AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016652

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016652.t1 MTR_8g037890 87.382 317 16 1 1 293 1 317 0.0 548
MS.gene016652.t1 MTR_8g056820 88.800 250 28 0 1 250 1 250 4.81e-163 454
MS.gene016652.t1 MTR_5g022310 79.110 292 52 5 1 284 1 291 1.74e-161 452
MS.gene016652.t1 MTR_5g022310 83.984 256 37 2 1 252 1 256 8.89e-154 431
MS.gene016652.t1 MTR_8g075550 64.725 309 91 6 1 295 1 305 2.44e-132 379
MS.gene016652.t1 MTR_1g025420 62.868 272 94 5 14 280 11 280 8.48e-117 340
MS.gene016652.t1 MTR_1g025420 68.313 243 71 4 14 251 11 252 5.56e-115 333
MS.gene016652.t1 MTR_3g114030 69.231 234 68 3 20 250 1 233 5.18e-113 327
MS.gene016652.t1 MTR_4g073730 64.490 245 78 3 11 247 5 248 5.01e-111 324
MS.gene016652.t1 MTR_4g073730 64.490 245 78 3 11 247 5 248 7.17e-111 325
MS.gene016652.t1 MTR_4g073720 60.000 240 85 5 9 246 9 239 1.75e-92 279
MS.gene016652.t1 MTR_5g022350 54.244 271 110 7 6 272 12 272 1.01e-88 268
MS.gene016652.t1 MTR_8g075510 55.200 250 101 6 4 252 10 249 2.71e-85 257
MS.gene016652.t1 MTR_8g075510 56.540 237 92 6 11 246 17 243 3.97e-83 253
MS.gene016652.t1 MTR_2g068030 53.394 221 99 3 28 246 25 243 1.96e-82 250
MS.gene016652.t1 MTR_7g102380 50.612 245 115 5 7 249 3 243 8.33e-82 248
MS.gene016652.t1 MTR_2g067980 54.978 231 98 3 24 250 22 250 1.08e-81 267
MS.gene016652.t1 MTR_2g069660 53.112 241 105 4 9 247 9 243 7.17e-81 246
MS.gene016652.t1 MTR_8g036215 51.046 239 112 4 9 246 3 237 3.87e-80 243
MS.gene016652.t1 MTR_1g021945 54.825 228 97 4 25 250 25 248 4.37e-78 239
MS.gene016652.t1 MTR_2g068655 50.215 233 114 2 22 253 27 258 4.75e-78 241
MS.gene016652.t1 MTR_3g111620 53.947 228 99 5 25 250 26 249 1.32e-77 238
MS.gene016652.t1 MTR_1g062660 51.464 239 109 5 13 249 11 244 1.56e-76 234
MS.gene016652.t1 MTR_1g062590 48.988 247 118 5 3 247 2 242 1.80e-76 234
MS.gene016652.t1 MTR_6g079580 51.452 241 108 5 11 247 5 240 3.20e-76 233
MS.gene016652.t1 MTR_1g062340 51.502 233 106 5 19 249 17 244 4.20e-76 233
MS.gene016652.t1 MTR_8g107140 50.000 250 117 5 1 247 1 245 6.05e-75 231
MS.gene016652.t1 MTR_1g062350 50.000 248 116 6 4 249 3 244 1.37e-74 229
MS.gene016652.t1 MTR_1g062370 49.194 248 118 6 4 249 3 244 2.26e-74 229
MS.gene016652.t1 MTR_1g062630 49.004 251 120 6 3 251 2 246 1.03e-71 223
MS.gene016652.t1 MTR_5g023850 48.031 254 93 4 1 250 1 219 1.39e-71 221
MS.gene016652.t1 MTR_5g059200 46.484 256 122 7 1 252 1 245 1.82e-70 220
MS.gene016652.t1 MTR_7g062610 45.492 244 129 3 5 247 2 242 6.72e-69 215
MS.gene016652.t1 MTR_3g068015 48.000 225 112 4 25 247 27 248 4.13e-68 213
MS.gene016652.t1 MTR_1g062690 45.161 248 104 7 4 249 3 220 3.41e-61 194
MS.gene016652.t1 MTR_6g009480 41.200 250 143 4 1 247 4 252 2.44e-60 194
MS.gene016652.t1 MTR_2g067990 47.414 232 94 8 19 249 20 224 4.11e-60 207
MS.gene016652.t1 MTR_4g063630 43.154 241 125 8 13 246 16 251 9.04e-59 189
MS.gene016652.t1 MTR_5g010640 40.784 255 124 9 1 247 1 236 6.53e-50 166
MS.gene016652.t1 MTR_2g067970 48.108 185 91 5 69 250 3 185 7.17e-49 175
MS.gene016652.t1 MTR_5g010635 40.088 227 112 8 23 247 21 225 1.74e-44 152
MS.gene016652.t1 MTR_8g096900 40.586 239 116 9 11 247 34 248 2.32e-44 152
MS.gene016652.t1 MTR_5g022350 53.237 139 59 3 14 150 82 216 1.89e-39 139
MS.gene016652.t1 MTR_2g063150 35.377 212 128 5 27 236 35 239 4.88e-39 138
MS.gene016652.t1 MTR_8g089020 50.769 130 59 2 110 239 32 156 1.23e-37 132
MS.gene016652.t1 MTR_1g062390 32.016 253 151 8 1 247 1 238 1.25e-32 121
MS.gene016652.t1 MTR_7g076360 35.849 212 72 4 25 236 7 154 1.78e-31 116
MS.gene016652.t1 MTR_8g096910 44.604 139 61 6 9 141 1 129 7.95e-29 109
MS.gene016652.t1 MTR_8g096920 41.304 138 70 5 9 144 1 129 1.21e-23 95.9
MS.gene016652.t1 MTR_3g081550 48.421 95 46 2 111 203 16 109 1.03e-18 80.9
MS.gene016652.t1 MTR_1g062640 38.889 90 52 2 79 168 60 146 1.31e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016652.t1 AT4G36010 70.386 233 63 3 22 248 19 251 1.56e-117 341
MS.gene016652.t1 AT4G36010 70.386 233 63 3 22 248 19 251 1.56e-117 341
MS.gene016652.t1 AT2G17860 63.855 249 85 3 7 250 4 252 3.33e-111 323
MS.gene016652.t1 AT1G75800 60.618 259 93 5 9 259 5 262 4.83e-108 318
MS.gene016652.t1 AT1G20030 53.974 302 110 6 22 295 16 316 2.71e-106 313
MS.gene016652.t1 AT1G20030 54.181 299 108 6 25 295 2 299 4.83e-106 311
MS.gene016652.t1 AT4G38670 60.938 256 92 5 9 257 6 260 1.18e-105 310
MS.gene016652.t1 AT4G38670 60.938 256 92 5 9 257 6 260 1.18e-105 310
MS.gene016652.t1 AT4G38670 64.706 238 76 5 27 257 8 244 5.68e-105 308
MS.gene016652.t1 AT4G38660 59.055 254 98 3 6 259 10 257 7.67e-99 295
MS.gene016652.t1 AT4G24180 58.943 246 89 5 11 248 16 257 3.47e-97 288
MS.gene016652.t1 AT4G24180 58.800 250 92 5 6 248 7 252 3.53e-97 288
MS.gene016652.t1 AT4G38660 60.833 240 88 3 20 259 2 235 8.07e-97 289
MS.gene016652.t1 AT4G24180 58.800 250 92 5 6 248 7 252 9.22e-97 288
MS.gene016652.t1 AT4G24180 58.943 246 89 5 11 248 16 257 1.07e-96 288
MS.gene016652.t1 AT4G24180 56.838 234 90 5 6 232 7 236 2.60e-86 262
MS.gene016652.t1 AT4G24180 56.957 230 87 5 11 232 16 241 3.11e-86 262
MS.gene016652.t1 AT5G38280 45.172 290 146 5 8 291 6 288 1.98e-84 268
MS.gene016652.t1 AT5G38280 45.172 290 146 5 8 291 6 288 3.10e-84 267
MS.gene016652.t1 AT5G24620 54.217 249 101 4 23 265 77 318 5.14e-84 261
MS.gene016652.t1 AT5G24620 51.894 264 113 5 9 265 7 263 5.56e-84 259
MS.gene016652.t1 AT5G24620 54.217 249 101 4 23 265 98 339 6.04e-84 262
MS.gene016652.t1 AT1G75030 53.386 251 106 8 6 250 1 246 3.41e-83 251
MS.gene016652.t1 AT1G19320 51.793 251 111 5 1 246 1 246 6.03e-82 248
MS.gene016652.t1 AT1G75050 53.441 247 107 6 7 250 5 246 2.67e-81 247
MS.gene016652.t1 AT1G75040 54.357 241 104 4 7 247 5 239 4.50e-81 246
MS.gene016652.t1 AT1G77700 41.914 303 153 8 12 310 43 326 6.15e-78 241
MS.gene016652.t1 AT1G18250 52.863 227 100 4 23 247 19 240 7.47e-78 238
MS.gene016652.t1 AT1G18250 52.889 225 99 4 25 247 20 239 1.05e-77 238
MS.gene016652.t1 AT1G77700 43.357 286 143 7 25 310 88 354 3.23e-77 240
MS.gene016652.t1 AT1G73620 53.333 225 98 4 25 247 41 260 3.24e-77 237
MS.gene016652.t1 AT1G77700 49.791 239 106 6 12 246 43 271 1.37e-75 234
MS.gene016652.t1 AT5G02140 40.283 283 159 5 4 285 2 275 1.23e-67 213
MS.gene016652.t1 AT4G36000 66.667 159 44 3 102 259 1 151 1.24e-67 211
MS.gene016652.t1 AT4G36000 66.667 159 44 3 102 259 1 151 1.24e-67 211
MS.gene016652.t1 AT5G02140 43.673 245 132 3 4 247 2 241 5.00e-66 207
MS.gene016652.t1 AT4G18253 44.082 245 126 4 9 250 5 241 2.77e-64 203
MS.gene016652.t1 AT2G28790 44.628 242 125 7 10 246 11 248 1.22e-60 194
MS.gene016652.t1 AT2G28790 44.628 242 125 7 10 246 36 273 1.24e-60 195
MS.gene016652.t1 AT4G18250 44.534 247 128 5 5 249 35 274 1.51e-60 205
MS.gene016652.t1 AT1G70250 43.388 242 118 8 25 255 144 377 2.90e-58 200
MS.gene016652.t1 AT5G40020 41.921 229 128 4 23 249 25 250 3.10e-58 188
MS.gene016652.t1 AT4G11650 40.458 262 131 9 1 261 1 238 7.42e-53 174
MS.gene016652.t1 AT5G24620 62.500 120 40 1 133 247 15 134 7.79e-44 152
MS.gene016652.t1 AT2G24810 61.039 77 30 0 170 246 116 192 3.01e-28 108

Find 92 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGGTATTGGAAGAGAATT+AGG 0.170473 8.2:-61849939 None:intergenic
CCAAGTGGTCAGGCCGTCTA+TGG 0.207746 8.2:+61850109 MS.gene016652:CDS
TCTGAGGAGATGGATATATC+TGG 0.261477 8.2:+61850681 MS.gene016652:CDS
GGAAAATTCTCCTGTGTTAC+AGG 0.263263 8.2:+61850162 MS.gene016652:CDS
TGTTGTTCTTGTGGTGAATT+TGG 0.294332 8.2:+61850809 MS.gene016652:CDS
GAACTTGGCTTGCATGTATC+TGG 0.329096 8.2:-61850507 None:intergenic
AAAGCGCATGTGAAGCGTTT+GGG 0.344124 8.2:+61850448 MS.gene016652:CDS
CCATGTGGTTCGATCGTCAT+TGG 0.344279 8.2:-61850318 None:intergenic
CCCACAAGTTCGATCCAATC+TGG 0.346023 8.2:+61850639 MS.gene016652:CDS
ATTCTCTTCCAATACCTAAC+TGG 0.364848 8.2:+61849943 MS.gene016652:CDS
AACTCAATCAACCATCGCTT+TGG 0.382050 8.2:+61849912 MS.gene016652:CDS
CATACGAACCAGTTAGGTAT+TGG 0.382138 8.2:-61849951 None:intergenic
TGTAGAGAACGGTGTTGTTC+CGG 0.383816 8.2:-61850037 None:intergenic
CCGGCGCCGGATAAAATTCC+AGG 0.384166 8.2:-61850018 None:intergenic
GAGATTTCTCGTTCCCAGAT+TGG 0.394550 8.2:-61850653 None:intergenic
AACAACAATCATAACATTGT+TGG 0.405286 8.2:-61850724 None:intergenic
CAAGTGGTCAGGCCGTCTAT+GGG 0.409833 8.2:+61850110 MS.gene016652:CDS
TTAGCCGAGTTTACACTTAA+CGG 0.420790 8.2:+61850243 MS.gene016652:CDS
CTCATCACTTTCAACTCGGT+TGG 0.422630 8.2:-61850402 None:intergenic
ACAAGTGCAACTACACAGTT+TGG 0.422870 8.2:+61849995 MS.gene016652:CDS
CCATAGACGGCCTGACCACT+TGG 0.423008 8.2:-61850109 None:intergenic
GGGAGGTACGGCAAGGGCAT+TGG 0.430183 8.2:-61850088 None:intergenic
GCCGTACCTCCCAAGTGGTC+AGG 0.435086 8.2:+61850099 MS.gene016652:CDS
ATCGAACCACATGGAGCAAC+CGG 0.442103 8.2:+61850327 MS.gene016652:CDS
TGTCATGCAGTTTCCGCCTC+CGG 0.443562 8.2:-61850346 None:intergenic
GGCAAGGGCATTGGATTCGC+CGG 0.444861 8.2:-61850079 None:intergenic
GCCGGGTTGGAGAGCAAAGC+CGG 0.453151 8.2:-61850061 None:intergenic
TTGTTGCATACGAACCAGTT+AGG 0.453452 8.2:-61849957 None:intergenic
ACAACACCGTTCTCTACAAC+CGG 0.459009 8.2:+61850042 MS.gene016652:CDS
GTTTCCTCCAGCACACTCTA+TGG 0.465520 8.2:-61850202 None:intergenic
CCACATGGAGCAACCGGAGG+CGG 0.465833 8.2:+61850333 MS.gene016652:CDS
TAGGTATTGGAAGAGAATTA+GGG 0.467250 8.2:-61849938 None:intergenic
GGCGGAAACTGCATGACAAC+AGG 0.472230 8.2:+61850351 MS.gene016652:CDS
TATAGCTACGCTTATGATGA+TGG 0.472777 8.2:+61850567 MS.gene016652:CDS
GCCTGACCACTTGGGAGGTA+CGG 0.475859 8.2:-61850100 None:intergenic
AAAAGCGCATGTGAAGCGTT+TGG 0.476727 8.2:+61850447 MS.gene016652:CDS
TCCTCCACCATAGAGTGTGC+TGG 0.480343 8.2:+61850195 MS.gene016652:CDS
CATGTGGTTCGATCGTCATT+GGG 0.481504 8.2:-61850317 None:intergenic
ATATCCATCTCCTCAGACAT+TGG 0.484864 8.2:-61850675 None:intergenic
AGCACAGTCACCTGTAACAC+AGG 0.485053 8.2:-61850172 None:intergenic
ATCTCCAATGTCTGAGGAGA+TGG 0.486815 8.2:+61850671 MS.gene016652:CDS
CCAGATTGGATCGAACTTGT+GGG 0.490228 8.2:-61850639 None:intergenic
CTGAGGAGATGGATATATCT+GGG 0.492913 8.2:+61850682 MS.gene016652:CDS
TTTACACTTAACGGTGCAAA+CGG 0.497247 8.2:+61850252 MS.gene016652:CDS
GTTCTTGTGGTGAATTTGGT+AGG 0.497434 8.2:+61850813 MS.gene016652:CDS
CCCAGATTGGATCGAACTTG+TGG 0.498644 8.2:-61850640 None:intergenic
GAACGGTGTTGTTCCGGCGC+CGG 0.511342 8.2:-61850031 None:intergenic
TGCAACTACACAGTTTGGCC+TGG 0.523345 8.2:+61850000 MS.gene016652:CDS
GCAAGGGCATTGGATTCGCC+GGG 0.523677 8.2:-61850078 None:intergenic
GGGCATTGGATTCGCCGGGT+TGG 0.537166 8.2:-61850074 None:intergenic
CCACAAGTTCGATCCAATCT+GGG 0.541949 8.2:+61850640 MS.gene016652:CDS
TTTCTTCGACGTTAGTCTCG+TGG 0.547119 8.2:+61850281 MS.gene016652:CDS
AGAGGGTACGGCCCCATAGA+CGG 0.558662 8.2:-61850122 None:intergenic
CCGCCTCCGGTTGCTCCATG+TGG 0.564023 8.2:-61850333 None:intergenic
ACCACTTGGGAGGTACGGCA+AGG 0.566696 8.2:-61850095 None:intergenic
TCCAGCACACTCTATGGTGG+AGG 0.567323 8.2:-61850196 None:intergenic
CTCTGCTCTCAAGATTCCAC+CGG 0.569324 8.2:+61850141 MS.gene016652:CDS
AAGCGCATGTGAAGCGTTTG+GGG 0.569335 8.2:+61850449 MS.gene016652:CDS
GTAAACTCGGCTAATGTAGC+CGG 0.573023 8.2:-61850234 None:intergenic
AATCTTGAGAGCAGAGGGTA+CGG 0.574479 8.2:-61850134 None:intergenic
CTGCATGACAACAGGTTGCA+TGG 0.576620 8.2:+61850359 MS.gene016652:CDS
GATCCACAATACTGTTGTAG+TGG 0.579781 8.2:+61850471 MS.gene016652:CDS
TGCACCGTTAAGTGTAAACT+CGG 0.588205 8.2:-61850247 None:intergenic
CATAGACGGCCTGACCACTT+GGG 0.589711 8.2:-61850108 None:intergenic
ATTACTCATCACTTTCAACT+CGG 0.591426 8.2:-61850406 None:intergenic
CGGTGGAATCTTGAGAGCAG+AGG 0.605968 8.2:-61850140 None:intergenic
CGAGAAATCTCCAATGTCTG+AGG 0.606622 8.2:+61850665 MS.gene016652:CDS
GCAAAGCCGGTTGTAGAGAA+CGG 0.610915 8.2:-61850048 None:intergenic
TCCTCCAGCACACTCTATGG+TGG 0.611738 8.2:-61850199 None:intergenic
ACCGGCTTTGCTCTCCAACC+CGG 0.615393 8.2:+61850060 MS.gene016652:CDS
GAGTTGAAAGTGATGAGTAA+TGG 0.615914 8.2:+61850408 MS.gene016652:CDS
TGGAGGAAACGCTCAACCAC+CGG 0.617523 8.2:+61850215 MS.gene016652:CDS
GTGGTTCGATCGTCATTGGG+AGG 0.619192 8.2:-61850314 None:intergenic
TTCGACGTTAGTCTCGTGGA+CGG 0.621410 8.2:+61850285 MS.gene016652:CDS
GGTGGAATCTTGAGAGCAGA+GGG 0.624367 8.2:-61850139 None:intergenic
GCACTTGTTAACAATTGTGA+AGG 0.626192 8.2:-61849980 None:intergenic
GCGCCACTACAACAGTATTG+TGG 0.632976 8.2:-61850474 None:intergenic
AATTAGGGTAACCAAAGCGA+TGG 0.636779 8.2:-61849923 None:intergenic
AAGTGGTCAGGCCGTCTATG+GGG 0.639176 8.2:+61850111 MS.gene016652:CDS
AACTCGGCTAATGTAGCCGG+TGG 0.641121 8.2:-61850231 None:intergenic
AGACGGCCTGACCACTTGGG+AGG 0.643248 8.2:-61850105 None:intergenic
TGAGGAGATGGATATATCTG+GGG 0.644366 8.2:+61850683 MS.gene016652:CDS
TCCACCATAGAGTGTGCTGG+AGG 0.646324 8.2:+61850198 MS.gene016652:CDS
CCACTTGGGAGGTACGGCAA+GGG 0.646374 8.2:-61850094 None:intergenic
CCCTTGCCGTACCTCCCAAG+TGG 0.650312 8.2:+61850094 MS.gene016652:CDS
GAACCACATGGAGCAACCGG+AGG 0.670618 8.2:+61850330 MS.gene016652:CDS
TTGAAAGTGATGAGTAATGG+CGG 0.675133 8.2:+61850411 MS.gene016652:CDS
GAGGAGATGGATATATCTGG+GGG 0.677404 8.2:+61850684 MS.gene016652:CDS
CCAATGACGATCGAACCACA+TGG 0.678704 8.2:+61850318 MS.gene016652:CDS
AAAGTGATGAGTAATGGCGG+AGG 0.693219 8.2:+61850414 MS.gene016652:CDS
CATGACAACAGGTTGCATGG+TGG 0.757398 8.2:+61850362 MS.gene016652:CDS
TAAGCGTAGCTATAAGCACG+AGG 0.764294 8.2:-61850558 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTTTTTTTTTTGA+AGG + chr8.2:61850767-61850786 MS.gene016652:CDS 10.0%
! AACAACAATCATAACATTGT+TGG - chr8.2:61850727-61850746 None:intergenic 25.0%
ATTACTCATCACTTTCAACT+CGG - chr8.2:61850409-61850428 None:intergenic 30.0%
!! TAGGTATTGGAAGAGAATTA+GGG - chr8.2:61849941-61849960 None:intergenic 30.0%
!! TTAGGTATTGGAAGAGAATT+AGG - chr8.2:61849942-61849961 None:intergenic 30.0%
!!! TTGTTTTGATGTTGTTCTTG+TGG + chr8.2:61850800-61850819 MS.gene016652:CDS 30.0%
AAAAACTGCGAGTATGAACT+TGG - chr8.2:61850525-61850544 None:intergenic 35.0%
ATTCTCTTCCAATACCTAAC+TGG + chr8.2:61849943-61849962 MS.gene016652:CDS 35.0%
GAGTTGAAAGTGATGAGTAA+TGG + chr8.2:61850408-61850427 MS.gene016652:CDS 35.0%
TATAGCTACGCTTATGATGA+TGG + chr8.2:61850567-61850586 MS.gene016652:CDS 35.0%
TGTTGTTCTTGTGGTGAATT+TGG + chr8.2:61850809-61850828 MS.gene016652:CDS 35.0%
TTAGCCGAGTTTACACTTAA+CGG + chr8.2:61850243-61850262 MS.gene016652:CDS 35.0%
TTGAAAGTGATGAGTAATGG+CGG + chr8.2:61850411-61850430 MS.gene016652:CDS 35.0%
TTTACACTTAACGGTGCAAA+CGG + chr8.2:61850252-61850271 MS.gene016652:CDS 35.0%
! GCACTTGTTAACAATTGTGA+AGG - chr8.2:61849983-61850002 None:intergenic 35.0%
! TGTAACACAGGAGAATTTTC+CGG - chr8.2:61850163-61850182 None:intergenic 35.0%
AACTCAATCAACCATCGCTT+TGG + chr8.2:61849912-61849931 MS.gene016652:CDS 40.0%
AATTAGGGTAACCAAAGCGA+TGG - chr8.2:61849926-61849945 None:intergenic 40.0%
ACAAGTGCAACTACACAGTT+TGG + chr8.2:61849995-61850014 MS.gene016652:CDS 40.0%
ACTTGTGGGACAAAAAGTGA+TGG - chr8.2:61850628-61850647 None:intergenic 40.0%
ATATCCATCTCCTCAGACAT+TGG - chr8.2:61850678-61850697 None:intergenic 40.0%
CATACGAACCAGTTAGGTAT+TGG - chr8.2:61849954-61849973 None:intergenic 40.0%
CTGAGGAGATGGATATATCT+GGG + chr8.2:61850682-61850701 MS.gene016652:CDS 40.0%
GATCCACAATACTGTTGTAG+TGG + chr8.2:61850471-61850490 MS.gene016652:CDS 40.0%
GGAAAATTCTCCTGTGTTAC+AGG + chr8.2:61850162-61850181 MS.gene016652:CDS 40.0%
GTTCTTGTGGTGAATTTGGT+AGG + chr8.2:61850813-61850832 MS.gene016652:CDS 40.0%
TCTGAGGAGATGGATATATC+TGG + chr8.2:61850681-61850700 MS.gene016652:CDS 40.0%
TGAGGAGATGGATATATCTG+GGG + chr8.2:61850683-61850702 MS.gene016652:CDS 40.0%
TGCACCGTTAAGTGTAAACT+CGG - chr8.2:61850250-61850269 None:intergenic 40.0%
TTGTTGCATACGAACCAGTT+AGG - chr8.2:61849960-61849979 None:intergenic 40.0%
! GTTTGGCCTGGAATTTTATC+CGG + chr8.2:61850012-61850031 MS.gene016652:CDS 40.0%
AAAGTGATGAGTAATGGCGG+AGG + chr8.2:61850414-61850433 MS.gene016652:CDS 45.0%
AATCTTGAGAGCAGAGGGTA+CGG - chr8.2:61850137-61850156 None:intergenic 45.0%
ACAACACCGTTCTCTACAAC+CGG + chr8.2:61850042-61850061 MS.gene016652:CDS 45.0%
ATCTCCAATGTCTGAGGAGA+TGG + chr8.2:61850671-61850690 MS.gene016652:CDS 45.0%
CATGTGGTTCGATCGTCATT+GGG - chr8.2:61850320-61850339 None:intergenic 45.0%
CCACAAGTTCGATCCAATCT+GGG + chr8.2:61850640-61850659 MS.gene016652:CDS 45.0%
CCAGATTGGATCGAACTTGT+GGG - chr8.2:61850642-61850661 None:intergenic 45.0%
CGAGAAATCTCCAATGTCTG+AGG + chr8.2:61850665-61850684 MS.gene016652:CDS 45.0%
CTCATCACTTTCAACTCGGT+TGG - chr8.2:61850405-61850424 None:intergenic 45.0%
GAGATTTCTCGTTCCCAGAT+TGG - chr8.2:61850656-61850675 None:intergenic 45.0%
GAGGAGATGGATATATCTGG+GGG + chr8.2:61850684-61850703 MS.gene016652:CDS 45.0%
GTAAACTCGGCTAATGTAGC+CGG - chr8.2:61850237-61850256 None:intergenic 45.0%
TAAGCGTAGCTATAAGCACG+AGG - chr8.2:61850561-61850580 None:intergenic 45.0%
! AAAAGCGCATGTGAAGCGTT+TGG + chr8.2:61850447-61850466 MS.gene016652:CDS 45.0%
! AAAGCGCATGTGAAGCGTTT+GGG + chr8.2:61850448-61850467 MS.gene016652:CDS 45.0%
! AACACAGGAGAATTTTCCGG+TGG - chr8.2:61850160-61850179 None:intergenic 45.0%
! TTTCTTCGACGTTAGTCTCG+TGG + chr8.2:61850281-61850300 MS.gene016652:CDS 45.0%
!! GAACTTGGCTTGCATGTATC+TGG - chr8.2:61850510-61850529 None:intergenic 45.0%
!! TGTAGAGAACGGTGTTGTTC+CGG - chr8.2:61850040-61850059 None:intergenic 45.0%
AGCACAGTCACCTGTAACAC+AGG - chr8.2:61850175-61850194 None:intergenic 50.0%
ATCGAACCACATGGAGCAAC+CGG + chr8.2:61850327-61850346 MS.gene016652:CDS 50.0%
CATGACAACAGGTTGCATGG+TGG + chr8.2:61850362-61850381 MS.gene016652:CDS 50.0%
CCAATGACGATCGAACCACA+TGG + chr8.2:61850318-61850337 MS.gene016652:CDS 50.0%
CCATGTGGTTCGATCGTCAT+TGG - chr8.2:61850321-61850340 None:intergenic 50.0%
CCCACAAGTTCGATCCAATC+TGG + chr8.2:61850639-61850658 MS.gene016652:CDS 50.0%
CCCAGATTGGATCGAACTTG+TGG - chr8.2:61850643-61850662 None:intergenic 50.0%
CTCTGCTCTCAAGATTCCAC+CGG + chr8.2:61850141-61850160 MS.gene016652:CDS 50.0%
CTGCATGACAACAGGTTGCA+TGG + chr8.2:61850359-61850378 MS.gene016652:CDS 50.0%
GCAAAGCCGGTTGTAGAGAA+CGG - chr8.2:61850051-61850070 None:intergenic 50.0%
GCGCCACTACAACAGTATTG+TGG - chr8.2:61850477-61850496 None:intergenic 50.0%
GGTGGAATCTTGAGAGCAGA+GGG - chr8.2:61850142-61850161 None:intergenic 50.0%
GTTTCCTCCAGCACACTCTA+TGG - chr8.2:61850205-61850224 None:intergenic 50.0%
TGCAACTACACAGTTTGGCC+TGG + chr8.2:61850000-61850019 MS.gene016652:CDS 50.0%
! AAGCGCATGTGAAGCGTTTG+GGG + chr8.2:61850449-61850468 MS.gene016652:CDS 50.0%
! TTCGACGTTAGTCTCGTGGA+CGG + chr8.2:61850285-61850304 MS.gene016652:CDS 50.0%
AACTCGGCTAATGTAGCCGG+TGG - chr8.2:61850234-61850253 None:intergenic 55.0%
AAGTGGTCAGGCCGTCTATG+GGG + chr8.2:61850111-61850130 MS.gene016652:CDS 55.0%
CAAGTGGTCAGGCCGTCTAT+GGG + chr8.2:61850110-61850129 MS.gene016652:CDS 55.0%
CATAGACGGCCTGACCACTT+GGG - chr8.2:61850111-61850130 None:intergenic 55.0%
CGGTGGAATCTTGAGAGCAG+AGG - chr8.2:61850143-61850162 None:intergenic 55.0%
GGCGGAAACTGCATGACAAC+AGG + chr8.2:61850351-61850370 MS.gene016652:CDS 55.0%
GTGGTTCGATCGTCATTGGG+AGG - chr8.2:61850317-61850336 None:intergenic 55.0%
TCCACCATAGAGTGTGCTGG+AGG + chr8.2:61850198-61850217 MS.gene016652:CDS 55.0%
TCCAGCACACTCTATGGTGG+AGG - chr8.2:61850199-61850218 None:intergenic 55.0%
TCCTCCACCATAGAGTGTGC+TGG + chr8.2:61850195-61850214 MS.gene016652:CDS 55.0%
TCCTCCAGCACACTCTATGG+TGG - chr8.2:61850202-61850221 None:intergenic 55.0%
TGGAGGAAACGCTCAACCAC+CGG + chr8.2:61850215-61850234 MS.gene016652:CDS 55.0%
TGTCATGCAGTTTCCGCCTC+CGG - chr8.2:61850349-61850368 None:intergenic 55.0%
! CCTGGAATTTTATCCGGCGC+CGG + chr8.2:61850018-61850037 MS.gene016652:CDS 55.0%
CCAAGTGGTCAGGCCGTCTA+TGG + chr8.2:61850109-61850128 MS.gene016652:CDS 60.0%
CCATAGACGGCCTGACCACT+TGG - chr8.2:61850112-61850131 None:intergenic 60.0%
GAACCACATGGAGCAACCGG+AGG + chr8.2:61850330-61850349 MS.gene016652:CDS 60.0%
GCCTGACCACTTGGGAGGTA+CGG - chr8.2:61850103-61850122 None:intergenic 60.0%
! ACCACTTGGGAGGTACGGCA+AGG - chr8.2:61850098-61850117 None:intergenic 60.0%
! ACCGGCTTTGCTCTCCAACC+CGG + chr8.2:61850060-61850079 MS.gene016652:CDS 60.0%
! AGAGGGTACGGCCCCATAGA+CGG - chr8.2:61850125-61850144 None:intergenic 60.0%
! CCACTTGGGAGGTACGGCAA+GGG - chr8.2:61850097-61850116 None:intergenic 60.0%
! CCGGCGCCGGATAAAATTCC+AGG - chr8.2:61850021-61850040 None:intergenic 60.0%
!! GCAAGGGCATTGGATTCGCC+GGG - chr8.2:61850081-61850100 None:intergenic 60.0%
!! GGCAAGGGCATTGGATTCGC+CGG - chr8.2:61850082-61850101 None:intergenic 60.0%
AGACGGCCTGACCACTTGGG+AGG - chr8.2:61850108-61850127 None:intergenic 65.0%
CCACATGGAGCAACCGGAGG+CGG + chr8.2:61850333-61850352 MS.gene016652:CDS 65.0%
CCCTTGCCGTACCTCCCAAG+TGG + chr8.2:61850094-61850113 MS.gene016652:CDS 65.0%
GCCGTACCTCCCAAGTGGTC+AGG + chr8.2:61850099-61850118 MS.gene016652:CDS 65.0%
! GCCGGGTTGGAGAGCAAAGC+CGG - chr8.2:61850064-61850083 None:intergenic 65.0%
! GGGAGGTACGGCAAGGGCAT+TGG - chr8.2:61850091-61850110 None:intergenic 65.0%
!! GAACGGTGTTGTTCCGGCGC+CGG - chr8.2:61850034-61850053 None:intergenic 65.0%
!! GGGCATTGGATTCGCCGGGT+TGG - chr8.2:61850077-61850096 None:intergenic 65.0%
CCGCCTCCGGTTGCTCCATG+TGG - chr8.2:61850336-61850355 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 61849901 61850860 61849901 ID=MS.gene016652
chr8.2 mRNA 61849901 61850860 61849901 ID=MS.gene016652.t1;Parent=MS.gene016652
chr8.2 exon 61849901 61850860 61849901 ID=MS.gene016652.t1.exon1;Parent=MS.gene016652.t1
chr8.2 CDS 61849901 61850860 61849901 ID=cds.MS.gene016652.t1;Parent=MS.gene016652.t1
Gene Sequence

>MS.gene016652

ATGGCTGCTTCAACTCAATCAACCATCGCTTTGGTTACCCTAATTCTCTTCCAATACCTAACTGGTTCGTATGCAACAACCTTCACAATTGTTAACAAGTGCAACTACACAGTTTGGCCTGGAATTTTATCCGGCGCCGGAACAACACCGTTCTCTACAACCGGCTTTGCTCTCCAACCCGGCGAATCCAATGCCCTTGCCGTACCTCCCAAGTGGTCAGGCCGTCTATGGGGCCGTACCCTCTGCTCTCAAGATTCCACCGGAAAATTCTCCTGTGTTACAGGTGACTGTGCTTCCTCCACCATAGAGTGTGCTGGAGGAAACGCTCAACCACCGGCTACATTAGCCGAGTTTACACTTAACGGTGCAAACGGACTAGATTTCTTCGACGTTAGTCTCGTGGACGGTTACAACCTCCCAATGACGATCGAACCACATGGAGCAACCGGAGGCGGAAACTGCATGACAACAGGTTGCATGGTGGATTTGAACGCTGCGTGTCCAACCGAGTTGAAAGTGATGAGTAATGGCGGAGGTGTAGCGTGTAAAAGCGCATGTGAAGCGTTTGGGGATCCACAATACTGTTGTAGTGGCGCTTACGCTTCTCCAGATACATGCAAGCCAAGTTCATACTCGCAGTTTTTCAAGAGTGCTTGTCCTCGTGCTTATAGCTACGCTTATGATGATGGAACAAGCACTTTTACATGTGATTCTGCTGATTATACCATCACTTTTTGTCCCACAAGTTCGATCCAATCTGGGAACGAGAAATCTCCAATGTCTGAGGAGATGGATATATCTGGGGGACATGTGAACTTCACAGCCAACAATGTTATGATTGTTGTTATTATTTCTTTTGTTTTTTGTTTTTTGTTTTTTTTTTTGAAGGATTATTTCTTTTGTTTTGATGTTGTTCTTGTGGTGAATTTGGTAGGCTATGACTTGCCATTTTTCAATTAG
Protein sequence

>MS.gene016652.t1

MAASTQSTIALVTLILFQYLTGSYATTFTIVNKCNYTVWPGILSGAGTTPFSTTGFALQPGESNALAVPPKWSGRLWGRTLCSQDSTGKFSCVTGDCASSTIECAGGNAQPPATLAEFTLNGANGLDFFDVSLVDGYNLPMTIEPHGATGGGNCMTTGCMVDLNAACPTELKVMSNGGGVACKSACEAFGDPQYCCSGAYASPDTCKPSSYSQFFKSACPRAYSYAYDDGTSTFTCDSADYTITFCPTSSIQSGNEKSPMSEEMDISGGHVNFTANNVMIVVIISFVFCFLFFFLKDYFFCFDVVLVVNLVGYDLPFFN