AlfalfaGEDB | MS.gene056184

M. sativa cultivar XinJiangDaYe / MS.gene056184

KEGG: -
GO: -
PFAM: PF00314.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056184.t1	XP_003627755.1	86.1	310	19	1	1	286	1	310	2.40E-145	525

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056184.t1	A0A1P8B554	59.3	236	86	4	19	248	26	257	1.5e-76	287.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056184.t1	G7LEJ6	86.1	310	19	1	1	286	1	310	1.7e-145	525.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene003526	MS.gene056184	PPI
MS.gene004055	MS.gene056184	PPI
MS.gene016652	MS.gene056184	PPI
MS.gene019285	MS.gene056184	PPI
MS.gene040126	MS.gene056184	PPI
MS.gene050380	MS.gene056184	PPI
MS.gene056184	MS.gene27345	PPI
MS.gene056184	MS.gene92397	PPI
MS.gene056184	MS.gene010631	PPI
MS.gene056184	MS.gene61094	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056184.t1	MTR_8g037890	85.489	317	22	1	1	293	1	317	0.0	537
MS.gene056184.t1	MTR_8g056820	86.400	250	34	0	1	250	1	250	1.65e-158	443
MS.gene056184.t1	MTR_5g022310	77.055	292	58	5	1	284	1	291	5.21e-157	441
MS.gene056184.t1	MTR_5g022310	81.641	256	43	2	1	252	1	256	2.70e-149	419
MS.gene056184.t1	MTR_8g075550	62.460	309	98	6	1	295	1	305	7.31e-127	365
MS.gene056184.t1	MTR_1g025420	62.132	272	96	5	14	280	11	280	1.42e-116	339
MS.gene056184.t1	MTR_1g025420	67.490	243	73	4	14	251	11	252	1.00e-114	332
MS.gene056184.t1	MTR_3g114030	68.376	234	70	3	20	250	1	233	5.61e-113	327
MS.gene056184.t1	MTR_4g073730	63.673	245	80	3	11	247	5	248	4.13e-111	324
MS.gene056184.t1	MTR_4g073730	63.673	245	80	3	11	247	5	248	5.30e-111	325

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene056184.t1	AT4G36010	69.099	233	66	3	22	248	19	251	3.83e-116	337
MS.gene056184.t1	AT4G36010	69.099	233	66	3	22	248	19	251	3.83e-116	337
MS.gene056184.t1	AT2G17860	63.052	249	87	3	7	250	4	252	1.16e-110	322
MS.gene056184.t1	AT1G75800	59.459	259	96	5	9	259	5	262	2.38e-107	316
MS.gene056184.t1	AT4G38670	60.547	256	93	5	9	257	6	260	1.47e-105	310
MS.gene056184.t1	AT4G38670	60.547	256	93	5	9	257	6	260	1.47e-105	310
MS.gene056184.t1	AT4G38670	64.286	238	77	5	27	257	8	244	5.58e-105	307
MS.gene056184.t1	AT1G20030	52.649	302	114	6	22	295	16	316	1.03e-104	309
MS.gene056184.t1	AT1G20030	52.843	299	112	6	25	295	2	299	1.52e-104	308
MS.gene056184.t1	AT4G38660	58.268	254	100	3	6	259	10	257	5.53e-98	293

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Find 90 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCGCATGTGAAGCGTT+CGG	0.496016	8.1:+65689618	MS.gene056184:CDS
AAAGCGCATGTGAAGCGTTC+GGG	0.341225	8.1:+65689619	MS.gene056184:CDS
AAAGTGATGAGTAATGGCGG+AGG	0.693219	8.1:+65689585	MS.gene056184:CDS
AACAACAATCATAACATTGT+TGG	0.405286	8.1:-65689895	None:intergenic
AACTCAATCAACCATCGCTT+TGG	0.382050	8.1:+65689083	MS.gene056184:CDS
AACTCGGCTAATGTAGCTGG+CGG	0.652763	8.1:-65689402	None:intergenic
AAGCGCATGTGAAGCGTTCG+GGG	0.567814	8.1:+65689620	MS.gene056184:CDS
AAGTGGTCAGGCCGTCTATG+GGG	0.652593	8.1:+65689282	MS.gene056184:CDS
AATTAGGGTAACCAAAGCGA+TGG	0.636779	8.1:-65689094	None:intergenic
ACAACACCGTTCTCTACAAC+CGG	0.459009	8.1:+65689213	MS.gene056184:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATTGCGAGTATGAACT+TGG	-	chr8.1:65689696-65689715	None:intergenic	30.0%
ATTACTCATCACTTTCAACT+CGG	-	chr8.1:65689580-65689599	None:intergenic	30.0%
ATTCTCTTCCAATACCTAAC+TGG	+	chr8.1:65689114-65689133	MS.gene056184:CDS	35.0%
CATATGAACCAGTTAGGTAT+TGG	-	chr8.1:65689125-65689144	None:intergenic	35.0%
GAGTTGAAAGTGATGAGTAA+TGG	+	chr8.1:65689579-65689598	MS.gene056184:CDS	35.0%
GGAAAATTCTCTTGTGTTAC+CGG	+	chr8.1:65689333-65689352	MS.gene056184:CDS	35.0%
TATAGCTACGCTTATGATGA+TGG	+	chr8.1:65689738-65689757	MS.gene056184:CDS	35.0%
TGTTGTTCTTGTGGTGAATT+TGG	+	chr8.1:65689980-65689999	MS.gene056184:CDS	35.0%
TTAACACTTAACGGTGCAAA+CGG	+	chr8.1:65689423-65689442	MS.gene056184:CDS	35.0%
TTAGCCGAGTTAACACTTAA+CGG	+	chr8.1:65689414-65689433	MS.gene056184:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	65689072	65690016	65689072	ID=MS.gene056184
chr8.1	mRNA	65689072	65690016	65689072	ID=MS.gene056184.t1;Parent=MS.gene056184
chr8.1	exon	65689072	65690016	65689072	ID=MS.gene056184.t1.exon1;Parent=MS.gene056184.t1
chr8.1	CDS	65689072	65690016	65689072	ID=cds.MS.gene056184.t1;Parent=MS.gene056184.t1

Gene Sequence

>MS.gene056184

ATGGCTGCTTCAACTCAATCAACCATCGCTTTGGTTACCCTAATTCTCTTCCAATACCTAACTGGTTCATATGCAACAACATTCACAATTGTTAACGAGTGCAACTACACAGTTTGGCCTGGAATTTTATCCGGCGCCGGAACAACACCGTTCTCTACAACCGGCTTTGCTCTCCAATCCGGCGAATCCAAGGCCCTTGCCGTACCCCTCAAGTGGTCAGGCCGTCTATGGGGACGTACCCTCTGCTCTCAAGATTCCACCGGAAAATTCTCTTGTGTTACCGGTGACTGTGCTTCCTCCACCATAGAGTGTGCTGGAGGAAACGCTCAACCGCCAGCTACATTAGCCGAGTTAACACTTAACGGTGCAAACGGACTAGATTTCTTCGACGTTAGTCACGTGGACGGTTATAACCTCCCAATGATGATCGAACCACATGGAGCAACCGGAGGCGGAAACTGCATGACAACAGGTTGCATGGTGGATTTGAATGCGGCGTGTCCAACCGAGTTGAAAGTGATGAGTAATGGCGGAGGTGTAGCATGTAAAAGCGCATGTGAAGCGTTCGGGGATCCACAATATTGTTGCAGTGGCGCTTACGCTTCTCCAGACACATGCAAGCCAAGTTCATACTCGCAATTTTTCAAGAATGCTTGTCCTCGTGCTTATAGCTACGCTTATGATGATGGAACAAGCACTTTTACATGTGATTCTGCTGATTATACCATCACTTTTTGTCCCACAAGTTCGATCCAATCTGGGAACGAGAAATCTCCAATGTCTGAGGAGATGGATATATCTGGGGGACATGTGAACTTCACAGCCAACAATGTTATGATTGTTGTTATTATTTCTTTTGTTTTTTGTTTTTTGTTTTTTTTTTTGAGGGATTATTTCTTTTGTTTTGATGTTGTTCTTGTGGTGAATTTGGTAGGCTATGACTAA

Protein sequence

>MS.gene056184.t1

MAASTQSTIALVTLILFQYLTGSYATTFTIVNECNYTVWPGILSGAGTTPFSTTGFALQSGESKALAVPLKWSGRLWGRTLCSQDSTGKFSCVTGDCASSTIECAGGNAQPPATLAELTLNGANGLDFFDVSHVDGYNLPMMIEPHGATGGGNCMTTGCMVDLNAACPTELKVMSNGGGVACKSACEAFGDPQYCCSGAYASPDTCKPSSYSQFFKNACPRAYSYAYDDGTSTFTCDSADYTITFCPTSSIQSGNEKSPMSEEMDISGGHVNFTANNVMIVVIISFVFCFLFFFLRDYFFCFDVVLVVNLVGYD