AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010631

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010631.t1 MTR_5g022310 93.728 287 13 2 3 289 19 300 0.0 545
MS.gene010631.t1 MTR_5g022310 95.378 238 9 1 3 240 19 254 8.67e-167 462
MS.gene010631.t1 MTR_8g037890 72.697 304 53 6 4 284 20 316 2.27e-150 424
MS.gene010631.t1 MTR_8g056820 80.816 245 41 1 1 245 17 255 3.73e-143 403
MS.gene010631.t1 MTR_8g075550 69.395 281 81 3 4 281 22 300 5.27e-136 387
MS.gene010631.t1 MTR_1g025420 68.800 250 71 4 2 250 15 258 1.57e-118 343
MS.gene010631.t1 MTR_1g025420 68.852 244 70 3 2 244 15 253 4.48e-117 337
MS.gene010631.t1 MTR_3g114030 70.417 240 65 3 4 242 1 235 1.06e-116 335
MS.gene010631.t1 MTR_4g073730 57.042 284 110 4 9 284 24 303 1.11e-106 313
MS.gene010631.t1 MTR_4g073730 62.151 251 89 3 9 257 24 270 1.25e-106 311
MS.gene010631.t1 MTR_4g073720 59.912 227 79 3 10 236 25 239 9.23e-90 271
MS.gene010631.t1 MTR_5g022350 57.255 255 91 7 1 252 20 259 1.36e-87 264
MS.gene010631.t1 MTR_8g075510 56.652 233 85 6 9 240 30 247 1.45e-82 249
MS.gene010631.t1 MTR_8g075510 56.769 229 83 6 9 236 30 243 2.46e-81 248
MS.gene010631.t1 MTR_7g102380 51.502 233 104 4 6 237 17 241 1.10e-79 241
MS.gene010631.t1 MTR_2g068030 50.638 235 106 5 4 236 17 243 5.16e-79 240
MS.gene010631.t1 MTR_2g069660 53.165 237 103 4 2 237 14 243 6.80e-79 239
MS.gene010631.t1 MTR_2g068655 50.644 233 107 3 6 237 27 252 3.19e-78 240
MS.gene010631.t1 MTR_8g036215 51.271 236 106 4 1 236 11 237 3.78e-77 234
MS.gene010631.t1 MTR_1g062590 48.945 237 112 4 2 237 14 242 2.85e-76 233
MS.gene010631.t1 MTR_2g067980 48.971 243 112 4 8 246 22 256 4.78e-75 248
MS.gene010631.t1 MTR_6g079580 50.000 236 109 4 2 237 14 240 6.91e-75 229
MS.gene010631.t1 MTR_1g062630 51.464 239 105 5 1 238 15 243 1.20e-74 229
MS.gene010631.t1 MTR_8g107140 52.679 224 97 4 14 237 31 245 3.71e-74 228
MS.gene010631.t1 MTR_1g062340 49.791 239 109 5 1 238 15 243 4.73e-74 227
MS.gene010631.t1 MTR_1g062660 50.628 239 107 5 1 238 15 243 5.50e-74 227
MS.gene010631.t1 MTR_3g111620 53.247 231 98 5 12 241 29 250 1.44e-73 226
MS.gene010631.t1 MTR_1g021945 51.915 235 101 6 9 241 25 249 2.00e-73 226
MS.gene010631.t1 MTR_1g062350 49.372 239 110 5 1 238 15 243 4.64e-72 222
MS.gene010631.t1 MTR_1g062370 48.536 239 112 5 1 238 15 243 1.48e-71 221
MS.gene010631.t1 MTR_7g062610 46.058 241 117 5 1 240 17 245 3.20e-68 212
MS.gene010631.t1 MTR_5g059200 48.246 228 102 6 9 236 28 239 1.16e-66 209
MS.gene010631.t1 MTR_3g068015 44.304 237 121 5 3 237 21 248 8.59e-64 201
MS.gene010631.t1 MTR_5g023850 45.565 248 90 5 1 244 17 223 1.30e-63 200
MS.gene010631.t1 MTR_6g009480 43.220 236 126 4 4 237 23 252 4.24e-60 192
MS.gene010631.t1 MTR_1g062690 43.515 239 100 6 1 238 15 219 2.09e-56 181
MS.gene010631.t1 MTR_4g063630 42.083 240 127 8 1 236 20 251 5.35e-56 181
MS.gene010631.t1 MTR_2g067990 42.798 243 105 7 5 246 22 231 5.17e-54 189
MS.gene010631.t1 MTR_5g010635 39.914 233 110 8 7 237 21 225 2.03e-46 156
MS.gene010631.t1 MTR_5g010640 40.083 242 112 9 4 237 20 236 2.34e-46 156
MS.gene010631.t1 MTR_2g067970 45.026 191 94 6 53 240 3 185 6.25e-46 165
MS.gene010631.t1 MTR_8g096900 38.912 239 115 8 1 237 39 248 1.35e-42 146
MS.gene010631.t1 MTR_2g063150 34.783 230 126 6 1 229 36 242 6.63e-40 140
MS.gene010631.t1 MTR_5g022350 54.887 133 54 3 10 142 96 222 3.15e-38 134
MS.gene010631.t1 MTR_8g089020 48.889 135 58 3 95 229 33 156 3.53e-36 127
MS.gene010631.t1 MTR_7g076360 35.616 219 71 4 9 227 7 155 4.34e-32 117
MS.gene010631.t1 MTR_1g062390 33.333 243 138 9 1 237 14 238 1.84e-31 117
MS.gene010631.t1 MTR_8g096910 44.882 127 56 5 2 125 14 129 9.16e-25 98.2
MS.gene010631.t1 MTR_3g081550 48.544 103 48 2 91 193 12 109 6.89e-22 88.6
MS.gene010631.t1 MTR_8g096920 40.945 127 65 4 2 127 11 128 1.90e-20 86.7
MS.gene010631.t1 MTR_1g062640 42.222 90 49 2 63 152 60 146 6.36e-16 73.9
MS.gene010631.t1 MTR_2g063160 36.170 94 56 3 14 105 18 109 1.56e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010631.t1 AT4G36010 59.028 288 107 4 6 288 19 300 1.46e-115 335
MS.gene010631.t1 AT4G36010 59.028 288 107 4 6 288 19 300 1.46e-115 335
MS.gene010631.t1 AT1G75800 64.173 254 86 4 2 254 15 264 8.43e-113 329
MS.gene010631.t1 AT2G17860 64.876 242 80 3 1 240 14 252 1.48e-110 320
MS.gene010631.t1 AT1G20030 66.667 240 72 4 6 242 16 250 6.79e-108 316
MS.gene010631.t1 AT1G20030 67.089 237 70 4 9 242 2 233 1.46e-107 314
MS.gene010631.t1 AT4G38670 64.050 242 80 4 11 250 24 260 1.45e-104 306
MS.gene010631.t1 AT4G38670 64.050 242 80 4 11 250 24 260 1.45e-104 306
MS.gene010631.t1 AT4G38670 64.050 242 80 4 11 250 8 244 4.46e-104 304
MS.gene010631.t1 AT4G38660 56.506 269 94 5 1 258 21 277 1.28e-97 291
MS.gene010631.t1 AT4G38660 56.180 267 94 5 3 258 1 255 1.10e-96 288
MS.gene010631.t1 AT4G24180 58.039 255 88 6 1 247 19 262 6.12e-91 272
MS.gene010631.t1 AT4G24180 58.268 254 87 6 2 247 25 267 8.36e-91 272
MS.gene010631.t1 AT4G24180 58.776 245 83 5 1 238 19 252 1.25e-90 270
MS.gene010631.t1 AT4G24180 59.016 244 82 5 2 238 25 257 1.44e-90 270
MS.gene010631.t1 AT5G24620 56.962 237 99 3 2 237 17 251 7.25e-87 266
MS.gene010631.t1 AT5G24620 56.962 237 99 3 2 237 72 306 1.81e-86 266
MS.gene010631.t1 AT5G24620 56.962 237 99 3 2 237 93 327 2.26e-86 267
MS.gene010631.t1 AT5G38280 52.479 242 111 2 2 242 17 255 2.59e-84 266
MS.gene010631.t1 AT5G38280 52.479 242 111 2 2 242 17 255 5.34e-84 265
MS.gene010631.t1 AT4G24180 57.018 228 80 5 2 222 25 241 4.99e-79 243
MS.gene010631.t1 AT4G24180 56.769 229 81 5 1 222 19 236 6.47e-79 242
MS.gene010631.t1 AT1G75040 55.459 229 90 5 9 237 23 239 1.27e-78 238
MS.gene010631.t1 AT1G19320 53.247 231 94 5 10 236 26 246 4.62e-78 238
MS.gene010631.t1 AT1G75030 53.219 233 99 7 9 240 23 246 3.57e-77 235
MS.gene010631.t1 AT1G75050 52.766 235 102 5 4 238 19 244 1.16e-76 234
MS.gene010631.t1 AT1G73620 52.402 229 100 4 9 237 41 260 4.70e-76 233
MS.gene010631.t1 AT1G18250 51.515 231 103 4 7 237 19 240 3.93e-75 230
MS.gene010631.t1 AT1G18250 51.528 229 102 4 9 237 20 239 7.15e-75 229
MS.gene010631.t1 AT1G77700 49.561 228 99 6 9 236 60 271 6.29e-70 219
MS.gene010631.t1 AT1G77700 49.561 228 99 6 9 236 60 271 8.48e-70 219
MS.gene010631.t1 AT1G77700 49.561 228 99 6 9 236 88 299 1.35e-69 219
MS.gene010631.t1 AT4G36000 65.089 169 41 4 86 254 1 151 3.65e-67 208
MS.gene010631.t1 AT4G36000 65.089 169 41 4 86 254 1 151 3.65e-67 208
MS.gene010631.t1 AT5G02140 42.146 261 134 4 10 261 21 273 1.02e-63 202
MS.gene010631.t1 AT5G02140 44.978 229 117 3 10 237 21 241 3.52e-63 199
MS.gene010631.t1 AT4G18253 43.621 243 121 5 2 242 15 243 1.44e-59 190
MS.gene010631.t1 AT2G28790 45.852 229 111 7 12 236 29 248 1.52e-59 190
MS.gene010631.t1 AT2G28790 45.852 229 111 7 12 236 54 273 2.02e-59 191
MS.gene010631.t1 AT5G40020 41.202 233 128 4 7 238 25 249 9.27e-59 188
MS.gene010631.t1 AT1G70250 44.118 238 118 7 9 241 144 371 1.48e-58 200
MS.gene010631.t1 AT4G18250 39.792 289 155 8 2 286 48 321 1.07e-55 191
MS.gene010631.t1 AT4G11650 40.756 238 112 8 1 237 14 223 4.51e-50 166
MS.gene010631.t1 AT5G24620 61.983 121 45 1 117 237 15 134 4.66e-44 152
MS.gene010631.t1 AT2G24810 56.627 83 30 1 154 236 116 192 5.02e-26 102

Find 89 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTGGTCCGGCCGTCTA+TGG 0.154698 5.1:+13343191 MS.gene010631:CDS
TTTAACATGTTAATTATTAC+AGG 0.291237 5.1:+13343025 None:intergenic
TATTGCTGCAGTGGCGCTTA+TGG 0.293843 5.1:+13343580 MS.gene010631:CDS
GAATGCAGTTCAATCAAATC+TGG 0.324954 5.1:+13344375 MS.gene010631:intron
CTCTCGCCGTACCACCTTCC+TGG 0.328480 5.1:+13343176 MS.gene010631:CDS
ACAAAGCCAGTGGTGGAAAA+TGG 0.334305 5.1:-13343130 None:intergenic
AAAGCGCGTGTGAAGCGTTT+GGG 0.355433 5.1:+13343548 MS.gene010631:CDS
CCGTGTGGTTCGATCAATAT+CGG 0.357683 5.1:-13343400 None:intergenic
ACAATTGCGGTTACACAGTT+TGG 0.365361 5.1:+13343077 MS.gene010631:CDS
TTCCTGGTCCGGCCGTCTAT+GGG 0.378883 5.1:+13343192 MS.gene010631:CDS
GGCGGAAACTGCACGGCAAC+GGG 0.381206 5.1:+13343433 MS.gene010631:CDS
GAACTTGGTTTACACGTATC+AGG 0.390219 5.1:-13343607 None:intergenic
TATAGTTATGCTTATGATGA+TGG 0.395195 5.1:+13343667 MS.gene010631:CDS
GAATTCACCCTCAACGGTTC+CGG 0.396695 5.1:+13343331 MS.gene010631:CDS
CCGGCGCCGGATAAAATTCC+CGG 0.403457 5.1:-13343100 None:intergenic
ATCGAACCACACGGTGAAAC+CGG 0.404042 5.1:+13343409 MS.gene010631:CDS
CGGTGGTATAGCGTTTCTTC+CGG 0.406204 5.1:-13343296 None:intergenic
TGCCGTGCAGTTTCCGCCGC+CGG 0.412387 5.1:-13343428 None:intergenic
GGTGGAAAATGGTTCTGTTC+CGG 0.421576 5.1:-13343119 None:intergenic
GTGAATTCTGCTAATGTTGC+CGG 0.433552 5.1:-13343316 None:intergenic
AAAAGCGCGTGTGAAGCGTT+TGG 0.451521 5.1:+13343547 MS.gene010631:CDS
AAATTACCTTGTGGAGGGTG+TGG 0.467285 5.1:-13343740 None:intergenic
CTTTGGTGGTTGAACGGTTG+TGG 0.468098 5.1:+13344502 MS.gene010631:CDS
AAGTCCTCCGGAACCGTTGA+GGG 0.477120 5.1:-13343338 None:intergenic
GGAAAATTCTCATGCATCAC+CGG 0.483024 5.1:+13343244 MS.gene010631:CDS
CGGCGGAAACTGCACGGCAA+CGG 0.484219 5.1:+13343432 MS.gene010631:CDS
AAAATATCCTGTGCCAGCTA+TGG 0.489991 5.1:+13344404 MS.gene010631:CDS
AAATGGTTCTGTTCCGGCGC+CGG 0.498676 5.1:-13343113 None:intergenic
GTGCCAGCTATGGACGTGTC+TGG 0.501086 5.1:+13344414 MS.gene010631:CDS
TTGCGGTTACACAGTTTGGC+CGG 0.509361 5.1:+13343081 MS.gene010631:CDS
TCCCCATAGACGGCCGGACC+AGG 0.512156 5.1:-13343194 None:intergenic
ACACCAGACACGTCCATAGC+TGG 0.514018 5.1:-13344417 None:intergenic
TGCGGTTACACAGTTTGGCC+GGG 0.517234 5.1:+13343082 MS.gene010631:CDS
GTTTCTTCCGGCACATTCGA+TGG 0.519305 5.1:-13343284 None:intergenic
GCCGTACCACCTTCCTGGTC+CGG 0.527655 5.1:+13343181 MS.gene010631:CDS
TTCACAATTGTGAACAATTG+CGG 0.527708 5.1:+13343064 MS.gene010631:CDS
CCGCCGCCGGTTTCACCGTG+TGG 0.538076 5.1:-13343415 None:intergenic
TGACGGCTTTGGTGGTTGAA+CGG 0.539340 5.1:+13344496 MS.gene010631:CDS
GAGCATTGGACTCGCCTGGT+TGG 0.540451 5.1:-13343156 None:intergenic
AATTACCTTGTGGAGGGTGT+GGG 0.540652 5.1:-13343739 None:intergenic
AGGTGGTACGGCGAGAGCAT+TGG 0.541503 5.1:-13343170 None:intergenic
CGTGTGGTTCGATCAATATC+GGG 0.545709 5.1:-13343399 None:intergenic
GCGAGAGCATTGGACTCGCC+TGG 0.545792 5.1:-13343160 None:intergenic
CTTGAACGCGGCGTGTCCGA+CGG 0.547717 5.1:+13343468 MS.gene010631:CDS
TCCGGCACATTCGATGGTGG+AGG 0.550974 5.1:-13343278 None:intergenic
AATGCAGTTCAATCAAATCT+GGG 0.551133 5.1:+13344376 MS.gene010631:intron
TCCTCCACCATCGAATGTGC+CGG 0.552071 5.1:+13343277 MS.gene010631:CDS
AAGCGCGTGTGAAGCGTTTG+GGG 0.554522 5.1:+13343549 MS.gene010631:CDS
GATCCGCAATATTGCTGCAG+TGG 0.557457 5.1:+13343571 MS.gene010631:CDS
TCCTGGTCCGGCCGTCTATG+GGG 0.558236 5.1:+13343193 MS.gene010631:CDS
GTCGAAGAAATCAAGTCCTC+CGG 0.560323 5.1:-13343350 None:intergenic
ACTGGCTTTGTTCTCCAACC+AGG 0.573046 5.1:+13343142 MS.gene010631:CDS
AGTGTGTTCTTCCCCATAGA+CGG 0.573847 5.1:-13343204 None:intergenic
AGTAGTAGTAATAGCGGCGG+AGG 0.580917 5.1:+13343505 MS.gene010631:CDS
AAGTGAAAATTACCTTGTGG+AGG 0.581305 5.1:-13343746 None:intergenic
CTCATCACTTTCAACTCCGT+CGG 0.583041 5.1:-13343484 None:intergenic
GCCGGACCAGGAAGGTGGTA+CGG 0.586452 5.1:-13343182 None:intergenic
ATTACCTTGTGGAGGGTGTG+GGG 0.591516 5.1:-13343738 None:intergenic
AACCGGCGGCGGAAACTGCA+CGG 0.591968 5.1:+13343426 MS.gene010631:CDS
CACCAAAGCCGTCAAAACAA+AGG 0.604676 5.1:-13344487 None:intergenic
CATAGACGGCCGGACCAGGA+AGG 0.605211 5.1:-13343190 None:intergenic
TGTTCTTCCCCATAGACGGC+CGG 0.605353 5.1:-13343200 None:intergenic
CCACACGGTGAAACCGGCGG+CGG 0.608059 5.1:+13343415 MS.gene010631:CDS
TTAGCAGAATTCACCCTCAA+CGG 0.609111 5.1:+13343325 MS.gene010631:CDS
GCGCCACTGCAGCAATATTG+CGG 0.611330 5.1:-13343574 None:intergenic
AGTGAAAATTACCTTGTGGA+GGG 0.612016 5.1:-13343745 None:intergenic
CACTGCTCACAAGACCCCAC+CGG 0.612276 5.1:+13343223 MS.gene010631:CDS
CAAGTCCTCCGGAACCGTTG+AGG 0.616426 5.1:-13343339 None:intergenic
CGTGTCTGGTGTTCGACACG+TGG 0.618353 5.1:+13344428 MS.gene010631:CDS
GACACGTCCATAGCTGGCAC+AGG 0.618382 5.1:-13344411 None:intergenic
TTCACCCTCAACGGTTCCGG+AGG 0.618797 5.1:+13343334 MS.gene010631:CDS
TTCGACGTTAGTCTCGTCGA+CGG 0.621410 5.1:+13343367 MS.gene010631:CDS
CGGCGGAGGTGAAGAGAGCG+TGG 0.621463 5.1:+13343519 MS.gene010631:CDS
ACACGCCGCGTTCAAGTCGA+CGG 0.623825 5.1:-13343461 None:intergenic
CGGAAGAAACGCTATACCAC+CGG 0.628933 5.1:+13343297 MS.gene010631:CDS
TCTTCCGGCACATTCGATGG+TGG 0.630194 5.1:-13343281 None:intergenic
TTTGCCCCACACCCTCCACA+AGG 0.630850 5.1:+13343734 MS.gene010631:CDS
GGTGGAGGAATCACAGTCGC+CGG 0.634571 5.1:-13343263 None:intergenic
AGTTCAATCAAATCTGGGAA+CGG 0.635581 5.1:+13344381 MS.gene010631:intron
AGACGGCCGGACCAGGAAGG+TGG 0.639557 5.1:-13343187 None:intergenic
TTGGAGAACAAAGCCAGTGG+TGG 0.641484 5.1:-13343137 None:intergenic
ATGAGTAGTAGTAATAGCGG+CGG 0.652951 5.1:+13343502 MS.gene010631:CDS
GAACCACACGGTGAAACCGG+CGG 0.655360 5.1:+13343412 MS.gene010631:CDS
TTGCTCCGTCGACTTGAACG+CGG 0.663114 5.1:+13343456 MS.gene010631:CDS
CCGATATTGATCGAACCACA+CGG 0.663725 5.1:+13343400 MS.gene010631:CDS
GTGATGAGTAGTAGTAATAG+CGG 0.671487 5.1:+13343499 MS.gene010631:CDS
TAAGCATAACTATAAGCGCG+TGG 0.672663 5.1:-13343658 None:intergenic
AATTCTGCTAATGTTGCCGG+TGG 0.685668 5.1:-13343313 None:intergenic
TGGTTGGAGAACAAAGCCAG+TGG 0.701952 5.1:-13343140 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAATTAAATTAAAAAA+AGG - chr5.1:13344063-13344082 None:intergenic 0.0%
!! TTTATTTATTTATTTATATA+TGG + chr5.1:13344181-13344200 MS.gene010631:intron 0.0%
!! CATAACAAAAAAAAAAAATC+TGG - chr5.1:13344217-13344236 None:intergenic 15.0%
!!! CTTTTACTAAAAAAAATTTC+TGG - chr5.1:13343854-13343873 None:intergenic 15.0%
!! TTTGTTAATCAACTAATGAT+TGG + chr5.1:13343971-13343990 MS.gene010631:intron 20.0%
!!! CTTTTCAAAATGAATGTAAT+TGG + chr5.1:13343816-13343835 MS.gene010631:intron 20.0%
! AAAAAGTGAAAATTACCTTG+TGG - chr5.1:13343752-13343771 None:intergenic 25.0%
! CAAAAAAAAAAAATCTGGCA+TGG - chr5.1:13344212-13344231 None:intergenic 25.0%
! GTGATAAGTTATTGAAGAAA+AGG - chr5.1:13343785-13343804 None:intergenic 25.0%
! TATAGTTATGCTTATGATGA+TGG + chr5.1:13343667-13343686 MS.gene010631:CDS 25.0%
AAAAAAAAATCTGGCATGGA+CGG - chr5.1:13344208-13344227 None:intergenic 30.0%
AATGCAGTTCAATCAAATCT+GGG + chr5.1:13344376-13344395 MS.gene010631:intron 30.0%
ATAGAGAAAGTTGAATGTCA+AGG + chr5.1:13344084-13344103 MS.gene010631:intron 30.0%
CACAAAAACTAACTCATACA+CGG - chr5.1:13344277-13344296 None:intergenic 30.0%
TTCACAATTGTGAACAATTG+CGG + chr5.1:13343064-13343083 MS.gene010631:CDS 30.0%
!! TACACGGAATGTTTTATTGA+TGG - chr5.1:13344261-13344280 None:intergenic 30.0%
!! TGTTTTATTGATGGTACATC+TGG - chr5.1:13344252-13344271 None:intergenic 30.0%
!!! GTTAAAACGTGTTTTGAGAT+AGG + chr5.1:13344011-13344030 MS.gene010631:intron 30.0%
!!! TGTTATTGCCTTTGTTTTGA+CGG + chr5.1:13344479-13344498 MS.gene010631:CDS 30.0%
AAGTGAAAATTACCTTGTGG+AGG - chr5.1:13343749-13343768 None:intergenic 35.0%
ACTCTTAAAAAACTGCGAGT+AGG - chr5.1:13343632-13343651 None:intergenic 35.0%
AGAAAGTTGAATGTCAAGGA+GGG + chr5.1:13344088-13344107 MS.gene010631:intron 35.0%
AGTGAAAATTACCTTGTGGA+GGG - chr5.1:13343748-13343767 None:intergenic 35.0%
AGTTCAATCAAATCTGGGAA+CGG + chr5.1:13344381-13344400 MS.gene010631:intron 35.0%
GAATGCAGTTCAATCAAATC+TGG + chr5.1:13344375-13344394 MS.gene010631:intron 35.0%
GTGATGAGTAGTAGTAATAG+CGG + chr5.1:13343499-13343518 MS.gene010631:CDS 35.0%
AAAAACTGCGAGTAGGAACT+TGG - chr5.1:13343625-13343644 None:intergenic 40.0%
AAAATATCCTGTGCCAGCTA+TGG + chr5.1:13344404-13344423 MS.gene010631:CDS 40.0%
ACAATTGCGGTTACACAGTT+TGG + chr5.1:13343077-13343096 MS.gene010631:CDS 40.0%
ATACCACACCATAACAGCAA+CGG - chr5.1:13344117-13344136 None:intergenic 40.0%
ATGAGTAGTAGTAATAGCGG+CGG + chr5.1:13343502-13343521 MS.gene010631:CDS 40.0%
CAACGTGACAACCATATCTA+AGG - chr5.1:13344142-13344161 None:intergenic 40.0%
GAAAGTTGAATGTCAAGGAG+GGG + chr5.1:13344089-13344108 MS.gene010631:intron 40.0%
GAACTTGGTTTACACGTATC+AGG - chr5.1:13343610-13343629 None:intergenic 40.0%
GAGAAAGTTGAATGTCAAGG+AGG + chr5.1:13344087-13344106 MS.gene010631:intron 40.0%
GGAAAATTCTCATGCATCAC+CGG + chr5.1:13343244-13343263 MS.gene010631:CDS 40.0%
GTGAATTCTGCTAATGTTGC+CGG - chr5.1:13343319-13343338 None:intergenic 40.0%
GTGTGGTATCACCTTAGATA+TGG + chr5.1:13344128-13344147 MS.gene010631:intron 40.0%
TAAGCATAACTATAAGCGCG+TGG - chr5.1:13343661-13343680 None:intergenic 40.0%
TTAGCAGAATTCACCCTCAA+CGG + chr5.1:13343325-13343344 MS.gene010631:CDS 40.0%
! ATGCATGAGAATTTTCCGGT+GGG - chr5.1:13343241-13343260 None:intergenic 40.0%
! GGTGATGCATGAGAATTTTC+CGG - chr5.1:13343245-13343264 None:intergenic 40.0%
! TATTGATGGTACATCTGGCA+TGG - chr5.1:13344247-13344266 None:intergenic 40.0%
AAATTACCTTGTGGAGGGTG+TGG - chr5.1:13343743-13343762 None:intergenic 45.0%
AATTCTGCTAATGTTGCCGG+TGG - chr5.1:13343316-13343335 None:intergenic 45.0%
AGTGTGTTCTTCCCCATAGA+CGG - chr5.1:13343207-13343226 None:intergenic 45.0%
CACCAAAGCCGTCAAAACAA+AGG - chr5.1:13344490-13344509 None:intergenic 45.0%
CCGATATTGATCGAACCACA+CGG + chr5.1:13343400-13343419 MS.gene010631:CDS 45.0%
CCGTGTGGTTCGATCAATAT+CGG - chr5.1:13343403-13343422 None:intergenic 45.0%
CGTGTGGTTCGATCAATATC+GGG - chr5.1:13343402-13343421 None:intergenic 45.0%
CTCATCACTTTCAACTCCGT+CGG - chr5.1:13343487-13343506 None:intergenic 45.0%
GTCGAAGAAATCAAGTCCTC+CGG - chr5.1:13343353-13343372 None:intergenic 45.0%
TTGTGTAGCTAGCTACTAGC+TGG + chr5.1:13344292-13344311 MS.gene010631:intron 45.0%
! AATTACCTTGTGGAGGGTGT+GGG - chr5.1:13343742-13343761 None:intergenic 45.0%
! ACAAAGCCAGTGGTGGAAAA+TGG - chr5.1:13343133-13343152 None:intergenic 45.0%
! ACAGAACCATTTTCCACCAC+TGG + chr5.1:13343124-13343143 MS.gene010631:CDS 45.0%
! GATGCATGAGAATTTTCCGG+TGG - chr5.1:13343242-13343261 None:intergenic 45.0%
! GGTGGAAAATGGTTCTGTTC+CGG - chr5.1:13343122-13343141 None:intergenic 45.0%
! GTTTGGCCGGGAATTTTATC+CGG + chr5.1:13343094-13343113 MS.gene010631:CDS 45.0%
! TGCATGAGAATTTTCCGGTG+GGG - chr5.1:13343240-13343259 None:intergenic 45.0%
!!! CTTTGTTTTGACGGCTTTGG+TGG + chr5.1:13344488-13344507 MS.gene010631:CDS 45.0%
!!! TGCCTTTGTTTTGACGGCTT+TGG + chr5.1:13344485-13344504 MS.gene010631:CDS 45.0%
AGTAGTAGTAATAGCGGCGG+AGG + chr5.1:13343505-13343524 MS.gene010631:CDS 50.0%
ATCGAACCACACGGTGAAAC+CGG + chr5.1:13343409-13343428 MS.gene010631:CDS 50.0%
CGGAAGAAACGCTATACCAC+CGG + chr5.1:13343297-13343316 MS.gene010631:CDS 50.0%
CGGTGGTATAGCGTTTCTTC+CGG - chr5.1:13343299-13343318 None:intergenic 50.0%
GAATTCACCCTCAACGGTTC+CGG + chr5.1:13343331-13343350 MS.gene010631:CDS 50.0%
GATCCGCAATATTGCTGCAG+TGG + chr5.1:13343571-13343590 MS.gene010631:CDS 50.0%
GTTTCTTCCGGCACATTCGA+TGG - chr5.1:13343287-13343306 None:intergenic 50.0%
TATTGCTGCAGTGGCGCTTA+TGG + chr5.1:13343580-13343599 MS.gene010631:CDS 50.0%
TGGTTGGAGAACAAAGCCAG+TGG - chr5.1:13343143-13343162 None:intergenic 50.0%
TTGCGGTTACACAGTTTGGC+CGG + chr5.1:13343081-13343100 MS.gene010631:CDS 50.0%
TTGGAGAACAAAGCCAGTGG+TGG - chr5.1:13343140-13343159 None:intergenic 50.0%
! AAAAGCGCGTGTGAAGCGTT+TGG + chr5.1:13343547-13343566 MS.gene010631:CDS 50.0%
! AAAGCGCGTGTGAAGCGTTT+GGG + chr5.1:13343548-13343567 MS.gene010631:CDS 50.0%
! ATTACCTTGTGGAGGGTGTG+GGG - chr5.1:13343741-13343760 None:intergenic 50.0%
! CTTTGGTGGTTGAACGGTTG+TGG + chr5.1:13344502-13344521 MS.gene010631:CDS 50.0%
! GAACCGTTGCTGTTATGGTG+TGG + chr5.1:13344111-13344130 MS.gene010631:intron 50.0%
! TGACGGCTTTGGTGGTTGAA+CGG + chr5.1:13344496-13344515 MS.gene010631:CDS 50.0%
! TTCGACGTTAGTCTCGTCGA+CGG + chr5.1:13343367-13343386 MS.gene010631:CDS 50.0%
!! ACTGGCTTTGTTCTCCAACC+AGG + chr5.1:13343142-13343161 MS.gene010631:CDS 50.0%
AAGTCCTCCGGAACCGTTGA+GGG - chr5.1:13343341-13343360 None:intergenic 55.0%
ACACCAGACACGTCCATAGC+TGG - chr5.1:13344420-13344439 None:intergenic 55.0%
GCGCCACTGCAGCAATATTG+CGG - chr5.1:13343577-13343596 None:intergenic 55.0%
GGGTGTGGGGCAAAAAGTGA+TGG - chr5.1:13343728-13343747 None:intergenic 55.0%
TCCTCCACCATCGAATGTGC+CGG + chr5.1:13343277-13343296 MS.gene010631:CDS 55.0%
TCTTCCGGCACATTCGATGG+TGG - chr5.1:13343284-13343303 None:intergenic 55.0%
TGCGGTTACACAGTTTGGCC+GGG + chr5.1:13343082-13343101 MS.gene010631:CDS 55.0%
TGTTCTTCCCCATAGACGGC+CGG - chr5.1:13343203-13343222 None:intergenic 55.0%
! AAATGGTTCTGTTCCGGCGC+CGG - chr5.1:13343116-13343135 None:intergenic 55.0%
! AAGCGCGTGTGAAGCGTTTG+GGG + chr5.1:13343549-13343568 MS.gene010631:CDS 55.0%
! GAGGGGAACCGTTGCTGTTA+TGG + chr5.1:13344106-13344125 MS.gene010631:intron 55.0%
!! TTGCTCCGTCGACTTGAACG+CGG + chr5.1:13343456-13343475 MS.gene010631:CDS 55.0%
ACACGCCGCGTTCAAGTCGA+CGG - chr5.1:13343464-13343483 None:intergenic 60.0%
CAAGTCCTCCGGAACCGTTG+AGG - chr5.1:13343342-13343361 None:intergenic 60.0%
CACTGCTCACAAGACCCCAC+CGG + chr5.1:13343223-13343242 MS.gene010631:CDS 60.0%
CGTGTCTGGTGTTCGACACG+TGG + chr5.1:13344428-13344447 MS.gene010631:CDS 60.0%
GAACCACACGGTGAAACCGG+CGG + chr5.1:13343412-13343431 MS.gene010631:CDS 60.0%
GACACGTCCATAGCTGGCAC+AGG - chr5.1:13344414-13344433 None:intergenic 60.0%
GGTGGAGGAATCACAGTCGC+CGG - chr5.1:13343266-13343285 None:intergenic 60.0%
GTGCCAGCTATGGACGTGTC+TGG + chr5.1:13344414-13344433 MS.gene010631:CDS 60.0%
TTCACCCTCAACGGTTCCGG+AGG + chr5.1:13343334-13343353 MS.gene010631:CDS 60.0%
TTCCTGGTCCGGCCGTCTAT+GGG + chr5.1:13343192-13343211 MS.gene010631:CDS 60.0%
TTTGCCCCACACCCTCCACA+AGG + chr5.1:13343734-13343753 MS.gene010631:CDS 60.0%
! AGGTGGTACGGCGAGAGCAT+TGG - chr5.1:13343173-13343192 None:intergenic 60.0%
! CCGGCGCCGGATAAAATTCC+CGG - chr5.1:13343103-13343122 None:intergenic 60.0%
! CCGGGAATTTTATCCGGCGC+CGG + chr5.1:13343100-13343119 MS.gene010631:CDS 60.0%
! TCCGGCACATTCGATGGTGG+AGG - chr5.1:13343281-13343300 None:intergenic 60.0%
!! GAGCATTGGACTCGCCTGGT+TGG - chr5.1:13343159-13343178 None:intergenic 60.0%
AACCGGCGGCGGAAACTGCA+CGG + chr5.1:13343426-13343445 MS.gene010631:CDS 65.0%
CATAGACGGCCGGACCAGGA+AGG - chr5.1:13343193-13343212 None:intergenic 65.0%
CGGCGGAAACTGCACGGCAA+CGG + chr5.1:13343432-13343451 MS.gene010631:CDS 65.0%
CTCTCGCCGTACCACCTTCC+TGG + chr5.1:13343176-13343195 MS.gene010631:CDS 65.0%
CTTCCTGGTCCGGCCGTCTA+TGG + chr5.1:13343191-13343210 MS.gene010631:CDS 65.0%
CTTGAACGCGGCGTGTCCGA+CGG + chr5.1:13343468-13343487 MS.gene010631:CDS 65.0%
GCCGGACCAGGAAGGTGGTA+CGG - chr5.1:13343185-13343204 None:intergenic 65.0%
GCCGTACCACCTTCCTGGTC+CGG + chr5.1:13343181-13343200 MS.gene010631:CDS 65.0%
GGCGGAAACTGCACGGCAAC+GGG + chr5.1:13343433-13343452 MS.gene010631:CDS 65.0%
TCCTGGTCCGGCCGTCTATG+GGG + chr5.1:13343193-13343212 MS.gene010631:CDS 65.0%
!! GCGAGAGCATTGGACTCGCC+TGG - chr5.1:13343163-13343182 None:intergenic 65.0%
AGACGGCCGGACCAGGAAGG+TGG - chr5.1:13343190-13343209 None:intergenic 70.0%
CCACACGGTGAAACCGGCGG+CGG + chr5.1:13343415-13343434 MS.gene010631:CDS 70.0%
CGGCGGAGGTGAAGAGAGCG+TGG + chr5.1:13343519-13343538 MS.gene010631:CDS 70.0%
TCCCCATAGACGGCCGGACC+AGG - chr5.1:13343197-13343216 None:intergenic 70.0%
TGCCGTGCAGTTTCCGCCGC+CGG - chr5.1:13343431-13343450 None:intergenic 70.0%
!! CCGCCGCCGGTTTCACCGTG+TGG - chr5.1:13343418-13343437 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 13343031 13344527 13343031 ID=MS.gene010631
chr5.1 mRNA 13343031 13344527 13343031 ID=MS.gene010631.t1;Parent=MS.gene010631
chr5.1 exon 13343031 13343755 13343031 ID=MS.gene010631.t1.exon1;Parent=MS.gene010631.t1
chr5.1 CDS 13343031 13343755 13343031 ID=cds.MS.gene010631.t1;Parent=MS.gene010631.t1
chr5.1 exon 13344383 13344527 13344383 ID=MS.gene010631.t1.exon2;Parent=MS.gene010631.t1
chr5.1 CDS 13344383 13344527 13344383 ID=cds.MS.gene010631.t1;Parent=MS.gene010631.t1
Gene Sequence

>MS.gene010631

ATGTTAATTATTACAGGTTCATATTCATCAACATTCACAATTGTGAACAATTGCGGTTACACAGTTTGGCCGGGAATTTTATCCGGCGCCGGAACAGAACCATTTTCCACCACTGGCTTTGTTCTCCAACCAGGCGAGTCCAATGCTCTCGCCGTACCACCTTCCTGGTCCGGCCGTCTATGGGGAAGAACACACTGCTCACAAGACCCCACCGGAAAATTCTCATGCATCACCGGCGACTGTGATTCCTCCACCATCGAATGTGCCGGAAGAAACGCTATACCACCGGCAACATTAGCAGAATTCACCCTCAACGGTTCCGGAGGACTTGATTTCTTCGACGTTAGTCTCGTCGACGGTTACAATCTCCCGATATTGATCGAACCACACGGTGAAACCGGCGGCGGAAACTGCACGGCAACGGGTTGCTCCGTCGACTTGAACGCGGCGTGTCCGACGGAGTTGAAAGTGATGAGTAGTAGTAATAGCGGCGGAGGTGAAGAGAGCGTGGCGTGTAAAAGCGCGTGTGAAGCGTTTGGGGATCCGCAATATTGCTGCAGTGGCGCTTATGGTTCGCCTGATACGTGTAAACCAAGTTCCTACTCGCAGTTTTTTAAGAGTGCGTGTCCACGCGCTTATAGTTATGCTTATGATGATGGAACTAGCACTTTCACTTGTGCTTCTGCTGATTATACCATCACTTTTTGCCCCACACCCTCCACAAGGTAATTTTCACTTTTTTTACTGTTTACCTTTTCTTCAATAACTTATCACAATTTTCTTTTCTTTTCAAAATGAATGTAATTGGTTGTCAAAAAGACCAGAAATTTTTTTTAGTAAAAGATGCAAAGATATTTGATATGTTAGAATACGAGATTCGAACATTTGATTTTAGTGTGAATGAATTTTGTCGCTAAATATTTTAGAGTAAACAAAATAATTTGTTAATCAACTAATGATTGGAATTGCTATTATTAGTTGTTAAAACGTGTTTTGAGATAGGAATATTGCTATTGAATTTTCATATCACCTTTTTTTAATTTAATTATTAAGATAGAGAAAGTTGAATGTCAAGGAGGGGAACCGTTGCTGTTATGGTGTGGTATCACCTTAGATATGGTTGTCACGTTGCATTTTTTCTTTGTTTTTATTTATTTATTTATTTATATATGGACCGTCCATGCCAGATTTTTTTTTTTTGTTATGAACTATGCCATGCCAGATGTACCATCAATAAAACATTCCGTGTATGAGTTAGTTTTTGTGTAGCTAGCTACTAGCTGGTTTTGTTTTGTGTTGTGTTGAAGTTTGAGTGCAACATTTTGAAAACTCTTGTTTGAATGTGAATGCAGTTCAATCAAATCTGGGAACGGAAAATATCCTGTGCCAGCTATGGACGTGTCTGGTGTTCGACACGTGGATCAGAGAGTCAACAACGTTGTAACGATTGTTATTGCCTTTGTTTTGACGGCTTTGGTGGTTGAACGGTTGTGGTAA
Protein sequence

>MS.gene010631.t1

MLIITGSYSSTFTIVNNCGYTVWPGILSGAGTEPFSTTGFVLQPGESNALAVPPSWSGRLWGRTHCSQDPTGKFSCITGDCDSSTIECAGRNAIPPATLAEFTLNGSGGLDFFDVSLVDGYNLPILIEPHGETGGGNCTATGCSVDLNAACPTELKVMSSSNSGGGEESVACKSACEAFGDPQYCCSGAYGSPDTCKPSSYSQFFKSACPRAYSYAYDDGTSTFTCASADYTITFCPTPSTSSIKSGNGKYPVPAMDVSGVRHVDQRVNNVVTIVIAFVLTALVVERLW