AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056186

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056186.t1 MTR_8g037890 73.817 317 35 2 1 269 1 317 1.91e-163 456
MS.gene056186.t1 MTR_5g022310 59.744 313 69 4 1 269 1 300 9.84e-120 344
MS.gene056186.t1 MTR_8g056820 67.568 259 42 2 1 219 1 257 8.17e-119 340
MS.gene056186.t1 MTR_5g022310 66.667 252 40 3 1 208 1 252 6.33e-111 320
MS.gene056186.t1 MTR_8g075550 51.250 320 88 8 1 269 1 303 3.38e-95 282
MS.gene056186.t1 MTR_1g025420 48.701 308 103 7 14 267 11 317 4.68e-88 265
MS.gene056186.t1 MTR_1g025420 70.056 177 49 3 35 208 72 247 4.02e-85 255
MS.gene056186.t1 MTR_4g073730 68.750 176 51 2 35 207 74 248 7.49e-85 255
MS.gene056186.t1 MTR_4g073730 55.042 238 99 5 35 268 74 307 8.46e-85 256
MS.gene056186.t1 MTR_3g114030 68.927 177 51 3 35 208 56 231 1.55e-81 245
MS.gene056186.t1 MTR_5g022350 48.729 236 111 4 35 266 77 306 4.47e-68 213
MS.gene056186.t1 MTR_4g073720 45.734 293 100 9 9 257 9 286 1.28e-66 211
MS.gene056186.t1 MTR_2g068030 53.757 173 77 2 35 206 73 243 1.26e-62 197
MS.gene056186.t1 MTR_8g075510 46.914 243 84 6 4 208 10 245 8.13e-62 195
MS.gene056186.t1 MTR_2g067980 56.000 175 74 2 35 208 76 248 2.63e-61 209
MS.gene056186.t1 MTR_8g075510 57.225 173 67 4 35 206 77 243 3.54e-60 193
MS.gene056186.t1 MTR_2g069660 44.156 231 85 4 19 207 15 243 1.74e-59 189
MS.gene056186.t1 MTR_2g068655 48.077 208 104 3 1 207 48 252 2.30e-57 186
MS.gene056186.t1 MTR_8g036215 53.757 173 75 4 35 206 69 237 2.96e-57 183
MS.gene056186.t1 MTR_1g021945 54.237 177 75 4 35 209 75 247 6.53e-57 182
MS.gene056186.t1 MTR_7g102380 52.000 175 79 4 35 207 70 241 6.79e-57 182
MS.gene056186.t1 MTR_6g079580 54.286 175 73 4 35 207 71 240 7.22e-57 182
MS.gene056186.t1 MTR_3g111620 53.409 176 76 5 35 208 76 247 1.99e-56 181
MS.gene056186.t1 MTR_8g107140 52.571 175 76 4 35 207 76 245 4.02e-55 178
MS.gene056186.t1 MTR_1g062660 51.705 176 80 4 35 208 71 243 1.16e-53 174
MS.gene056186.t1 MTR_5g059200 51.744 172 76 4 35 206 75 239 7.49e-53 173
MS.gene056186.t1 MTR_1g062350 50.568 176 82 4 35 208 71 243 2.58e-52 171
MS.gene056186.t1 MTR_1g062590 48.571 175 85 4 35 207 71 242 3.19e-52 171
MS.gene056186.t1 MTR_1g062340 50.000 176 83 4 35 208 71 243 4.02e-52 170
MS.gene056186.t1 MTR_1g062630 51.136 176 81 4 35 208 71 243 6.11e-52 170
MS.gene056186.t1 MTR_1g062370 50.000 176 83 4 35 208 71 243 6.26e-52 170
MS.gene056186.t1 MTR_7g062610 48.571 175 84 4 35 207 72 242 2.59e-49 163
MS.gene056186.t1 MTR_5g023850 38.645 251 75 4 1 207 1 216 1.88e-48 160
MS.gene056186.t1 MTR_3g068015 48.295 176 84 5 35 207 77 248 7.73e-48 159
MS.gene056186.t1 MTR_6g009480 47.191 178 90 4 35 209 78 254 7.02e-45 152
MS.gene056186.t1 MTR_2g067970 45.198 177 92 5 35 208 9 183 1.40e-42 155
MS.gene056186.t1 MTR_4g063630 43.820 178 89 7 35 206 79 251 6.47e-41 142
MS.gene056186.t1 MTR_2g067990 40.625 224 79 8 19 208 20 223 3.28e-40 148
MS.gene056186.t1 MTR_5g010640 45.556 180 80 7 35 207 68 236 9.63e-40 138
MS.gene056186.t1 MTR_1g062690 44.318 176 69 5 35 208 71 219 2.10e-39 137
MS.gene056186.t1 MTR_5g010635 41.477 176 88 6 35 209 66 227 5.55e-37 131
MS.gene056186.t1 MTR_8g089020 50.394 127 58 2 70 196 32 153 7.90e-37 128
MS.gene056186.t1 MTR_8g096900 43.678 174 82 6 35 207 90 248 3.72e-36 129
MS.gene056186.t1 MTR_1g062390 35.393 178 103 5 36 208 69 239 8.35e-27 104
MS.gene056186.t1 MTR_2g063150 35.583 163 97 4 36 196 83 239 1.16e-26 104
MS.gene056186.t1 MTR_7g076360 36.420 162 56 3 35 196 40 154 9.71e-22 89.7
MS.gene056186.t1 MTR_5g022350 55.263 76 33 1 35 110 142 216 1.46e-19 85.1
MS.gene056186.t1 MTR_3g081550 47.959 98 48 2 68 163 13 109 1.50e-19 82.0
MS.gene056186.t1 MTR_8g096910 52.239 67 30 1 35 101 65 129 6.60e-16 73.9
MS.gene056186.t1 MTR_8g096920 46.377 69 35 1 35 103 62 128 1.84e-12 64.3
MS.gene056186.t1 MTR_1g062640 37.778 90 53 3 39 128 60 146 5.13e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056186.t1 AT4G36010 69.444 180 49 3 35 208 72 251 8.96e-87 261
MS.gene056186.t1 AT4G36010 69.444 180 49 3 35 208 72 251 8.96e-87 261
MS.gene056186.t1 AT4G38670 66.667 177 54 4 35 207 72 247 4.60e-80 243
MS.gene056186.t1 AT4G38670 66.667 177 54 4 35 207 72 247 4.60e-80 243
MS.gene056186.t1 AT4G38670 66.667 177 54 4 35 207 56 231 6.52e-80 242
MS.gene056186.t1 AT2G17860 51.012 247 76 4 7 208 4 250 3.22e-79 240
MS.gene056186.t1 AT1G75800 61.340 194 67 4 35 223 72 262 9.81e-79 241
MS.gene056186.t1 AT1G20030 65.363 179 56 3 35 208 52 229 1.21e-78 240
MS.gene056186.t1 AT1G20030 65.363 179 56 3 35 208 69 246 1.96e-78 240
MS.gene056186.t1 AT4G38660 44.981 269 102 4 7 235 11 273 1.11e-68 216
MS.gene056186.t1 AT4G24180 46.275 255 86 6 1 208 2 252 3.36e-68 212
MS.gene056186.t1 AT4G24180 58.889 180 64 4 35 208 82 257 5.37e-68 211
MS.gene056186.t1 AT4G24180 46.275 255 86 6 1 208 2 252 5.63e-68 213
MS.gene056186.t1 AT4G24180 58.889 180 64 4 35 208 82 257 6.96e-68 213
MS.gene056186.t1 AT4G38660 45.703 256 93 4 20 235 2 251 5.69e-67 211
MS.gene056186.t1 AT4G36000 51.852 216 85 5 62 269 1 205 2.07e-65 203
MS.gene056186.t1 AT4G36000 51.852 216 85 5 62 269 1 205 2.07e-65 203
MS.gene056186.t1 AT5G24620 52.525 198 87 3 35 226 74 270 9.14e-62 200
MS.gene056186.t1 AT5G24620 52.525 198 87 3 35 226 129 325 1.03e-61 202
MS.gene056186.t1 AT5G24620 53.333 195 84 3 35 223 150 343 1.54e-61 202
MS.gene056186.t1 AT1G19320 55.056 178 69 4 35 206 74 246 9.69e-61 192
MS.gene056186.t1 AT1G75030 54.802 177 73 6 35 208 72 244 2.21e-60 191
MS.gene056186.t1 AT1G75050 54.545 176 74 4 35 208 73 244 3.85e-60 191
MS.gene056186.t1 AT5G38280 48.936 188 92 2 35 218 74 261 6.76e-60 201
MS.gene056186.t1 AT5G38280 48.936 188 92 2 35 218 74 261 9.21e-60 201
MS.gene056186.t1 AT1G75040 56.647 173 70 3 35 207 72 239 2.90e-59 188
MS.gene056186.t1 AT1G18250 54.286 175 73 4 35 207 71 240 1.35e-58 187
MS.gene056186.t1 AT1G18250 54.286 175 73 4 35 207 70 239 1.44e-58 187
MS.gene056186.t1 AT4G24180 44.351 239 82 6 1 192 2 236 2.31e-58 189
MS.gene056186.t1 AT4G24180 57.317 164 60 4 35 192 82 241 3.39e-58 189
MS.gene056186.t1 AT1G77700 53.107 177 76 4 35 211 107 276 1.15e-57 187
MS.gene056186.t1 AT1G77700 53.107 177 76 4 35 211 135 304 1.84e-57 187
MS.gene056186.t1 AT1G73620 53.714 175 74 4 35 207 91 260 3.61e-57 184
MS.gene056186.t1 AT1G77700 54.023 174 73 4 35 208 107 273 4.06e-57 185
MS.gene056186.t1 AT5G02140 44.681 188 94 3 35 221 70 248 3.85e-46 156
MS.gene056186.t1 AT5G02140 45.977 174 91 2 35 207 70 241 5.40e-46 154
MS.gene056186.t1 AT2G28790 47.159 176 85 6 35 206 102 273 2.96e-45 154
MS.gene056186.t1 AT2G28790 47.159 176 85 6 35 206 77 248 3.27e-45 152
MS.gene056186.t1 AT4G18253 45.714 175 86 3 36 209 74 240 3.86e-45 152
MS.gene056186.t1 AT5G24620 54.676 139 58 1 93 226 15 153 4.94e-44 151
MS.gene056186.t1 AT5G40020 43.716 183 98 4 35 215 77 256 1.17e-43 149
MS.gene056186.t1 AT4G11650 45.000 180 85 6 35 214 65 230 7.55e-43 146
MS.gene056186.t1 AT4G18250 43.069 202 108 4 36 236 105 300 7.59e-43 155
MS.gene056186.t1 AT1G70250 37.657 239 127 9 35 259 192 422 2.23e-41 151
MS.gene056186.t1 AT2G24810 59.740 77 31 0 130 206 116 192 1.54e-28 108

Find 71 sgRNAs with CRISPR-Local

Find 97 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGGTATTGGAAGAGAATT+AGG 0.170473 8.1:-65679633 None:intergenic
CCAAGTGGTCAGGCCGTATA+TGG 0.242476 8.1:+65679803 MS.gene056186:intron
TTAGCCGAGTTTACACTTAA+TGG 0.250700 8.1:+65679937 MS.gene056186:CDS
CGAAAATTCTCCTGTGTTAC+CGG 0.298974 8.1:+65679856 MS.gene056186:CDS
CCAACAAGTTCAATCGATTC+CGG 0.329121 8.1:+65680381 MS.gene056186:CDS
GAGATTTCTCGTTCCGAGAT+TGG 0.331033 8.1:-65680359 None:intergenic
GAACTTGGTTTGCATGTATC+TGG 0.336224 8.1:-65680201 None:intergenic
AAAGCGCATGTGAAGCGTTT+GGG 0.344124 8.1:+65680142 MS.gene056186:CDS
CCGGAATCGATTGAACTTGT+TGG 0.348129 8.1:-65680381 None:intergenic
ATTCTCTTCCAATACCTAAC+TGG 0.364848 8.1:+65679637 MS.gene056186:CDS
CATAGGAACCAGTTAGGTAT+TGG 0.375106 8.1:-65679645 None:intergenic
CTGAGGAGATGGATATATCT+AGG 0.376718 8.1:+65680424 MS.gene056186:CDS
GTTTCCTCCAGCGCATTCTA+TGG 0.376964 8.1:-65679896 None:intergenic
CAAGTGGTCAGGCCGTATAT+GGG 0.389693 8.1:+65679804 MS.gene056186:intron
AGATTTCTCGTTCCGAGATT+GGG 0.392909 8.1:-65680358 None:intergenic
TTTACACTTAATGGTGTAAA+CGG 0.397811 8.1:+65679946 MS.gene056186:CDS
CAATGGAGATTTCTCGTTCC+CGG 0.398071 8.1:-65680400 None:intergenic
AGAGGGTACGGCCCCATATA+CGG 0.401373 8.1:-65679816 None:intergenic
CTCATCACTTTCAACTCGGT+TGG 0.422630 8.1:-65680096 None:intergenic
CTATGTGGTTCGATCATCAT+TGG 0.423194 8.1:-65680012 None:intergenic
AGCAGCAATCATAACATTGT+TGG 0.429720 8.1:-65680466 None:intergenic
ATCGAACCACATAGAGGAAC+TGG 0.430070 8.1:+65680021 MS.gene056186:CDS
CAACAAGTTCAATCGATTCC+GGG 0.449190 8.1:+65680382 MS.gene056186:CDS
ATCTCCATTGCCTGAGGAGA+TGG 0.461012 8.1:+65680413 MS.gene056186:CDS
TAGGTATTGGAAGAGAATTA+GGG 0.467250 8.1:-65679632 None:intergenic
GGCGGAAACTGCATGACAAC+AGG 0.472230 8.1:+65680045 MS.gene056186:CDS
TATAGCTACGCTTATGATGA+TGG 0.472777 8.1:+65680261 MS.gene056186:CDS
AAAAGCGCATGTGAAGCGTT+TGG 0.476727 8.1:+65680141 MS.gene056186:CDS
CCGCCTCCAGTTCCTCTATG+TGG 0.490829 8.1:-65680027 None:intergenic
TTGTTGCATAGGAACCAGTT+AGG 0.493969 8.1:-65679651 None:intergenic
TGAGGAGATGGATATATCTA+GGG 0.502238 8.1:+65680425 MS.gene056186:CDS
AACTCAATCAACCATCGCAT+TGG 0.512231 8.1:+65679606 MS.gene056186:CDS
TATGTGGTTCGATCATCATT+GGG 0.518863 8.1:-65680011 None:intergenic
GTAAACTCGGCTAATGTAGC+TGG 0.521577 8.1:-65679928 None:intergenic
ATATCCATCTCCTCAGGCAA+TGG 0.531593 8.1:-65680417 None:intergenic
TCCTCCACCATAGAATGCGC+TGG 0.534417 8.1:+65679889 MS.gene056186:CDS
CTAGATATATCCATCTCCTC+AGG 0.535492 8.1:-65680423 None:intergenic
TTTCTTTGATGTTAGTCTCG+TGG 0.537833 8.1:+65679975 MS.gene056186:CDS
AAGCGCATGTGAAGCGTTTG+GGG 0.569335 8.1:+65680143 MS.gene056186:CDS
TTTGATGTTAGTCTCGTGGA+CGG 0.569589 8.1:+65679979 MS.gene056186:CDS
AATTGTGAATGTTGTTGCAT+AGG 0.570260 8.1:-65679662 None:intergenic
TCTCAAGTTCGACCCAATCT+CGG 0.572744 8.1:+65680346 MS.gene056186:CDS
AATCTTGAGAGCAGAGGGTA+CGG 0.574479 8.1:-65679828 None:intergenic
TACACCATTAAGTGTAAACT+CGG 0.574983 8.1:-65679941 None:intergenic
CTGCATGACAACAGGTTGCA+TGG 0.576620 8.1:+65680053 MS.gene056186:CDS
AAGTGGTCAGGCCGTATATG+GGG 0.579444 8.1:+65679805 MS.gene056186:intron
GGTGGAGGAAGCACAATCAC+CGG 0.580280 8.1:-65679875 None:intergenic
CCACATAGAGGAACTGGAGG+CGG 0.586718 8.1:+65680027 MS.gene056186:CDS
ATTACTCATCACTTTCAACT+CGG 0.591426 8.1:-65680100 None:intergenic
TCCAGCGCATTCTATGGTGG+AGG 0.594207 8.1:-65679890 None:intergenic
GATCCGCAATATTGTTGTAG+TGG 0.594432 8.1:+65680165 MS.gene056186:CDS
TCCTCCAGCGCATTCTATGG+TGG 0.598874 8.1:-65679893 None:intergenic
AGCACAATCACCGGTAACAC+AGG 0.609119 8.1:-65679866 None:intergenic
GAGTTGAAAGTGATGAGTAA+TGG 0.615914 8.1:+65680102 MS.gene056186:CDS
GGTGAAATCTTGAGAGCAGA+GGG 0.616352 8.1:-65679833 None:intergenic
AATTAGGGTAACCAATGCGA+TGG 0.634339 8.1:-65679617 None:intergenic
ATGATGATCGAACCACATAG+AGG 0.634961 8.1:+65680015 MS.gene056186:CDS
GGGTGAAATCTTGAGAGCAG+AGG 0.636246 8.1:-65679834 None:intergenic
CGAGAAATCTCCATTGCCTG+AGG 0.654237 8.1:+65680407 MS.gene056186:CDS
TCCACCATAGAATGCGCTGG+AGG 0.662652 8.1:+65679892 MS.gene056186:CDS
GAACTTGAGATCAAACCTGA+GGG 0.674753 8.1:-65680333 None:intergenic
TTGAAAGTGATGAGTAATGG+CGG 0.675133 8.1:+65680105 MS.gene056186:CDS
GAGGAGATGGATATATCTAG+GGG 0.677137 8.1:+65680426 MS.gene056186:CDS
GTGCCACTACAACAATATTG+CGG 0.688185 8.1:-65680168 None:intergenic
CGAACTTGAGATCAAACCTG+AGG 0.689462 8.1:-65680334 None:intergenic
TAAGCGTAGCTATAAGCGCG+AGG 0.692743 8.1:-65680252 None:intergenic
AAAGTGATGAGTAATGGCGG+AGG 0.693219 8.1:+65680108 MS.gene056186:CDS
TTGCATGGTGGATTTGAACG+CGG 0.693310 8.1:+65680068 MS.gene056186:CDS
AACTCGGCTAATGTAGCTGG+TGG 0.697214 8.1:-65679925 None:intergenic
GAACCACATAGAGGAACTGG+AGG 0.699990 8.1:+65680024 MS.gene056186:CDS
CATGACAACAGGTTGCATGG+TGG 0.757398 8.1:+65680056 MS.gene056186:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TTTACACTTAATGGTGTAAA+CGG + chr8.1:65679946-65679965 MS.gene056186:CDS 25.0%
!!! TTGTTTTGATTGTGTTTTTG+TGG + chr8.1:65680499-65680518 MS.gene056186:CDS 25.0%
AAAAATTGCGAGTATGAACT+TGG - chr8.1:65680219-65680238 None:intergenic 30.0%
AATTGTGAATGTTGTTGCAT+AGG - chr8.1:65679665-65679684 None:intergenic 30.0%
ACAAGTGTAACTACACAATT+TGG + chr8.1:65679689-65679708 MS.gene056186:intron 30.0%
ATTACTCATCACTTTCAACT+CGG - chr8.1:65680103-65680122 None:intergenic 30.0%
TACACCATTAAGTGTAAACT+CGG - chr8.1:65679944-65679963 None:intergenic 30.0%
!! TAGGTATTGGAAGAGAATTA+GGG - chr8.1:65679635-65679654 None:intergenic 30.0%
!! TTAGGTATTGGAAGAGAATT+AGG - chr8.1:65679636-65679655 None:intergenic 30.0%
AGCAGCAATCATAACATTGT+TGG - chr8.1:65680469-65680488 None:intergenic 35.0%
ATTCTCTTCCAATACCTAAC+TGG + chr8.1:65679637-65679656 MS.gene056186:CDS 35.0%
GAGTTGAAAGTGATGAGTAA+TGG + chr8.1:65680102-65680121 MS.gene056186:CDS 35.0%
TATAGCTACGCTTATGATGA+TGG + chr8.1:65680261-65680280 MS.gene056186:CDS 35.0%
TATGTGGTTCGATCATCATT+GGG - chr8.1:65680014-65680033 None:intergenic 35.0%
TGAGGAGATGGATATATCTA+GGG + chr8.1:65680425-65680444 MS.gene056186:CDS 35.0%
TTAGCCGAGTTTACACTTAA+TGG + chr8.1:65679937-65679956 MS.gene056186:CDS 35.0%
TTGAAAGTGATGAGTAATGG+CGG + chr8.1:65680105-65680124 MS.gene056186:CDS 35.0%
! ATTTGGCCTGGAATTTTATC+CGG + chr8.1:65679706-65679725 MS.gene056186:intron 35.0%
! TTTCTTTGATGTTAGTCTCG+TGG + chr8.1:65679975-65679994 MS.gene056186:CDS 35.0%
AACTCAATCAACCATCGCAT+TGG + chr8.1:65679606-65679625 MS.gene056186:CDS 40.0%
AATTAGGGTAACCAATGCGA+TGG - chr8.1:65679620-65679639 None:intergenic 40.0%
AGATTTCTCGTTCCGAGATT+GGG - chr8.1:65680361-65680380 None:intergenic 40.0%
ATGATGATCGAACCACATAG+AGG + chr8.1:65680015-65680034 MS.gene056186:CDS 40.0%
CATAGGAACCAGTTAGGTAT+TGG - chr8.1:65679648-65679667 None:intergenic 40.0%
CGAAAATTCTCCTGTGTTAC+CGG + chr8.1:65679856-65679875 MS.gene056186:CDS 40.0%
CTAGATATATCCATCTCCTC+AGG - chr8.1:65680426-65680445 None:intergenic 40.0%
CTATGTGGTTCGATCATCAT+TGG - chr8.1:65680015-65680034 None:intergenic 40.0%
CTGAGGAGATGGATATATCT+AGG + chr8.1:65680424-65680443 MS.gene056186:CDS 40.0%
GAACTTGAGATCAAACCTGA+GGG - chr8.1:65680336-65680355 None:intergenic 40.0%
GAGGAGATGGATATATCTAG+GGG + chr8.1:65680426-65680445 MS.gene056186:CDS 40.0%
GATCCGCAATATTGTTGTAG+TGG + chr8.1:65680165-65680184 MS.gene056186:CDS 40.0%
TGTAACTACACAATTTGGCC+TGG + chr8.1:65679694-65679713 MS.gene056186:intron 40.0%
TTGTTGCATAGGAACCAGTT+AGG - chr8.1:65679654-65679673 None:intergenic 40.0%
! ATCATCTCTTTTTGTCCCTC+AGG + chr8.1:65680318-65680337 MS.gene056186:CDS 40.0%
! CAACAAGTTCAATCGATTCC+GGG + chr8.1:65680382-65680401 MS.gene056186:CDS 40.0%
! CCAACAAGTTCAATCGATTC+CGG + chr8.1:65680381-65680400 MS.gene056186:CDS 40.0%
! CGGTAACACAGGAGAATTTT+CGG - chr8.1:65679858-65679877 None:intergenic 40.0%
! GGTAACACAGGAGAATTTTC+GGG - chr8.1:65679857-65679876 None:intergenic 40.0%
! GTGCCACTACAACAATATTG+CGG - chr8.1:65680171-65680190 None:intergenic 40.0%
! TTTGATGTTAGTCTCGTGGA+CGG + chr8.1:65679979-65679998 MS.gene056186:CDS 40.0%
!! GAACTTGGTTTGCATGTATC+TGG - chr8.1:65680204-65680223 None:intergenic 40.0%
AAAGTGATGAGTAATGGCGG+AGG + chr8.1:65680108-65680127 MS.gene056186:CDS 45.0%
AATCTTGAGAGCAGAGGGTA+CGG - chr8.1:65679831-65679850 None:intergenic 45.0%
ACAACACCGTTCTCTACAAC+CGG + chr8.1:65679736-65679755 MS.gene056186:intron 45.0%
ATATCCATCTCCTCAGGCAA+TGG - chr8.1:65680420-65680439 None:intergenic 45.0%
ATCGAACCACATAGAGGAAC+TGG + chr8.1:65680021-65680040 MS.gene056186:CDS 45.0%
CAATGGAGATTTCTCGTTCC+CGG - chr8.1:65680403-65680422 None:intergenic 45.0%
CCGGAATCGATTGAACTTGT+TGG - chr8.1:65680384-65680403 None:intergenic 45.0%
CGAACTTGAGATCAAACCTG+AGG - chr8.1:65680337-65680356 None:intergenic 45.0%
CTCATCACTTTCAACTCGGT+TGG - chr8.1:65680099-65680118 None:intergenic 45.0%
GAGATTTCTCGTTCCGAGAT+TGG - chr8.1:65680362-65680381 None:intergenic 45.0%
GGTGAAATCTTGAGAGCAGA+GGG - chr8.1:65679836-65679855 None:intergenic 45.0%
GTAAACTCGGCTAATGTAGC+TGG - chr8.1:65679931-65679950 None:intergenic 45.0%
TCTCAAGTTCGACCCAATCT+CGG + chr8.1:65680346-65680365 MS.gene056186:CDS 45.0%
! AAAAGCGCATGTGAAGCGTT+TGG + chr8.1:65680141-65680160 MS.gene056186:CDS 45.0%
! AAAGCGCATGTGAAGCGTTT+GGG + chr8.1:65680142-65680161 MS.gene056186:CDS 45.0%
!! TGTAGAGAACGGTGTTGTTC+CGG - chr8.1:65679734-65679753 None:intergenic 45.0%
!! TTGCATGGTGGATTTGAACG+CGG + chr8.1:65680068-65680087 MS.gene056186:CDS 45.0%
AACTCGGCTAATGTAGCTGG+TGG - chr8.1:65679928-65679947 None:intergenic 50.0%
AAGTGGTCAGGCCGTATATG+GGG + chr8.1:65679805-65679824 MS.gene056186:intron 50.0%
ACGTGGTTAGAGAGCAAAGC+CGG - chr8.1:65679758-65679777 None:intergenic 50.0%
AGCACAATCACCGGTAACAC+AGG - chr8.1:65679869-65679888 None:intergenic 50.0%
ATATACGGCCTGACCACTTG+GGG - chr8.1:65679804-65679823 None:intergenic 50.0%
ATCTCCATTGCCTGAGGAGA+TGG + chr8.1:65680413-65680432 MS.gene056186:CDS 50.0%
CAAGTGGTCAGGCCGTATAT+GGG + chr8.1:65679804-65679823 MS.gene056186:intron 50.0%
CATATACGGCCTGACCACTT+GGG - chr8.1:65679805-65679824 None:intergenic 50.0%
CATGACAACAGGTTGCATGG+TGG + chr8.1:65680056-65680075 MS.gene056186:CDS 50.0%
CGAGAAATCTCCATTGCCTG+AGG + chr8.1:65680407-65680426 MS.gene056186:CDS 50.0%
CTGCATGACAACAGGTTGCA+TGG + chr8.1:65680053-65680072 MS.gene056186:CDS 50.0%
GAACCACATAGAGGAACTGG+AGG + chr8.1:65680024-65680043 MS.gene056186:CDS 50.0%
GCAAAGCCGGTTGTAGAGAA+CGG - chr8.1:65679745-65679764 None:intergenic 50.0%
GGGTGAAATCTTGAGAGCAG+AGG - chr8.1:65679837-65679856 None:intergenic 50.0%
GTTTCCTCCAGCGCATTCTA+TGG - chr8.1:65679899-65679918 None:intergenic 50.0%
TAAGCGTAGCTATAAGCGCG+AGG - chr8.1:65680255-65680274 None:intergenic 50.0%
! AAGCGCATGTGAAGCGTTTG+GGG + chr8.1:65680143-65680162 MS.gene056186:CDS 50.0%
!! ACAAGGGCATTGGATTCACG+TGG - chr8.1:65679775-65679794 None:intergenic 50.0%
CCAAGTGGTCAGGCCGTATA+TGG + chr8.1:65679803-65679822 MS.gene056186:intron 55.0%
CCACATAGAGGAACTGGAGG+CGG + chr8.1:65680027-65680046 MS.gene056186:CDS 55.0%
CCATATACGGCCTGACCACT+TGG - chr8.1:65679806-65679825 None:intergenic 55.0%
GGCGGAAACTGCATGACAAC+AGG + chr8.1:65680045-65680064 MS.gene056186:CDS 55.0%
TATACGGCCTGACCACTTGG+GGG - chr8.1:65679803-65679822 None:intergenic 55.0%
TCCACCATAGAATGCGCTGG+AGG + chr8.1:65679892-65679911 MS.gene056186:CDS 55.0%
TCCAGCGCATTCTATGGTGG+AGG - chr8.1:65679893-65679912 None:intergenic 55.0%
TCCTCCACCATAGAATGCGC+TGG + chr8.1:65679889-65679908 MS.gene056186:CDS 55.0%
TCCTCCAGCGCATTCTATGG+TGG - chr8.1:65679896-65679915 None:intergenic 55.0%
! ACCACTTGGGGGGTACAACA+AGG - chr8.1:65679792-65679811 None:intergenic 55.0%
! AGAGGGTACGGCCCCATATA+CGG - chr8.1:65679819-65679838 None:intergenic 55.0%
! CCACTTGGGGGGTACAACAA+GGG - chr8.1:65679791-65679810 None:intergenic 55.0%
! CCTGGAATTTTATCCGGCGC+CGG + chr8.1:65679712-65679731 MS.gene056186:intron 55.0%
! GGTGGAGGAAGCACAATCAC+CGG - chr8.1:65679878-65679897 None:intergenic 55.0%
ATACGGCCTGACCACTTGGG+GGG - chr8.1:65679802-65679821 None:intergenic 60.0%
CCGCCTCCAGTTCCTCTATG+TGG - chr8.1:65680030-65680049 None:intergenic 60.0%
GTTGTACCCCCCAAGTGGTC+AGG + chr8.1:65679793-65679812 MS.gene056186:intron 60.0%
! CCCTTGTTGTACCCCCCAAG+TGG + chr8.1:65679788-65679807 MS.gene056186:intron 60.0%
! CCGGCGCCGGATAAAATTCC+AGG - chr8.1:65679715-65679734 None:intergenic 60.0%
! GGGGGGTACAACAAGGGCAT+TGG - chr8.1:65679785-65679804 None:intergenic 60.0%
!! GAACGGTGTTGTTCCGGCGC+CGG - chr8.1:65679728-65679747 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 65679595 65680524 65679595 ID=MS.gene056186
chr8.1 mRNA 65679595 65680524 65679595 ID=MS.gene056186.t1;Parent=MS.gene056186
chr8.1 exon 65679595 65679694 65679595 ID=MS.gene056186.t1.exon1;Parent=MS.gene056186.t1
chr8.1 CDS 65679595 65679694 65679595 ID=cds.MS.gene056186.t1;Parent=MS.gene056186.t1
chr8.1 exon 65679815 65680524 65679815 ID=MS.gene056186.t1.exon2;Parent=MS.gene056186.t1
chr8.1 CDS 65679815 65680524 65679815 ID=cds.MS.gene056186.t1;Parent=MS.gene056186.t1
Gene Sequence

>MS.gene056186

ATGGTTGCTTCAACTCAATCAACCATCGCATTGGTTACCCTAATTCTCTTCCAATACCTAACTGGTTCCTATGCAACAACATTCACAATTGTTAACAAGTGTAACTACACAATTTGGCCTGGAATTTTATCCGGCGCCGGAACAACACCGTTCTCTACAACCGGCTTTGCTCTCTAACCACGTGAATCCAATGCCCTTGTTGTACCCCCCAAGTGGTCAGGCCGTATATGGGGCCGTACCCTCTGCTCTCAAGATTTCACCCGAAAATTCTCCTGTGTTACCGGTGATTGTGCTTCCTCCACCATAGAATGCGCTGGAGGAAACACTCAACCACCAGCTACATTAGCCGAGTTTACACTTAATGGTGTAAACGGACTTGATTTCTTTGATGTTAGTCTCGTGGACGGTTACAAACTCCCAATGATGATCGAACCACATAGAGGAACTGGAGGCGGAAACTGCATGACAACAGGTTGCATGGTGGATTTGAACGCGGCGTGTCCAACCGAGTTGAAAGTGATGAGTAATGGCGGAGGTGTAGCGTGTAAAAGCGCATGTGAAGCGTTTGGGGATCCGCAATATTGTTGTAGTGGCACTTACGCTTCTCCAGATACATGCAAACCAAGTTCATACTCGCAATTTTTCAAGAGTGCTTGTCCTCGCGCTTATAGCTACGCTTATGATGATGGAACAAGCACTTTTACTTGTGATTCTACTGATTATATCATCTCTTTTTGTCCCTCAGGTTTGATCTCAAGTTCGACCCAATCTCGGAACGAGAAATCTCCAACAAGTTCAATCGATTCCGGGAACGAGAAATCTCCATTGCCTGAGGAGATGGATATATCTAGGGGACATGTGAACTTCACAGCCAACAATGTTATGATTGCTGCTATTATTTCTTTTGTTTTGATTGTGTTTTTGTGGTGA
Protein sequence

>MS.gene056186.t1

MVASTQSTIALVTLILFQYLTGSYATTFTIVNKCRIWGRTLCSQDFTRKFSCVTGDCASSTIECAGGNTQPPATLAEFTLNGVNGLDFFDVSLVDGYKLPMMIEPHRGTGGGNCMTTGCMVDLNAACPTELKVMSNGGGVACKSACEAFGDPQYCCSGTYASPDTCKPSSYSQFFKSACPRAYSYAYDDGTSTFTCDSTDYIISFCPSGLISSSTQSRNEKSPTSSIDSGNEKSPLPEEMDISRGHVNFTANNVMIAAIISFVLIVFLW