTTG+TGG + chr3.3:1964041-1964060 None:intergenic 25.0%
!! TTTTCCTTGATTTTATCGTA+TGG - chr3.3:1967241-1967260 MS.gene63673:CDS 25.0%
!!! CAAATTAAAAGTGTTGTTTC+CGG + chr3.3:1964756-1964775 None:intergenic 25.0%
!!! CAATTCTAAAATGAATTCCA+AGG + chr3.3:1967035-1967054 None:intergenic 25.0%
!!! GAATTTTTCAATTCAACGAT+TGG + chr3.3:1964066-1964085 None:intergenic 25.0%
!!! TAAACTTTAAAAGGTACCAT+AGG + chr3.3:1965467-1965486 None:intergenic 25.0%
!!! TTTTTAGGGCTTCTTATATT+GGG - chr3.3:1964516-1964535 MS.gene63673:intron 25.0%
AAATAAGGTGTGCCAATTTA+TGG + chr3.3:1966495-1966514 None:intergenic 30.0%
AACACAACACTTGAAATTGA+AGG + chr3.3:1965381-1965400 None:intergenic 30.0%
AACAGAACAAAATTGGATGA+AGG + chr3.3:1967162-1967181 None:intergenic 30.0%
ACAACATTGTTAAGTTTCTG+AGG - chr3.3:1967373-1967392 MS.gene63673:CDS 30.0%
AGAAACTTAACAATGTTGTG+AGG + chr3.3:1967372-1967391 None:intergenic 30.0%
AGAAGAGAACAGAACAAAAT+TGG + chr3.3:1967169-1967188 None:intergenic 30.0%
AGAATTTGAACTAGAACTAC+TGG + chr3.3:1964169-1964188 None:intergenic 30.0%
ATAACAGATATACAGTGGAA+TGG + chr3.3:1967120-1967139 None:intergenic 30.0%
ATATAGTCGTTGCATATGAA+TGG - chr3.3:1965413-1965432 MS.gene63673:intron 30.0%
ATCACCATACGATAAAATCA+AGG + chr3.3:1967248-1967267 None:intergenic 30.0%
ATGTATCACATGTATCACTA+AGG + chr3.3:1965027-1965046 None:intergenic 30.0%
ATGTGAGGAAGAATAAGAAA+CGG - chr3.3:1966871-1966890 MS.gene63673:intron 30.0%
CAAGTGTCAAAACTGAATAT+CGG + chr3.3:1966236-1966255 None:intergenic 30.0%
CTGAAATAACAGATATACAG+TGG + chr3.3:1967125-1967144 None:intergenic 30.0%
GAAATCAGCTAGTGTAAATA+AGG + chr3.3:1966510-1966529 None:intergenic 30.0%
GACTACCGTGAAAATAAATT+AGG - chr3.3:1966282-1966301 MS.gene63673:intron 30.0%
GGGACAATTATTTGATTAAG+AGG - chr3.3:1966969-1966988 MS.gene63673:CDS 30.0%
GTTGGTTATTTGAGTAGTAT+GGG - chr3.3:1966991-1967010 MS.gene63673:CDS 30.0%
GTTTACTTGAGTTTATCCTA+TGG - chr3.3:1965448-1965467 MS.gene63673:intron 30.0%
TAACAGATATACAGTGGAAT+GGG + chr3.3:1967119-1967138 None:intergenic 30.0%
TGTATCACATGTATCACTAA+GGG + chr3.3:1965026-1965045 None:intergenic 30.0%
TTGGTTATTTGAGTAGTATG+GGG - chr3.3:1966992-1967011 MS.gene63673:CDS 30.0%
! AAGGGACTGTTATTTGATTA+AGG - chr3.3:1966948-1966967 MS.gene63673:CDS 30.0%
! AGGGACTGTTATTTGATTAA+GGG - chr3.3:1966949-1966968 MS.gene63673:CDS 30.0%
! GCATTTTGCAGTATCTTAAA+AGG + chr3.3:1966435-1966454 None:intergenic 30.0%
!! ATTGGAAGTGTTGAAACATT+GGG - chr3.3:1964440-1964459 MS.gene63673:intron 30.0%
!! ATTTGGTTTGATATGATTGG+TGG - chr3.3:1965791-1965810 MS.gene63673:intron 30.0%
!! TGTTGAAAGTGGTATTGATT+CGG - chr3.3:1964359-1964378 MS.gene63673:intron 30.0%
!!! AGGCTATTTTTGGCTTATTT+TGG - chr3.3:1965514-1965533 MS.gene63673:intron 30.0%
!!! GTTTTTAGGGCTTCTTATAT+TGG - chr3.3:1964515-1964534 MS.gene63673:intron 30.0%
AAGAAATCAGTCAGCTATAC+TGG + chr3.3:1965548-1965567 None:intergenic 35.0%
AATATGGGGAAGAGAGAAAA+TGG - chr3.3:1966906-1966925 MS.gene63673:intron 35.0%
ACATCATAGACAGTTATGCA+AGG + chr3.3:1966661-1966680 None:intergenic 35.0%
ACGGAGGACAAATGATAATA+TGG - chr3.3:1966890-1966909 MS.gene63673:intron 35.0%
ACTGTCTATGATGTCTATAG+TGG - chr3.3:1966667-1966686 MS.gene63673:intron 35.0%
AGAACTACTGGAAATCGAAT+TGG + chr3.3:1964157-1964176 None:intergenic 35.0%
ATAACAGAGAAGAGAGAGAA+AGG - chr3.3:1966826-1966845 MS.gene63673:intron 35.0%
ATAAGCACATATCCCAAATG+AGG - chr3.3:1966709-1966728 MS.gene63673:intron 35.0%
ATATGGGGAAGAGAGAAAAT+GGG - chr3.3:1966907-1966926 MS.gene63673:intron 35.0%
CAATGTTTCAACACTTCCAA+TGG + chr3.3:1964441-1964460 None:intergenic 35.0%
CATCATAGACAGTTATGCAA+GGG + chr3.3:1966660-1966679 None:intergenic 35.0%
CGGAGGACAAATGATAATAT+GGG - chr3.3:1966891-1966910 MS.gene63673:intron 35.0%
GAACTACTGGAAATCGAATT+GGG + chr3.3:1964156-1964175 None:intergenic 35.0%
GACTGATCTTCAGTAAAAGA+AGG - chr3.3:1966394-1966413 MS.gene63673:intron 35.0%
GATATGTGCTTATGTGGTTT+AGG + chr3.3:1966702-1966721 None:intergenic 35.0%
GGAGGACAAATGATAATATG+GGG - chr3.3:1966892-1966911 MS.gene63673:intron 35.0%
GGTGTATTGCAATATGGAAT+TGG + chr3.3:1966542-1966561 None:intergenic 35.0%
GTCTCTTCTTACTGAATTAC+AGG + chr3.3:1966175-1966194 None:intergenic 35.0%
GTGATACATGTGATACATAG+CGG - chr3.3:1965029-1965048 MS.gene63673:intron 35.0%
TAACAGAGAAGAGAGAGAAA+GGG - chr3.3:1966827-1966846 MS.gene63673:intron 35.0%
TCCAACGAGGAAGATTATTA+GGG + chr3.3:1964239-1964258 None:intergenic 35.0%
TGACTGTCATAGTAGTTGAT+TGG - chr3.3:1966135-1966154 MS.gene63673:intron 35.0%
TGGTTATTTGAGTAGTATGG+GGG - chr3.3:1966993-1967012 MS.gene63673:CDS 35.0%
TTAAAAGGCTCAACTGATCA+TGG + chr3.3:1966420-1966439 None:intergenic 35.0%
TTCCAACGAGGAAGATTATT+AGG + chr3.3:1964240-1964259 None:intergenic 35.0%
! ACATTGGGTGAATCCTTTTT+CGG - chr3.3:1964455-1964474 MS.gene63673:intron 35.0%
! AGAGCAAAGTGTCATCTAAT+CGG - chr3.3:1966001-1966020 MS.gene63673:intron 35.0%
! ATTTGGGATATGTGCTTATG+TGG + chr3.3:1966708-1966727 None:intergenic 35.0%
! CTTGAAATTGAAGGCGTATT+TGG + chr3.3:1965372-1965391 None:intergenic 35.0%
! CTTGTAACAATTTTCGCAGA+AGG - chr3.3:1967400-1967419 MS.gene63673:CDS 35.0%
! GGTTGGTTATTTGAGTAGTA+TGG - chr3.3:1966990-1967009 MS.gene63673:CDS 35.0%
! TAACCTTGCTCTTGATGATA+AGG - chr3.3:1964584-1964603 MS.gene63673:intron 35.0%
! TACACTAGCTGATTTCAATC+TGG - chr3.3:1966514-1966533 MS.gene63673:intron 35.0%
! TGGTTTTCAACATGTATCAG+AGG + chr3.3:1965181-1965200 None:intergenic 35.0%
! TGTCGGTGTAATTGATGATA+AGG - chr3.3:1964317-1964336 MS.gene63673:intron 35.0%
!! CATTGGAAGTGTTGAAACAT+TGG - chr3.3:1964439-1964458 MS.gene63673:intron 35.0%
AACGAAGAAGAAATCGAAGC+TGG - chr3.3:1964000-1964019 MS.gene63673:CDS 40.0%
AAGAAATCGAAGCTGGTGAA+TGG - chr3.3:1964007-1964026 MS.gene63673:CDS 40.0%
AAGGCGTATTTGGTTGTGAA+TGG + chr3.3:1965362-1965381 None:intergenic 40.0%
AAGTAGATCACCTGTCATCA+GGG - chr3.3:1966328-1966347 MS.gene63673:intron 40.0%
ACACTTTGCTCTCTGTTTAG+CGG + chr3.3:1965993-1966012 None:intergenic 40.0%
ACATATCCCAAATGAGGACA+CGG - chr3.3:1966715-1966734 MS.gene63673:intron 40.0%
ACCCTAATAATCTTCCTCGT+TGG - chr3.3:1964235-1964254 MS.gene63673:intron 40.0%
AGAAATCGAAGCTGGTGAAT+GGG - chr3.3:1964008-1964027 MS.gene63673:CDS 40.0%
AGAGTTATAGTAGAAGCAGC+TGG + chr3.3:1967509-1967528 None:intergenic 40.0%
AGATACTGCAAAATGCACTC+TGG - chr3.3:1966439-1966458 MS.gene63673:intron 40.0%
ATGACAGGTGATCTACTTCA+GGG + chr3.3:1966326-1966345 None:intergenic 40.0%
CATATGTGTCAGAATGACAC+CGG - chr3.3:1964734-1964753 MS.gene63673:intron 40.0%
CATGGCCACTAAATGAGTAT+AGG + chr3.3:1966472-1966491 None:intergenic 40.0%
CGAGGAACAATAAGAAACAG+AGG - chr3.3:1966796-1966815 MS.gene63673:intron 40.0%
CTGCTTCTACTATAACTCTG+AGG - chr3.3:1967510-1967529 MS.gene63673:CDS 40.0%
GAATCAGAATCATTCCAACG+AGG + chr3.3:1964252-1964271 None:intergenic 40.0%
GAGTGAGTGAAAAGTTACCT+TGG - chr3.3:1967015-1967034 MS.gene63673:CDS 40.0%
GATGATGAGGTTGTTGAAAG+TGG - chr3.3:1964348-1964367 MS.gene63673:intron 40.0%
GTTTATGATGACATGTGCGA+AGG - chr3.3:1965494-1965513 MS.gene63673:intron 40.0%
TACAGTAGAATGACAGCTGA+GGG - chr3.3:1966567-1966586 MS.gene63673:intron 40.0%
TAGGGCTTCTTATATTGGGA+AGG - chr3.3:1964520-1964539 MS.gene63673:intron 40.0%
TCAGCTGTCATTCTACTGTA+GGG + chr3.3:1966567-1966586 None:intergenic 40.0%
TCGGAGAGGCTTAATATATC+TGG - chr3.3:1966020-1966039 MS.gene63673:intron 40.0%
TGACCTTATCATCAAGAGCA+AGG + chr3.3:1964590-1964609 None:intergenic 40.0%
TGAGGAAGAATAAGAAACGG+AGG - chr3.3:1966874-1966893 MS.gene63673:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + chr3.3:1965003-1965022 None:intergenic 40.0%
TTAGTGGCCATGCCATAAAT+TGG - chr3.3:1966480-1966499 MS.gene63673:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG + chr3.3:1964999-1965018 None:intergenic 40.0%
! AAAGTGTCATCTAATCGGAG+AGG - chr3.3:1966006-1966025 MS.gene63673:intron 40.0%
! AGGTATTTTGCGATGCCAAT+TGG + chr3.3:1966362-1966381 None:intergenic 40.0%
! CGGTGTAATTGATGATAAGG+TGG - chr3.3:1964320-1964339 MS.gene63673:intron 40.0%
! GATCAGTCACATCGTTTTAC+AGG + chr3.3:1966382-1966401 None:intergenic 40.0%
! GGTATTTTGCGATGCCAATT+GGG + chr3.3:1966361-1966380 None:intergenic 40.0%
! TAAGGGTGTGTTTGGATTGA+GGG + chr3.3:1965009-1965028 None:intergenic 40.0%
! TGAAGTGTTATGGCGTGTTT+GGG - chr3.3:1964774-1964793 MS.gene63673:intron 40.0%
! TGTATCACTAAGGGTGTGTT+TGG + chr3.3:1965017-1965036 None:intergenic 40.0%
! TTGAAGTGTTATGGCGTGTT+TGG - chr3.3:1964773-1964792 MS.gene63673:intron 40.0%
!! AAAGGCACTAAGAAATGTGC+TGG + chr3.3:1967278-1967297 None:intergenic 40.0%
!! ACATGTGCGAAGGCTATTTT+TGG - chr3.3:1965504-1965523 MS.gene63673:intron 40.0%
!! TAAGGTGGTTGTTGATGATG+AGG - chr3.3:1964335-1964354 MS.gene63673:intron 40.0%
!! TGAAAGTGGTATTGATTCGG+CGG - chr3.3:1964362-1964381 MS.gene63673:intron 40.0%
AACGCTAACAACGTCGCTAT+CGG + chr3.3:1964274-1964293 None:intergenic 45.0%
AACGGTGCCTACAGCATTTA+TGG + chr3.3:1966604-1966623 None:intergenic 45.0%
AGAGAAGAGAGAGAAAGGGA+TGG - chr3.3:1966831-1966850 MS.gene63673:intron 45.0%
AGGATGAGAAGAGATTGGTG+TGG - chr3.3:1964406-1964425 MS.gene63673:intron 45.0%
AGGGCAGGTGTATTGCAATA+TGG + chr3.3:1966548-1966567 None:intergenic 45.0%
AGGTGTGCCAATTTATGGCA+TGG + chr3.3:1966490-1966509 None:intergenic 45.0%
ATATCCCAAATGAGGACACG+GGG - chr3.3:1966717-1966736 MS.gene63673:intron 45.0%
ATCAGGGTCAGATTCCCAAT+TGG - chr3.3:1966344-1966363 MS.gene63673:intron 45.0%
ATGAGAAGAGATTGGTGTGG+TGG - chr3.3:1964409-1964428 MS.gene63673:intron 45.0%
ATTTGCTCTTGTGGACAGCA+GGG - chr3.3:1967091-1967110 MS.gene63673:CDS 45.0%
CACAATCCTGTTCACAGACA+AGG + chr3.3:1966096-1966115 None:intergenic 45.0%
CATATCCCAAATGAGGACAC+GGG - chr3.3:1966716-1966735 MS.gene63673:intron 45.0%
CCATGTGCCATAAATGCTGT+AGG - chr3.3:1966594-1966613 MS.gene63673:intron 45.0%
CCTACAGCATTTATGGCACA+TGG + chr3.3:1966597-1966616 None:intergenic 45.0%
CGGCTGAACATGTCTCAAAA+AGG + chr3.3:1967296-1967315 None:intergenic 45.0%
CTACAGTAGAATGACAGCTG+AGG - chr3.3:1966566-1966585 MS.gene63673:intron 45.0%
CTCAGCTGTCATTCTACTGT+AGG + chr3.3:1966568-1966587 None:intergenic 45.0%
GAAGGAGGATGAGAAGAGAT+TGG - chr3.3:1964401-1964420 MS.gene63673:intron 45.0%
GAAGTAGATCACCTGTCATC+AGG - chr3.3:1966327-1966346 MS.gene63673:intron 45.0%
GAGAAGAGAGAGAAAGGGAT+GGG - chr3.3:1966832-1966851 MS.gene63673:intron 45.0%
GATGACAGGTGATCTACTTC+AGG + chr3.3:1966327-1966346 None:intergenic 45.0%
GCATACACTCTTCACACTGT+GGG + chr3.3:1966777-1966796 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+AGG + chr3.3:1965000-1965019 None:intergenic 45.0%
TAGTATACGAGTCACAGCCA+GGG - chr3.3:1966058-1966077 MS.gene63673:intron 45.0%
TCAACAAAAGCAGCCGTCAA+CGG + chr3.3:1967316-1967335 None:intergenic 45.0%
TTAGTATACGAGTCACAGCC+AGG - chr3.3:1966057-1966076 MS.gene63673:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG + chr3.3:1964998-1965017 None:intergenic 45.0%
TTTGGGTGGAGGGTTTAAGA+GGG - chr3.3:1964791-1964810 MS.gene63673:intron 45.0%
! ATCGAGGTCATGGACTTTTG+TGG + chr3.3:1965270-1965289 None:intergenic 45.0%
! CTAAGGGTGTGTTTGGATTG+AGG + chr3.3:1965010-1965029 None:intergenic 45.0%
!! CAAGGTGCTGAATAAATCCC+TGG + chr3.3:1966078-1966097 None:intergenic 45.0%
!! CAGAAGGTATCTCAGCTCAA+GGG - chr3.3:1967416-1967435 MS.gene63673:CDS 45.0%
!! GTGATACATAGCGGACACAT+AGG - chr3.3:1965038-1965057 MS.gene63673:intron 45.0%
!! TGTAGGAGCATTTGCTCTTG+TGG - chr3.3:1967082-1967101 MS.gene63673:CDS 45.0%
!!! TTGGGTGAATCCTTTTTCGG+TGG - chr3.3:1964458-1964477 MS.gene63673:intron 45.0%
AGTAGTGAGACGCATTCCTG+TGG - chr3.3:1967469-1967488 MS.gene63673:CDS 50.0%
AGTGTTATGGCGTGTTTGGG+TGG - chr3.3:1964777-1964796 MS.gene63673:intron 50.0%
CATTTGCTCTTGTGGACAGC+AGG - chr3.3:1967090-1967109 MS.gene63673:CDS 50.0%
CGCATACACTCTTCACACTG+TGG + chr3.3:1966778-1966797 None:intergenic 50.0%
CTGTCATTCTACTGTAGGGC+AGG + chr3.3:1966563-1966582 None:intergenic 50.0%
GAGACATGTTCAGCCGTTGA+CGG - chr3.3:1967300-1967319 MS.gene63673:CDS 50.0%
GGGAAGAGAGAAAATGGGAC+GGG - chr3.3:1966912-1966931 MS.gene63673:intron 50.0%
GGGGAAGAGAGAAAATGGGA+CGG - chr3.3:1966911-1966930 MS.gene63673:intron 50.0%
GGTTTAAGAGGGGAAGGGAA+GGG - chr3.3:1964802-1964821 MS.gene63673:intron 50.0%
GTAGAAGCAGCTGGAAGAGA+TGG + chr3.3:1967500-1967519 None:intergenic 50.0%
GTGAACAGGATTGTGACACG+AGG - chr3.3:1966101-1966120 MS.gene63673:intron 50.0%
GTGACTATGCATCGAGGTCA+TGG + chr3.3:1965280-1965299 None:intergenic 50.0%
GTGTCAGTGACTATGCATCG+AGG + chr3.3:1965286-1965305 None:intergenic 50.0%
GTTGCTAACAACGTCGCTGT+CGG - chr3.3:1964300-1964319 MS.gene63673:intron 50.0%
GTTTGGGTGGAGGGTTTAAG+AGG - chr3.3:1964790-1964809 MS.gene63673:intron 50.0%
TCAGCACCTTGTCTGTGAAC+AGG - chr3.3:1966087-1966106 MS.gene63673:intron 50.0%
TGAGACGCATTCCTGTGGTA+CGG - chr3.3:1967474-1967493 MS.gene63673:CDS 50.0%
TGGAGGGTTTAAGAGGGGAA+GGG - chr3.3:1964797-1964816 MS.gene63673:intron 50.0%
TGGATTGAGGGTTTAGGAGG+GGG + chr3.3:1964997-1965016 None:intergenic 50.0%
TGGGCTGCAGACTTGCAATT+GGG + chr3.3:1966752-1966771 None:intergenic 50.0%
TTATGGCGTGTTTGGGTGGA+GGG - chr3.3:1964781-1964800 MS.gene63673:intron 50.0%
TTCGTGTCAGTGTCGTGTCT+TGG + chr3.3:1964668-1964687 None:intergenic 50.0%
TTGGGTGGAGGGTTTAAGAG+GGG - chr3.3:1964792-1964811 MS.gene63673:intron 50.0%
! AGCAGTCTGGAGTGTATGTG+AGG - chr3.3:1966856-1966875 MS.gene63673:intron 50.0%
! CAGTGTGAAGAGTGTATGCG+AGG - chr3.3:1966778-1966797 MS.gene63673:intron 50.0%
! CTGCAGCTGCTGCGTTTTTA+GGG - chr3.3:1964502-1964521 MS.gene63673:intron 50.0%
! GAAGAGATTGGTGTGGTGGA+AGG - chr3.3:1964413-1964432 MS.gene63673:intron 50.0%
! GGCATCGAAACCACCGAAAA+AGG + chr3.3:1964471-1964490 None:intergenic 50.0%
!! AAGTGGTATTGATTCGGCGG+TGG - chr3.3:1964365-1964384 MS.gene63673:intron 50.0%
!! GCAGAAGGTATCTCAGCTCA+AGG - chr3.3:1967415-1967434 MS.gene63673:CDS 50.0%
ACTCTTCACACTGTGGGCCT+GGG + chr3.3:1966771-1966790 None:intergenic 55.0%
AGAGCCCCGTGTCCTCATTT+GGG + chr3.3:1966724-1966743 None:intergenic 55.0%
ATTGAGGGTTTAGGAGGGGG+AGG + chr3.3:1964994-1965013 None:intergenic 55.0%
CAATTGCAAGTCTGCAGCCC+AGG - chr3.3:1966751-1966770 MS.gene63673:intron 55.0%
CTGGGCTGCAGACTTGCAAT+TGG + chr3.3:1966753-1966772 None:intergenic 55.0%
GCAGCTGCAGCAACAGACAA+AGG + chr3.3:1964492-1964511 None:intergenic 55.0%
GGGAATCTGACCCTGATGAC+AGG + chr3.3:1966341-1966360 None:intergenic 55.0%
GGGTTTAAGAGGGGAAGGGA+AGG - chr3.3:1964801-1964820 MS.gene63673:intron 55.0%
GTGGAGGGTTTAAGAGGGGA+AGG - chr3.3:1964796-1964815 MS.gene63673:intron 55.0%
GTTATGGCGTGTTTGGGTGG+AGG - chr3.3:1964780-1964799 MS.gene63673:intron 55.0%
TAAGAGGGGAAGGGAAGGGA+GGG - chr3.3:1964806-1964825 MS.gene63673:intron 55.0%
TAGAGCCCCGTGTCCTCATT+TGG + chr3.3:1966725-1966744 None:intergenic 55.0%
TTAAGAGGGGAAGGGAAGGG+AGG - chr3.3:1964805-1964824 MS.gene63673:intron 55.0%
TTGAGGGTTTAGGAGGGGGA+GGG + chr3.3:1964993-1965012 None:intergenic 55.0%
! ACGGGCAGCAGTTGATGCAA+GGG - chr3.3:1966930-1966949 MS.gene63673:intron 55.0%
! GCTGCAGCTGCTGCGTTTTT+AGG - chr3.3:1964501-1964520 MS.gene63673:intron 55.0%
!! GGTGTGGTGGAAGGTACCAT+TGG - chr3.3:1964422-1964441 MS.gene63673:intron 55.0%
!! TATTGATTCGGCGGTGGTGG+AGG - chr3.3:1964371-1964390 MS.gene63673:intron 55.0%
!! TGGTATTGATTCGGCGGTGG+TGG - chr3.3:1964368-1964387 MS.gene63673:intron 55.0%
AAGAGGGGAAGGGAAGGGAG+GGG - chr3.3:1964807-1964826 MS.gene63673:intron 60.0%
CACTCTTCACACTGTGGGCC+TGG + chr3.3:1966772-1966791 None:intergenic 60.0%
GAAAGGGATGGGCAGCAGTC+TGG - chr3.3:1966843-1966862 MS.gene63673:intron 60.0%
GGAAGAGATGGCCGTACCAC+AGG + chr3.3:1967488-1967507 None:intergenic 60.0%
! GACGGGCAGCAGTTGATGCA+AGG - chr3.3:1966929-1966948 MS.gene63673:intron 60.0%
GGTGGAGGAAGAGGGGAAGG+AGG - chr3.3:1964386-1964405 MS.gene63673:intron 65.0%
!! GGTGGTGGAGGAAGAGGGGA+AGG - chr3.3:1964383-1964402 MS.gene63673:intron 65.0%
!! TCGGCGGTGGTGGAGGAAGA+GGG - chr3.3:1964378-1964397 MS.gene63673:intron 65.0%
!! TTCGGCGGTGGTGGAGGAAG+AGG - chr3.3:1964377-1964396 MS.gene63673:intron 65.0%
AGGGGAAGGGAAGGGAGGGG+AGG - chr3.3:1964810-1964829 MS.gene63673:intron 70.0%
GGGGAAGGGAAGGGAGGGGA+GGG - chr3.3:1964811-1964830 MS.gene63673:intron 70.0%
!! CGGCGGTGGTGGAGGAAGAG+GGG - chr3.3:1964379-1964398 MS.gene63673:intron 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 1963985 1967553 1963985 ID=MS.gene63673
chr3.3 mRNA 1963985 1967553 1963985 ID=MS.gene63673.t1;Parent=MS.gene63673
chr3.3 exon 1966933 1967553 1966933 ID=MS.gene63673.t1.exon1;Parent=MS.gene63673.t1
chr3.3 CDS 1966933 1967553 1966933 ID=cds.MS.gene63673.t1;Parent=MS.gene63673.t1
chr3.3 exon 1963985 1964119 1963985 ID=MS.gene63673.t1.exon2;Parent=MS.gene63673.t1
chr3.3 CDS 1963985 1964119 1963985 ID=cds.MS.gene63673.t1;Parent=MS.gene63673.t1
Gene Sequence

>MS.gene63673

ATGGATCATCGAACAAACGAAGAAGAAATCGAAGCTGGTGAATGGGAATTTATCCACAACGATAATGAAAATGAAAATCCAATCGTTGAATTGAAAAATTCTGATTCAGATTCATCAATTATCAGATCTGATCATTTTTCAATCAATCCGATTCAGATTAATCAAATTCCCAATTCGATTTCCAGTAGTTCTAGTTCAAATTCTGAAATTGATCGAAATTTCGATGATTCATACGTTGCAAATCAGATTTACCCTAATAATCTTCCTCGTTGGAATGATTCTGATTCCGATAGCGACGTTGTTAGCGTTGCTGACGTTGCTAACAACGTCGCTGTCGGTGTAATTGATGATAAGGTGGTTGTTGATGATGAGGTTGTTGAAAGTGGTATTGATTCGGCGGTGGTGGAGGAAGAGGGGAAGGAGGATGAGAAGAGATTGGTGTGGTGGAAGGTACCATTGGAAGTGTTGAAACATTGGGTGAATCCTTTTTCGGTGGTTTCGATGCCTTTGTCTGTTGCTGCAGCTGCTGCGTTTTTAGGGCTTCTTATATTGGGAAGGAGATTGTATAAAATGAAGAGAAAGACTCAAACTTTGAAGCTTAACCTTGCTCTTGATGATAAGGTCACTCTCTCTGTTTTTATCTATTTTTCGATATTTCATTGTTTATGTTCTATGAAACACCAAGACACGACACTGACACGAAGACACAATAGACAGAGAAAATAGAAGTGATTGACTGTAATTATATACATATGTGTCAGAATGACACCGGAAACAACACTTTTAATTTGAAGTGTTATGGCGTGTTTGGGTGGAGGGTTTAAGAGGGGAAGGGAAGGGAGGGGAGGGTTTATTTATCGTTTTTAAATTATGGAAACTATGAAATGTTTTTTGAAAAATTAAAATAATAACATGACAAACGATCATATAATATTTTTTTAATCACACTTAATTTATTTTAGAAAAACATGTTATATAGTCTGTAATTTAAAAAAGAAAAGTAAACCCTCCCCCTCCTAAACCCTCAATCCAAACACACCCTTAGTGATACATGTGATACATAGCGGACACATAGGCGCTTATAATATAATATGAGAAAATGAATGTGATTGAATGTAAACACATGATTGGACACCTAGACACCAATAATATAATATGAGAAAATGAAAATGATTGAATGTAACTACATGAGTCCTCTGATACATGTTGAAAACCAAATACACCTTCAAATTGAAATTTTGTGTTACATAGCTTGTAAGTTGTTTGTAAAAAAAAAGTGTAACCACAAAAGTCCATGACCTCGATGCATAGTCACTGACACATACACACCACCAATAATATGAGAAAATGAAATTGATTAAATGTAACATGAGTCCATTCACAACCAAATACGCCTTCAATTTCAAGTGTTGTGTTACATAGTTGCTTATATAGTCGTTGCATATGAATGGCAGTTTACAAGAGTTTACTTGAGTTTATCCTATGGTACCTTTTAAAGTTTAAATATAAGTTTATGATGACATGTGCGAAGGCTATTTTTGGCTTATTTTGGTATGCTTTCCAGTATAGCTGACTGATTTCTTAATAAAGCTATTTATTCAATCATGTTAATTTAAGGTATAGATAAAAGGGTGAGAACAATAATAAAGTTTATGGTGATATGTGTGAACTATTTTTTTGTGTATTTCTGTTAGCTTTCCAAAATAGCTTATTAAAGTAATTGCTTGATTAAGCAATTTACTCAATCTCATTAATTTAAGGTTAAGGTATAGATAAAAAGGTAAGAGCAAAGAATTTTGATTATTAATTTGGTTTGATATGATTGGTGGTTATGATTTGACACGAGAAGAAAATATTTGTTTGCTAGTACTCAATTTATAGTGCTCATATTACAGAAATTAACCCTTATCTCATCATATATTTATGTACAAATACATGACAGTATTGCATAAATGATAGAAGGCAGAAAGACACCTTTTATAATTGAATATCAACAATAAATTAGCCGCTAAACAGAGAGCAAAGTGTCATCTAATCGGAGAGGCTTAATATATCTGGTATCTGTTCTTGTGTTAGTATACGAGTCACAGCCAGGGATTTATTCAGCACCTTGTCTGTGAACAGGATTGTGACACGAGGAGACAATGCATTGACTGTCATAGTAGTTGATTGGAACTGAAACACGAACCTGTAATTCAGTAAGAAGAGACTGAATCCAAATTATTTCACTTATTCTTATGGCTAGCATCCGATATTCAGTTTTGACACTTGAATGAACAACTTTTTGCTGCTTTTTAGACTACCGTGAAAATAAATTAGGTTCAAAGTATATGCTAGACCCTGAAGTAGATCACCTGTCATCAGGGTCAGATTCCCAATTGGCATCGCAAAATACCTGTAAAACGATGTGACTGATCTTCAGTAAAAGAAGGCCATGATCAGTTGAGCCTTTTAAGATACTGCAAAATGCACTCTGGCAATTTTCCTATACTCATTTAGTGGCCATGCCATAAATTGGCACACCTTATTTACACTAGCTGATTTCAATCTGGTTCCAATTCCATATTGCAATACACCTGCCCTACAGTAGAATGACAGCTGAGGGTAAGCCATGTGCCATAAATGCTGTAGGCACCGTTTTTCACGATTAATATCTATAACTATGCATATTACCCTTGCATAACTGTCTATGATGTCTATAGTGGAAGACAGCACCTAAACCACATAAGCACATATCCCAAATGAGGACACGGGGCTCTAACAACCCAATTGCAAGTCTGCAGCCCAGGCCCACAGTGTGAAGAGTGTATGCGAGGAACAATAAGAAACAGAGGACAAATGATAACAGAGAAGAGAGAGAAAGGGATGGGCAGCAGTCTGGAGTGTATGTGAGGAAGAATAAGAAACGGAGGACAAATGATAATATGGGGAAGAGAGAAAATGGGACGGGCAGCAGTTGATGCAAGGGACTGTTATTTGATTAAGGGACAATTATTTGATTAAGAGGTTGGTTATTTGAGTAGTATGGGGGAGTGAGTGAAAAGTTACCTTGGAATTCATTTTAGAATTGTTTATGGAGAAAATAAACTATTTTCTCTGTAGGAGCATTTGCTCTTGTGGACAGCAGGGTGCCCATTCCACTGTATATCTGTTATTTCAGTCTTAACACAGTTTCCTTCATCCAATTTTGTTCTGTTCTCTTCTACTTATTTACGGATTGTAAATTCTGATTCCTATACTTTTGAGTAGATAAGTTTTTTCCTTGATTTTATCGTATGGTGATTATTAGACCAGCACATTTCTTAGTGCCTTTTTGAGACATGTTCAGCCGTTGACGGCTGCTTTTGTTGATAATGATATTAATATGCTGCATTCTTTGAGAAACCTCACAACATTGTTAAGTTTCTGAGGTTCACTTGTAACAATTTTCGCAGAAGGTATCTCAGCTCAAGGGTCGTGTTGCACGTCTCAATGAAGCATTTTCAGTAGTGAGACGCATTCCTGTGGTACGGCCATCTCTTCCAGCTGCTTCTACTATAACTCTGAGGCCTGTTATGAGTATGAGATGA

Protein sequence

>MS.gene63673.t1

MDHRTNEEEIEAGEWEFIHNDNENENPIVELKNSDSDSSIIRSDHFSINPIQINQIPNSISSSSSSNSEIDRNFDDSYVANQIYPNNLPRWNDSDSDSDVVSVADVANNVAVGVIDDKVVVDDEVVESGIDSAVVEEEGKEDEKRLVWWKVPLEVLKHWVNPFSVVSMPLSVAAAAAFLGLLILGRRLYKMKRKTQTLKLNLALDDKKVSQLKGRVARLNEAFSVVRRIPVVRPSLPAASTITLRPVMSMR