AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056184

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056184.t1 MTR_8g037890 85.489 317 22 1 1 293 1 317 0.0 537
MS.gene056184.t1 MTR_8g056820 86.400 250 34 0 1 250 1 250 1.65e-158 443
MS.gene056184.t1 MTR_5g022310 77.055 292 58 5 1 284 1 291 5.21e-157 441
MS.gene056184.t1 MTR_5g022310 81.641 256 43 2 1 252 1 256 2.70e-149 419
MS.gene056184.t1 MTR_8g075550 62.460 309 98 6 1 295 1 305 7.31e-127 365
MS.gene056184.t1 MTR_1g025420 62.132 272 96 5 14 280 11 280 1.42e-116 339
MS.gene056184.t1 MTR_1g025420 67.490 243 73 4 14 251 11 252 1.00e-114 332
MS.gene056184.t1 MTR_3g114030 68.376 234 70 3 20 250 1 233 5.61e-113 327
MS.gene056184.t1 MTR_4g073730 63.673 245 80 3 11 247 5 248 4.13e-111 324
MS.gene056184.t1 MTR_4g073730 63.673 245 80 3 11 247 5 248 5.30e-111 325
MS.gene056184.t1 MTR_4g073720 59.167 240 87 5 9 246 9 239 1.86e-92 278
MS.gene056184.t1 MTR_5g022350 52.768 271 114 7 6 272 12 272 1.07e-87 265
MS.gene056184.t1 MTR_8g075510 54.000 250 104 6 4 252 10 249 2.65e-84 254
MS.gene056184.t1 MTR_7g102380 51.020 245 114 5 7 249 3 243 3.16e-83 251
MS.gene056184.t1 MTR_8g075510 55.274 237 95 6 11 246 17 243 4.83e-82 251
MS.gene056184.t1 MTR_2g069660 53.527 241 104 4 9 247 9 243 2.18e-81 246
MS.gene056184.t1 MTR_2g067980 54.113 231 100 3 24 250 22 250 5.81e-80 262
MS.gene056184.t1 MTR_2g068030 51.584 221 103 3 28 246 25 243 4.15e-78 239
MS.gene056184.t1 MTR_2g068655 49.785 233 115 2 22 253 27 258 8.20e-78 240
MS.gene056184.t1 MTR_1g062350 50.806 248 114 6 4 249 3 244 5.42e-77 235
MS.gene056184.t1 MTR_1g062660 51.464 239 109 5 13 249 11 244 5.97e-77 235
MS.gene056184.t1 MTR_8g036215 49.372 239 116 4 9 246 3 237 9.45e-77 234
MS.gene056184.t1 MTR_1g062370 50.000 248 116 6 4 249 3 244 1.05e-76 235
MS.gene056184.t1 MTR_1g062590 48.583 247 119 5 3 247 2 242 5.86e-76 233
MS.gene056184.t1 MTR_1g062340 51.073 233 107 5 19 249 17 244 7.35e-76 233
MS.gene056184.t1 MTR_1g021945 53.509 228 100 4 25 250 25 248 1.64e-75 232
MS.gene056184.t1 MTR_1g062630 49.402 251 119 6 3 251 2 246 2.82e-74 229
MS.gene056184.t1 MTR_6g079580 49.793 241 112 5 11 247 5 240 7.44e-73 225
MS.gene056184.t1 MTR_3g111620 51.754 228 104 5 25 250 26 249 2.84e-72 224
MS.gene056184.t1 MTR_8g107140 48.000 250 122 5 1 247 1 245 2.67e-70 219
MS.gene056184.t1 MTR_5g059200 45.703 256 124 7 1 252 1 245 5.11e-69 216
MS.gene056184.t1 MTR_5g023850 46.850 254 96 4 1 250 1 219 9.06e-69 214
MS.gene056184.t1 MTR_7g062610 45.492 244 129 3 5 247 2 242 3.76e-68 213
MS.gene056184.t1 MTR_3g068015 47.556 225 113 4 25 247 27 248 3.00e-67 211
MS.gene056184.t1 MTR_1g062690 45.968 248 102 7 4 249 3 220 4.52e-63 199
MS.gene056184.t1 MTR_6g009480 41.200 250 143 4 1 247 4 252 2.34e-61 196
MS.gene056184.t1 MTR_4g063630 41.909 241 128 8 13 246 16 251 2.20e-57 186
MS.gene056184.t1 MTR_2g067990 46.121 232 97 8 19 249 20 224 9.85e-57 197
MS.gene056184.t1 MTR_5g010640 39.608 255 127 9 1 247 1 236 8.38e-49 163
MS.gene056184.t1 MTR_2g067970 47.568 185 92 5 69 250 3 185 2.29e-47 170
MS.gene056184.t1 MTR_8g096900 41.004 239 115 9 11 247 34 248 1.84e-44 152
MS.gene056184.t1 MTR_5g010635 39.648 227 113 8 23 247 21 225 3.18e-43 149
MS.gene056184.t1 MTR_5g022350 51.079 139 62 3 14 150 82 216 2.58e-38 135
MS.gene056184.t1 MTR_2g063150 33.962 212 131 5 27 236 35 239 6.10e-36 130
MS.gene056184.t1 MTR_8g089020 49.231 130 61 2 110 239 32 156 7.58e-36 127
MS.gene056184.t1 MTR_7g076360 35.849 212 72 4 25 236 7 154 3.11e-31 115
MS.gene056184.t1 MTR_1g062390 30.830 253 154 8 1 247 1 238 1.83e-29 113
MS.gene056184.t1 MTR_8g096910 45.324 139 60 6 9 141 1 129 2.33e-28 108
MS.gene056184.t1 MTR_8g096920 40.580 138 71 5 9 144 1 129 6.88e-23 93.6
MS.gene056184.t1 MTR_3g081550 46.316 95 48 2 111 203 16 109 1.80e-17 77.4
MS.gene056184.t1 MTR_1g062640 36.364 99 60 2 70 168 51 146 3.13e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056184.t1 AT4G36010 69.099 233 66 3 22 248 19 251 3.83e-116 337
MS.gene056184.t1 AT4G36010 69.099 233 66 3 22 248 19 251 3.83e-116 337
MS.gene056184.t1 AT2G17860 63.052 249 87 3 7 250 4 252 1.16e-110 322
MS.gene056184.t1 AT1G75800 59.459 259 96 5 9 259 5 262 2.38e-107 316
MS.gene056184.t1 AT4G38670 60.547 256 93 5 9 257 6 260 1.47e-105 310
MS.gene056184.t1 AT4G38670 60.547 256 93 5 9 257 6 260 1.47e-105 310
MS.gene056184.t1 AT4G38670 64.286 238 77 5 27 257 8 244 5.58e-105 307
MS.gene056184.t1 AT1G20030 52.649 302 114 6 22 295 16 316 1.03e-104 309
MS.gene056184.t1 AT1G20030 52.843 299 112 6 25 295 2 299 1.52e-104 308
MS.gene056184.t1 AT4G38660 58.268 254 100 3 6 259 10 257 5.53e-98 293
MS.gene056184.t1 AT4G38660 60.000 240 90 3 20 259 2 235 5.95e-96 286
MS.gene056184.t1 AT4G24180 57.200 250 96 5 6 248 7 252 8.94e-95 281
MS.gene056184.t1 AT4G24180 57.317 246 93 5 11 248 16 257 1.13e-94 281
MS.gene056184.t1 AT4G24180 57.317 246 93 5 11 248 16 257 3.35e-94 282
MS.gene056184.t1 AT4G24180 57.200 250 96 5 6 248 7 252 3.58e-94 281
MS.gene056184.t1 AT5G24620 53.659 246 106 4 9 247 7 251 9.78e-86 264
MS.gene056184.t1 AT5G24620 54.217 249 101 4 23 265 77 318 1.35e-85 265
MS.gene056184.t1 AT5G24620 54.217 249 101 4 23 265 98 339 1.49e-85 266
MS.gene056184.t1 AT4G24180 55.128 234 94 5 6 232 7 236 1.35e-83 255
MS.gene056184.t1 AT4G24180 55.217 230 91 5 11 232 16 241 2.31e-83 254
MS.gene056184.t1 AT5G38280 44.483 290 148 5 8 291 6 288 1.28e-82 263
MS.gene056184.t1 AT5G38280 45.423 284 142 5 8 285 6 282 2.06e-82 262
MS.gene056184.t1 AT1G75030 52.590 251 108 8 6 250 1 246 1.52e-81 247
MS.gene056184.t1 AT1G19320 50.996 251 113 5 1 246 1 246 3.77e-80 244
MS.gene056184.t1 AT1G75040 53.527 241 106 4 7 247 5 239 2.22e-79 241
MS.gene056184.t1 AT1G75050 51.822 247 111 6 7 250 5 246 3.51e-78 239
MS.gene056184.t1 AT1G77700 40.924 303 156 8 12 310 43 326 1.94e-75 234
MS.gene056184.t1 AT1G18250 51.542 227 103 4 23 247 19 240 4.52e-75 231
MS.gene056184.t1 AT1G77700 42.308 286 146 7 25 310 88 354 7.13e-75 234
MS.gene056184.t1 AT1G18250 51.556 225 102 4 25 247 20 239 1.06e-74 229
MS.gene056184.t1 AT1G73620 51.556 225 102 4 25 247 41 260 3.77e-73 226
MS.gene056184.t1 AT1G77700 48.536 239 109 6 12 246 43 271 4.33e-73 228
MS.gene056184.t1 AT5G02140 40.283 283 159 5 4 285 2 275 1.04e-66 211
MS.gene056184.t1 AT4G36000 64.780 159 47 3 102 259 1 151 2.73e-66 207
MS.gene056184.t1 AT4G36000 64.780 159 47 3 102 259 1 151 2.73e-66 207
MS.gene056184.t1 AT5G02140 43.673 245 132 3 4 247 2 241 3.68e-65 205
MS.gene056184.t1 AT4G18253 43.673 245 127 4 9 250 5 241 6.33e-64 202
MS.gene056184.t1 AT5G40020 41.921 229 128 4 23 249 25 250 1.02e-59 192
MS.gene056184.t1 AT2G28790 43.388 242 128 7 10 246 11 248 3.45e-59 190
MS.gene056184.t1 AT2G28790 43.388 242 128 7 10 246 36 273 3.88e-59 191
MS.gene056184.t1 AT4G18250 42.915 247 132 5 5 249 35 274 2.88e-58 199
MS.gene056184.t1 AT1G70250 42.975 242 119 8 25 255 144 377 3.82e-58 200
MS.gene056184.t1 AT4G11650 41.065 263 128 10 1 261 1 238 5.05e-52 172
MS.gene056184.t1 AT5G24620 62.185 119 40 1 134 247 16 134 1.52e-43 151
MS.gene056184.t1 AT2G24810 61.039 77 30 0 170 246 116 192 1.56e-28 109

Find 90 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGGTATTGGAAGAGAATT+AGG 0.170473 8.1:-65689110 None:intergenic
TCTGAGGAGATGGATATATC+TGG 0.261477 8.1:+65689852 MS.gene056184:CDS
TCAAGTGGTCAGGCCGTCTA+TGG 0.272451 8.1:+65689280 MS.gene056184:CDS
TGTTGTTCTTGTGGTGAATT+TGG 0.294332 8.1:+65689980 MS.gene056184:CDS
GGAAAATTCTCTTGTGTTAC+CGG 0.309835 8.1:+65689333 MS.gene056184:CDS
AAAGCGCATGTGAAGCGTTC+GGG 0.341225 8.1:+65689619 MS.gene056184:CDS
CCCACAAGTTCGATCCAATC+TGG 0.346023 8.1:+65689810 MS.gene056184:CDS
ATTCTCTTCCAATACCTAAC+TGG 0.364848 8.1:+65689114 MS.gene056184:CDS
GAGGGGTACGGCAAGGGCCT+TGG 0.365730 8.1:-65689259 None:intergenic
GAACTTGGCTTGCATGTGTC+TGG 0.377756 8.1:-65689678 None:intergenic
AACTCAATCAACCATCGCTT+TGG 0.382050 8.1:+65689083 MS.gene056184:CDS
TGTAGAGAACGGTGTTGTTC+CGG 0.383816 8.1:-65689208 None:intergenic
CCGGCGCCGGATAAAATTCC+AGG 0.384166 8.1:-65689189 None:intergenic
CATATGAACCAGTTAGGTAT+TGG 0.386121 8.1:-65689122 None:intergenic
GAGATTTCTCGTTCCCAGAT+TGG 0.394550 8.1:-65689824 None:intergenic
CCATGTGGTTCGATCATCAT+TGG 0.396722 8.1:-65689489 None:intergenic
AACAACAATCATAACATTGT+TGG 0.405286 8.1:-65689895 None:intergenic
CTCATCACTTTCAACTCGGT+TGG 0.422630 8.1:-65689573 None:intergenic
ACGAGTGCAACTACACAGTT+TGG 0.425166 8.1:+65689166 MS.gene056184:CDS
ATCGAACCACATGGAGCAAC+CGG 0.428774 8.1:+65689498 MS.gene056184:CDS
TGTCATGCAGTTTCCGCCTC+CGG 0.443562 8.1:-65689517 None:intergenic
TTGTTGCATATGAACCAGTT+AGG 0.449950 8.1:-65689128 None:intergenic
TTAGCCGAGTTAACACTTAA+CGG 0.454131 8.1:+65689414 MS.gene056184:CDS
GGGCCTTGGATTCGCCGGAT+TGG 0.458692 8.1:-65689245 None:intergenic
CAAGTGGTCAGGCCGTCTAT+GGG 0.458980 8.1:+65689281 MS.gene056184:CDS
ACAACACCGTTCTCTACAAC+CGG 0.459009 8.1:+65689213 MS.gene056184:CDS
GCCGTACCCCTCAAGTGGTC+AGG 0.460490 8.1:+65689270 MS.gene056184:CDS
GTTTCCTCCAGCACACTCTA+TGG 0.465520 8.1:-65689373 None:intergenic
CCACATGGAGCAACCGGAGG+CGG 0.465833 8.1:+65689504 MS.gene056184:CDS
GCCGGATTGGAGAGCAAAGC+CGG 0.466764 8.1:-65689232 None:intergenic
TAGGTATTGGAAGAGAATTA+GGG 0.467250 8.1:-65689109 None:intergenic
GGCGGAAACTGCATGACAAC+AGG 0.472230 8.1:+65689522 MS.gene056184:CDS
TATAGCTACGCTTATGATGA+TGG 0.472777 8.1:+65689738 MS.gene056184:CDS
TCCTCCACCATAGAGTGTGC+TGG 0.480343 8.1:+65689366 MS.gene056184:CDS
ATATCCATCTCCTCAGACAT+TGG 0.484864 8.1:-65689846 None:intergenic
ATCTCCAATGTCTGAGGAGA+TGG 0.486815 8.1:+65689842 MS.gene056184:CDS
CCAGATTGGATCGAACTTGT+GGG 0.490228 8.1:-65689810 None:intergenic
CTGAGGAGATGGATATATCT+GGG 0.492913 8.1:+65689853 MS.gene056184:CDS
AAAAGCGCATGTGAAGCGTT+CGG 0.496016 8.1:+65689618 MS.gene056184:CDS
GTTCTTGTGGTGAATTTGGT+AGG 0.497434 8.1:+65689984 MS.gene056184:CDS
CCCAGATTGGATCGAACTTG+TGG 0.498644 8.1:-65689811 None:intergenic
CATGTGGTTCGATCATCATT+GGG 0.503855 8.1:-65689488 None:intergenic
GGCAAGGGCCTTGGATTCGC+CGG 0.509446 8.1:-65689250 None:intergenic
GAACGGTGTTGTTCCGGCGC+CGG 0.511342 8.1:-65689202 None:intergenic
TTAACACTTAACGGTGCAAA+CGG 0.519328 8.1:+65689423 MS.gene056184:CDS
ACCGGCTTTGCTCTCCAATC+CGG 0.521392 8.1:+65689231 MS.gene056184:CDS
TGCAACTACACAGTTTGGCC+TGG 0.523345 8.1:+65689171 MS.gene056184:CDS
GTTAACTCGGCTAATGTAGC+TGG 0.525316 8.1:-65689405 None:intergenic
TCTCCAATCCGGCGAATCCA+AGG 0.538634 8.1:+65689242 MS.gene056184:CDS
CCACTTGAGGGGTACGGCAA+GGG 0.539972 8.1:-65689265 None:intergenic
CCACAAGTTCGATCCAATCT+GGG 0.541949 8.1:+65689811 MS.gene056184:CDS
TAGACGGCCTGACCACTTGA+GGG 0.545483 8.1:-65689277 None:intergenic
ACCACTTGAGGGGTACGGCA+AGG 0.548954 8.1:-65689266 None:intergenic
TGCACCGTTAAGTGTTAACT+CGG 0.557168 8.1:-65689418 None:intergenic
GCCTGACCACTTGAGGGGTA+CGG 0.559570 8.1:-65689271 None:intergenic
AGAGGGTACGTCCCCATAGA+CGG 0.562547 8.1:-65689293 None:intergenic
CCGCCTCCGGTTGCTCCATG+TGG 0.564023 8.1:-65689504 None:intergenic
TCCAGCACACTCTATGGTGG+AGG 0.567323 8.1:-65689367 None:intergenic
ATAGACGGCCTGACCACTTG+AGG 0.567345 8.1:-65689278 None:intergenic
AAGCGCATGTGAAGCGTTCG+GGG 0.567814 8.1:+65689620 MS.gene056184:CDS
CTCTGCTCTCAAGATTCCAC+CGG 0.569324 8.1:+65689312 MS.gene056184:CDS
CTGCATGACAACAGGTTGCA+TGG 0.576620 8.1:+65689530 MS.gene056184:CDS
GGTGGAGGAAGCACAGTCAC+CGG 0.577174 8.1:-65689352 None:intergenic
GATCCACAATATTGTTGCAG+TGG 0.586725 8.1:+65689642 MS.gene056184:CDS
ATTACTCATCACTTTCAACT+CGG 0.591426 8.1:-65689577 None:intergenic
GCGCCACTGCAACAATATTG+TGG 0.592387 8.1:-65689645 None:intergenic
CCCTTGCCGTACCCCTCAAG+TGG 0.601779 8.1:+65689265 MS.gene056184:CDS
CGGTGGAATCTTGAGAGCAG+AGG 0.605968 8.1:-65689311 None:intergenic
CGAGAAATCTCCAATGTCTG+AGG 0.606622 8.1:+65689836 MS.gene056184:CDS
GCAAAGCCGGTTGTAGAGAA+CGG 0.610915 8.1:-65689219 None:intergenic
TCCTCCAGCACACTCTATGG+TGG 0.611738 8.1:-65689370 None:intergenic
GAGTTGAAAGTGATGAGTAA+TGG 0.615914 8.1:+65689579 MS.gene056184:CDS
GGTGGAATCTTGAGAGCAGA+GGG 0.624367 8.1:-65689310 None:intergenic
TTTCTTCGACGTTAGTCACG+TGG 0.627829 8.1:+65689452 MS.gene056184:CDS
AATTAGGGTAACCAAAGCGA+TGG 0.636779 8.1:-65689094 None:intergenic
TGAGGAGATGGATATATCTG+GGG 0.644366 8.1:+65689854 MS.gene056184:CDS
TCCACCATAGAGTGTGCTGG+AGG 0.646324 8.1:+65689369 MS.gene056184:CDS
AGACGGCCTGACCACTTGAG+GGG 0.648811 8.1:-65689276 None:intergenic
TTCGACGTTAGTCACGTGGA+CGG 0.649300 8.1:+65689456 MS.gene056184:CDS
AAGTGGTCAGGCCGTCTATG+GGG 0.652593 8.1:+65689282 MS.gene056184:CDS
AACTCGGCTAATGTAGCTGG+CGG 0.652763 8.1:-65689402 None:intergenic
GTGGTTCGATCATCATTGGG+AGG 0.653259 8.1:-65689485 None:intergenic
CCAATGATGATCGAACCACA+TGG 0.667726 8.1:+65689489 MS.gene056184:CDS
GAACCACATGGAGCAACCGG+AGG 0.670618 8.1:+65689501 MS.gene056184:CDS
TTGAAAGTGATGAGTAATGG+CGG 0.675133 8.1:+65689582 MS.gene056184:CDS
GAGGAGATGGATATATCTGG+GGG 0.677404 8.1:+65689855 MS.gene056184:CDS
TTGCATGGTGGATTTGAATG+CGG 0.687441 8.1:+65689545 MS.gene056184:CDS
AAAGTGATGAGTAATGGCGG+AGG 0.693219 8.1:+65689585 MS.gene056184:CDS
CATGACAACAGGTTGCATGG+TGG 0.757398 8.1:+65689533 MS.gene056184:CDS
TAAGCGTAGCTATAAGCACG+AGG 0.764294 8.1:-65689729 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTTTTTTTTTTGA+GGG + chr8.1:65689938-65689957 MS.gene056184:CDS 10.0%
!!! GTTTTTTGTTTTTTTTTTTG+AGG + chr8.1:65689937-65689956 MS.gene056184:CDS 15.0%
! AACAACAATCATAACATTGT+TGG - chr8.1:65689898-65689917 None:intergenic 25.0%
AAAAATTGCGAGTATGAACT+TGG - chr8.1:65689696-65689715 None:intergenic 30.0%
ATTACTCATCACTTTCAACT+CGG - chr8.1:65689580-65689599 None:intergenic 30.0%
!! TAGGTATTGGAAGAGAATTA+GGG - chr8.1:65689112-65689131 None:intergenic 30.0%
!! TTAGGTATTGGAAGAGAATT+AGG - chr8.1:65689113-65689132 None:intergenic 30.0%
!!! TTGTTTTGATGTTGTTCTTG+TGG + chr8.1:65689971-65689990 MS.gene056184:CDS 30.0%
ATTCTCTTCCAATACCTAAC+TGG + chr8.1:65689114-65689133 MS.gene056184:CDS 35.0%
CATATGAACCAGTTAGGTAT+TGG - chr8.1:65689125-65689144 None:intergenic 35.0%
GAGTTGAAAGTGATGAGTAA+TGG + chr8.1:65689579-65689598 MS.gene056184:CDS 35.0%
GGAAAATTCTCTTGTGTTAC+CGG + chr8.1:65689333-65689352 MS.gene056184:CDS 35.0%
TATAGCTACGCTTATGATGA+TGG + chr8.1:65689738-65689757 MS.gene056184:CDS 35.0%
TGTTGTTCTTGTGGTGAATT+TGG + chr8.1:65689980-65689999 MS.gene056184:CDS 35.0%
TTAACACTTAACGGTGCAAA+CGG + chr8.1:65689423-65689442 MS.gene056184:CDS 35.0%
TTAGCCGAGTTAACACTTAA+CGG + chr8.1:65689414-65689433 MS.gene056184:CDS 35.0%
TTGAAAGTGATGAGTAATGG+CGG + chr8.1:65689582-65689601 MS.gene056184:CDS 35.0%
TTGTTGCATATGAACCAGTT+AGG - chr8.1:65689131-65689150 None:intergenic 35.0%
! GGTAACACAAGAGAATTTTC+CGG - chr8.1:65689334-65689353 None:intergenic 35.0%
AACTCAATCAACCATCGCTT+TGG + chr8.1:65689083-65689102 MS.gene056184:CDS 40.0%
AATTAGGGTAACCAAAGCGA+TGG - chr8.1:65689097-65689116 None:intergenic 40.0%
ACTTGTGGGACAAAAAGTGA+TGG - chr8.1:65689799-65689818 None:intergenic 40.0%
ATATCCATCTCCTCAGACAT+TGG - chr8.1:65689849-65689868 None:intergenic 40.0%
CATGTGGTTCGATCATCATT+GGG - chr8.1:65689491-65689510 None:intergenic 40.0%
CTGAGGAGATGGATATATCT+GGG + chr8.1:65689853-65689872 MS.gene056184:CDS 40.0%
GATCCACAATATTGTTGCAG+TGG + chr8.1:65689642-65689661 MS.gene056184:CDS 40.0%
GTTCTTGTGGTGAATTTGGT+AGG + chr8.1:65689984-65690003 MS.gene056184:CDS 40.0%
TCTGAGGAGATGGATATATC+TGG + chr8.1:65689852-65689871 MS.gene056184:CDS 40.0%
TGAGGAGATGGATATATCTG+GGG + chr8.1:65689854-65689873 MS.gene056184:CDS 40.0%
TGCACCGTTAAGTGTTAACT+CGG - chr8.1:65689421-65689440 None:intergenic 40.0%
! AACACAAGAGAATTTTCCGG+TGG - chr8.1:65689331-65689350 None:intergenic 40.0%
! GTTTGGCCTGGAATTTTATC+CGG + chr8.1:65689183-65689202 MS.gene056184:CDS 40.0%
!! TTGCATGGTGGATTTGAATG+CGG + chr8.1:65689545-65689564 MS.gene056184:CDS 40.0%
AAAGTGATGAGTAATGGCGG+AGG + chr8.1:65689585-65689604 MS.gene056184:CDS 45.0%
ACAACACCGTTCTCTACAAC+CGG + chr8.1:65689213-65689232 MS.gene056184:CDS 45.0%
ACGAGTGCAACTACACAGTT+TGG + chr8.1:65689166-65689185 MS.gene056184:CDS 45.0%
ATCTCCAATGTCTGAGGAGA+TGG + chr8.1:65689842-65689861 MS.gene056184:CDS 45.0%
CCAATGATGATCGAACCACA+TGG + chr8.1:65689489-65689508 MS.gene056184:CDS 45.0%
CCACAAGTTCGATCCAATCT+GGG + chr8.1:65689811-65689830 MS.gene056184:CDS 45.0%
CCAGATTGGATCGAACTTGT+GGG - chr8.1:65689813-65689832 None:intergenic 45.0%
CCATGTGGTTCGATCATCAT+TGG - chr8.1:65689492-65689511 None:intergenic 45.0%
CGAGAAATCTCCAATGTCTG+AGG + chr8.1:65689836-65689855 MS.gene056184:CDS 45.0%
CTCATCACTTTCAACTCGGT+TGG - chr8.1:65689576-65689595 None:intergenic 45.0%
GAGATTTCTCGTTCCCAGAT+TGG - chr8.1:65689827-65689846 None:intergenic 45.0%
GAGGAGATGGATATATCTGG+GGG + chr8.1:65689855-65689874 MS.gene056184:CDS 45.0%
GTTAACTCGGCTAATGTAGC+TGG - chr8.1:65689408-65689427 None:intergenic 45.0%
TAAGCGTAGCTATAAGCACG+AGG - chr8.1:65689732-65689751 None:intergenic 45.0%
TTTCTTCGACGTTAGTCACG+TGG + chr8.1:65689452-65689471 MS.gene056184:CDS 45.0%
! AAAAGCGCATGTGAAGCGTT+CGG + chr8.1:65689618-65689637 MS.gene056184:CDS 45.0%
!! TGTAGAGAACGGTGTTGTTC+CGG - chr8.1:65689211-65689230 None:intergenic 45.0%
AACTCGGCTAATGTAGCTGG+CGG - chr8.1:65689405-65689424 None:intergenic 50.0%
ATCGAACCACATGGAGCAAC+CGG + chr8.1:65689498-65689517 MS.gene056184:CDS 50.0%
CATGACAACAGGTTGCATGG+TGG + chr8.1:65689533-65689552 MS.gene056184:CDS 50.0%
CCCACAAGTTCGATCCAATC+TGG + chr8.1:65689810-65689829 MS.gene056184:CDS 50.0%
CCCAGATTGGATCGAACTTG+TGG - chr8.1:65689814-65689833 None:intergenic 50.0%
CTCTGCTCTCAAGATTCCAC+CGG + chr8.1:65689312-65689331 MS.gene056184:CDS 50.0%
CTGCATGACAACAGGTTGCA+TGG + chr8.1:65689530-65689549 MS.gene056184:CDS 50.0%
GCAAAGCCGGTTGTAGAGAA+CGG - chr8.1:65689222-65689241 None:intergenic 50.0%
GCGCCACTGCAACAATATTG+TGG - chr8.1:65689648-65689667 None:intergenic 50.0%
GGTGGAATCTTGAGAGCAGA+GGG - chr8.1:65689313-65689332 None:intergenic 50.0%
GTGGTTCGATCATCATTGGG+AGG - chr8.1:65689488-65689507 None:intergenic 50.0%
GTTTCCTCCAGCACACTCTA+TGG - chr8.1:65689376-65689395 None:intergenic 50.0%
TGCAACTACACAGTTTGGCC+TGG + chr8.1:65689171-65689190 MS.gene056184:CDS 50.0%
TTCGACGTTAGTCACGTGGA+CGG + chr8.1:65689456-65689475 MS.gene056184:CDS 50.0%
! AAAGCGCATGTGAAGCGTTC+GGG + chr8.1:65689619-65689638 MS.gene056184:CDS 50.0%
!! GAACTTGGCTTGCATGTGTC+TGG - chr8.1:65689681-65689700 None:intergenic 50.0%
AAGTGGTCAGGCCGTCTATG+GGG + chr8.1:65689282-65689301 MS.gene056184:CDS 55.0%
ATAGACGGCCTGACCACTTG+AGG - chr8.1:65689281-65689300 None:intergenic 55.0%
CAAGTGGTCAGGCCGTCTAT+GGG + chr8.1:65689281-65689300 MS.gene056184:CDS 55.0%
CGGTGGAATCTTGAGAGCAG+AGG - chr8.1:65689314-65689333 None:intergenic 55.0%
GGCGGAAACTGCATGACAAC+AGG + chr8.1:65689522-65689541 MS.gene056184:CDS 55.0%
TAGACGGCCTGACCACTTGA+GGG - chr8.1:65689280-65689299 None:intergenic 55.0%
TCAAGTGGTCAGGCCGTCTA+TGG + chr8.1:65689280-65689299 MS.gene056184:CDS 55.0%
TCCACCATAGAGTGTGCTGG+AGG + chr8.1:65689369-65689388 MS.gene056184:CDS 55.0%
TCCAGCACACTCTATGGTGG+AGG - chr8.1:65689370-65689389 None:intergenic 55.0%
TCCTCCACCATAGAGTGTGC+TGG + chr8.1:65689366-65689385 MS.gene056184:CDS 55.0%
TCCTCCAGCACACTCTATGG+TGG - chr8.1:65689373-65689392 None:intergenic 55.0%
TCTCCAATCCGGCGAATCCA+AGG + chr8.1:65689242-65689261 MS.gene056184:CDS 55.0%
TGTCATGCAGTTTCCGCCTC+CGG - chr8.1:65689520-65689539 None:intergenic 55.0%
! AAGCGCATGTGAAGCGTTCG+GGG + chr8.1:65689620-65689639 MS.gene056184:CDS 55.0%
! ACCGGCTTTGCTCTCCAATC+CGG + chr8.1:65689231-65689250 MS.gene056184:CDS 55.0%
! AGAGGGTACGTCCCCATAGA+CGG - chr8.1:65689296-65689315 None:intergenic 55.0%
! CCTGGAATTTTATCCGGCGC+CGG + chr8.1:65689189-65689208 MS.gene056184:CDS 55.0%
AGACGGCCTGACCACTTGAG+GGG - chr8.1:65689279-65689298 None:intergenic 60.0%
GAACCACATGGAGCAACCGG+AGG + chr8.1:65689501-65689520 MS.gene056184:CDS 60.0%
GCCTGACCACTTGAGGGGTA+CGG - chr8.1:65689274-65689293 None:intergenic 60.0%
! ACCACTTGAGGGGTACGGCA+AGG - chr8.1:65689269-65689288 None:intergenic 60.0%
! CCACTTGAGGGGTACGGCAA+GGG - chr8.1:65689268-65689287 None:intergenic 60.0%
! CCGGCGCCGGATAAAATTCC+AGG - chr8.1:65689192-65689211 None:intergenic 60.0%
! GCCGGATTGGAGAGCAAAGC+CGG - chr8.1:65689235-65689254 None:intergenic 60.0%
! GGTGGAGGAAGCACAGTCAC+CGG - chr8.1:65689355-65689374 None:intergenic 60.0%
CCACATGGAGCAACCGGAGG+CGG + chr8.1:65689504-65689523 MS.gene056184:CDS 65.0%
CCCTTGCCGTACCCCTCAAG+TGG + chr8.1:65689265-65689284 MS.gene056184:CDS 65.0%
GCCGTACCCCTCAAGTGGTC+AGG + chr8.1:65689270-65689289 MS.gene056184:CDS 65.0%
GGCAAGGGCCTTGGATTCGC+CGG - chr8.1:65689253-65689272 None:intergenic 65.0%
GGGCCTTGGATTCGCCGGAT+TGG - chr8.1:65689248-65689267 None:intergenic 65.0%
!! GAACGGTGTTGTTCCGGCGC+CGG - chr8.1:65689205-65689224 None:intergenic 65.0%
CCGCCTCCGGTTGCTCCATG+TGG - chr8.1:65689507-65689526 None:intergenic 70.0%
! GAGGGGTACGGCAAGGGCCT+TGG - chr8.1:65689262-65689281 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 65689072 65690016 65689072 ID=MS.gene056184
chr8.1 mRNA 65689072 65690016 65689072 ID=MS.gene056184.t1;Parent=MS.gene056184
chr8.1 exon 65689072 65690016 65689072 ID=MS.gene056184.t1.exon1;Parent=MS.gene056184.t1
chr8.1 CDS 65689072 65690016 65689072 ID=cds.MS.gene056184.t1;Parent=MS.gene056184.t1
Gene Sequence

>MS.gene056184

ATGGCTGCTTCAACTCAATCAACCATCGCTTTGGTTACCCTAATTCTCTTCCAATACCTAACTGGTTCATATGCAACAACATTCACAATTGTTAACGAGTGCAACTACACAGTTTGGCCTGGAATTTTATCCGGCGCCGGAACAACACCGTTCTCTACAACCGGCTTTGCTCTCCAATCCGGCGAATCCAAGGCCCTTGCCGTACCCCTCAAGTGGTCAGGCCGTCTATGGGGACGTACCCTCTGCTCTCAAGATTCCACCGGAAAATTCTCTTGTGTTACCGGTGACTGTGCTTCCTCCACCATAGAGTGTGCTGGAGGAAACGCTCAACCGCCAGCTACATTAGCCGAGTTAACACTTAACGGTGCAAACGGACTAGATTTCTTCGACGTTAGTCACGTGGACGGTTATAACCTCCCAATGATGATCGAACCACATGGAGCAACCGGAGGCGGAAACTGCATGACAACAGGTTGCATGGTGGATTTGAATGCGGCGTGTCCAACCGAGTTGAAAGTGATGAGTAATGGCGGAGGTGTAGCATGTAAAAGCGCATGTGAAGCGTTCGGGGATCCACAATATTGTTGCAGTGGCGCTTACGCTTCTCCAGACACATGCAAGCCAAGTTCATACTCGCAATTTTTCAAGAATGCTTGTCCTCGTGCTTATAGCTACGCTTATGATGATGGAACAAGCACTTTTACATGTGATTCTGCTGATTATACCATCACTTTTTGTCCCACAAGTTCGATCCAATCTGGGAACGAGAAATCTCCAATGTCTGAGGAGATGGATATATCTGGGGGACATGTGAACTTCACAGCCAACAATGTTATGATTGTTGTTATTATTTCTTTTGTTTTTTGTTTTTTGTTTTTTTTTTTGAGGGATTATTTCTTTTGTTTTGATGTTGTTCTTGTGGTGAATTTGGTAGGCTATGACTAA
Protein sequence

>MS.gene056184.t1

MAASTQSTIALVTLILFQYLTGSYATTFTIVNECNYTVWPGILSGAGTTPFSTTGFALQSGESKALAVPLKWSGRLWGRTLCSQDSTGKFSCVTGDCASSTIECAGGNAQPPATLAELTLNGANGLDFFDVSHVDGYNLPMMIEPHGATGGGNCMTTGCMVDLNAACPTELKVMSNGGGVACKSACEAFGDPQYCCSGAYASPDTCKPSSYSQFFKNACPRAYSYAYDDGTSTFTCDSADYTITFCPTSSIQSGNEKSPMSEEMDISGGHVNFTANNVMIVVIISFVFCFLFFFLRDYFFCFDVVLVVNLVGYD