AlfalfaGEDB | MS.gene47873

M. sativa cultivar XinJiangDaYe / MS.gene47873

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47873.t1	XP_024628198.1	97.3	479	13	0	1	479	1	479	1.60E-270	941.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47873.t1	A5BFI4	54.6	443	201	0	33	475	35	477	1.8e-145	517.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47873.t1	A0A396GRG8	97.3	479	13	0	1	479	1	479	1.2e-270	941.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050315	MS.gene47873	0.826725	2.32E-54	-1.69E-46
MS.gene050670	MS.gene47873	0.824571	7.51E-54	-1.69E-46
MS.gene05081	MS.gene47873	0.810707	1.01E-50	-1.69E-46
MS.gene05105	MS.gene47873	0.807968	3.90E-50	-1.69E-46
MS.gene051525	MS.gene47873	0.879911	8.46E-70	-1.69E-46
MS.gene051582	MS.gene47873	0.807407	5.13E-50	-1.69E-46
MS.gene051588	MS.gene47873	0.852717	3.84E-61	-1.69E-46
MS.gene051838	MS.gene47873	0.823601	1.27E-53	-1.69E-46
MS.gene052011	MS.gene47873	-0.839185	1.84E-57	-1.69E-46
MS.gene052134	MS.gene47873	0.890184	1.24E-73	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47873.t1	MTR_8g100135	52.766	470	215	2	13	475	7	476	0.0	516
MS.gene47873.t1	MTR_8g100135	49.867	375	181	2	13	380	7	381	9.55e-130	382
MS.gene47873.t1	MTR_8g089190	38.753	449	260	8	34	474	1	442	6.31e-111	335
MS.gene47873.t1	MTR_5g092150	38.063	444	271	4	34	475	29	470	5.07e-108	329
MS.gene47873.t1	MTR_3g467140	37.632	473	282	8	11	475	9	476	1.98e-105	323
MS.gene47873.t1	MTR_5g091760	37.611	452	269	8	31	477	35	478	1.37e-104	320
MS.gene47873.t1	MTR_3g467130	36.889	450	272	6	33	475	32	476	6.04e-103	316
MS.gene47873.t1	MTR_3g467140	39.769	347	199	5	135	475	1	343	4.85e-82	258
MS.gene47873.t1	MTR_8g072260	32.917	480	297	13	1	473	1	462	1.24e-77	250
MS.gene47873.t1	MTR_8g089190	36.975	357	211	7	34	383	1	350	8.59e-76	242

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47873.t1	AT5G36110	48.322	447	223	3	33	475	33	475	9.83e-151	438
MS.gene47873.t1	AT5G36110	45.014	351	186	2	33	380	33	379	1.57e-101	309
MS.gene47873.t1	AT2G42850	35.371	458	283	8	22	475	34	482	9.57e-92	287
MS.gene47873.t1	AT5G45340	34.801	477	291	10	1	474	1	460	1.97e-90	283
MS.gene47873.t1	AT4G19230	33.689	469	286	10	13	473	8	459	1.88e-83	265
MS.gene47873.t1	AT5G45340	34.444	450	275	10	1	447	1	433	7.62e-80	255
MS.gene47873.t1	AT5G36140	41.137	299	171	2	19	316	17	311	1.40e-77	245
MS.gene47873.t1	AT4G19230	33.108	444	272	10	13	448	8	434	2.18e-74	242
MS.gene47873.t1	AT3G19270	31.263	467	307	8	6	470	6	460	1.56e-72	237
MS.gene47873.t1	AT3G50660	31.677	483	281	11	31	473	36	509	1.32e-69	231

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Find 103 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGAATGTTCAAGTA+TGG	0.410480	4.4:+12618122	MS.gene47873:CDS
AAACATACCTTCCATCCACT+AGG	0.600198	4.4:-12619800	None:intergenic
AAAGGTTTGTTACATGGATA+GGG	0.509674	4.4:-12619035	None:intergenic
AACAACTTGAAATTAGCCAA+GGG	0.643857	4.4:+12619627	MS.gene47873:CDS
AACACTTGTTCATAAACTTG+AGG	0.550446	4.4:-12619381	None:intergenic
AACAGCTTCTTCACTGAGCT+AGG	0.574513	4.4:-12618148	None:intergenic
AACATACCTTCCATCCACTA+GGG	0.616641	4.4:-12619799	None:intergenic
AAGGTTGTCTCTTGTTAATA+AGG	0.311020	4.4:+12618171	MS.gene47873:CDS
AAGTAATTTCTAAGTGTTTC+TGG	0.266492	4.4:-12618244	None:intergenic
AATAAGAACTTGTTCCCAGC+TGG	0.553588	4.4:-12618091	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAAGAACCGGTTGAAT+TGG	-	chr4.4:12618618-12618637	None:intergenic	30.0%
AACAACTTGAAATTAGCCAA+GGG	+	chr4.4:12619627-12619646	MS.gene47873:CDS	30.0%
AACACTTGTTCATAAACTTG+AGG	-	chr4.4:12619384-12619403	None:intergenic	30.0%
AAGGTTGTCTCTTGTTAATA+AGG	+	chr4.4:12618171-12618190	MS.gene47873:CDS	30.0%
AGAAAGCTTAATCTTCCTAA+AGG	+	chr4.4:12617911-12617930	MS.gene47873:CDS	30.0%
AGCATAGGTAAAATCCTTTA+TGG	-	chr4.4:12619768-12619787	None:intergenic	30.0%
ATATTGTGAAACGTTTCAAG+TGG	+	chr4.4:12620121-12620140	MS.gene47873:CDS	30.0%
CATATAAACACACATTGGAA+AGG	+	chr4.4:12618295-12618314	MS.gene47873:CDS	30.0%
CCAAATGGAACATATGAATA+AGG	-	chr4.4:12620036-12620055	None:intergenic	30.0%
CCTTATTCATATGTTCCATT+TGG	+	chr4.4:12620033-12620052	MS.gene47873:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	12617824	12620239	12617824	ID=MS.gene47873
chr4.4	mRNA	12617824	12620239	12617824	ID=MS.gene47873.t1;Parent=MS.gene47873
chr4.4	exon	12617824	12618316	12617824	ID=MS.gene47873.t1.exon1;Parent=MS.gene47873.t1
chr4.4	CDS	12617824	12618316	12617824	ID=cds.MS.gene47873.t1;Parent=MS.gene47873.t1
chr4.4	exon	12618953	12619408	12618953	ID=MS.gene47873.t1.exon2;Parent=MS.gene47873.t1
chr4.4	CDS	12618953	12619408	12618953	ID=cds.MS.gene47873.t1;Parent=MS.gene47873.t1
chr4.4	exon	12619627	12619814	12619627	ID=MS.gene47873.t1.exon3;Parent=MS.gene47873.t1
chr4.4	CDS	12619627	12619814	12619627	ID=cds.MS.gene47873.t1;Parent=MS.gene47873.t1
chr4.4	exon	12619937	12620239	12619937	ID=MS.gene47873.t1.exon4;Parent=MS.gene47873.t1
chr4.4	CDS	12619937	12620239	12619937	ID=cds.MS.gene47873.t1;Parent=MS.gene47873.t1

Gene Sequence

>MS.gene47873

ATGGAGGTGACAAAGCTCATAGTTTTACCAACAGTTTTGGCTCTCTTTGTCCTTCTTTTGCATTTCATCACAAGAATTATCAAACTCAGAAAGCTTAATCTTCCTAAAGGAACCTTAGGATTTCCATTTGTTGGAGAAACCTTTGAATTTCTAAAAGCAAATCTTGAGGGAAAGCAAATAAGGTTCATACAAGAGAGAATGAAGAAATATGACTCAAAAGTTTTCAAGACTTCAATGTTTGGAGAGAATATTGCTGTGTTTTGTGGACCAGCTGGGAACAAGTTCTTATTTAGCAATGAAAACAAGAATGTTCAAGTATGGTGGCCTAGCTCAGTGAAGAAGCTGTTAAGGTTGTCTCTTGTTAATAAGGTTGGTGATGAAGCAAAAGTAACTAGGAGGTTGCTTATGAGCTTTCTTAATCCAGAAACACTTAGAAATTACTTGCCTAATATGGATAGAATTGCTCAGCACCATATAAACACACATTGGAAAGGTAAGAAATTTTGTGATCAATCAGTTCCTATGTGTAGGACAAGGTGTTCCTTGCATTTCATTTCATGATAGTTTGTGAATTATTACTTTGTTTTTTTGATTAAATTTATGAAAATGGTCCAGTTGTTGTTGAGGAAAATTTCGACGCTCCTTTCAATCATGTTAGAGAGAGAAGCACTGTTTTATTAGCATATTATTGGCAGCAATGTTTTAAAAATCGAACTGAACCAGCCAATTCAACTCGAAATCAGCTGGTTCGCTTGTTGGTTTGATTCTGGCTATACTTTAGCCGGGTTGAACCAATTCAACCGGTTCTTATTTTTTGCAATTTTTTTTACTTACCATATGATTCTAGCATGTTTTTTAACAGATTGAACCAATTGAACCGTGACTTAAATGTCTAAACGGTTCAATCTTCGAACCATTTTTAAAGTGTTAATTAGCAGATAGTGAGATAGGTACATGACATAAAAGTTCTTACAACAGCTAGAAACTATTGTTTTTCACATTTACTCTAAAAGAAAGTCAAACTTTATTACACATTCATCGGATCGCATTTCACCATATAGATGTTTGTCAAAAATAAAAAAGAATGTTATGATCAAAGTTTAATATGTGTTAATTTACACTTTTGAAGGGAATGAGCAAGTTGTTGTCTATCCTATAATACAGCTATACACATTTGAATTAGCTTGTTGCTTATTTCTAAGCATGGAAGACCCTATCCATGTAACAAACCTTTCATCATATTTTGAAGAATTTCTAAAAGGGATCATTGGCTTCTCAATCAACTTTCCTGGAACAAGGTTTCATAAGGCAATGAAAGCTACAAATGAAATAAGGAAAGAAATTAAAATGATTATGAAGAAAAGGAAAGTGGATTTGGATGAAAAGAAGGCATCACCTACACAAGACCTTTTATCACATTTACTTGTTACACCTGATACAAGTGGAAGGTTTTTGAATGAAGTGGAGATTATTGATAACATACTATTACTTCTTTTTGCTGGCCATGACACTTCTAGATCAGTACTATCATTGGTTATGAAGTATCTTGGAAATTTGCCTCAAGTTTATGAACAAGTGTTGAAAGGTTTGAAGTAAAGTCTTTGAACATTAATTTCAATATGGTCCGACCTCAAGTCAGCTGCACTGTTTTTTCGTGCACTGCAACGTACTTGAGGTCGGAACACAAGGGAATTTGATTATATAATGAAAATTTTATAGCACCATGTTGCTTTTTTTTCTTATACTTTTATGAAAAACTTGATTAGGATAAATGTTGAAATTGTTTTTTCTTTTTTATGACAGAACAACTTGAAATTAGCCAAGGGAAAGAGGCAGGGGAGTTATTGCAATGGGAGGATATCCAGAAAATGAAATACTCTTGGAATGTTGCTTCTGAAGTTCTGAGGCTGTCCCCGCCTGTCGGTGGCGCTTTCAGAGATGCCATAAAGGATTTTACCTATGCTGATTATAACATCCCTAGTGGATGGAAGGTATGTTTCTTGTTTAACTTAATCTTATTTCAAGTATTTTTCTTTAATCTAATTCAATATATATGTATGTTGATTATTTCATATATATATTCTAAAGCATGTATATATGGTGTTTATGACAGTTGCATTGGAACACACATACAACACACATGGATCCAACACTGTTTTCAAATCCTGAAAAATTTGATGCTTCAAGGTTTGAAGGAGAAGGGCCAACACCTTATTCATATGTTCCATTTGGAGGAGGACCTAGAATGTGTTTGGGGCAAGAGTTCGCTCGGTTAGAGATACTTGTTTTTATGCATAATATTGTGAAACGTTTCAAGTGGGATTTAGTTATTCCTGATGAGAAGTTCAAGTATGATCCTATGCTAGAGCCTGAAAATGGACTTCCAATCCAACTTCAACCTTCCCATTATACATAA

Protein sequence

>MS.gene47873.t1

MEVTKLIVLPTVLALFVLLLHFITRIIKLRKLNLPKGTLGFPFVGETFEFLKANLEGKQIRFIQERMKKYDSKVFKTSMFGENIAVFCGPAGNKFLFSNENKNVQVWWPSSVKKLLRLSLVNKVGDEAKVTRRLLMSFLNPETLRNYLPNMDRIAQHHINTHWKGNEQVVVYPIIQLYTFELACCLFLSMEDPIHVTNLSSYFEEFLKGIIGFSINFPGTRFHKAMKATNEIRKEIKMIMKKRKVDLDEKKASPTQDLLSHLLVTPDTSGRFLNEVEIIDNILLLLFAGHDTSRSVLSLVMKYLGNLPQVYEQVLKEQLEISQGKEAGELLQWEDIQKMKYSWNVASEVLRLSPPVGGAFRDAIKDFTYADYNIPSGWKLHWNTHTTHMDPTLFSNPEKFDASRFEGEGPTPYSYVPFGGGPRMCLGQEFARLEILVFMHNIVKRFKWDLVIPDEKFKYDPMLEPENGLPIQLQPSHYT