AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057702

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057702.t1 MTR_4g073730 96.012 326 13 0 1 326 1 326 0.0 643
MS.gene057702.t1 MTR_4g073730 96.528 288 10 0 1 288 1 288 0.0 572
MS.gene057702.t1 MTR_1g025420 53.605 319 132 5 5 309 4 320 1.22e-112 330
MS.gene057702.t1 MTR_8g037890 62.449 245 83 3 5 248 11 247 8.34e-111 325
MS.gene057702.t1 MTR_8g056820 62.449 245 83 3 5 248 11 247 3.15e-108 316
MS.gene057702.t1 MTR_1g025420 62.249 249 91 3 5 252 4 250 3.37e-108 316
MS.gene057702.t1 MTR_5g022310 55.034 298 119 5 3 298 6 290 2.21e-107 315
MS.gene057702.t1 MTR_5g022310 61.600 250 92 3 3 250 6 253 7.78e-107 312
MS.gene057702.t1 MTR_8g075550 64.807 233 77 3 19 247 22 253 1.40e-103 306
MS.gene057702.t1 MTR_3g114030 62.771 231 84 2 19 248 1 230 4.63e-103 302
MS.gene057702.t1 MTR_4g073720 55.102 245 100 4 5 247 3 239 1.16e-88 269
MS.gene057702.t1 MTR_5g022350 55.510 245 91 5 5 249 18 244 8.84e-87 263
MS.gene057702.t1 MTR_8g075510 53.441 247 99 6 3 248 13 244 9.32e-84 253
MS.gene057702.t1 MTR_8g075510 53.252 246 99 6 3 247 13 243 1.14e-82 253
MS.gene057702.t1 MTR_2g067980 50.794 252 115 5 1 248 1 247 1.98e-78 258
MS.gene057702.t1 MTR_7g102380 52.489 221 100 4 29 248 25 241 9.02e-78 238
MS.gene057702.t1 MTR_8g036215 51.477 237 110 4 11 247 6 237 4.92e-76 233
MS.gene057702.t1 MTR_2g068655 50.431 232 109 3 27 257 33 259 5.38e-76 236
MS.gene057702.t1 MTR_2g069660 49.593 246 115 5 5 248 5 243 1.05e-75 233
MS.gene057702.t1 MTR_2g068030 48.918 231 112 4 19 247 17 243 1.34e-74 230
MS.gene057702.t1 MTR_6g079580 48.790 248 119 5 1 248 1 240 1.81e-74 229
MS.gene057702.t1 MTR_1g062590 48.954 239 115 5 11 248 10 242 2.85e-74 229
MS.gene057702.t1 MTR_1g062630 48.031 254 122 6 11 260 10 257 2.02e-73 228
MS.gene057702.t1 MTR_1g062660 48.945 237 115 5 14 248 10 242 1.03e-71 223
MS.gene057702.t1 MTR_1g021945 53.540 226 97 5 25 248 26 245 1.78e-71 222
MS.gene057702.t1 MTR_1g062350 48.954 239 115 5 11 248 10 242 1.83e-71 222
MS.gene057702.t1 MTR_1g062370 48.536 239 116 5 11 248 10 242 3.07e-71 221
MS.gene057702.t1 MTR_1g062340 49.321 221 107 4 29 248 26 242 1.26e-68 214
MS.gene057702.t1 MTR_8g107140 49.180 244 117 6 5 248 9 245 1.46e-68 214
MS.gene057702.t1 MTR_3g111620 51.556 225 103 5 25 248 27 246 2.79e-67 211
MS.gene057702.t1 MTR_3g068015 41.700 247 137 5 4 248 7 248 1.34e-61 197
MS.gene057702.t1 MTR_6g009480 43.725 247 132 6 5 248 10 252 1.04e-60 195
MS.gene057702.t1 MTR_7g062610 42.276 246 133 5 6 250 7 244 2.29e-60 193
MS.gene057702.t1 MTR_5g059200 44.223 251 124 8 1 247 1 239 3.08e-58 189
MS.gene057702.t1 MTR_4g063630 39.331 239 139 6 12 247 16 251 8.40e-58 187
MS.gene057702.t1 MTR_1g062690 43.096 239 105 6 11 248 10 218 1.94e-56 182
MS.gene057702.t1 MTR_2g067990 46.288 229 91 10 22 248 24 222 1.00e-51 184
MS.gene057702.t1 MTR_5g023850 39.759 249 105 6 3 248 10 216 1.02e-50 168
MS.gene057702.t1 MTR_5g010635 41.048 229 109 8 23 249 22 226 2.23e-45 155
MS.gene057702.t1 MTR_5g022350 54.605 152 57 4 5 156 83 222 6.73e-45 153
MS.gene057702.t1 MTR_5g010640 38.306 248 123 9 9 248 11 236 1.66e-44 152
MS.gene057702.t1 MTR_2g067970 45.405 185 92 6 68 248 3 182 3.83e-44 161
MS.gene057702.t1 MTR_8g096900 38.956 249 115 10 4 248 33 248 8.41e-44 150
MS.gene057702.t1 MTR_2g063150 30.165 242 156 6 4 240 9 242 1.78e-34 127
MS.gene057702.t1 MTR_1g062390 32.411 253 151 7 1 248 1 238 7.75e-32 119
MS.gene057702.t1 MTR_7g076360 32.432 222 84 4 23 244 6 161 1.04e-31 117
MS.gene057702.t1 MTR_8g089020 45.926 135 66 3 109 243 32 159 3.57e-31 115
MS.gene057702.t1 MTR_8g096910 42.029 138 67 6 5 140 3 129 4.79e-26 102
MS.gene057702.t1 MTR_8g096920 43.478 138 67 6 6 142 1 128 1.68e-23 95.5
MS.gene057702.t1 MTR_3g081550 46.591 88 46 1 110 197 16 102 4.58e-18 79.0
MS.gene057702.t1 MTR_1g062640 39.759 83 49 1 84 166 65 146 4.21e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057702.t1 AT4G38670 73.239 284 68 6 1 281 2 280 2.19e-146 414
MS.gene057702.t1 AT4G38670 73.239 284 68 6 1 281 2 280 2.19e-146 414
MS.gene057702.t1 AT4G38670 74.060 266 64 4 19 281 1 264 6.43e-142 402
MS.gene057702.t1 AT1G75800 59.011 283 110 4 6 286 5 283 2.12e-113 332
MS.gene057702.t1 AT4G36010 64.167 240 78 3 22 255 20 257 4.58e-105 310
MS.gene057702.t1 AT4G36010 64.167 240 78 3 22 255 20 257 4.58e-105 310
MS.gene057702.t1 AT1G20030 62.712 236 86 2 22 255 17 252 1.13e-104 309
MS.gene057702.t1 AT2G17860 60.400 250 89 3 4 250 9 251 4.61e-104 305
MS.gene057702.t1 AT1G20030 63.362 232 83 2 26 255 4 235 5.99e-104 306
MS.gene057702.t1 AT4G24180 52.708 277 111 6 6 268 12 282 1.89e-91 275
MS.gene057702.t1 AT4G24180 52.727 275 109 6 6 268 12 277 2.26e-91 275
MS.gene057702.t1 AT4G24180 54.980 251 99 4 6 248 12 256 2.27e-90 271
MS.gene057702.t1 AT4G24180 55.020 249 97 4 6 248 12 251 2.44e-90 270
MS.gene057702.t1 AT4G38660 57.202 243 90 5 12 248 11 245 1.62e-86 264
MS.gene057702.t1 AT4G38660 58.929 224 84 3 25 248 8 223 2.29e-86 263
MS.gene057702.t1 AT5G38280 43.813 299 146 4 4 300 5 283 8.38e-83 264
MS.gene057702.t1 AT5G38280 43.813 299 146 4 4 300 5 283 1.14e-82 263
MS.gene057702.t1 AT4G24180 54.237 236 94 4 6 233 12 241 2.14e-81 250
MS.gene057702.t1 AT4G24180 54.274 234 92 4 6 233 12 236 3.56e-81 249
MS.gene057702.t1 AT5G24620 52.549 255 110 8 1 248 1 251 2.26e-80 251
MS.gene057702.t1 AT5G24620 52.549 255 110 8 1 248 56 306 6.71e-80 251
MS.gene057702.t1 AT5G24620 52.549 255 110 8 1 248 77 327 1.37e-79 251
MS.gene057702.t1 AT1G19320 51.429 245 107 6 8 247 9 246 3.66e-75 231
MS.gene057702.t1 AT1G75030 50.000 244 114 7 6 248 7 243 6.15e-74 228
MS.gene057702.t1 AT1G75050 49.794 243 116 6 6 248 7 243 3.04e-71 221
MS.gene057702.t1 AT1G75040 50.206 243 111 6 6 248 7 239 1.02e-70 220
MS.gene057702.t1 AT1G18250 48.035 229 114 4 20 248 16 239 4.25e-68 213
MS.gene057702.t1 AT1G18250 50.000 218 104 4 31 248 28 240 1.01e-67 212
MS.gene057702.t1 AT1G73620 49.123 228 111 5 21 248 38 260 4.81e-67 211
MS.gene057702.t1 AT1G77700 46.281 242 117 7 6 247 43 271 5.84e-62 200
MS.gene057702.t1 AT1G77700 46.281 242 117 7 6 247 43 271 7.81e-62 200
MS.gene057702.t1 AT2G28790 44.398 241 123 8 13 247 38 273 7.87e-61 196
MS.gene057702.t1 AT2G28790 44.398 241 123 8 13 247 13 248 8.44e-61 195
MS.gene057702.t1 AT1G77700 47.964 221 103 6 27 247 91 299 7.48e-60 196
MS.gene057702.t1 AT5G40020 41.633 245 138 4 5 248 8 248 2.93e-58 188
MS.gene057702.t1 AT5G02140 41.365 249 139 4 9 256 7 249 1.36e-57 188
MS.gene057702.t1 AT5G02140 42.324 241 132 4 9 248 7 241 1.89e-57 186
MS.gene057702.t1 AT4G36000 45.374 227 89 6 101 326 1 193 4.10e-57 184
MS.gene057702.t1 AT4G36000 45.374 227 89 6 101 326 1 193 4.10e-57 184
MS.gene057702.t1 AT4G18253 39.837 246 132 6 5 248 7 238 1.17e-54 179
MS.gene057702.t1 AT1G70250 41.921 229 120 7 26 248 146 367 3.99e-51 181
MS.gene057702.t1 AT4G18250 38.127 299 162 10 6 299 40 320 1.36e-47 170
MS.gene057702.t1 AT4G11650 39.592 245 122 8 5 248 4 223 4.92e-47 159
MS.gene057702.t1 AT5G24620 54.167 120 52 2 132 248 15 134 9.54e-38 137
MS.gene057702.t1 AT2G24810 58.667 75 31 0 173 247 118 192 1.97e-23 95.9

Find 96 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCGACCCGACCAAGCTTTC+GGG 0.192121 4.4:+35779297 None:intergenic
AAGCTTGGTCGGGTCGAATA+TGG 0.205954 4.4:-35779292 MS.gene057702:CDS
GAGCCATAAACAGTGTTAAA+AGG 0.243154 4.4:+35776605 None:intergenic
GGTTGTCTTGTGGATCTTAA+TGG 0.253676 4.4:-35778509 MS.gene057702:CDS
CGCTAATGTTGCCGGCGGTT+TGG 0.296053 4.4:+35779175 None:intergenic
ATTCGACCCGACCAAGCTTT+CGG 0.299164 4.4:+35779296 None:intergenic
AGAAGCGCGTGTGAGGCTTT+TGG 0.317232 4.4:-35778425 MS.gene057702:CDS
GAGAGTATGTACCTTGTATA+AGG 0.347177 4.4:+35778227 None:intergenic
ACCGGCACAGGCTACTTTGC+CGG 0.349188 4.4:+35779205 None:intergenic
ACAAGTGCCGTTACACAATA+TGG 0.350341 4.4:-35779406 MS.gene057702:CDS
TGTTTATGGCTCCCTTTGTA+TGG 0.357494 4.4:-35776594 MS.gene057702:CDS
CTTACATTATCTTTCCTCTC+AGG 0.391595 4.4:-35779554 MS.gene057702:intron
TCCCTTTGTATGGACTCTTC+AGG 0.408087 4.4:-35776584 MS.gene057702:CDS
GTGAACTCCGCTAATGTTGC+CGG 0.419395 4.4:+35779167 None:intergenic
CGTGGGAATGGGAGTGGCAG+TGG 0.422771 4.4:-35778458 MS.gene057702:CDS
TTGAAGGTGGCGCGTGGGAA+TGG 0.425944 4.4:-35778470 MS.gene057702:CDS
GTGAATCCGGTGGTGGGTAG+CGG 0.426509 4.4:+35779353 None:intergenic
TACTTGTCAAAACAACATTC+TGG 0.427034 4.4:-35776710 MS.gene057702:CDS
TTCACCTTGAACGGCGCCGA+TGG 0.430117 4.4:-35779149 MS.gene057702:CDS
GGACTTCTACGACGTGAGTT+TGG 0.430820 4.4:-35779123 MS.gene057702:CDS
AGCTTGGTCGGGTCGAATAT+GGG 0.433087 4.4:-35779291 MS.gene057702:CDS
CAGTGTTAAAAGGGCATGAC+AGG 0.438064 4.4:+35776615 None:intergenic
GTGGCGCCGGAGAGTAATCC+TGG 0.438241 4.4:+35779383 None:intergenic
AGAGGTGGCTGCAGCGCTAC+TGG 0.439408 4.4:-35778530 MS.gene057702:CDS
TTTGAGGGTGAATCCGGTGG+TGG 0.449715 4.4:+35779346 None:intergenic
CATAAGCTATAATCTGCGTT+TGG 0.462455 4.4:+35776663 None:intergenic
TGAAGGTGGCGCGTGGGAAT+GGG 0.462706 4.4:-35778469 MS.gene057702:CDS
CTTGAACGGCGCCGATGGGT+TGG 0.464197 4.4:-35779144 MS.gene057702:CDS
CAACCCATCGGCGCCGTTCA+AGG 0.467717 4.4:+35779145 None:intergenic
CGGCGGTTTGGCACCACCAC+CGG 0.468046 4.4:+35779187 None:intergenic
GTGGCGCGTGGGAATGGGAG+TGG 0.468651 4.4:-35778464 MS.gene057702:CDS
CCCTCAAAAGTGGAAATTCA+AGG 0.472387 4.4:-35779331 MS.gene057702:CDS
TGGTTGTCCGGTGGATTTGA+AGG 0.475420 4.4:-35778486 MS.gene057702:CDS
GGTGGGTAGCGGCGGTGAAG+TGG 0.480296 4.4:+35779364 None:intergenic
GTGTTGGGAGCAAGGAAAGA+TGG 0.483447 4.4:-35776767 MS.gene057702:CDS
CTGAGAGGAAAGATAATGTA+AGG 0.492145 4.4:+35779555 None:intergenic
AGCCATAAACAGTGTTAAAA+GGG 0.495668 4.4:+35776606 None:intergenic
ATAGAAGGACCACACGTGTC+AGG 0.500444 4.4:+35778365 None:intergenic
TCACCTTGAACGGCGCCGAT+GGG 0.506755 4.4:-35779148 MS.gene057702:CDS
ATCACTGCCGACTGTGGCTC+CGG 0.513327 4.4:-35779224 MS.gene057702:CDS
CAGCGCTACTGGTTGTCTTG+TGG 0.515275 4.4:-35778519 MS.gene057702:CDS
GGATCTTAATGGTGGTTGTC+CGG 0.517771 4.4:-35778498 MS.gene057702:CDS
ACCGGATTCACCCTCAAAAG+TGG 0.519297 4.4:-35779341 MS.gene057702:CDS
GCCTGAAGAGTCCATACAAA+GGG 0.521704 4.4:+35776583 None:intergenic
GTGGATTTGAAGGTGGCGCG+TGG 0.524437 4.4:-35778476 MS.gene057702:CDS
TGCCGTTACACAATATGGCC+AGG 0.524801 4.4:-35779401 MS.gene057702:CDS
AATCCGGTGGTGGGTAGCGG+CGG 0.527239 4.4:+35779356 None:intergenic
TTTGCCCCTTGCCTTATACA+AGG 0.531616 4.4:-35778238 MS.gene057702:intron
CTGTACAAATCCCGAAAGCT+TGG 0.531795 4.4:-35779307 MS.gene057702:CDS
TCCGGCAAAGTAGCCTGTGC+CGG 0.533384 4.4:-35779206 MS.gene057702:CDS
TACGACGTGAGTTTGGTTGA+CGG 0.533722 4.4:-35779116 MS.gene057702:intron
AGAAGCACATGTGTAAGTAC+TGG 0.536470 4.4:+35778280 None:intergenic
CGGTGGTGGTGCCAAACCGC+CGG 0.536594 4.4:-35779186 MS.gene057702:CDS
TGCTGATTGTGGCGAAAGGA+GGG 0.536940 4.4:-35778556 MS.gene057702:CDS
AAAGTAGCCTGTGCCGGTGG+TGG 0.537264 4.4:-35779200 MS.gene057702:CDS
TTTGGCACCACCACCGGCAC+AGG 0.538734 4.4:+35779193 None:intergenic
TGCGTGTAGAAGCGCGTGTG+AGG 0.544201 4.4:-35778432 MS.gene057702:CDS
CGCGCCACCTTCAAATCCAC+CGG 0.546086 4.4:+35778479 None:intergenic
TAGCGGCGGTGAAGTGGCGC+CGG 0.556355 4.4:+35779370 None:intergenic
CAAATCCCGAAAGCTTGGTC+GGG 0.556414 4.4:-35779302 MS.gene057702:CDS
TACTTTGCCGGAGCCACAGT+CGG 0.557155 4.4:+35779217 None:intergenic
CAAACCGCCGGCAACATTAG+CGG 0.557840 4.4:-35779174 MS.gene057702:CDS
ATGTACCTTGTATAAGGCAA+GGG 0.560600 4.4:+35778233 None:intergenic
TAATATTCCGATGCTGATTG+TGG 0.561283 4.4:-35778567 MS.gene057702:CDS
ATGCTGATTGTGGCGAAAGG+AGG 0.563722 4.4:-35778557 MS.gene057702:CDS
TTAGCGGAGTTCACCTTGAA+CGG 0.566279 4.4:-35779158 MS.gene057702:CDS
TCACCGCCGCTACCCACCAC+CGG 0.567829 4.4:-35779359 MS.gene057702:CDS
ACAAATCCCGAAAGCTTGGT+CGG 0.573737 4.4:-35779303 MS.gene057702:CDS
GCGAAAGGAGGGACGAGAGG+TGG 0.576149 4.4:-35778545 MS.gene057702:CDS
TATGTACCTTGTATAAGGCA+AGG 0.588394 4.4:+35778232 None:intergenic
TCTGGCGGTTCTTCATCGAA+AGG 0.589806 4.4:-35776692 MS.gene057702:CDS
ACGAAGATTGTTTACCTGAG+AGG 0.591768 4.4:+35779540 None:intergenic
TTGAGGGTGAATCCGGTGGT+GGG 0.595856 4.4:+35779347 None:intergenic
TTATGTTACCTCTATTGCTG+TGG 0.596714 4.4:-35776645 MS.gene057702:CDS
TGTCTTGTGGATCTTAATGG+TGG 0.605370 4.4:-35778506 MS.gene057702:CDS
GGCAAAGTAGCCTGTGCCGG+TGG 0.605456 4.4:-35779203 MS.gene057702:CDS
ATATGGCCAGGATTACTCTC+CGG 0.607890 4.4:-35779389 MS.gene057702:CDS
TCATGTATCACTGCCGACTG+TGG 0.608237 4.4:-35779230 MS.gene057702:CDS
TCTTAATGGTGGTTGTCCGG+TGG 0.609618 4.4:-35778495 MS.gene057702:CDS
TACGCGTAGCTATAAGAGCG+TGG 0.613171 4.4:+35778314 None:intergenic
GTCGTAGAAGTCCAACCCAT+CGG 0.615427 4.4:+35779133 None:intergenic
ACGCGTAGCTATAAGAGCGT+GGG 0.618064 4.4:+35778315 None:intergenic
CCTTTCGCCACAATCAGCAT+CGG 0.620311 4.4:+35778560 None:intergenic
AACTCCGCTAATGTTGCCGG+CGG 0.629510 4.4:+35779170 None:intergenic
CCGATGCTGATTGTGGCGAA+AGG 0.629640 4.4:-35778560 MS.gene057702:CDS
TGGATTTGAAGGTGGCGCGT+GGG 0.631113 4.4:-35778475 MS.gene057702:CDS
TCCTCGCTATTGTTGTAGTG+AGG 0.634828 4.4:-35778399 MS.gene057702:CDS
ATCCTGGCCATATTGTGTAA+CGG 0.635375 4.4:+35779399 None:intergenic
GTGGCGAAAGGAGGGACGAG+AGG 0.637443 4.4:-35778548 MS.gene057702:CDS
TTGTCCGGTGGATTTGAAGG+TGG 0.644144 4.4:-35778483 MS.gene057702:CDS
TGTACCTTGTATAAGGCAAG+GGG 0.668085 4.4:+35778234 None:intergenic
TGCCTGAAGAGTCCATACAA+AGG 0.671288 4.4:+35776582 None:intergenic
TATTCTACACCTGACACGTG+TGG 0.679351 4.4:-35778374 MS.gene057702:CDS
ATATGGGCACGAACGCTCTG+CGG 0.681058 4.4:-35779275 MS.gene057702:CDS
TTGTCAAAACAACATTCTGG+CGG 0.691588 4.4:-35776707 MS.gene057702:CDS
TCCTCACTACAACAATAGCG+AGG 0.701705 4.4:+35778398 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATAAAAGTGTTTAATA+TGG - chr4.4:35778932-35778951 MS.gene057702:intron 10.0%
!!! TATATTTTAATGTTATGTTA+GGG - chr4.4:35778897-35778916 MS.gene057702:intron 10.0%
!!! TCTAAAAATATTGTTATTAT+TGG - chr4.4:35777212-35777231 MS.gene057702:intron 10.0%
!! ATAATCAAAAGCTAAAAAAA+TGG + chr4.4:35777993-35778012 None:intergenic 15.0%
!! CTAACATAACATTAAAATAT+AGG + chr4.4:35778898-35778917 None:intergenic 15.0%
!!! CTATATTTTAATGTTATGTT+AGG - chr4.4:35778896-35778915 MS.gene057702:intron 15.0%
!!! TATTGTTATTATTGGTATAA+AGG - chr4.4:35777220-35777239 MS.gene057702:intron 15.0%
!! AAAATATAGGCATATTAATC+CGG + chr4.4:35778885-35778904 None:intergenic 20.0%
!! ATAATTCAATGTAATCATGT+TGG + chr4.4:35777185-35777204 None:intergenic 20.0%
!! ATTTCATCAAATTTGAAGAA+AGG + chr4.4:35777251-35777270 None:intergenic 20.0%
!! TATAGTGATAGGAAAAAAAA+CGG - chr4.4:35778287-35778306 MS.gene057702:CDS 20.0%
!!! AATCACATAAGACAATTTTT+TGG - chr4.4:35779263-35779282 MS.gene057702:CDS 20.0%
!!! ACACTTTTATTTATTCAACT+TGG + chr4.4:35778926-35778945 None:intergenic 20.0%
!!! ATCACATAAGACAATTTTTT+GGG - chr4.4:35779264-35779283 MS.gene057702:CDS 20.0%
!!! CAACTATTTTTCATAATTCA+AGG + chr4.4:35778683-35778702 None:intergenic 20.0%
!!! CACTTTTATTTATTCAACTT+GGG + chr4.4:35778925-35778944 None:intergenic 20.0%
!!! TTAAGCATATTTTACATATG+TGG + chr4.4:35779113-35779132 None:intergenic 20.0%
! AAAAAAGAGTCAGATAACAT+AGG - chr4.4:35778595-35778614 MS.gene057702:intron 25.0%
! AAGATATCTACTCGAATTAA+AGG - chr4.4:35778312-35778331 MS.gene057702:CDS 25.0%
! ACAATCCAATTATTAGCATA+TGG + chr4.4:35778428-35778447 None:intergenic 25.0%
! ACGAATATATCTATAGTGAT+AGG - chr4.4:35778276-35778295 MS.gene057702:CDS 25.0%
! AGAGTTACATTTGATTCAAT+TGG - chr4.4:35777438-35777457 MS.gene057702:intron 25.0%
! AGATATCTACTCGAATTAAA+GGG - chr4.4:35778313-35778332 MS.gene057702:CDS 25.0%
! AGTCTCTAATTAAGATACAT+AGG + chr4.4:35778045-35778064 None:intergenic 25.0%
! CATTACAAGAAAAAACTACA+AGG + chr4.4:35779225-35779244 None:intergenic 25.0%
! CCATGACTAATATAAAATTG+CGG + chr4.4:35778814-35778833 None:intergenic 25.0%
! GTTATGGAAAAACATTTGTT+GGG - chr4.4:35778528-35778547 MS.gene057702:CDS 25.0%
! TAAAATTGAATTCGAGAAAG+AGG + chr4.4:35779016-35779035 None:intergenic 25.0%
! TATCTATATAAGCACAGATT+AGG - chr4.4:35777117-35777136 MS.gene057702:intron 25.0%
! TATTAGTCATGGGAAAAATA+TGG - chr4.4:35778822-35778841 MS.gene057702:intron 25.0%
! TCATAATTCAAGGTAGAAAA+TGG + chr4.4:35778673-35778692 None:intergenic 25.0%
! TGTTATGGAAAAACATTTGT+TGG - chr4.4:35778527-35778546 MS.gene057702:CDS 25.0%
!! AAAATTTTTGTGTGCTTGAT+AGG - chr4.4:35777574-35777593 MS.gene057702:intron 25.0%
!! ATCAAGCACACAAAAATTTT+AGG + chr4.4:35777574-35777593 None:intergenic 25.0%
!! CACATATAAAAGACGTTTTA+AGG + chr4.4:35779148-35779167 None:intergenic 25.0%
!! CGCAATTTTATATTAGTCAT+GGG - chr4.4:35778812-35778831 MS.gene057702:intron 25.0%
!!! ATCATAGTTTTGTTTACAAG+AGG + chr4.4:35779436-35779455 None:intergenic 25.0%
!!! CTTGTAGTTTTTTCTTGTAA+TGG - chr4.4:35779223-35779242 MS.gene057702:CDS 25.0%
!!! CTTTTTTGTTGCTAAATCAA+AGG + chr4.4:35778582-35778601 None:intergenic 25.0%
!!! TCACATAAGACAATTTTTTG+GGG - chr4.4:35779265-35779284 MS.gene057702:CDS 25.0%
!!! TTTAACTTCACTTTGCTATT+TGG - chr4.4:35776690-35776709 MS.gene057702:CDS 25.0%
AAAAACAGCGAGTAAATAGA+AGG + chr4.4:35777820-35777839 None:intergenic 30.0%
AGCCATAAACAGTGTTAAAA+GGG + chr4.4:35779564-35779583 None:intergenic 30.0%
ATATGCTCCAATGAAATGAA+TGG - chr4.4:35778399-35778418 MS.gene057702:CDS 30.0%
ATGGTAACCATTCATTTCAT+TGG + chr4.4:35778409-35778428 None:intergenic 30.0%
ATTAGAGACTATGATTGCTA+TGG - chr4.4:35778055-35778074 MS.gene057702:intron 30.0%
ATTTATGCATGTATCTTCTG+TGG - chr4.4:35779358-35779377 MS.gene057702:CDS 30.0%
CATTTGATTCAATTGGAAAC+TGG - chr4.4:35777445-35777464 MS.gene057702:intron 30.0%
GATATCTACTCGAATTAAAG+GGG - chr4.4:35778314-35778333 MS.gene057702:CDS 30.0%
GGTTACCATATGCTAATAAT+TGG - chr4.4:35778420-35778439 MS.gene057702:CDS 30.0%
TACTTGTCAAAACAACATTC+TGG - chr4.4:35779457-35779476 MS.gene057702:intron 30.0%
TTAGATAACTCATTACCCAT+TGG - chr4.4:35777373-35777392 MS.gene057702:intron 30.0%
! AAAAACATTTGTTGGGAGTT+GGG - chr4.4:35778535-35778554 MS.gene057702:CDS 30.0%
! CCGCAATTTTATATTAGTCA+TGG - chr4.4:35778811-35778830 MS.gene057702:intron 30.0%
! CTTTGCTATCAAGTTAAGTA+AGG - chr4.4:35777350-35777369 MS.gene057702:intron 30.0%
! GAAAATGGTTTTTCTGTAGT+CGG + chr4.4:35778658-35778677 None:intergenic 30.0%
!! AACTTTGGAACAAATGGTTA+AGG + chr4.4:35778493-35778512 None:intergenic 30.0%
!! ACTTTGGAACAAATGGTTAA+GGG + chr4.4:35778492-35778511 None:intergenic 30.0%
!! GAGTTGTTTTGTTAGAGTAA+GGG - chr4.4:35778017-35778036 MS.gene057702:intron 30.0%
!! TAATCGAACTTTGGAACAAA+TGG + chr4.4:35778499-35778518 None:intergenic 30.0%
!! TGAGTTGTTTTGTTAGAGTA+AGG - chr4.4:35778016-35778035 MS.gene057702:intron 30.0%
!! TTGGATTGTTTCTATCAACA+TGG - chr4.4:35778439-35778458 MS.gene057702:CDS 30.0%
AAAATATGGTCAGACCTACA+TGG - chr4.4:35778836-35778855 MS.gene057702:intron 35.0%
AAATATGGTCAGACCTACAT+GGG - chr4.4:35778837-35778856 MS.gene057702:intron 35.0%
AACATGTGCAAATGTGGATT+TGG + chr4.4:35778106-35778125 None:intergenic 35.0%
AACTCTGATGAAGCTTATGT+TGG + chr4.4:35777424-35777443 None:intergenic 35.0%
AATATGGTTTCTAAGCCATG+AGG - chr4.4:35778948-35778967 MS.gene057702:intron 35.0%
ACCAGTCAATAATCGAACTT+TGG + chr4.4:35778508-35778527 None:intergenic 35.0%
ACTCTGATGAAGCTTATGTT+GGG + chr4.4:35777423-35777442 None:intergenic 35.0%
ATAGGGCTTCTATGATGATA+TGG - chr4.4:35777480-35777499 MS.gene057702:intron 35.0%
ATGTAATCATGTTGGTGTGT+TGG + chr4.4:35777177-35777196 None:intergenic 35.0%
ATGTACCTTGTATAAGGCAA+GGG + chr4.4:35777937-35777956 None:intergenic 35.0%
CATAAGCTATAATCTGCGTT+TGG + chr4.4:35779507-35779526 None:intergenic 35.0%
CTGAGAGGAAAGATAATGTA+AGG + chr4.4:35776615-35776634 None:intergenic 35.0%
CTTACATTATCTTTCCTCTC+AGG - chr4.4:35776613-35776632 MS.gene057702:CDS 35.0%
GAAAAGCAAGTTTGGAAACT+TGG + chr4.4:35779183-35779202 None:intergenic 35.0%
GAGCCATAAACAGTGTTAAA+AGG + chr4.4:35779565-35779584 None:intergenic 35.0%
GGGACATTTACGTCTTTATT+AGG - chr4.4:35779285-35779304 MS.gene057702:CDS 35.0%
GTACCTCTGAACATAATTCA+AGG + chr4.4:35776717-35776736 None:intergenic 35.0%
GTCTTATGTGATTTGAGTGA+GGG + chr4.4:35779256-35779275 None:intergenic 35.0%
TAGGGCTTCTATGATGATAT+GGG - chr4.4:35777481-35777500 MS.gene057702:intron 35.0%
TATGTACCTTGTATAAGGCA+AGG + chr4.4:35777938-35777957 None:intergenic 35.0%
TCCAAAGTTCGATTATTGAC+TGG - chr4.4:35778504-35778523 MS.gene057702:CDS 35.0%
TGATGTAAGCCCATGTAATT+TGG + chr4.4:35778754-35778773 None:intergenic 35.0%
TGATTCAATTGGAAACTGGA+GGG - chr4.4:35777449-35777468 MS.gene057702:intron 35.0%
TGTCTTATGTGATTTGAGTG+AGG + chr4.4:35779257-35779276 None:intergenic 35.0%
TTAATCCGGTAATCTGCATT+TGG + chr4.4:35778871-35778890 None:intergenic 35.0%
TTATGTTACCTCTATTGCTG+TGG - chr4.4:35779522-35779541 MS.gene057702:intron 35.0%
TTGATTCAATTGGAAACTGG+AGG - chr4.4:35777448-35777467 MS.gene057702:intron 35.0%
TTGTCAAAACAACATTCTGG+CGG - chr4.4:35779460-35779479 MS.gene057702:intron 35.0%
! GAAAAACATTTGTTGGGAGT+TGG - chr4.4:35778534-35778553 MS.gene057702:CDS 35.0%
! GAGAGTATGTACCTTGTATA+AGG + chr4.4:35777943-35777962 None:intergenic 35.0%
! TAATATTCCGATGCTGATTG+TGG - chr4.4:35777600-35777619 MS.gene057702:intron 35.0%
! TACTCGAATTAAAGGGGTAT+TGG - chr4.4:35778320-35778339 MS.gene057702:CDS 35.0%
! TCGATTATTGACTGGTGTTA+TGG - chr4.4:35778512-35778531 MS.gene057702:CDS 35.0%
! TCTATGATGATATGGGGTTT+TGG - chr4.4:35777488-35777507 MS.gene057702:intron 35.0%
! TGCCCTTTTAACACTGTTTA+TGG - chr4.4:35779559-35779578 MS.gene057702:CDS 35.0%
!! AAAGGGGTATTGGTTGATTT+GGG - chr4.4:35778330-35778349 MS.gene057702:CDS 35.0%
!! AATGCAGTTTGTTGACCAAT+GGG + chr4.4:35777391-35777410 None:intergenic 35.0%
!! CCTTGAATTTCCACTTTTGA+GGG + chr4.4:35776839-35776858 None:intergenic 35.0%
!! TAAAGGGGTATTGGTTGATT+TGG - chr4.4:35778329-35778348 MS.gene057702:CDS 35.0%
!! TAATGCAGTTTGTTGACCAA+TGG + chr4.4:35777392-35777411 None:intergenic 35.0%
!! TCCTTGAATTTCCACTTTTG+AGG + chr4.4:35776840-35776859 None:intergenic 35.0%
!!! GTTTTGTTTACAAGAGGAAG+TGG + chr4.4:35779430-35779449 None:intergenic 35.0%
AACTGGAGGGTTCTATCTAT+AGG - chr4.4:35777462-35777481 MS.gene057702:intron 40.0%
AAGCAAGTTTGGAAACTTGG+TGG + chr4.4:35779180-35779199 None:intergenic 40.0%
AATGGCCAAATGCAGATTAC+CGG - chr4.4:35778863-35778882 MS.gene057702:intron 40.0%
AATTGCGGAGAAGATACAAC+CGG + chr4.4:35778799-35778818 None:intergenic 40.0%
ACCACAAGGAAAAGCAAGTT+TGG + chr4.4:35779191-35779210 None:intergenic 40.0%
ACGAAGATTGTTTACCTGAG+AGG + chr4.4:35776630-35776649 None:intergenic 40.0%
ACTGGAGGGTTCTATCTATA+GGG - chr4.4:35777463-35777482 MS.gene057702:intron 40.0%
AGGAAAATCCAAACACCACA+AGG + chr4.4:35779205-35779224 None:intergenic 40.0%
AGGGCTTCTATGATGATATG+GGG - chr4.4:35777482-35777501 MS.gene057702:intron 40.0%
ATCCTGGCCATATTGTGTAA+CGG + chr4.4:35776771-35776790 None:intergenic 40.0%
CCACAAAACATGTGCAAATG+TGG + chr4.4:35778112-35778131 None:intergenic 40.0%
CCCTCAAAAGTGGAAATTCA+AGG - chr4.4:35776836-35776855 MS.gene057702:intron 40.0%
CTCACAGGTCCAAATTACAT+GGG - chr4.4:35778742-35778761 MS.gene057702:intron 40.0%
GGTCAACAAACTGCATTACT+AGG - chr4.4:35777394-35777413 MS.gene057702:intron 40.0%
GGTCCTTGAATTATGTTCAG+AGG - chr4.4:35776711-35776730 MS.gene057702:CDS 40.0%
GGTTGTCTTGTGGATCTTAA+TGG - chr4.4:35777658-35777677 MS.gene057702:intron 40.0%
TCAGACCTACATGGGTAAAA+TGG - chr4.4:35778845-35778864 MS.gene057702:intron 40.0%
TGTACCTTGTATAAGGCAAG+GGG + chr4.4:35777936-35777955 None:intergenic 40.0%
TGTCTTGTGGATCTTAATGG+TGG - chr4.4:35777661-35777680 MS.gene057702:intron 40.0%
TGTTTATGGCTCCCTTTGTA+TGG - chr4.4:35779573-35779592 MS.gene057702:CDS 40.0%
! ACAAGTGCCGTTACACAATA+TGG - chr4.4:35776761-35776780 MS.gene057702:CDS 40.0%
! AGAAGCACATGTGTAAGTAC+TGG + chr4.4:35777890-35777909 None:intergenic 40.0%
! CCACATTTGCACATGTTTTG+TGG - chr4.4:35778109-35778128 MS.gene057702:intron 40.0%
! TTTGAGCAGCCAAAAAGTGT+TGG - chr4.4:35779384-35779403 MS.gene057702:CDS 40.0%
! TTTGCACATGTTTTGTGGAC+TGG - chr4.4:35778114-35778133 MS.gene057702:intron 40.0%
!! ATTGGTTGATTTGGGCGATA+GGG - chr4.4:35778338-35778357 MS.gene057702:CDS 40.0%
!! GTTTTTCTGTAGTCGGTGTT+CGG + chr4.4:35778651-35778670 None:intergenic 40.0%
!! TATTGGTTGATTTGGGCGAT+AGG - chr4.4:35778337-35778356 MS.gene057702:CDS 40.0%
!! TCCAAACTTGCTTTTCCTTG+TGG - chr4.4:35779187-35779206 MS.gene057702:CDS 40.0%
!! TGTCTGGTGTCATATACTTG+TGG - chr4.4:35777142-35777161 MS.gene057702:intron 40.0%
!! TTGAGCAGCCAAAAAGTGTT+GGG - chr4.4:35779385-35779404 MS.gene057702:CDS 40.0%
!! TTGCTTTTCCTTGTGGTGTT+TGG - chr4.4:35779194-35779213 MS.gene057702:CDS 40.0%
!! TTGTTTCTATCAACATGGCG+AGG - chr4.4:35778444-35778463 MS.gene057702:CDS 40.0%
!! TTTGGCCATTTTACCCATGT+AGG + chr4.4:35778853-35778872 None:intergenic 40.0%
!!! ACACTTTTTGGCTGCTCAAA+AGG + chr4.4:35779384-35779403 None:intergenic 40.0%
AAGCACAGATTAGGCATGTC+TGG - chr4.4:35777126-35777145 MS.gene057702:intron 45.0%
ACAAATCCCGAAAGCTTGGT+CGG - chr4.4:35776864-35776883 MS.gene057702:intron 45.0%
AGAGACTAGTACACTACGTG+TGG + chr4.4:35778979-35778998 None:intergenic 45.0%
ATATGGCCAGGATTACTCTC+CGG - chr4.4:35776778-35776797 MS.gene057702:intron 45.0%
ATTGCGGAGAAGATACAACC+GGG + chr4.4:35778798-35778817 None:intergenic 45.0%
CCATGTAATTTGGACCTGTG+AGG + chr4.4:35778744-35778763 None:intergenic 45.0%
CCTCACAGGTCCAAATTACA+TGG - chr4.4:35778741-35778760 MS.gene057702:intron 45.0%
CTGTACAAATCCCGAAAGCT+TGG - chr4.4:35776860-35776879 MS.gene057702:intron 45.0%
GAAAAACGCCACAGCAATAG+AGG + chr4.4:35779533-35779552 None:intergenic 45.0%
GCCTGAAGAGTCCATACAAA+GGG + chr4.4:35779587-35779606 None:intergenic 45.0%
GGATCTTAATGGTGGTTGTC+CGG - chr4.4:35777669-35777688 MS.gene057702:intron 45.0%
TACGACGTGAGTTTGGTTGA+CGG - chr4.4:35777051-35777070 MS.gene057702:intron 45.0%
TATTCTACACCTGACACGTG+TGG - chr4.4:35777793-35777812 MS.gene057702:intron 45.0%
TCCCTTTGTATGGACTCTTC+AGG - chr4.4:35779583-35779602 MS.gene057702:CDS 45.0%
TCCTCACTACAACAATAGCG+AGG + chr4.4:35777772-35777791 None:intergenic 45.0%
TCCTCGCTATTGTTGTAGTG+AGG - chr4.4:35777768-35777787 MS.gene057702:intron 45.0%
TGCCTGAAGAGTCCATACAA+AGG + chr4.4:35779588-35779607 None:intergenic 45.0%
TGGTTGACGGTAAGTGTGTT+CGG - chr4.4:35777064-35777083 MS.gene057702:intron 45.0%
TTAGCGGAGTTCACCTTGAA+CGG - chr4.4:35777009-35777028 MS.gene057702:intron 45.0%
TTTGCCCCTTGCCTTATACA+AGG - chr4.4:35777929-35777948 MS.gene057702:intron 45.0%
! ACACGTAGTGTACTAGTCTC+TGG - chr4.4:35778978-35778997 MS.gene057702:intron 45.0%
! CAGTGTTAAAAGGGCATGAC+AGG + chr4.4:35779555-35779574 None:intergenic 45.0%
! TCATGTTGGTGTGTTGGTGT+CGG + chr4.4:35777171-35777190 None:intergenic 45.0%
! TCCTTGCTCCCAACACTTTT+TGG + chr4.4:35779396-35779415 None:intergenic 45.0%
!! TCCACTTTTGAGGGTGAATC+CGG + chr4.4:35776830-35776849 None:intergenic 45.0%
!! TTGGTTGATTTGGGCGATAG+GGG - chr4.4:35778339-35778358 MS.gene057702:CDS 45.0%
AAGCTTGGTCGGGTCGAATA+TGG - chr4.4:35776875-35776894 MS.gene057702:intron 50.0%
AATTTGGACCTGTGAGGCTG+TGG + chr4.4:35778738-35778757 None:intergenic 50.0%
ACCGGATTCACCCTCAAAAG+TGG - chr4.4:35776826-35776845 MS.gene057702:intron 50.0%
AGCTCAAGCCAGTTGGATGA+TGG - chr4.4:35778079-35778098 MS.gene057702:intron 50.0%
AGCTTGGTCGGGTCGAATAT+GGG - chr4.4:35776876-35776895 MS.gene057702:intron 50.0%
ATAGAAGGACCACACGTGTC+AGG + chr4.4:35777805-35777824 None:intergenic 50.0%
ATTCGACCCGACCAAGCTTT+CGG + chr4.4:35776874-35776893 None:intergenic 50.0%
CAAATCCCGAAAGCTTGGTC+GGG - chr4.4:35776865-35776884 MS.gene057702:intron 50.0%
CCTTTCGCCACAATCAGCAT+CGG + chr4.4:35777610-35777629 None:intergenic 50.0%
CTATGGAAGCTCAAGCCAGT+TGG - chr4.4:35778072-35778091 MS.gene057702:intron 50.0%
GATTTGGCCCATCATCCAAC+TGG + chr4.4:35778090-35778109 None:intergenic 50.0%
GCTCAAGCCAGTTGGATGAT+GGG - chr4.4:35778080-35778099 MS.gene057702:intron 50.0%
GGACTTCTACGACGTGAGTT+TGG - chr4.4:35777044-35777063 MS.gene057702:intron 50.0%
GTCGTAGAAGTCCAACCCAT+CGG + chr4.4:35777037-35777056 None:intergenic 50.0%
GTGAACTCCGCTAATGTTGC+CGG + chr4.4:35777003-35777022 None:intergenic 50.0%
GTGTTGGGAGCAAGGAAAGA+TGG - chr4.4:35779400-35779419 MS.gene057702:CDS 50.0%
TACGCGTAGCTATAAGAGCG+TGG + chr4.4:35777856-35777875 None:intergenic 50.0%
TCTGGCGGTTCTTCATCGAA+AGG - chr4.4:35779475-35779494 MS.gene057702:intron 50.0%
TCTTAATGGTGGTTGTCCGG+TGG - chr4.4:35777672-35777691 MS.gene057702:intron 50.0%
TGCCGTTACACAATATGGCC+AGG - chr4.4:35776766-35776785 MS.gene057702:CDS 50.0%
TTGCGGAGAAGATACAACCG+GGG + chr4.4:35778797-35778816 None:intergenic 50.0%
TTGGGAGAGGTCTTTGCAAG+AGG - chr4.4:35778553-35778572 MS.gene057702:CDS 50.0%
! ACGCGTAGCTATAAGAGCGT+GGG + chr4.4:35777855-35777874 None:intergenic 50.0%
! ATGCTGATTGTGGCGAAAGG+AGG - chr4.4:35777610-35777629 MS.gene057702:intron 50.0%
! CATTTGTTGGGAGTTGGGAG+AGG - chr4.4:35778540-35778559 MS.gene057702:CDS 50.0%
! TCATGTATCACTGCCGACTG+TGG - chr4.4:35776937-35776956 MS.gene057702:intron 50.0%
! TGCTGATTGTGGCGAAAGGA+GGG - chr4.4:35777611-35777630 MS.gene057702:intron 50.0%
! TGGTTGTCCGGTGGATTTGA+AGG - chr4.4:35777681-35777700 MS.gene057702:intron 50.0%
! TGTAGTCGGTGTTCGGTCAA+TGG + chr4.4:35778644-35778663 None:intergenic 50.0%
! TTGTCCGGTGGATTTGAAGG+TGG - chr4.4:35777684-35777703 MS.gene057702:intron 50.0%
! TTTTGTGAATACCCCTCCCC+CGG - chr4.4:35778777-35778796 MS.gene057702:intron 50.0%
!! ACTTTTGAGGGTGAATCCGG+TGG + chr4.4:35776827-35776846 None:intergenic 50.0%
!! GCCAAAAAGTGTTGGGAGCA+AGG - chr4.4:35779392-35779411 MS.gene057702:CDS 50.0%
!! TGATATGGGGTTTTGGCGTC+CGG - chr4.4:35777495-35777514 MS.gene057702:intron 50.0%
!!! AGGGGACTGGGAGCATTTTT+TGG - chr4.4:35778357-35778376 MS.gene057702:CDS 50.0%
AACTCCGCTAATGTTGCCGG+CGG + chr4.4:35777000-35777019 None:intergenic 55.0%
AGAAGATACAACCGGGGGAG+GGG + chr4.4:35778791-35778810 None:intergenic 55.0%
ATATGGGCACGAACGCTCTG+CGG - chr4.4:35776892-35776911 MS.gene057702:intron 55.0%
CAAACCGCCGGCAACATTAG+CGG - chr4.4:35776993-35777012 MS.gene057702:intron 55.0%
CTACGTGTGGAAGAGCCTCA+TGG + chr4.4:35778966-35778985 None:intergenic 55.0%
GAGAAGATACAACCGGGGGA+GGG + chr4.4:35778792-35778811 None:intergenic 55.0%
GATTTGGGCGATAGGGGACT+GGG - chr4.4:35778345-35778364 MS.gene057702:CDS 55.0%
TACTTTGCCGGAGCCACAGT+CGG + chr4.4:35776953-35776972 None:intergenic 55.0%
TGCGGAGAAGATACAACCGG+GGG + chr4.4:35778796-35778815 None:intergenic 55.0%
TGGATTTGAAGGTGGCGCGT+GGG - chr4.4:35777692-35777711 MS.gene057702:intron 55.0%
TTCGACCCGACCAAGCTTTC+GGG + chr4.4:35776873-35776892 None:intergenic 55.0%
TTGAGGGTGAATCCGGTGGT+GGG + chr4.4:35776823-35776842 None:intergenic 55.0%
TTTGAGGGTGAATCCGGTGG+TGG + chr4.4:35776824-35776843 None:intergenic 55.0%
! AAGCGCGTGTGAGGCTTTTG+GGG - chr4.4:35777744-35777763 MS.gene057702:intron 55.0%
! CAGCGCTACTGGTTGTCTTG+TGG - chr4.4:35777648-35777667 MS.gene057702:intron 55.0%
! CCGATGCTGATTGTGGCGAA+AGG - chr4.4:35777607-35777626 MS.gene057702:intron 55.0%
! GAAGCGCGTGTGAGGCTTTT+GGG - chr4.4:35777743-35777762 MS.gene057702:intron 55.0%
! TGATTTGGGCGATAGGGGAC+TGG - chr4.4:35778344-35778363 MS.gene057702:CDS 55.0%
!! AGAAGCGCGTGTGAGGCTTT+TGG - chr4.4:35777742-35777761 MS.gene057702:intron 55.0%
!! GATATGGGGTTTTGGCGTCC+GGG - chr4.4:35777496-35777515 MS.gene057702:intron 55.0%
ATCCCCATCCACAGCCTCAC+AGG - chr4.4:35778727-35778746 MS.gene057702:intron 60.0%
CGCGCCACCTTCAAATCCAC+CGG + chr4.4:35777691-35777710 None:intergenic 60.0%
CGCTAATGTTGCCGGCGGTT+TGG + chr4.4:35776995-35777014 None:intergenic 60.0%
GACCTGTGAGGCTGTGGATG+GGG + chr4.4:35778732-35778751 None:intergenic 60.0%
GGACCTGTGAGGCTGTGGAT+GGG + chr4.4:35778733-35778752 None:intergenic 60.0%
GGAGAAGATACAACCGGGGG+AGG + chr4.4:35778793-35778812 None:intergenic 60.0%
GTGGATTTGAAGGTGGCGCG+TGG - chr4.4:35777691-35777710 MS.gene057702:intron 60.0%
TCCGGCAAAGTAGCCTGTGC+CGG - chr4.4:35776961-35776980 MS.gene057702:intron 60.0%
TGAAGGTGGCGCGTGGGAAT+GGG - chr4.4:35777698-35777717 MS.gene057702:intron 60.0%
TGGACCTGTGAGGCTGTGGA+TGG + chr4.4:35778734-35778753 None:intergenic 60.0%
TTGAAGGTGGCGCGTGGGAA+TGG - chr4.4:35777697-35777716 MS.gene057702:intron 60.0%
TTTGGCGTCCGGGTCGTGTT+CGG - chr4.4:35777506-35777525 MS.gene057702:intron 60.0%
! AAAGTAGCCTGTGCCGGTGG+TGG - chr4.4:35776967-35776986 MS.gene057702:intron 60.0%
! ACCGGCACAGGCTACTTTGC+CGG + chr4.4:35776965-35776984 None:intergenic 60.0%
! ATCACTGCCGACTGTGGCTC+CGG - chr4.4:35776943-35776962 MS.gene057702:intron 60.0%
! TGCGTGTAGAAGCGCGTGTG+AGG - chr4.4:35777735-35777754 MS.gene057702:intron 60.0%
! TTCACCTTGAACGGCGCCGA+TGG - chr4.4:35777018-35777037 MS.gene057702:intron 60.0%
!! GTGAATCCGGTGGTGGGTAG+CGG + chr4.4:35776817-35776836 None:intergenic 60.0%
!! TCACCTTGAACGGCGCCGAT+GGG - chr4.4:35777019-35777038 MS.gene057702:intron 60.0%
AGAGGTGGCTGCAGCGCTAC+TGG - chr4.4:35777637-35777656 MS.gene057702:intron 65.0%
CAACCCATCGGCGCCGTTCA+AGG + chr4.4:35777025-35777044 None:intergenic 65.0%
CGTGGGAATGGGAGTGGCAG+TGG - chr4.4:35777709-35777728 MS.gene057702:intron 65.0%
GACACCGACCGAACACGACC+CGG + chr4.4:35777517-35777536 None:intergenic 65.0%
GCGAAAGGAGGGACGAGAGG+TGG - chr4.4:35777622-35777641 MS.gene057702:intron 65.0%
GGCAAAGTAGCCTGTGCCGG+TGG - chr4.4:35776964-35776983 MS.gene057702:intron 65.0%
GTGGCGAAAGGAGGGACGAG+AGG - chr4.4:35777619-35777638 MS.gene057702:intron 65.0%
TTTGGCACCACCACCGGCAC+AGG + chr4.4:35776977-35776996 None:intergenic 65.0%
! GTGGCGCCGGAGAGTAATCC+TGG + chr4.4:35776787-35776806 None:intergenic 65.0%
!! AATCCGGTGGTGGGTAGCGG+CGG + chr4.4:35776814-35776833 None:intergenic 65.0%
!! CTTGAACGGCGCCGATGGGT+TGG - chr4.4:35777023-35777042 MS.gene057702:intron 65.0%
GCGTCCGGGTCGTGTTCGGT+CGG - chr4.4:35777510-35777529 MS.gene057702:intron 70.0%
GTGGCGCGTGGGAATGGGAG+TGG - chr4.4:35777703-35777722 MS.gene057702:intron 70.0%
TAGCGGCGGTGAAGTGGCGC+CGG + chr4.4:35776800-35776819 None:intergenic 70.0%
TCACCGCCGCTACCCACCAC+CGG - chr4.4:35776808-35776827 MS.gene057702:intron 70.0%
! CGGCGGTTTGGCACCACCAC+CGG + chr4.4:35776983-35777002 None:intergenic 70.0%
! CGGTGGTGGTGCCAAACCGC+CGG - chr4.4:35776981-35777000 MS.gene057702:intron 70.0%
! GGTGGGTAGCGGCGGTGAAG+TGG + chr4.4:35776806-35776825 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 35776574 35779615 35776574 ID=MS.gene057702
chr4.4 mRNA 35776574 35779615 35776574 ID=MS.gene057702.t1;Parent=MS.gene057702
chr4.4 exon 35779555 35779615 35779555 ID=MS.gene057702.t1.exon1;Parent=MS.gene057702.t1
chr4.4 CDS 35779555 35779615 35779555 ID=cds.MS.gene057702.t1;Parent=MS.gene057702.t1
chr4.4 exon 35779117 35779458 35779117 ID=MS.gene057702.t1.exon2;Parent=MS.gene057702.t1
chr4.4 CDS 35779117 35779458 35779117 ID=cds.MS.gene057702.t1;Parent=MS.gene057702.t1
chr4.4 exon 35778239 35778593 35778239 ID=MS.gene057702.t1.exon3;Parent=MS.gene057702.t1
chr4.4 CDS 35778239 35778593 35778239 ID=cds.MS.gene057702.t1;Parent=MS.gene057702.t1
chr4.4 exon 35776574 35776796 35776574 ID=MS.gene057702.t1.exon4;Parent=MS.gene057702.t1
chr4.4 CDS 35776574 35776796 35776574 ID=cds.MS.gene057702.t1;Parent=MS.gene057702.t1
Gene Sequence

>MS.gene057702

ATGGGTCGATTTCTTCTCTTTCTCATTTTTCTCAGCTTCCTTACATTATCTTTCCTCTCAGGTAAACAATCTTCGTAAACTCTCAATTTTCAAAAATTGCACTTTAGTCTCTAAATTTTAACTTCACTTTGCTATTTGGTCCTTGAATTATGTTCAGAGGTACAAACAACGTCATTCAAGATTGTAAACAAGTGCCGTTACACAATATGGCCAGGATTACTCTCCGGCGCCACTTCACCGCCGCTACCCACCACCGGATTCACCCTCAAAAGTGGAAATTCAAGGACTGTACAAATCCCGAAAGCTTGGTCGGGTCGAATATGGGCACGAACGCTCTGCGGTCAAGACTCTGACAGAAAGTTTTCATGTATCACTGCCGACTGTGGCTCCGGCAAAGTAGCCTGTGCCGGTGGTGGTGCCAAACCGCCGGCAACATTAGCGGAGTTCACCTTGAACGGCGCCGATGGGTTGGACTTCTACGACGTGAGTTTGGTTGACGGTAAGTGTGTTCGGTGTCTAACACATGTCAGTATCATTGAATTGTATCTATATAAGCACAGATTAGGCATGTCTGGTGTCATATACTTGTGGTGTCCGACACCAACACACCAACATGATTACATTGAATTATTTTATTTTCTAAAAATATTGTTATTATTGGTATAAAGGTTTCACCTTTCTTCAAATTTGATGAAATAGTCAAGTTATTGTTCATTAGCTATATAATTATCTTTCTTTGAGTATTACTTACACTAGTCAAATGAACTATAGCAAGACTTTGCTATCAAGTTAAGTAAGGTTAGATAACTCATTACCCATTGGTCAACAAACTGCATTACTAGGATTCCCAACATAAGCTTCATCAGAGTTACATTTGATTCAATTGGAAACTGGAGGGTTCTATCTATAGGGCTTCTATGATGATATGGGGTTTTGGCGTCCGGGTCGTGTTCGGTCGGTGTCTAAGTATGTTTTTATATAATTATTATATTGTTGTCCTAAAATTTTTGTGTGCTTGATAGGTTATAATATTCCGATGCTGATTGTGGCGAAAGGAGGGACGAGAGGTGGCTGCAGCGCTACTGGTTGTCTTGTGGATCTTAATGGTGGTTGTCCGGTGGATTTGAAGGTGGCGCGTGGGAATGGGAGTGGCAGTGGCGTTGCGTGTAGAAGCGCGTGTGAGGCTTTTGGGGATCCTCGCTATTGTTGTAGTGAGGAGTATTCTACACCTGACACGTGTGGTCCTTCTATTTACTCGCTGTTTTTTAAACATGCTTGCCCACGCTCTTATAGCTACGCGTATGATGATAAGACCAGTACTTACACATGTGCTTCTGCTAACTATTTGATCGTGTTTTGCCCCTTGCCTTATACAAGGTACATACTCTCTTGACTCTCTCATCATTAGCTTCATAACCATTTTTTTAGCTTTTGATTATGCATGAGTTGTTTTGTTAGAGTAAGGGCACCTATGTATCTTAATTAGAGACTATGATTGCTATGGAAGCTCAAGCCAGTTGGATGATGGGCCAAATCCACATTTGCACATGTTTTGTGGACTGGAATTAAGAGTTGAGATATTCTTCATTTCACAGAAAACTCAAATGAAATAGAGTTTCATTATAACATAGTTTTATGTTTATAAAGTCATATAAATATTTAATGTATGTCACATATTTTCAAAATGTATTTCTATATGAATACGAATATATCTATAGTGATAGGAAAAAAAACGGAGAAGATATCTACTCGAATTAAAGGGGTATTGGTTGATTTGGGCGATAGGGGACTGGGAGCATTTTTTGGTGTTACTACTATTGTGTATATATGCTCCAATGAAATGAATGGTTACCATATGCTAATAATTGGATTGTTTCTATCAACATGGCGAGGCACAAGTGATTGATAGTTGAGTCCCTTAACCATTTGTTCCAAAGTTCGATTATTGACTGGTGTTATGGAAAAACATTTGTTGGGAGTTGGGAGAGGTCTTTGCAAGAGGATGCCTTTGATTTAGCAACAAAAAAGAGTCAGATAACATAGGAAAAGAAGATTAGTTTTGTACGACCATTGACCGAACACCGACTACAGAAAAACCATTTTCTACCTTGAATTATGAAAAATAGTTGATTATTTGCATTCTAAGCAATGAAATCCCCATCCACAGCCTCACAGGTCCAAATTACATGGGCTTACATCATACTTTTGTGAATACCCCTCCCCCGGTTGTATCTTCTCCGCAATTTTATATTAGTCATGGGAAAAATATGGTCAGACCTACATGGGTAAAATGGCCAAATGCAGATTACCGGATTAATATGCCTATATTTTAATGTTATGTTAGGGATCCCAAGTTGAATAAATAAAAGTGTTTAATATGGTTTCTAAGCCATGAGGCTCTTCCACACGTAGTGTACTAGTCTCTGGAGCTGCTAGTAGCCTCTTTCTCGAATTCAATTTTATTGTCTAATCTCTCAAACATAAAAAATAAATATGAAACGAACTTGAAATCTTTATTCATGTTCTGCACACGTATCCACATATGTAAAATATGCTTAAAAAATATGCATGCCTTAAAACGTCTTTTATATGTGAGCTTTCTTCCACCAAGTTTCCAAACTTGCTTTTCCTTGTGGTGTTTGGATTTTCCTTGTAGTTTTTTCTTGTAATGGCAAACATCCCTCACTCAAATCACATAAGACAATTTTTTGGGGACATTTACGTCTTTATTAGGTGAATATTTTGTGTACTTCTTTTGAGTAGTTATTATAATTTATAGCATTAATTTATGCATGTATCTTCTGTGGCCTTTTGAGCAGCCAAAAAGTGTTGGGAGCAAGGAAAGATGGAGCACCACTTCCTCTTGTAAACAAAACTATGATGTACTTGTCAAAACAACATTCTGGCGGTTCTTCATCGAAAGGTCTGATCCAAACGCAGATTATAGCTTATGTTACCTCTATTGCTGTGGCGTTTTTCCTGTCATGCCCTTTTAACACTGTTTATGGCTCCCTTTGTATGGACTCTTCAGGCAGAAAGTAA
Protein sequence

>MS.gene057702.t1

MGRFLLFLIFLSFLTLSFLSEVQTTSFKIVNKCRYTIWPGLLSGATSPPLPTTGFTLKSGNSRTVQIPKAWSGRIWARTLCGQDSDRKFSCITADCGSGKVACAGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNIPMLIVAKGGTRGGCSATGCLVDLNGGCPVDLKVARGNGSGSGVACRSACEAFGDPRYCCSEEYSTPDTCGPSIYSLFFKHACPRSYSYAYDDKTSTYTCASANYLIVFCPLPYTSQKVLGARKDGAPLPLVNKTMMYLSKQHSGGSSSKGLIQTQIIAYVTSIAVAFFLSCPFNTVYGSLCMDSSGRK