AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42714

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42714.t1 MTR_8g056820 79.008 262 50 1 1 262 1 257 6.68e-147 411
MS.gene42714.t1 MTR_8g037890 79.608 255 47 1 1 255 1 250 8.30e-142 400
MS.gene42714.t1 MTR_5g022310 74.517 259 57 2 1 255 1 254 1.18e-132 377
MS.gene42714.t1 MTR_5g022310 73.585 265 57 3 1 261 1 256 2.19e-132 374
MS.gene42714.t1 MTR_8g075550 65.126 238 69 3 25 255 27 257 1.97e-102 300
MS.gene42714.t1 MTR_1g025420 58.527 258 92 6 9 261 4 251 6.61e-97 285
MS.gene42714.t1 MTR_1g025420 59.449 254 90 6 9 255 4 251 8.00e-97 287
MS.gene42714.t1 MTR_3g114030 61.603 237 82 4 25 258 6 236 5.26e-96 281
MS.gene42714.t1 MTR_4g073730 56.000 250 96 4 11 252 5 248 6.78e-92 273
MS.gene42714.t1 MTR_4g073730 56.000 250 96 4 11 252 5 248 1.54e-91 273
MS.gene42714.t1 MTR_4g073720 53.878 245 97 6 9 251 9 239 8.50e-77 236
MS.gene42714.t1 MTR_5g022350 49.810 263 112 7 5 262 11 258 1.75e-75 232
MS.gene42714.t1 MTR_8g075510 50.403 248 107 7 9 255 15 247 9.19e-72 220
MS.gene42714.t1 MTR_8g075510 50.000 244 106 7 9 251 15 243 1.19e-69 217
MS.gene42714.t1 MTR_2g068030 46.862 239 116 5 20 255 17 247 7.24e-68 211
MS.gene42714.t1 MTR_1g062590 46.800 250 121 6 7 252 1 242 1.43e-66 207
MS.gene42714.t1 MTR_7g102380 45.565 248 124 6 9 254 5 243 7.53e-66 205
MS.gene42714.t1 MTR_1g021945 48.936 235 107 6 25 256 25 249 8.40e-66 205
MS.gene42714.t1 MTR_8g036215 45.122 246 125 5 7 251 1 237 9.14e-66 204
MS.gene42714.t1 MTR_3g111620 48.069 233 110 6 26 256 27 250 1.17e-63 200
MS.gene42714.t1 MTR_2g069660 45.382 249 127 4 6 252 2 243 3.71e-63 198
MS.gene42714.t1 MTR_2g067980 46.809 235 116 3 24 255 22 250 6.75e-63 213
MS.gene42714.t1 MTR_1g062350 44.664 253 127 6 4 254 3 244 1.84e-62 196
MS.gene42714.t1 MTR_1g062660 45.902 244 120 5 13 254 11 244 2.42e-62 196
MS.gene42714.t1 MTR_1g062370 43.874 253 129 6 4 254 3 244 4.79e-62 195
MS.gene42714.t1 MTR_2g068655 43.590 234 125 3 25 257 30 257 1.29e-61 196
MS.gene42714.t1 MTR_1g062340 43.825 251 128 6 6 254 5 244 9.36e-61 192
MS.gene42714.t1 MTR_6g079580 43.600 250 123 6 11 252 1 240 2.27e-60 191
MS.gene42714.t1 MTR_1g062630 44.094 254 126 6 7 254 1 244 1.05e-58 187
MS.gene42714.t1 MTR_8g107140 42.636 258 135 6 1 255 1 248 5.96e-58 185
MS.gene42714.t1 MTR_5g059200 40.664 241 128 6 11 251 14 239 1.21e-55 180
MS.gene42714.t1 MTR_5g023850 40.927 259 113 4 1 257 1 221 1.24e-52 171
MS.gene42714.t1 MTR_3g068015 41.485 229 124 5 26 252 28 248 4.27e-52 170
MS.gene42714.t1 MTR_7g062610 38.683 243 140 4 11 252 8 242 1.45e-51 169
MS.gene42714.t1 MTR_1g062690 39.526 253 116 7 4 254 3 220 5.84e-48 159
MS.gene42714.t1 MTR_6g009480 34.902 255 147 6 6 252 9 252 1.02e-44 152
MS.gene42714.t1 MTR_4g063630 36.437 247 136 9 14 251 17 251 1.63e-43 148
MS.gene42714.t1 MTR_2g067990 38.136 236 115 6 19 254 20 224 1.08e-42 155
MS.gene42714.t1 MTR_8g089020 50.769 130 59 2 115 244 32 156 2.20e-38 132
MS.gene42714.t1 MTR_2g067970 44.512 164 87 4 98 259 28 189 9.77e-38 141
MS.gene42714.t1 MTR_5g010640 33.205 259 143 8 1 252 1 236 6.99e-37 130
MS.gene42714.t1 MTR_8g096900 37.097 248 125 9 7 252 30 248 7.51e-37 130
MS.gene42714.t1 MTR_5g010635 36.797 231 119 9 23 252 21 225 8.38e-37 130
MS.gene42714.t1 MTR_5g022350 42.384 151 77 4 5 155 76 216 2.42e-27 105
MS.gene42714.t1 MTR_2g063150 30.357 224 136 8 26 244 34 242 6.10e-24 97.4
MS.gene42714.t1 MTR_7g076360 31.441 229 72 6 22 242 4 155 1.17e-22 91.7
MS.gene42714.t1 MTR_1g062390 36.478 159 89 5 99 252 87 238 2.45e-22 92.8
MS.gene42714.t1 MTR_3g081550 48.421 95 46 2 116 208 16 109 8.18e-21 85.1
MS.gene42714.t1 MTR_8g096910 34.965 143 74 7 9 146 1 129 3.04e-16 74.7
MS.gene42714.t1 MTR_8g096920 34.507 142 76 7 7 148 4 128 2.79e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42714.t1 AT4G36010 59.259 243 88 4 25 262 22 258 1.06e-93 278
MS.gene42714.t1 AT4G36010 59.259 243 88 4 25 262 22 258 1.06e-93 278
MS.gene42714.t1 AT2G17860 55.512 254 103 4 6 255 5 252 4.42e-90 267
MS.gene42714.t1 AT4G38670 58.298 235 78 5 27 252 24 247 5.33e-90 268
MS.gene42714.t1 AT4G38670 58.298 235 78 5 27 252 24 247 5.33e-90 268
MS.gene42714.t1 AT4G38670 58.298 235 78 5 27 252 8 231 8.62e-90 267
MS.gene42714.t1 AT1G75800 55.336 253 100 6 12 257 7 253 9.14e-89 266
MS.gene42714.t1 AT1G20030 56.723 238 92 4 25 257 19 250 2.47e-88 265
MS.gene42714.t1 AT1G20030 56.723 238 92 4 25 257 2 233 2.59e-88 264
MS.gene42714.t1 AT4G38660 57.255 255 94 5 8 260 12 253 4.06e-87 263
MS.gene42714.t1 AT4G38660 58.436 243 86 5 20 260 2 231 4.98e-85 257
MS.gene42714.t1 AT4G24180 51.119 268 102 7 9 262 14 266 6.19e-82 248
MS.gene42714.t1 AT4G24180 52.124 259 95 7 9 253 14 257 1.23e-81 246
MS.gene42714.t1 AT4G24180 51.685 267 101 7 9 262 10 261 1.43e-81 248
MS.gene42714.t1 AT4G24180 52.713 258 94 7 9 253 10 252 2.07e-81 245
MS.gene42714.t1 AT5G24620 45.556 270 130 6 1 262 1 261 4.38e-72 227
MS.gene42714.t1 AT5G24620 45.556 270 130 6 1 262 77 337 8.15e-72 228
MS.gene42714.t1 AT5G24620 45.556 270 130 6 1 262 56 316 9.30e-72 228
MS.gene42714.t1 AT1G75050 48.249 257 120 7 1 255 1 246 1.67e-70 217
MS.gene42714.t1 AT4G24180 49.794 243 93 7 9 237 14 241 4.52e-70 219
MS.gene42714.t1 AT4G24180 50.413 242 92 7 9 237 10 236 7.23e-70 218
MS.gene42714.t1 AT4G36000 67.949 156 42 2 107 262 1 148 2.05e-69 213
MS.gene42714.t1 AT4G36000 67.949 156 42 2 107 262 1 148 2.05e-69 213
MS.gene42714.t1 AT1G75030 47.431 253 117 8 9 255 4 246 6.10e-69 213
MS.gene42714.t1 AT1G75040 49.593 246 111 6 8 252 6 239 1.45e-68 212
MS.gene42714.t1 AT1G19320 46.964 247 115 6 12 251 9 246 4.86e-67 208
MS.gene42714.t1 AT5G38280 42.629 251 134 4 7 252 5 250 5.81e-65 214
MS.gene42714.t1 AT5G38280 42.629 251 134 4 7 252 5 250 6.38e-65 214
MS.gene42714.t1 AT1G73620 46.522 230 111 5 25 252 41 260 7.98e-62 196
MS.gene42714.t1 AT1G18250 46.552 232 112 5 23 252 19 240 1.22e-61 194
MS.gene42714.t1 AT1G18250 46.522 230 111 5 25 252 20 239 1.50e-61 194
MS.gene42714.t1 AT1G77700 42.400 250 124 8 4 251 40 271 1.40e-58 189
MS.gene42714.t1 AT1G77700 44.541 229 108 7 25 251 60 271 2.27e-58 189
MS.gene42714.t1 AT1G77700 44.541 229 108 7 25 251 88 299 4.63e-58 189
MS.gene42714.t1 AT5G02140 37.597 258 150 4 9 262 1 251 3.88e-53 174
MS.gene42714.t1 AT4G18253 41.525 236 114 5 28 257 26 243 7.04e-52 169
MS.gene42714.t1 AT5G02140 37.903 248 143 4 9 252 1 241 7.35e-52 169
MS.gene42714.t1 AT2G28790 38.153 249 142 6 7 251 8 248 1.66e-46 155
MS.gene42714.t1 AT2G28790 38.153 249 142 6 7 251 33 273 2.82e-46 156
MS.gene42714.t1 AT5G24620 56.923 130 51 1 138 262 15 144 2.54e-45 154
MS.gene42714.t1 AT5G40020 35.950 242 141 6 23 260 25 256 3.32e-44 150
MS.gene42714.t1 AT1G70250 38.462 247 130 9 25 262 144 377 9.47e-44 158
MS.gene42714.t1 AT4G18250 39.669 242 123 7 25 260 56 280 3.87e-42 152
MS.gene42714.t1 AT4G11650 37.097 248 127 8 8 255 8 226 1.90e-40 140
MS.gene42714.t1 AT2G24810 58.442 77 32 0 175 251 116 192 6.66e-27 103

Find 82 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGTTGGTCCGGCCGTCTA+TGG 0.143733 8.2:+53869987 MS.gene42714:CDS
TTAGGTATTGGAATAGAATT+AGG 0.184672 8.2:-53869800 None:intergenic
CCATAGACGGCCGGACCAAC+TGG 0.252364 8.2:-53869987 None:intergenic
CAGTTGGTCCGGCCGTCTAT+GGG 0.349245 8.2:+53869988 MS.gene42714:CDS
TCGGAAAATTCTCGTGTTAC+CGG 0.351553 8.2:+53870038 MS.gene42714:CDS
GTTTCCTCCAGCACATTCTA+TGG 0.383259 8.2:-53870078 None:intergenic
TCGGCACCGGATAAAATTCC+TGG 0.386211 8.2:-53869879 None:intergenic
CCATGTGGTTCGATCATCAT+TGG 0.396722 8.2:-53870194 None:intergenic
TTAGCCGAGTTTACACTTAA+CGG 0.398948 8.2:+53870119 MS.gene42714:CDS
CGGAAAATTCTCGTGTTACC+GGG 0.406474 8.2:+53870039 MS.gene42714:CDS
ATCGAACCACATGGAGCAAC+AGG 0.413724 8.2:+53870203 MS.gene42714:CDS
GACGGCCGGACCAACTGGGG+GGG 0.420534 8.2:-53869982 None:intergenic
TATAGTTATGCTTATGATGA+TGG 0.429307 8.2:+53870443 MS.gene42714:CDS
GTAAACTCGGCTAATGTTGC+CGG 0.432897 8.2:-53870110 None:intergenic
ACAACTGCAACTACACAGTT+TGG 0.437779 8.2:+53869856 MS.gene42714:CDS
TAGTGGCGCTTACGCTTCTC+CGG 0.438606 8.2:+53870364 MS.gene42714:CDS
CTCATCAATTTCAACTCGGT+TGG 0.442619 8.2:-53870278 None:intergenic
TAGGTATTGGAATAGAATTA+GGG 0.452636 8.2:-53869799 None:intergenic
AAGAACTGTGAGTACGAACT+TGG 0.453031 8.2:-53870398 None:intergenic
CATAGACGGCCGGACCAACT+GGG 0.454984 8.2:-53869986 None:intergenic
GAACTTGGCTTGCATGAATC+CGG 0.456825 8.2:-53870383 None:intergenic
AATAAGAACAGGTTAGGTAT+TGG 0.456972 8.2:-53869812 None:intergenic
TTCGACGTTAGTCTCGTTGA+CGG 0.460485 8.2:+53870161 MS.gene42714:CDS
AGCAAAGCCGGTGGTGGAGA+AGG 0.468541 8.2:-53869910 None:intergenic
AATCTTGAGAGCAGAGGGTT+CGG 0.477349 8.2:-53870012 None:intergenic
TTGTGGAATAAGAACAGGTT+AGG 0.477682 8.2:-53869818 None:intergenic
TAGACGGCCGGACCAACTGG+GGG 0.480004 8.2:-53869984 None:intergenic
ATAATTCAGTTCCTAGTACT+AGG 0.487729 8.2:-53870533 None:intergenic
GCCAGGTTGAAGAGCAAAGC+CGG 0.487977 8.2:-53869922 None:intergenic
GCGAGTGTGTTGGACTCGCC+AGG 0.491560 8.2:-53869939 None:intergenic
CCACATGGAGCAACAGGCAG+CGG 0.499741 8.2:+53870209 MS.gene42714:CDS
ACCGGCTTTGCTCTTCAACC+TGG 0.499965 8.2:+53869921 MS.gene42714:CDS
TCCTCAAATAACCATCACTT+TGG 0.500414 8.2:+53869773 MS.gene42714:CDS
AGACGGCCGGACCAACTGGG+GGG 0.502570 8.2:-53869983 None:intergenic
CATGTGGTTCGATCATCATT+GGG 0.503855 8.2:-53870193 None:intergenic
GAAGGGTGTCGCGTCGGCAC+CGG 0.505608 8.2:-53869892 None:intergenic
TCCTCCACCATAGAATGTGC+TGG 0.505864 8.2:+53870071 MS.gene42714:CDS
AGCGGGAACTGCATGTCCAC+AGG 0.507064 8.2:+53870227 MS.gene42714:CDS
TTGAAGAGCAAAGCCGGTGG+TGG 0.508758 8.2:-53869916 None:intergenic
GTTCGACCAATCCTAGTACT+AGG 0.510492 8.2:+53870522 MS.gene42714:CDS
ACTAGGATTGGTCGAACTTG+TGG 0.518869 8.2:-53870516 None:intergenic
AAAAGCGCATGTGAAGCGTT+TGG 0.522840 8.2:+53870323 MS.gene42714:CDS
TCAGTTCCTAGTACTAGGAT+TGG 0.526852 8.2:-53870528 None:intergenic
GAATGTTGTGGAATAAGAAC+AGG 0.530636 8.2:-53869823 None:intergenic
CTAGGATTGGTCGAACTTGT+GGG 0.534348 8.2:-53870515 None:intergenic
ACCAAAGTGATGGTTATTTG+AGG 0.541488 8.2:-53869774 None:intergenic
CACATGGAGCAACAGGCAGC+GGG 0.552487 8.2:+53870210 MS.gene42714:CDS
TCCAGCACATTCTATGGTGG+AGG 0.552747 8.2:-53870072 None:intergenic
TGCAACTACACAGTTTGGCC+AGG 0.553240 8.2:+53869861 MS.gene42714:CDS
GCAAAGCCGGTGGTGGAGAA+GGG 0.555181 8.2:-53869909 None:intergenic
ATAGACGGCCGGACCAACTG+GGG 0.560631 8.2:-53869985 None:intergenic
CGATGGAATCTTGAGAGCAG+AGG 0.562284 8.2:-53870018 None:intergenic
TGGAGGAAACGCTCAACCGC+CGG 0.566197 8.2:+53870091 MS.gene42714:CDS
AAATTGATGAGCAGCGGCAG+CGG 0.567246 8.2:+53870290 MS.gene42714:CDS
GTTAGCAATTGTGAATGTTG+TGG 0.570085 8.2:-53869835 None:intergenic
AGAGGGTTCGGCCCCATAGA+CGG 0.573672 8.2:-53870000 None:intergenic
CTCTGCTCTCAAGATTCCAT+CGG 0.575711 8.2:+53870019 MS.gene42714:CDS
GGTGGAGGAAGCACAGTCCC+CGG 0.575712 8.2:-53870057 None:intergenic
TTTACACTTAACGGCACAGG+TGG 0.578314 8.2:+53870128 MS.gene42714:CDS
GATCCACAATATTGTTGTAG+TGG 0.578378 8.2:+53870347 MS.gene42714:CDS
CCGCTGCCTGTTGCTCCATG+TGG 0.591320 8.2:-53870209 None:intergenic
GGAAAATTCTCGTGTTACCG+GGG 0.593402 8.2:+53870040 MS.gene42714:CDS
GAGTTTACACTTAACGGCAC+AGG 0.597545 8.2:+53870125 MS.gene42714:CDS
GATGGAATCTTGAGAGCAGA+GGG 0.599788 8.2:-53870017 None:intergenic
GGTGGAGAAGGGTGTCGCGT+CGG 0.602580 8.2:-53869898 None:intergenic
AATTAGGGCAACCAAAGTGA+TGG 0.602928 8.2:-53869784 None:intergenic
TGTGCCGTTAAGTGTAAACT+CGG 0.605143 8.2:-53870123 None:intergenic
AGTTGGTCCGGCCGTCTATG+GGG 0.609553 8.2:+53869989 MS.gene42714:CDS
GCGCCACTACAACAATATTG+TGG 0.613506 8.2:-53870350 None:intergenic
GGTTCGGCCCCATAGACGGC+CGG 0.614781 8.2:-53869996 None:intergenic
TCCTCCAGCACATTCTATGG+TGG 0.618375 8.2:-53870075 None:intergenic
GCGACACCCTTCTCCACCAC+CGG 0.618976 8.2:+53869903 MS.gene42714:CDS
GCTGCTCATCAATTTCAACT+CGG 0.621986 8.2:-53870282 None:intergenic
GTGGTTCGATCATCATTGGG+AGG 0.631595 8.2:-53870190 None:intergenic
AACTCGGCTAATGTTGCCGG+CGG 0.644379 8.2:-53870107 None:intergenic
CATGTCCACAGGTTGCATAG+TGG 0.650077 8.2:+53870238 MS.gene42714:CDS
CCAATGATGATCGAACCACA+TGG 0.667726 8.2:+53870194 MS.gene42714:CDS
GAGTTGAAATTGATGAGCAG+CGG 0.668672 8.2:+53870284 MS.gene42714:CDS
CAAATCCACTATGCAACCTG+TGG 0.674987 8.2:-53870243 None:intergenic
AGGTTGAAGAGCAAAGCCGG+TGG 0.678182 8.2:-53869919 None:intergenic
TCCACCATAGAATGTGCTGG+AGG 0.678229 8.2:+53870074 MS.gene42714:CDS
TAAGCATAACTATAAGCACG+TGG 0.748308 8.2:-53870434 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GGGGGGGGGGGGGGGGGGGG+GGG - chr8.2:53869966-53869985 None:intergenic 100.0%
! TATAGTTATGCTTATGATGA+TGG + chr8.2:53870443-53870462 MS.gene42714:CDS 25.0%
!!! TAGGTATTGGAATAGAATTA+GGG - chr8.2:53869802-53869821 None:intergenic 25.0%
!!! TTAGGTATTGGAATAGAATT+AGG - chr8.2:53869803-53869822 None:intergenic 25.0%
AATAAGAACAGGTTAGGTAT+TGG - chr8.2:53869815-53869834 None:intergenic 30.0%
ACCAAAGTGATGGTTATTTG+AGG - chr8.2:53869777-53869796 None:intergenic 35.0%
GAATGTTGTGGAATAAGAAC+AGG - chr8.2:53869826-53869845 None:intergenic 35.0%
GATCCACAATATTGTTGTAG+TGG + chr8.2:53870347-53870366 MS.gene42714:CDS 35.0%
GTTAGCAATTGTGAATGTTG+TGG - chr8.2:53869838-53869857 None:intergenic 35.0%
TAAGCATAACTATAAGCACG+TGG - chr8.2:53870437-53870456 None:intergenic 35.0%
TCCTCAAATAACCATCACTT+TGG + chr8.2:53869773-53869792 MS.gene42714:CDS 35.0%
TTAGCCGAGTTTACACTTAA+CGG + chr8.2:53870119-53870138 MS.gene42714:CDS 35.0%
TTGTGGAATAAGAACAGGTT+AGG - chr8.2:53869821-53869840 None:intergenic 35.0%
AAGAACTGTGAGTACGAACT+TGG - chr8.2:53870401-53870420 None:intergenic 40.0%
AATTAGGGCAACCAAAGTGA+TGG - chr8.2:53869787-53869806 None:intergenic 40.0%
ACAACTGCAACTACACAGTT+TGG + chr8.2:53869856-53869875 MS.gene42714:CDS 40.0%
ACTTGTGGGACAAAAAGTGA+TGG - chr8.2:53870504-53870523 None:intergenic 40.0%
CATGTGGTTCGATCATCATT+GGG - chr8.2:53870196-53870215 None:intergenic 40.0%
CTCATCAATTTCAACTCGGT+TGG - chr8.2:53870281-53870300 None:intergenic 40.0%
GAGTTGAAATTGATGAGCAG+CGG + chr8.2:53870284-53870303 MS.gene42714:CDS 40.0%
GCTGCTCATCAATTTCAACT+CGG - chr8.2:53870285-53870304 None:intergenic 40.0%
TCAGTTCCTAGTACTAGGAT+TGG - chr8.2:53870531-53870550 None:intergenic 40.0%
TCGGAAAATTCTCGTGTTAC+CGG + chr8.2:53870038-53870057 MS.gene42714:CDS 40.0%
! GTAACACGAGAATTTTCCGA+TGG - chr8.2:53870038-53870057 None:intergenic 40.0%
! GTTTGGCCAGGAATTTTATC+CGG + chr8.2:53869873-53869892 MS.gene42714:CDS 40.0%
! TGTGCCGTTAAGTGTAAACT+CGG - chr8.2:53870126-53870145 None:intergenic 40.0%
AATCTTGAGAGCAGAGGGTT+CGG - chr8.2:53870015-53870034 None:intergenic 45.0%
CAAATCCACTATGCAACCTG+TGG - chr8.2:53870246-53870265 None:intergenic 45.0%
CCAATGATGATCGAACCACA+TGG + chr8.2:53870194-53870213 MS.gene42714:CDS 45.0%
CCATGTGGTTCGATCATCAT+TGG - chr8.2:53870197-53870216 None:intergenic 45.0%
CGGAAAATTCTCGTGTTACC+GGG + chr8.2:53870039-53870058 MS.gene42714:CDS 45.0%
CTCTGCTCTCAAGATTCCAT+CGG + chr8.2:53870019-53870038 MS.gene42714:CDS 45.0%
GAGTTTACACTTAACGGCAC+AGG + chr8.2:53870125-53870144 MS.gene42714:CDS 45.0%
GATGGAATCTTGAGAGCAGA+GGG - chr8.2:53870020-53870039 None:intergenic 45.0%
GCGCCACTACAACAATATTG+TGG - chr8.2:53870353-53870372 None:intergenic 45.0%
GGAAAATTCTCGTGTTACCG+GGG + chr8.2:53870040-53870059 MS.gene42714:CDS 45.0%
GTAAACTCGGCTAATGTTGC+CGG - chr8.2:53870113-53870132 None:intergenic 45.0%
GTTCGACCAATCCTAGTACT+AGG + chr8.2:53870522-53870541 MS.gene42714:CDS 45.0%
GTTTCCTCCAGCACATTCTA+TGG - chr8.2:53870081-53870100 None:intergenic 45.0%
TTTACACTTAACGGCACAGG+TGG + chr8.2:53870128-53870147 MS.gene42714:CDS 45.0%
! AAAAGCGCATGTGAAGCGTT+TGG + chr8.2:53870323-53870342 MS.gene42714:CDS 45.0%
! TTCGACGTTAGTCTCGTTGA+CGG + chr8.2:53870161-53870180 MS.gene42714:CDS 45.0%
!! ACTAGGATTGGTCGAACTTG+TGG - chr8.2:53870519-53870538 None:intergenic 45.0%
!! CTAGGATTGGTCGAACTTGT+GGG - chr8.2:53870518-53870537 None:intergenic 45.0%
!! GAACTTGGCTTGCATGAATC+CGG - chr8.2:53870386-53870405 None:intergenic 45.0%
AAATTGATGAGCAGCGGCAG+CGG + chr8.2:53870290-53870309 MS.gene42714:CDS 50.0%
ATCGAACCACATGGAGCAAC+AGG + chr8.2:53870203-53870222 MS.gene42714:CDS 50.0%
CATGTCCACAGGTTGCATAG+TGG + chr8.2:53870238-53870257 MS.gene42714:CDS 50.0%
CGATGGAATCTTGAGAGCAG+AGG - chr8.2:53870021-53870040 None:intergenic 50.0%
GTGGTTCGATCATCATTGGG+AGG - chr8.2:53870193-53870212 None:intergenic 50.0%
TCCACCATAGAATGTGCTGG+AGG + chr8.2:53870074-53870093 MS.gene42714:CDS 50.0%
TCCAGCACATTCTATGGTGG+AGG - chr8.2:53870075-53870094 None:intergenic 50.0%
TCCTCCACCATAGAATGTGC+TGG + chr8.2:53870071-53870090 MS.gene42714:CDS 50.0%
TCCTCCAGCACATTCTATGG+TGG - chr8.2:53870078-53870097 None:intergenic 50.0%
TGCAACTACACAGTTTGGCC+AGG + chr8.2:53869861-53869880 MS.gene42714:CDS 50.0%
! TCGGCACCGGATAAAATTCC+TGG - chr8.2:53869882-53869901 None:intergenic 50.0%
AACTCGGCTAATGTTGCCGG+CGG - chr8.2:53870110-53870129 None:intergenic 55.0%
AGGTTGAAGAGCAAAGCCGG+TGG - chr8.2:53869922-53869941 None:intergenic 55.0%
TAGTGGCGCTTACGCTTCTC+CGG + chr8.2:53870364-53870383 MS.gene42714:CDS 55.0%
TTGAAGAGCAAAGCCGGTGG+TGG - chr8.2:53869919-53869938 None:intergenic 55.0%
! ACCGGCTTTGCTCTTCAACC+TGG + chr8.2:53869921-53869940 MS.gene42714:CDS 55.0%
! GCCAGGTTGAAGAGCAAAGC+CGG - chr8.2:53869925-53869944 None:intergenic 55.0%
AGAGGGTTCGGCCCCATAGA+CGG - chr8.2:53870003-53870022 None:intergenic 60.0%
AGCGGGAACTGCATGTCCAC+AGG + chr8.2:53870227-53870246 MS.gene42714:CDS 60.0%
AGTTGGTCCGGCCGTCTATG+GGG + chr8.2:53869989-53870008 MS.gene42714:CDS 60.0%
ATAGACGGCCGGACCAACTG+GGG - chr8.2:53869988-53870007 None:intergenic 60.0%
CACATGGAGCAACAGGCAGC+GGG + chr8.2:53870210-53870229 MS.gene42714:CDS 60.0%
CAGTTGGTCCGGCCGTCTAT+GGG + chr8.2:53869988-53870007 MS.gene42714:CDS 60.0%
CATAGACGGCCGGACCAACT+GGG - chr8.2:53869989-53870008 None:intergenic 60.0%
CCACATGGAGCAACAGGCAG+CGG + chr8.2:53870209-53870228 MS.gene42714:CDS 60.0%
TGGAGGAAACGCTCAACCGC+CGG + chr8.2:53870091-53870110 MS.gene42714:CDS 60.0%
!! AGCAAAGCCGGTGGTGGAGA+AGG - chr8.2:53869913-53869932 None:intergenic 60.0%
!! GCAAAGCCGGTGGTGGAGAA+GGG - chr8.2:53869912-53869931 None:intergenic 60.0%
CCAGTTGGTCCGGCCGTCTA+TGG + chr8.2:53869987-53870006 MS.gene42714:CDS 65.0%
CCATAGACGGCCGGACCAAC+TGG - chr8.2:53869990-53870009 None:intergenic 65.0%
CCGCTGCCTGTTGCTCCATG+TGG - chr8.2:53870212-53870231 None:intergenic 65.0%
GCGACACCCTTCTCCACCAC+CGG + chr8.2:53869903-53869922 MS.gene42714:CDS 65.0%
GCGAGTGTGTTGGACTCGCC+AGG - chr8.2:53869942-53869961 None:intergenic 65.0%
GGGGGGTAAGGCGAGTGTGT+TGG - chr8.2:53869952-53869971 None:intergenic 65.0%
TAGACGGCCGGACCAACTGG+GGG - chr8.2:53869987-53870006 None:intergenic 65.0%
! GGTGGAGGAAGCACAGTCCC+CGG - chr8.2:53870060-53870079 None:intergenic 65.0%
!! GGTGGAGAAGGGTGTCGCGT+CGG - chr8.2:53869901-53869920 None:intergenic 65.0%
AGACGGCCGGACCAACTGGG+GGG - chr8.2:53869986-53870005 None:intergenic 70.0%
GGTTCGGCCCCATAGACGGC+CGG - chr8.2:53869999-53870018 None:intergenic 70.0%
!! GAAGGGTGTCGCGTCGGCAC+CGG - chr8.2:53869895-53869914 None:intergenic 70.0%
ACGGCCGGACCAACTGGGGG+GGG - chr8.2:53869984-53870003 None:intergenic 75.0%
GACGGCCGGACCAACTGGGG+GGG - chr8.2:53869985-53870004 None:intergenic 75.0%
! ACCAACTGGGGGGGGGGGGG+GGG - chr8.2:53869976-53869995 None:intergenic 80.0%
! CCCCCCCCCCCCAGTTGGTC+CGG + chr8.2:53869977-53869996 MS.gene42714:CDS 80.0%
! CCGGACCAACTGGGGGGGGG+GGG - chr8.2:53869980-53869999 None:intergenic 80.0%
! CGGACCAACTGGGGGGGGGG+GGG - chr8.2:53869979-53869998 None:intergenic 80.0%
! CGGCCGGACCAACTGGGGGG+GGG - chr8.2:53869983-53870002 None:intergenic 80.0%
! GACCAACTGGGGGGGGGGGG+GGG - chr8.2:53869977-53869996 None:intergenic 80.0%
! GCCGGACCAACTGGGGGGGG+GGG - chr8.2:53869981-53870000 None:intergenic 80.0%
! GGACCAACTGGGGGGGGGGG+GGG - chr8.2:53869978-53869997 None:intergenic 80.0%
! GGCCGGACCAACTGGGGGGG+GGG - chr8.2:53869982-53870001 None:intergenic 80.0%
! AACTGGGGGGGGGGGGGGGG+GGG - chr8.2:53869973-53869992 None:intergenic 85.0%
! CAACTGGGGGGGGGGGGGGG+GGG - chr8.2:53869974-53869993 None:intergenic 85.0%
! CCAACTGGGGGGGGGGGGGG+GGG - chr8.2:53869975-53869994 None:intergenic 85.0%
! ACTGGGGGGGGGGGGGGGGG+GGG - chr8.2:53869972-53869991 None:intergenic 90.0%
! CCCCCCCCCCCCCCCCCAGT+TGG + chr8.2:53869972-53869991 MS.gene42714:CDS 90.0%
! GGGGGGGGGGGGGGGGGGTA+AGG - chr8.2:53869964-53869983 None:intergenic 90.0%
! CTGGGGGGGGGGGGGGGGGG+GGG - chr8.2:53869971-53869990 None:intergenic 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr8.2:53869970-53869989 None:intergenic 95.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 53869762 53870550 53869762 ID=MS.gene42714
chr8.2 mRNA 53869762 53870550 53869762 ID=MS.gene42714.t1;Parent=MS.gene42714
chr8.2 exon 53869762 53870550 53869762 ID=MS.gene42714.t1.exon1;Parent=MS.gene42714.t1
chr8.2 CDS 53869762 53870550 53869762 ID=cds.MS.gene42714.t1;Parent=MS.gene42714.t1
Gene Sequence

>MS.gene42714

ATGTCTGCTTCTCCTCAAATAACCATCACTTTGGTTGCCCTAATTCTATTCCAATACCTAACCTGTTCTTATTCCACAACATTCACAATTGCTAACAACTGCAACTACACAGTTTGGCCAGGAATTTTATCCGGTGCCGACGCGACACCCTTCTCCACCACCGGCTTTGCTCTTCAACCTGGCGAGTCCAACACACTCGCCTTACCCCCCCCCCCCCCCCCCCCCCCAGTTGGTCCGGCCGTCTATGGGGCCGAACCCTCTGCTCTCAAGATTCCATCGGAAAATTCTCGTGTTACCGGGGACTGTGCTTCCTCCACCATAGAATGTGCTGGAGGAAACGCTCAACCGCCGGCAACATTAGCCGAGTTTACACTTAACGGCACAGGTGGACTTGATTTCTTCGACGTTAGTCTCGTTGACGGTTACAACCTCCCAATGATGATCGAACCACATGGAGCAACAGGCAGCGGGAACTGCATGTCCACAGGTTGCATAGTGGATTTGAATGCTGCTTGTCCAACCGAGTTGAAATTGATGAGCAGCGGCAGCGGTGTAGCGTGTAAAAGCGCATGTGAAGCGTTTGGAGATCCACAATATTGTTGTAGTGGCGCTTACGCTTCTCCGGATTCATGCAAGCCAAGTTCGTACTCACAGTTCTTTAAGAGTGCATGTCCACGTGCTTATAGTTATGCTTATGATGATGGAACAAGCACTTTCACTTGTGCTTCTGCTGATTATACCATCACTTTTTGTCCCACAAGTTCGACCAATCCTAGTACTAGGAACTGA
Protein sequence

>MS.gene42714.t1

MSASPQITITLVALILFQYLTCSYSTTFTIANNCNYTVWPGILSGADATPFSTTGFALQPGESNTLALPPPPPPPPVGPAVYGAEPSALKIPSENSRVTGDCASSTIECAGGNAQPPATLAEFTLNGTGGLDFFDVSLVDGYNLPMMIEPHGATGSGNCMSTGCIVDLNAACPTELKLMSSGSGVACKSACEAFGDPQYCCSGAYASPDSCKPSSYSQFFKSACPRAYSYAYDDGTSTFTCASADYTITFCPTSSTNPSTRN