Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27006.t1 | XP_003589334.1 | 98.6 | 627 | 9 | 0 | 1 | 627 | 1 | 627 | 0.00E+00 | 1226.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27006.t1 | Q9SIW1 | 63.1 | 282 | 69 | 6 | 173 | 443 | 117 | 374 | 5.6e-86 | 320.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27006.t1 | G7I5U5 | 98.6 | 627 | 9 | 0 | 1 | 627 | 1 | 627 | 0.0e+00 | 1226.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene27006.t1 | TF | HB-BELL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049452 | MS.gene27006 | 0.800386 | 1.48E-48 | -1.69E-46 |
| MS.gene049983 | MS.gene27006 | 0.826216 | 3.06E-54 | -1.69E-46 |
| MS.gene050221 | MS.gene27006 | 0.802043 | 6.76E-49 | -1.69E-46 |
| MS.gene050414 | MS.gene27006 | 0.8092 | 2.13E-50 | -1.69E-46 |
| MS.gene050633 | MS.gene27006 | 0.823718 | 1.19E-53 | -1.69E-46 |
| MS.gene050654 | MS.gene27006 | 0.812377 | 4.37E-51 | -1.69E-46 |
| MS.gene050657 | MS.gene27006 | 0.839101 | 1.94E-57 | -1.69E-46 |
| MS.gene050759 | MS.gene27006 | 0.821144 | 4.72E-53 | -1.69E-46 |
| MS.gene050826 | MS.gene27006 | 0.836733 | 7.87E-57 | -1.69E-46 |
| MS.gene050962 | MS.gene27006 | 0.812138 | 4.93E-51 | -1.69E-46 |
| MS.gene051147 | MS.gene27006 | 0.824988 | 5.99E-54 | -1.69E-46 |
| MS.gene051198 | MS.gene27006 | 0.832816 | 7.62E-56 | -1.69E-46 |
| MS.gene051279 | MS.gene27006 | 0.812435 | 4.25E-51 | -1.69E-46 |
| MS.gene051800 | MS.gene27006 | 0.867217 | 1.61E-65 | -1.69E-46 |
| MS.gene052016 | MS.gene27006 | 0.802282 | 6.04E-49 | -1.69E-46 |
| MS.gene052052 | MS.gene27006 | 0.800568 | 1.36E-48 | -1.69E-46 |
| MS.gene052333 | MS.gene27006 | 0.805658 | 1.20E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene27006 | 0.860584 | 1.87E-63 | -1.69E-46 |
| MS.gene052516 | MS.gene27006 | 0.801493 | 8.77E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene27006 | 0.862373 | 5.31E-64 | -1.69E-46 |
| MS.gene052675 | MS.gene27006 | 0.863984 | 1.68E-64 | -1.69E-46 |
| MS.gene052677 | MS.gene27006 | 0.868554 | 5.99E-66 | -1.69E-46 |
| MS.gene052775 | MS.gene27006 | 0.813709 | 2.23E-51 | -1.69E-46 |
| MS.gene053079 | MS.gene27006 | 0.826924 | 2.08E-54 | -1.69E-46 |
| MS.gene05350 | MS.gene27006 | 0.81906 | 1.42E-52 | -1.69E-46 |
| MS.gene053621 | MS.gene27006 | 0.800197 | 1.61E-48 | -1.69E-46 |
| MS.gene054236 | MS.gene27006 | 0.808836 | 2.55E-50 | -1.69E-46 |
| MS.gene05423 | MS.gene27006 | 0.804342 | 2.26E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene27006 | -0.820483 | 6.70E-53 | -1.69E-46 |
| MS.gene054467 | MS.gene27006 | 0.822444 | 2.36E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene27006 | 0.835328 | 1.79E-56 | -1.69E-46 |
| MS.gene054479 | MS.gene27006 | 0.824419 | 8.15E-54 | -1.69E-46 |
| MS.gene05458 | MS.gene27006 | 0.811104 | 8.27E-51 | -1.69E-46 |
| MS.gene054641 | MS.gene27006 | 0.838768 | 2.36E-57 | -1.69E-46 |
| MS.gene054651 | MS.gene27006 | 0.811392 | 7.16E-51 | -1.69E-46 |
| MS.gene055227 | MS.gene27006 | 0.801415 | 9.10E-49 | -1.69E-46 |
| MS.gene055327 | MS.gene27006 | 0.809821 | 1.57E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene27006 | 0.80086 | 1.18E-48 | -1.69E-46 |
| MS.gene055864 | MS.gene27006 | 0.836116 | 1.13E-56 | -1.69E-46 |
| MS.gene055926 | MS.gene27006 | 0.856073 | 4.12E-62 | -1.69E-46 |
| MS.gene056045 | MS.gene27006 | 0.80918 | 2.15E-50 | -1.69E-46 |
| MS.gene056480 | MS.gene27006 | 0.812884 | 3.39E-51 | -1.69E-46 |
| MS.gene056507 | MS.gene27006 | 0.804909 | 1.72E-49 | -1.69E-46 |
| MS.gene056779 | MS.gene27006 | 0.831733 | 1.41E-55 | -1.69E-46 |
| MS.gene05686 | MS.gene27006 | 0.805434 | 1.34E-49 | -1.69E-46 |
| MS.gene05761 | MS.gene27006 | 0.810036 | 1.41E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene27006 | 0.812684 | 3.74E-51 | -1.69E-46 |
| MS.gene058081 | MS.gene27006 | 0.831436 | 1.67E-55 | -1.69E-46 |
| MS.gene058223 | MS.gene27006 | -0.813563 | 2.40E-51 | -1.69E-46 |
| MS.gene058289 | MS.gene27006 | 0.835944 | 1.25E-56 | -1.69E-46 |
| MS.gene058429 | MS.gene27006 | 0.812951 | 3.27E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene27006 | 0.802636 | 5.11E-49 | -1.69E-46 |
| MS.gene058647 | MS.gene27006 | 0.829455 | 5.10E-55 | -1.69E-46 |
| MS.gene059438 | MS.gene27006 | 0.802282 | 6.04E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene27006 | 0.812448 | 4.22E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene27006 | 0.82296 | 1.79E-53 | -1.69E-46 |
| MS.gene060122 | MS.gene27006 | -0.882442 | 1.04E-70 | -1.69E-46 |
| MS.gene060125 | MS.gene27006 | -0.869377 | 3.24E-66 | -1.69E-46 |
| MS.gene060373 | MS.gene27006 | 0.822007 | 2.98E-53 | -1.69E-46 |
| MS.gene060380 | MS.gene27006 | 0.824096 | 9.71E-54 | -1.69E-46 |
| MS.gene060435 | MS.gene27006 | 0.809357 | 1.97E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene27006 | 0.883803 | 3.29E-71 | -1.69E-46 |
| MS.gene060777 | MS.gene27006 | 0.801996 | 6.92E-49 | -1.69E-46 |
| MS.gene060785 | MS.gene27006 | 0.807925 | 3.98E-50 | -1.69E-46 |
| MS.gene060802 | MS.gene27006 | 0.815118 | 1.09E-51 | -1.69E-46 |
| MS.gene060850 | MS.gene27006 | 0.810559 | 1.09E-50 | -1.69E-46 |
| MS.gene060851 | MS.gene27006 | 0.818587 | 1.81E-52 | -1.69E-46 |
| MS.gene060852 | MS.gene27006 | 0.81566 | 8.25E-52 | -1.69E-46 |
| MS.gene060932 | MS.gene27006 | 0.850408 | 1.73E-60 | -1.69E-46 |
| MS.gene06121 | MS.gene27006 | 0.82275 | 2.00E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27006.t1 | MTR_1g023050 | 98.565 | 627 | 9 | 0 | 1 | 627 | 1 | 627 | 0.0 | 1292 |
| MS.gene27006.t1 | MTR_3g112300 | 59.476 | 649 | 179 | 21 | 1 | 627 | 1 | 587 | 0.0 | 676 |
| MS.gene27006.t1 | MTR_3g112300 | 67.105 | 456 | 117 | 10 | 1 | 445 | 1 | 434 | 0.0 | 578 |
| MS.gene27006.t1 | MTR_3g112300 | 61.000 | 100 | 28 | 5 | 539 | 627 | 418 | 517 | 5.23e-22 | 100 |
| MS.gene27006.t1 | MTR_3g112300 | 66.425 | 414 | 106 | 10 | 1 | 403 | 1 | 392 | 5.86e-179 | 513 |
| MS.gene27006.t1 | MTR_3g112300 | 64.631 | 393 | 106 | 10 | 1 | 382 | 1 | 371 | 1.47e-162 | 470 |
| MS.gene27006.t1 | MTR_1g057790 | 58.103 | 253 | 91 | 4 | 172 | 417 | 163 | 407 | 1.00e-89 | 291 |
| MS.gene27006.t1 | MTR_7g106320 | 58.364 | 269 | 99 | 4 | 172 | 433 | 173 | 435 | 1.52e-88 | 289 |
| MS.gene27006.t1 | MTR_8g078480 | 53.285 | 274 | 106 | 4 | 173 | 434 | 391 | 654 | 2.28e-87 | 290 |
| MS.gene27006.t1 | MTR_5g018860 | 51.418 | 282 | 113 | 5 | 165 | 434 | 333 | 602 | 2.59e-86 | 285 |
| MS.gene27006.t1 | MTR_4g051532 | 57.836 | 268 | 98 | 4 | 171 | 431 | 218 | 477 | 2.24e-85 | 282 |
| MS.gene27006.t1 | MTR_8g098815 | 51.737 | 259 | 99 | 5 | 173 | 419 | 188 | 432 | 1.42e-77 | 259 |
| MS.gene27006.t1 | MTR_3g112290 | 51.408 | 284 | 93 | 8 | 173 | 435 | 168 | 427 | 8.28e-77 | 251 |
| MS.gene27006.t1 | MTR_7g065050 | 41.234 | 308 | 137 | 8 | 174 | 462 | 141 | 423 | 1.14e-60 | 211 |
| MS.gene27006.t1 | MTR_4g019450 | 44.961 | 258 | 112 | 5 | 173 | 426 | 199 | 430 | 5.50e-59 | 208 |
| MS.gene27006.t1 | MTR_2g095050 | 43.060 | 281 | 127 | 5 | 174 | 435 | 252 | 518 | 1.53e-56 | 202 |
| MS.gene27006.t1 | MTR_1g016490 | 37.548 | 261 | 144 | 5 | 172 | 425 | 245 | 493 | 8.88e-44 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27006.t1 | AT2G16400 | 62.766 | 282 | 70 | 6 | 173 | 443 | 117 | 374 | 5.83e-112 | 344 |
| MS.gene27006.t1 | AT1G19700 | 50.919 | 381 | 123 | 9 | 79 | 429 | 78 | 424 | 4.07e-109 | 339 |
| MS.gene27006.t1 | AT1G19700 | 50.919 | 381 | 123 | 9 | 79 | 429 | 78 | 424 | 4.07e-109 | 339 |
| MS.gene27006.t1 | AT1G19700 | 50.919 | 381 | 123 | 9 | 79 | 429 | 78 | 424 | 4.07e-109 | 339 |
| MS.gene27006.t1 | AT1G19700 | 50.919 | 381 | 123 | 9 | 79 | 429 | 78 | 424 | 4.07e-109 | 339 |
| MS.gene27006.t1 | AT1G19700 | 50.919 | 381 | 123 | 9 | 79 | 429 | 78 | 424 | 4.07e-109 | 339 |
| MS.gene27006.t1 | AT1G75410 | 62.132 | 272 | 72 | 5 | 171 | 430 | 168 | 420 | 4.13e-107 | 333 |
| MS.gene27006.t1 | AT1G75410 | 62.132 | 272 | 72 | 5 | 171 | 430 | 168 | 420 | 4.13e-107 | 333 |
| MS.gene27006.t1 | AT4G34610 | 56.000 | 325 | 105 | 6 | 173 | 482 | 143 | 444 | 1.04e-106 | 332 |
| MS.gene27006.t1 | AT4G34610 | 56.000 | 325 | 105 | 6 | 173 | 482 | 143 | 444 | 1.04e-106 | 332 |
| MS.gene27006.t1 | AT4G34610 | 56.000 | 325 | 105 | 6 | 173 | 482 | 143 | 444 | 1.04e-106 | 332 |
| MS.gene27006.t1 | AT4G34610 | 56.000 | 325 | 105 | 6 | 173 | 482 | 143 | 444 | 1.04e-106 | 332 |
| MS.gene27006.t1 | AT1G75410 | 58.300 | 247 | 72 | 5 | 169 | 403 | 166 | 393 | 1.88e-85 | 273 |
| MS.gene27006.t1 | AT2G23760 | 52.075 | 265 | 102 | 4 | 173 | 424 | 240 | 492 | 1.10e-81 | 270 |
| MS.gene27006.t1 | AT2G23760 | 52.075 | 265 | 102 | 4 | 173 | 424 | 240 | 492 | 1.10e-81 | 270 |
| MS.gene27006.t1 | AT2G23760 | 52.075 | 265 | 102 | 4 | 173 | 424 | 240 | 492 | 1.10e-81 | 270 |
| MS.gene27006.t1 | AT4G36870 | 52.809 | 267 | 98 | 5 | 173 | 425 | 315 | 567 | 2.29e-81 | 272 |
| MS.gene27006.t1 | AT4G36870 | 52.809 | 267 | 98 | 5 | 173 | 425 | 315 | 567 | 2.29e-81 | 272 |
| MS.gene27006.t1 | AT2G35940 | 54.789 | 261 | 102 | 4 | 170 | 417 | 189 | 446 | 1.42e-80 | 268 |
| MS.gene27006.t1 | AT2G35940 | 54.789 | 261 | 102 | 4 | 170 | 417 | 189 | 446 | 1.42e-80 | 268 |
| MS.gene27006.t1 | AT2G35940 | 54.789 | 261 | 102 | 4 | 170 | 417 | 189 | 446 | 1.42e-80 | 268 |
| MS.gene27006.t1 | AT2G23760 | 43.533 | 317 | 102 | 5 | 173 | 424 | 240 | 544 | 1.28e-71 | 244 |
| MS.gene27006.t1 | AT5G41410 | 48.000 | 275 | 113 | 5 | 173 | 426 | 196 | 461 | 6.64e-69 | 235 |
| MS.gene27006.t1 | AT2G27220 | 45.489 | 266 | 103 | 6 | 171 | 432 | 77 | 304 | 3.58e-67 | 226 |
| MS.gene27006.t1 | AT2G27220 | 45.489 | 266 | 103 | 6 | 171 | 432 | 77 | 304 | 3.58e-67 | 226 |
| MS.gene27006.t1 | AT4G36870 | 49.593 | 246 | 96 | 5 | 173 | 404 | 315 | 546 | 3.05e-65 | 224 |
| MS.gene27006.t1 | AT4G36870 | 49.590 | 244 | 95 | 5 | 173 | 402 | 315 | 544 | 3.02e-64 | 221 |
| MS.gene27006.t1 | AT1G75430 | 42.125 | 273 | 130 | 7 | 172 | 430 | 18 | 276 | 3.18e-64 | 213 |
| MS.gene27006.t1 | AT2G27220 | 43.066 | 274 | 116 | 6 | 171 | 432 | 77 | 322 | 5.51e-64 | 218 |
| MS.gene27006.t1 | AT5G02030 | 43.123 | 269 | 113 | 6 | 174 | 426 | 174 | 418 | 2.95e-56 | 200 |
| MS.gene27006.t1 | AT2G27990 | 45.992 | 237 | 112 | 5 | 216 | 445 | 289 | 516 | 6.02e-54 | 194 |
| MS.gene27006.t1 | AT4G32980 | 39.526 | 253 | 136 | 6 | 174 | 425 | 205 | 441 | 2.06e-43 | 162 |
| MS.gene27006.t1 | AT4G32980 | 39.526 | 253 | 136 | 6 | 174 | 425 | 205 | 441 | 2.06e-43 | 162 |
| MS.gene27006.t1 | AT1G75430 | 34.667 | 225 | 119 | 7 | 172 | 382 | 18 | 228 | 2.35e-31 | 124 |
| MS.gene27006.t1 | AT2G27990 | 40.936 | 171 | 88 | 4 | 216 | 382 | 289 | 450 | 4.73e-27 | 115 |
Find 148 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATAATTGTACCTGGTTTC+TGG | 0.152099 | 1.3:-2285842 | None:intergenic |
| TCCTTTGAGTCAATTGAATT+TGG | 0.219438 | 1.3:-2285491 | None:intergenic |
| TTCGAGTGTGGGATGATAAA+AGG | 0.235165 | 1.3:+2286248 | MS.gene27006:CDS |
| TTATGCAGCCATCACCATTT+TGG | 0.238602 | 1.3:-2286501 | None:intergenic |
| TGCATGGCATCTTTGTCTTC+TGG | 0.248717 | 1.3:+2284331 | MS.gene27006:CDS |
| TGCGGAACGACAGCATTTAT+TGG | 0.269167 | 1.3:+2284693 | MS.gene27006:CDS |
| GAGATAGGTGGATTTGAATA+AGG | 0.271180 | 1.3:-2286472 | None:intergenic |
| TCTTACGCGGAGATGATATC+TGG | 0.303124 | 1.3:+2283989 | MS.gene27006:CDS |
| TTAATGCGAGGGTGCGTCTT+TGG | 0.310569 | 1.3:+2286122 | MS.gene27006:CDS |
| CCAATGATGACATCAATAAA+AGG | 0.314376 | 1.3:+2286641 | MS.gene27006:CDS |
| GATCAGATTGCCCTTCATTA+AGG | 0.326393 | 1.3:-2284411 | None:intergenic |
| CGGTTTGTTTCAAGCCCTTT+CGG | 0.335842 | 1.3:-2284528 | None:intergenic |
| AGTATTGACACAGAGCTTTC+AGG | 0.345023 | 1.3:-2285633 | None:intergenic |
| CCTATCTCAATCAACCAAAA+TGG | 0.345586 | 1.3:+2286487 | MS.gene27006:CDS |
| AATGTGATGGATTCTAGAAT+TGG | 0.353123 | 1.3:+2286406 | MS.gene27006:CDS |
| AACTCTGAAAGTGATGGATT+TGG | 0.353605 | 1.3:+2286613 | MS.gene27006:CDS |
| GAATAACTGCTGATCCTTGC+AGG | 0.353930 | 1.3:-2284438 | None:intergenic |
| GAATATGCTGTCTATTGATC+AGG | 0.361084 | 1.3:+2284096 | MS.gene27006:CDS |
| TGTTCATGTTAAACCTTTGT+TGG | 0.369527 | 1.3:-2286444 | None:intergenic |
| TCATCGTCTCTCAGAGCTTT+CGG | 0.386352 | 1.3:-2286223 | None:intergenic |
| GTTGAAGTTTATGACATCTA+TGG | 0.390672 | 1.3:+2284063 | MS.gene27006:CDS |
| GATAAATCATCATAAGTTGT+AGG | 0.393638 | 1.3:-2286535 | None:intergenic |
| TTGTTTGCATTAGAACCATT+AGG | 0.396087 | 1.3:-2284649 | None:intergenic |
| CAAGTATCTTCAGGCCCTAA+TGG | 0.396669 | 1.3:+2284634 | MS.gene27006:CDS |
| CAAAGAAGAGTTTGGTGATT+CGG | 0.398248 | 1.3:+2286168 | MS.gene27006:CDS |
| AGGGCCTGTCTCTTAGCCTT+GGG | 0.402513 | 1.3:+2284194 | MS.gene27006:CDS |
| TATAATCCACATCCTTCAAT+AGG | 0.405384 | 1.3:+2284388 | MS.gene27006:CDS |
| TCAAAGGAGCCTTGGAGAAC+AGG | 0.407571 | 1.3:+2285506 | MS.gene27006:CDS |
| TGTTTGCATTAGAACCATTA+GGG | 0.408633 | 1.3:-2284648 | None:intergenic |
| CAGGGCCTGTCTCTTAGCCT+TGG | 0.411685 | 1.3:+2284193 | MS.gene27006:CDS |
| ATTCATATCAGGTGGCGAAT+TGG | 0.412122 | 1.3:+2286095 | MS.gene27006:intron |
| GAACAACAAGGTCAAATTGC+AGG | 0.412751 | 1.3:+2286310 | MS.gene27006:CDS |
| CCCGAAGAAAACGCTTGGTT+CGG | 0.414480 | 1.3:-2283965 | None:intergenic |
| GGAAAGCAACAACACAAGTT+TGG | 0.415587 | 1.3:+2286727 | MS.gene27006:CDS |
| CCTTAACTCTCATTACCTTA+AGG | 0.423186 | 1.3:+2284471 | MS.gene27006:CDS |
| GAAGGGGTCTGCATCTCTTA+AGG | 0.423750 | 1.3:+2284294 | MS.gene27006:CDS |
| ATCCTCCTCAACCACAGAAT+TGG | 0.427692 | 1.3:+2286351 | MS.gene27006:CDS |
| ATCATGTTGGCAAGACAAAC+AGG | 0.427985 | 1.3:+2285814 | MS.gene27006:CDS |
| TTATCAGAGTTGAATAACTT+TGG | 0.446808 | 1.3:+2286553 | MS.gene27006:CDS |
| ACAGCGAAAGTGACGGGAAA+TGG | 0.449081 | 1.3:-2285448 | None:intergenic |
| TGCGCAAATCTCAAACTTGA+AGG | 0.449976 | 1.3:+2284276 | MS.gene27006:CDS |
| TAGTCTAACAAATCAGTATC+TGG | 0.450445 | 1.3:-2286688 | None:intergenic |
| ACGAGTCCGAACTGTGTCCT+TGG | 0.450686 | 1.3:-2284145 | None:intergenic |
| CTTAAGGTAATGAGAGTTAA+GGG | 0.452147 | 1.3:-2284470 | None:intergenic |
| GCATTTGATGACAGTATTGT+CGG | 0.454790 | 1.3:-2285350 | None:intergenic |
| CCTTAAGGTAATGAGAGTTA+AGG | 0.455316 | 1.3:-2284471 | None:intergenic |
| TAGCGAGGTGAAACTGTTGC+CGG | 0.455506 | 1.3:-2284248 | None:intergenic |
| AAATGGTGATGGCTGCATAA+TGG | 0.456126 | 1.3:+2286504 | MS.gene27006:CDS |
| GAAGTTCCTGTGCTGCCTTA+AGG | 0.456385 | 1.3:-2284486 | None:intergenic |
| TCTATCCAATTCTGTGGTTG+AGG | 0.458494 | 1.3:-2286356 | None:intergenic |
| CGAGCAAAACGTACAATGCC+AGG | 0.460386 | 1.3:+2284174 | MS.gene27006:CDS |
| TTGTACATTTCTTCGACCAT+TGG | 0.464693 | 1.3:-2286148 | None:intergenic |
| TTTGACATGGTTGCTGGTTG+CGG | 0.469668 | 1.3:+2285390 | MS.gene27006:CDS |
| GACTATCACTTCACAGACTC+TGG | 0.470328 | 1.3:+2286706 | MS.gene27006:CDS |
| GATTTCAAAACAATGTCAAA+AGG | 0.470576 | 1.3:+2284356 | MS.gene27006:CDS |
| TTAAGGCCTATTGAAGGATG+TGG | 0.474446 | 1.3:-2284394 | None:intergenic |
| CCTTCATTAAGGCCTATTGA+AGG | 0.476704 | 1.3:-2284400 | None:intergenic |
| ATGTGATGGATTCTAGAATT+GGG | 0.476805 | 1.3:+2286407 | MS.gene27006:CDS |
| CGAAAGGGCTTGAAACAAAC+CGG | 0.477844 | 1.3:+2284529 | MS.gene27006:CDS |
| TCGAGTGTGGGATGATAAAA+GGG | 0.478699 | 1.3:+2286249 | MS.gene27006:CDS |
| GAAATGTACAAAGAAGAGTT+TGG | 0.481440 | 1.3:+2286160 | MS.gene27006:CDS |
| GGATTCAAAGTAGTGATCAT+TGG | 0.484660 | 1.3:+2286380 | MS.gene27006:CDS |
| CAATCTATGCAAGTATCTTC+AGG | 0.487753 | 1.3:+2284625 | MS.gene27006:CDS |
| TTGAATAACTTTGGTGTTGG+TGG | 0.488559 | 1.3:+2286562 | MS.gene27006:CDS |
| CCTTCAATAGGCCTTAATGA+AGG | 0.490236 | 1.3:+2284400 | MS.gene27006:CDS |
| CAATTGACTCAAAGGAGCCT+TGG | 0.496196 | 1.3:+2285498 | MS.gene27006:CDS |
| GACAAGTTAATGAATGTTGA+TGG | 0.500544 | 1.3:+2286283 | MS.gene27006:CDS |
| ACGCAAACAGCGAAAGTGAC+GGG | 0.500857 | 1.3:-2285454 | None:intergenic |
| ACAGATTCACTGTAATTATG+AGG | 0.502023 | 1.3:-2284025 | None:intergenic |
| TCCTTTCAATATCAGTATCC+CGG | 0.503550 | 1.3:+2284229 | MS.gene27006:CDS |
| TCAACCACAGAATTGGATAG+AGG | 0.504097 | 1.3:+2286358 | MS.gene27006:CDS |
| AGCAAGAGCAGTGTATGGTT+CGG | 0.505239 | 1.3:-2285418 | None:intergenic |
| TGAGAGTTAAGGGCATTGTT+CGG | 0.506066 | 1.3:-2284460 | None:intergenic |
| GCCAAATTCAATTGACTCAA+AGG | 0.508585 | 1.3:+2285490 | MS.gene27006:CDS |
| GATGCTTCCAAAGATTCTGA+TGG | 0.513635 | 1.3:+2284589 | MS.gene27006:CDS |
| CGCAAAGCAAGAGCAGTGTA+TGG | 0.513848 | 1.3:-2285423 | None:intergenic |
| GAAATAGTTAATGTCCGAAA+GGG | 0.516547 | 1.3:+2284514 | MS.gene27006:CDS |
| CAAGGCTAAGAGACAGGCCC+TGG | 0.521258 | 1.3:-2284192 | None:intergenic |
| ACAAACTCGTGCAACAAATG+TGG | 0.529085 | 1.3:-2286754 | None:intergenic |
| TTGTCCCAAGGCTAAGAGAC+AGG | 0.530080 | 1.3:-2284198 | None:intergenic |
| TGGATCGCTCGTACTAGCAT+TGG | 0.530376 | 1.3:-2284125 | None:intergenic |
| AATAAATGCTGTCGTTCCGC+AGG | 0.530460 | 1.3:-2284691 | None:intergenic |
| GGGCTTGAAACAAACCGGAT+TGG | 0.530868 | 1.3:+2284534 | MS.gene27006:CDS |
| AATCCCTCTATCCAATTCTG+TGG | 0.532847 | 1.3:-2286362 | None:intergenic |
| AACAGGCTTGACCAGAAACC+AGG | 0.533633 | 1.3:+2285831 | MS.gene27006:CDS |
| CGCAAATCTCAAACTTGAAG+GGG | 0.537507 | 1.3:+2284278 | MS.gene27006:CDS |
| TGTTTGCGTGATGCTATTAG+CGG | 0.542554 | 1.3:+2285468 | MS.gene27006:CDS |
| ATAGGGGAACCTACGGATGA+AGG | 0.542920 | 1.3:-2285680 | None:intergenic |
| TTTCACTTGCATTAGAGTTG+AGG | 0.543423 | 1.3:+2286590 | MS.gene27006:CDS |
| ATGGCATCTTTGTCTTCTGG+AGG | 0.543573 | 1.3:+2284334 | MS.gene27006:CDS |
| ATTTCAAAACAATGTCAAAA+GGG | 0.546039 | 1.3:+2284357 | MS.gene27006:CDS |
| AGCGATCCAAGGACACAGTT+CGG | 0.549071 | 1.3:+2284139 | MS.gene27006:CDS |
| AATATGCTGTCTATTGATCA+GGG | 0.561372 | 1.3:+2284097 | MS.gene27006:CDS |
| TCATTACCTTAAGGCAGCAC+AGG | 0.563750 | 1.3:+2284480 | MS.gene27006:CDS |
| AGCGAGGTGAAACTGTTGCC+GGG | 0.566022 | 1.3:-2284247 | None:intergenic |
| TTGAGGAACTCTGAAAGTGA+TGG | 0.567032 | 1.3:+2286607 | MS.gene27006:CDS |
| GCGCAAATCTCAAACTTGAA+GGG | 0.567269 | 1.3:+2284277 | MS.gene27006:CDS |
| CTTCAATAGGCCTTAATGAA+GGG | 0.568757 | 1.3:+2284401 | MS.gene27006:CDS |
| ATCCAATTCTGTGGTTGAGG+AGG | 0.571241 | 1.3:-2286353 | None:intergenic |
| CTGTGTCAATACTCCGTGCA+TGG | 0.572034 | 1.3:+2285643 | MS.gene27006:CDS |
| ATTTGGTATTAGTTATCCGA+AGG | 0.572160 | 1.3:+2285780 | MS.gene27006:intron |
| TCAATCAACCAAAATGGTGA+TGG | 0.572460 | 1.3:+2286493 | MS.gene27006:CDS |
| CAAAACAATGTCAAAAGGGA+GGG | 0.573643 | 1.3:+2284361 | MS.gene27006:CDS |
| ACTGCTGATCCTTGCAGGCA+CGG | 0.574395 | 1.3:-2284433 | None:intergenic |
| CAAACTCGTGCAACAAATGT+GGG | 0.576826 | 1.3:-2286753 | None:intergenic |
| AAGATCCCGAAGAAAACGCT+TGG | 0.576848 | 1.3:-2283970 | None:intergenic |
| CGAATTGGTTTATTAATGCG+AGG | 0.577323 | 1.3:+2286110 | MS.gene27006:CDS |
| TGAAATAGTTAATGTCCGAA+AGG | 0.577336 | 1.3:+2284513 | MS.gene27006:CDS |
| CTTACGCGGAGATGATATCT+GGG | 0.578743 | 1.3:+2283990 | MS.gene27006:CDS |
| AAATGCAAGGTGACCAACAA+AGG | 0.584563 | 1.3:+2286431 | MS.gene27006:CDS |
| GGATACTGATATTGAAAGGA+AGG | 0.586079 | 1.3:-2284226 | None:intergenic |
| TCTAGAATTGGGAAAATGCA+AGG | 0.587723 | 1.3:+2286418 | MS.gene27006:CDS |
| GTATTCCCTCCTGTTCTCCA+AGG | 0.589107 | 1.3:-2285515 | None:intergenic |
| CAACCACAGAATTGGATAGA+GGG | 0.589884 | 1.3:+2286359 | MS.gene27006:CDS |
| TGCATCTCTTAAGGATGATG+AGG | 0.590655 | 1.3:+2284303 | MS.gene27006:CDS |
| ATGCTAGTACGAGCGATCCA+AGG | 0.594612 | 1.3:+2284128 | MS.gene27006:CDS |
| CATAATTACAGTGAATCTGT+AGG | 0.596692 | 1.3:+2284028 | MS.gene27006:CDS |
| CAATCTGATCCGTGCCTGCA+AGG | 0.597181 | 1.3:+2284424 | MS.gene27006:CDS |
| ACTCTAATGCAAGTGAAACA+TGG | 0.600932 | 1.3:-2286585 | None:intergenic |
| GCCGGGATACTGATATTGAA+AGG | 0.601547 | 1.3:-2284230 | None:intergenic |
| AAGGAGCCTTGGAGAACAGG+AGG | 0.601817 | 1.3:+2285509 | MS.gene27006:CDS |
| AACAACAAGGTCAAATTGCA+GGG | 0.603207 | 1.3:+2286311 | MS.gene27006:CDS |
| CACGCAAACAGCGAAAGTGA+CGG | 0.607447 | 1.3:-2285455 | None:intergenic |
| TCAAAACAATGTCAAAAGGG+AGG | 0.609941 | 1.3:+2284360 | MS.gene27006:CDS |
| TGATCATTGGACAAATGTGA+TGG | 0.613913 | 1.3:+2286393 | MS.gene27006:CDS |
| GAGTTGAATAACTTTGGTGT+TGG | 0.616287 | 1.3:+2286559 | MS.gene27006:CDS |
| GAATTGGTTTATTAATGCGA+GGG | 0.617226 | 1.3:+2286111 | MS.gene27006:CDS |
| GGATGATGAGGCTGAGTGCA+TGG | 0.618918 | 1.3:+2284315 | MS.gene27006:CDS |
| GGTGCGTCTTTGGAAACCAA+TGG | 0.625023 | 1.3:+2286132 | MS.gene27006:CDS |
| GGATTCAGAGAAAATCATGT+TGG | 0.625560 | 1.3:+2285801 | MS.gene27006:CDS |
| AATTACAGTGAATCTGTAGG+AGG | 0.626592 | 1.3:+2284031 | MS.gene27006:CDS |
| TAAAAGGCGTAATCAAACAA+TGG | 0.626825 | 1.3:+2286657 | MS.gene27006:CDS |
| GATTTGCGCATTCATTAGCG+AGG | 0.633287 | 1.3:-2284263 | None:intergenic |
| AGACGATGATGTTCGAGTGT+GGG | 0.634657 | 1.3:+2286237 | MS.gene27006:CDS |
| AAGGTTTACCTCATCCAACA+TGG | 0.638250 | 1.3:-2284737 | None:intergenic |
| TTCATGTGAGCTATCGCCTG+CGG | 0.643410 | 1.3:+2284675 | MS.gene27006:CDS |
| GAGACGATGATGTTCGAGTG+TGG | 0.650382 | 1.3:+2286236 | MS.gene27006:CDS |
| AGGAAGGCATCATTGTCCCA+AGG | 0.659671 | 1.3:-2284210 | None:intergenic |
| TGATCGACATAGCGGAGACG+AGG | 0.663796 | 1.3:-2285537 | None:intergenic |
| AGGAGCCTTGGAGAACAGGA+GGG | 0.665826 | 1.3:+2285510 | MS.gene27006:CDS |
| AATGCTCGAAGAGCCATGCA+CGG | 0.666429 | 1.3:-2285656 | None:intergenic |
| GAGCAAAACGTACAATGCCA+GGG | 0.666769 | 1.3:+2284175 | MS.gene27006:CDS |
| TTGGTGTAATGAGACAAGCT+TGG | 0.669718 | 1.3:+2285592 | MS.gene27006:CDS |
| CAAGCTTGGAGACCTCAGAG+AGG | 0.678920 | 1.3:+2285606 | MS.gene27006:CDS |
| ATATGCTGTCTATTGATCAG+GGG | 0.700074 | 1.3:+2284098 | MS.gene27006:CDS |
| GTTGATGGTGCTGAACAACA+AGG | 0.707575 | 1.3:+2286298 | MS.gene27006:CDS |
| TAAGCTGCTGATCGACATAG+CGG | 0.719259 | 1.3:-2285545 | None:intergenic |
| CTTTCAGGAAGTCCTCTCTG+AGG | 0.726595 | 1.3:-2285618 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGTTTTAAATTTCATT+TGG | + | chr1.3:2285763-2285782 | MS.gene27006:intron | 10.0% |
| !! | AATGAAAAAAAAATGAGTAT+AGG | - | chr1.3:2285701-2285720 | None:intergenic | 15.0% |
| !! | AATGTAAAATGATTTATGTT+TGG | - | chr1.3:2285975-2285994 | None:intergenic | 15.0% |
| !! | ATGAAAAAAAAATGAGTATA+GGG | - | chr1.3:2285700-2285719 | None:intergenic | 15.0% |
| !!! | ACTCATTTTTTTTTCATTAA+TGG | + | chr1.3:2285703-2285722 | MS.gene27006:intron | 15.0% |
| !!! | ATTTATATGTTTTATACGTA+TGG | - | chr1.3:2284792-2284811 | None:intergenic | 15.0% |
| !! | ATCACTATTTAATTCATATC+AGG | + | chr1.3:2286084-2286103 | MS.gene27006:intron | 20.0% |
| !! | ATTTCAAAACAATGTCAAAA+GGG | + | chr1.3:2284357-2284376 | MS.gene27006:CDS | 20.0% |
| !! | TGAAAAAAAAATGAGTATAG+GGG | - | chr1.3:2285699-2285718 | None:intergenic | 20.0% |
| ! | AAAACATTCATAATTGTACC+TGG | - | chr1.3:2285852-2285871 | None:intergenic | 25.0% |
| ! | AAACCTTTACACTGTATTAT+TGG | + | chr1.3:2284753-2284772 | MS.gene27006:intron | 25.0% |
| ! | AACCTCAAATTAATTGTTAG+TGG | + | chr1.3:2285267-2285286 | MS.gene27006:intron | 25.0% |
| ! | AATCCAATAATACAGTGTAA+AGG | - | chr1.3:2284759-2284778 | None:intergenic | 25.0% |
| ! | ACTATTTAATTCATATCAGG+TGG | + | chr1.3:2286087-2286106 | MS.gene27006:intron | 25.0% |
| ! | ATATTACAATAGTGTGTGAA+TGG | + | chr1.3:2285056-2285075 | MS.gene27006:intron | 25.0% |
| ! | CTACAAGTTATAATCAATTC+TGG | - | chr1.3:2285210-2285229 | None:intergenic | 25.0% |
| ! | CTTAACAACTTTAAGCTTAT+GGG | + | chr1.3:2284824-2284843 | MS.gene27006:intron | 25.0% |
| ! | GATAAATCATCATAAGTTGT+AGG | - | chr1.3:2286538-2286557 | None:intergenic | 25.0% |
| ! | GATTTCAAAACAATGTCAAA+AGG | + | chr1.3:2284356-2284375 | MS.gene27006:CDS | 25.0% |
| ! | GTAATCAGAAGTTTAGTAAA+TGG | - | chr1.3:2284913-2284932 | None:intergenic | 25.0% |
| ! | TATTCTGATTAAGATCCAAA+GGG | + | chr1.3:2285895-2285914 | MS.gene27006:intron | 25.0% |
| ! | TTATCAGAGTTGAATAACTT+TGG | + | chr1.3:2286553-2286572 | MS.gene27006:CDS | 25.0% |
| ! | TTGAGGTTAAAAGTCAATTA+TGG | - | chr1.3:2285255-2285274 | None:intergenic | 25.0% |
| !!! | ACAGTTGATTTTAACACATT+TGG | + | chr1.3:2285157-2285176 | MS.gene27006:intron | 25.0% |
| AATATGCTGTCTATTGATCA+GGG | + | chr1.3:2284097-2284116 | MS.gene27006:CDS | 30.0% | |
| ACAGATTCACTGTAATTATG+AGG | - | chr1.3:2284028-2284047 | None:intergenic | 30.0% | |
| ACGATTCAACCAAATAGAAA+GGG | - | chr1.3:2285014-2285033 | None:intergenic | 30.0% | |
| AGGTTAAAAGTCAATTATGG+AGG | - | chr1.3:2285252-2285271 | None:intergenic | 30.0% | |
| ATTTATCTTACCTTTGCATG+AGG | + | chr1.3:2285113-2285132 | MS.gene27006:intron | 30.0% | |
| ATTTGGTATTAGTTATCCGA+AGG | + | chr1.3:2285780-2285799 | MS.gene27006:intron | 30.0% | |
| CAAGTTATAATCAATTCTGG+AGG | - | chr1.3:2285207-2285226 | None:intergenic | 30.0% | |
| CACTGTATTATTGGATTACA+AGG | + | chr1.3:2284762-2284781 | MS.gene27006:intron | 30.0% | |
| CATAATTACAGTGAATCTGT+AGG | + | chr1.3:2284028-2284047 | MS.gene27006:CDS | 30.0% | |
| CCAATGATGACATCAATAAA+AGG | + | chr1.3:2286641-2286660 | MS.gene27006:CDS | 30.0% | |
| CTTAAGGTAATGAGAGTTAA+GGG | - | chr1.3:2284473-2284492 | None:intergenic | 30.0% | |
| GAAATAGTTAATGTCCGAAA+GGG | + | chr1.3:2284514-2284533 | MS.gene27006:CDS | 30.0% | |
| GAAATGTACAAAGAAGAGTT+TGG | + | chr1.3:2286160-2286179 | MS.gene27006:CDS | 30.0% | |
| GACAAGTTAATGAATGTTGA+TGG | + | chr1.3:2286283-2286302 | MS.gene27006:CDS | 30.0% | |
| GCTTAACAACTTTAAGCTTA+TGG | + | chr1.3:2284823-2284842 | MS.gene27006:intron | 30.0% | |
| GTATTCTGATTAAGATCCAA+AGG | + | chr1.3:2285894-2285913 | MS.gene27006:intron | 30.0% | |
| GTTGAAGTTTATGACATCTA+TGG | + | chr1.3:2284063-2284082 | MS.gene27006:CDS | 30.0% | |
| TAACATACACTTTAAGTGTC+AGG | - | chr1.3:2285929-2285948 | None:intergenic | 30.0% | |
| TAGTATGTAACAAACGATTG+AGG | + | chr1.3:2284973-2284992 | MS.gene27006:intron | 30.0% | |
| TAGTCTAACAAATCAGTATC+TGG | - | chr1.3:2286691-2286710 | None:intergenic | 30.0% | |
| TATAATCCACATCCTTCAAT+AGG | + | chr1.3:2284388-2284407 | MS.gene27006:CDS | 30.0% | |
| TCCTTTGAGTCAATTGAATT+TGG | - | chr1.3:2285494-2285513 | None:intergenic | 30.0% | |
| TGAAATAGTTAATGTCCGAA+AGG | + | chr1.3:2284513-2284532 | MS.gene27006:CDS | 30.0% | |
| TGTTCATGTTAAACCTTTGT+TGG | - | chr1.3:2286447-2286466 | None:intergenic | 30.0% | |
| TGTTTGCATTAGAACCATTA+GGG | - | chr1.3:2284651-2284670 | None:intergenic | 30.0% | |
| TTGTTTGCATTAGAACCATT+AGG | - | chr1.3:2284652-2284671 | None:intergenic | 30.0% | |
| ! | AACAAAACTTTTGTCCATGT+TGG | + | chr1.3:2284723-2284742 | MS.gene27006:CDS | 30.0% |
| ! | AGATTTTCCATCAGAATCTT+TGG | - | chr1.3:2284599-2284618 | None:intergenic | 30.0% |
| ! | ATCAATTTTACCTCATGCAA+AGG | - | chr1.3:2285126-2285145 | None:intergenic | 30.0% |
| ! | ATGATTTTCTCTGAATCCTT+CGG | - | chr1.3:2285799-2285818 | None:intergenic | 30.0% |
| ! | CACCACTAACAATTAATTTG+AGG | - | chr1.3:2285272-2285291 | None:intergenic | 30.0% |
| ! | CCTTTTATTGATGTCATCAT+TGG | - | chr1.3:2286644-2286663 | None:intergenic | 30.0% |
| ! | GAATTGGTTTATTAATGCGA+GGG | + | chr1.3:2286111-2286130 | MS.gene27006:CDS | 30.0% |
| ! | TAAAAGGCGTAATCAAACAA+TGG | + | chr1.3:2286657-2286676 | MS.gene27006:CDS | 30.0% |
| ! | TAAGTCATATTCCTGTCTTT+TGG | + | chr1.3:2286048-2286067 | MS.gene27006:intron | 30.0% |
| ! | TGAGGTAAAATTGATTCTGA+AGG | + | chr1.3:2285131-2285150 | MS.gene27006:intron | 30.0% |
| !! | AATGTGATGGATTCTAGAAT+TGG | + | chr1.3:2286406-2286425 | MS.gene27006:CDS | 30.0% |
| !! | ATGTGATGGATTCTAGAATT+GGG | + | chr1.3:2286407-2286426 | MS.gene27006:CDS | 30.0% |
| !!! | ACTTTGTTGTTTTTCCAATC+CGG | - | chr1.3:2284551-2284570 | None:intergenic | 30.0% |
| AACAACAAGGTCAAATTGCA+GGG | + | chr1.3:2286311-2286330 | MS.gene27006:CDS | 35.0% | |
| AATTACAGTGAATCTGTAGG+AGG | + | chr1.3:2284031-2284050 | MS.gene27006:CDS | 35.0% | |
| ACATATTGCCCCTTTCTATT+TGG | + | chr1.3:2285002-2285021 | MS.gene27006:intron | 35.0% | |
| ACTCTAATGCAAGTGAAACA+TGG | - | chr1.3:2286588-2286607 | None:intergenic | 35.0% | |
| AGCAGTGAATTGGTTACAAA+AGG | + | chr1.3:2284949-2284968 | MS.gene27006:intron | 35.0% | |
| ATATGCTGTCTATTGATCAG+GGG | + | chr1.3:2284098-2284117 | MS.gene27006:CDS | 35.0% | |
| CAAAACAATGTCAAAAGGGA+GGG | + | chr1.3:2284361-2284380 | MS.gene27006:CDS | 35.0% | |
| CAATCTATGCAAGTATCTTC+AGG | + | chr1.3:2284625-2284644 | MS.gene27006:CDS | 35.0% | |
| CCTATCTCAATCAACCAAAA+TGG | + | chr1.3:2286487-2286506 | MS.gene27006:CDS | 35.0% | |
| CCTTAACTCTCATTACCTTA+AGG | + | chr1.3:2284471-2284490 | MS.gene27006:CDS | 35.0% | |
| CCTTAAGGTAATGAGAGTTA+AGG | - | chr1.3:2284474-2284493 | None:intergenic | 35.0% | |
| CGATTCAACCAAATAGAAAG+GGG | - | chr1.3:2285013-2285032 | None:intergenic | 35.0% | |
| CTTCAATAGGCCTTAATGAA+GGG | + | chr1.3:2284401-2284420 | MS.gene27006:CDS | 35.0% | |
| GAATATGCTGTCTATTGATC+AGG | + | chr1.3:2284096-2284115 | MS.gene27006:CDS | 35.0% | |
| GACGATTCAACCAAATAGAA+AGG | - | chr1.3:2285015-2285034 | None:intergenic | 35.0% | |
| GGATACTGATATTGAAAGGA+AGG | - | chr1.3:2284229-2284248 | None:intergenic | 35.0% | |
| GGATTCAAAGTAGTGATCAT+TGG | + | chr1.3:2286380-2286399 | MS.gene27006:CDS | 35.0% | |
| GGATTCAGAGAAAATCATGT+TGG | + | chr1.3:2285801-2285820 | MS.gene27006:CDS | 35.0% | |
| TCAAAACAATGTCAAAAGGG+AGG | + | chr1.3:2284360-2284379 | MS.gene27006:CDS | 35.0% | |
| TCAATCAACCAAAATGGTGA+TGG | + | chr1.3:2286493-2286512 | MS.gene27006:CDS | 35.0% | |
| TCATAATTGTACCTGGTTTC+TGG | - | chr1.3:2285845-2285864 | None:intergenic | 35.0% | |
| TCCTTTCAATATCAGTATCC+CGG | + | chr1.3:2284229-2284248 | MS.gene27006:CDS | 35.0% | |
| TGATCATTGGACAAATGTGA+TGG | + | chr1.3:2286393-2286412 | MS.gene27006:CDS | 35.0% | |
| TTGTACATTTCTTCGACCAT+TGG | - | chr1.3:2286151-2286170 | None:intergenic | 35.0% | |
| TTTCACTTGCATTAGAGTTG+AGG | + | chr1.3:2286590-2286609 | MS.gene27006:CDS | 35.0% | |
| ! | CAAAGAAGAGTTTGGTGATT+CGG | + | chr1.3:2286168-2286187 | MS.gene27006:CDS | 35.0% |
| ! | CGAATTGGTTTATTAATGCG+AGG | + | chr1.3:2286110-2286129 | MS.gene27006:CDS | 35.0% |
| ! | GAGATAGGTGGATTTGAATA+AGG | - | chr1.3:2286475-2286494 | None:intergenic | 35.0% |
| ! | GAGTTGAATAACTTTGGTGT+TGG | + | chr1.3:2286559-2286578 | MS.gene27006:CDS | 35.0% |
| ! | GCATTTGATGACAGTATTGT+CGG | - | chr1.3:2285353-2285372 | None:intergenic | 35.0% |
| ! | GCCAAATTCAATTGACTCAA+AGG | + | chr1.3:2285490-2285509 | MS.gene27006:CDS | 35.0% |
| ! | TCTAGAATTGGGAAAATGCA+AGG | + | chr1.3:2286418-2286437 | MS.gene27006:CDS | 35.0% |
| ! | TGTTGTGTCATCTTTTGACA+TGG | + | chr1.3:2285377-2285396 | MS.gene27006:CDS | 35.0% |
| !! | AACTCTGAAAGTGATGGATT+TGG | + | chr1.3:2286613-2286632 | MS.gene27006:CDS | 35.0% |
| !! | TGTCAGGTTATTTTACCCTT+TGG | - | chr1.3:2285913-2285932 | None:intergenic | 35.0% |
| !! | TTGAATAACTTTGGTGTTGG+TGG | + | chr1.3:2286562-2286581 | MS.gene27006:CDS | 35.0% |
| !! | TTTTGGTTGATTGAGATAGG+TGG | - | chr1.3:2286487-2286506 | None:intergenic | 35.0% |
| !!! | CCATTTTGGTTGATTGAGAT+AGG | - | chr1.3:2286490-2286509 | None:intergenic | 35.0% |
| AAATGCAAGGTGACCAACAA+AGG | + | chr1.3:2286431-2286450 | MS.gene27006:CDS | 40.0% | |
| AAGGTTTACCTCATCCAACA+TGG | - | chr1.3:2284740-2284759 | None:intergenic | 40.0% | |
| AATCCCTCTATCCAATTCTG+TGG | - | chr1.3:2286365-2286384 | None:intergenic | 40.0% | |
| AATGAGTATAGGGGAACCTA+CGG | - | chr1.3:2285690-2285709 | None:intergenic | 40.0% | |
| ACAAACTCGTGCAACAAATG+TGG | - | chr1.3:2286757-2286776 | None:intergenic | 40.0% | |
| ATCATGTTGGCAAGACAAAC+AGG | + | chr1.3:2285814-2285833 | MS.gene27006:CDS | 40.0% | |
| ATTCATATCAGGTGGCGAAT+TGG | + | chr1.3:2286095-2286114 | MS.gene27006:intron | 40.0% | |
| CAAACTCGTGCAACAAATGT+GGG | - | chr1.3:2286756-2286775 | None:intergenic | 40.0% | |
| CAACCACAGAATTGGATAGA+GGG | + | chr1.3:2286359-2286378 | MS.gene27006:CDS | 40.0% | |
| CAGTAGCAATAGCAGTGAAT+TGG | + | chr1.3:2284939-2284958 | MS.gene27006:intron | 40.0% | |
| CCTTCAATAGGCCTTAATGA+AGG | + | chr1.3:2284400-2284419 | MS.gene27006:CDS | 40.0% | |
| CCTTCATTAAGGCCTATTGA+AGG | - | chr1.3:2284403-2284422 | None:intergenic | 40.0% | |
| CGCAAATCTCAAACTTGAAG+GGG | + | chr1.3:2284278-2284297 | MS.gene27006:CDS | 40.0% | |
| GAACAACAAGGTCAAATTGC+AGG | + | chr1.3:2286310-2286329 | MS.gene27006:CDS | 40.0% | |
| GATCAGATTGCCCTTCATTA+AGG | - | chr1.3:2284414-2284433 | None:intergenic | 40.0% | |
| GATGCTTCCAAAGATTCTGA+TGG | + | chr1.3:2284589-2284608 | MS.gene27006:CDS | 40.0% | |
| GCGCAAATCTCAAACTTGAA+GGG | + | chr1.3:2284277-2284296 | MS.gene27006:CDS | 40.0% | |
| GGAAAGCAACAACACAAGTT+TGG | + | chr1.3:2286727-2286746 | MS.gene27006:CDS | 40.0% | |
| TCAACCACAGAATTGGATAG+AGG | + | chr1.3:2286358-2286377 | MS.gene27006:CDS | 40.0% | |
| TCGAGTGTGGGATGATAAAA+GGG | + | chr1.3:2286249-2286268 | MS.gene27006:CDS | 40.0% | |
| TCTATCCAATTCTGTGGTTG+AGG | - | chr1.3:2286359-2286378 | None:intergenic | 40.0% | |
| TGCATCTCTTAAGGATGATG+AGG | + | chr1.3:2284303-2284322 | MS.gene27006:CDS | 40.0% | |
| TGCGCAAATCTCAAACTTGA+AGG | + | chr1.3:2284276-2284295 | MS.gene27006:CDS | 40.0% | |
| TGTTTGCGTGATGCTATTAG+CGG | + | chr1.3:2285468-2285487 | MS.gene27006:CDS | 40.0% | |
| TTAAGGCCTATTGAAGGATG+TGG | - | chr1.3:2284397-2284416 | None:intergenic | 40.0% | |
| TTCGAGTGTGGGATGATAAA+AGG | + | chr1.3:2286248-2286267 | MS.gene27006:CDS | 40.0% | |
| TTGGTGTAATGAGACAAGCT+TGG | + | chr1.3:2285592-2285611 | MS.gene27006:CDS | 40.0% | |
| ! | ACTTTTGTCCATGTTGGATG+AGG | + | chr1.3:2284729-2284748 | MS.gene27006:CDS | 40.0% |
| ! | CAACAAAGTTTTCGTGATGC+TGG | + | chr1.3:2284562-2284581 | MS.gene27006:CDS | 40.0% |
| ! | TCATCTTTTGACATGGTTGC+TGG | + | chr1.3:2285384-2285403 | MS.gene27006:CDS | 40.0% |
| ! | TTATGCAGCCATCACCATTT+TGG | - | chr1.3:2286504-2286523 | None:intergenic | 40.0% |
| ! | TTGAGGAACTCTGAAAGTGA+TGG | + | chr1.3:2286607-2286626 | MS.gene27006:CDS | 40.0% |
| !! | AAATGGTGATGGCTGCATAA+TGG | + | chr1.3:2286504-2286523 | MS.gene27006:CDS | 40.0% |
| !! | AGTATTGACACAGAGCTTTC+AGG | - | chr1.3:2285636-2285655 | None:intergenic | 40.0% |
| !! | TGAGAGTTAAGGGCATTGTT+CGG | - | chr1.3:2284463-2284482 | None:intergenic | 40.0% |
| AAGATCCCGAAGAAAACGCT+TGG | - | chr1.3:2283973-2283992 | None:intergenic | 45.0% | |
| AATAAATGCTGTCGTTCCGC+AGG | - | chr1.3:2284694-2284713 | None:intergenic | 45.0% | |
| AATATGACTTAGTGCGCGTC+TGG | - | chr1.3:2286039-2286058 | None:intergenic | 45.0% | |
| AGACGATGATGTTCGAGTGT+GGG | + | chr1.3:2286237-2286256 | MS.gene27006:CDS | 45.0% | |
| AGCAAGAGCAGTGTATGGTT+CGG | - | chr1.3:2285421-2285440 | None:intergenic | 45.0% | |
| ATCCAATTCTGTGGTTGAGG+AGG | - | chr1.3:2286356-2286375 | None:intergenic | 45.0% | |
| ATCCTCCTCAACCACAGAAT+TGG | + | chr1.3:2286351-2286370 | MS.gene27006:CDS | 45.0% | |
| ATGGCATCTTTGTCTTCTGG+AGG | + | chr1.3:2284334-2284353 | MS.gene27006:CDS | 45.0% | |
| CAAAAAGCTCTTCAGCAGCT+TGG | + | chr1.3:2285573-2285592 | MS.gene27006:CDS | 45.0% | |
| CAAGTATCTTCAGGCCCTAA+TGG | + | chr1.3:2284634-2284653 | MS.gene27006:CDS | 45.0% | |
| CGAAAGGGCTTGAAACAAAC+CGG | + | chr1.3:2284529-2284548 | MS.gene27006:CDS | 45.0% | |
| CTTACGCGGAGATGATATCT+GGG | + | chr1.3:2283990-2284009 | MS.gene27006:CDS | 45.0% | |
| GAATAACTGCTGATCCTTGC+AGG | - | chr1.3:2284441-2284460 | None:intergenic | 45.0% | |
| GACTATCACTTCACAGACTC+TGG | + | chr1.3:2286706-2286725 | MS.gene27006:CDS | 45.0% | |
| GAGCAAAACGTACAATGCCA+GGG | + | chr1.3:2284175-2284194 | MS.gene27006:CDS | 45.0% | |
| GATTTGCGCATTCATTAGCG+AGG | - | chr1.3:2284266-2284285 | None:intergenic | 45.0% | |
| GCAAGTAGCAACCAAAAGAC+AGG | - | chr1.3:2286062-2286081 | None:intergenic | 45.0% | |
| GCCGGGATACTGATATTGAA+AGG | - | chr1.3:2284233-2284252 | None:intergenic | 45.0% | |
| TAAGCTGCTGATCGACATAG+CGG | - | chr1.3:2285548-2285567 | None:intergenic | 45.0% | |
| TCATCGTCTCTCAGAGCTTT+CGG | - | chr1.3:2286226-2286245 | None:intergenic | 45.0% | |
| TCATTACCTTAAGGCAGCAC+AGG | + | chr1.3:2284480-2284499 | MS.gene27006:CDS | 45.0% | |
| TCTTACGCGGAGATGATATC+TGG | + | chr1.3:2283989-2284008 | MS.gene27006:CDS | 45.0% | |
| TGCATGGCATCTTTGTCTTC+TGG | + | chr1.3:2284331-2284350 | MS.gene27006:CDS | 45.0% | |
| TGCGGAACGACAGCATTTAT+TGG | + | chr1.3:2284693-2284712 | MS.gene27006:CDS | 45.0% | |
| ! | CAATTGACTCAAAGGAGCCT+TGG | + | chr1.3:2285498-2285517 | MS.gene27006:CDS | 45.0% |
| ! | CGGTTTGTTTCAAGCCCTTT+CGG | - | chr1.3:2284531-2284550 | None:intergenic | 45.0% |
| ! | GTTTTCTTCGGGATCTTACG+CGG | + | chr1.3:2283976-2283995 | MS.gene27006:CDS | 45.0% |
| ! | TCCGAACCAAGCGTTTTCTT+CGG | + | chr1.3:2283964-2283983 | MS.gene27006:CDS | 45.0% |
| ! | TTTGACATGGTTGCTGGTTG+CGG | + | chr1.3:2285390-2285409 | MS.gene27006:CDS | 45.0% |
| !! | GTTGATGGTGCTGAACAACA+AGG | + | chr1.3:2286298-2286317 | MS.gene27006:CDS | 45.0% |
| AACAGGCTTGACCAGAAACC+AGG | + | chr1.3:2285831-2285850 | MS.gene27006:CDS | 50.0% | |
| AATGCTCGAAGAGCCATGCA+CGG | - | chr1.3:2285659-2285678 | None:intergenic | 50.0% | |
| ACGCAAACAGCGAAAGTGAC+GGG | - | chr1.3:2285457-2285476 | None:intergenic | 50.0% | |
| AGCGATCCAAGGACACAGTT+CGG | + | chr1.3:2284139-2284158 | MS.gene27006:CDS | 50.0% | |
| ATAGGGGAACCTACGGATGA+AGG | - | chr1.3:2285683-2285702 | None:intergenic | 50.0% | |
| ATGCTAGTACGAGCGATCCA+AGG | + | chr1.3:2284128-2284147 | MS.gene27006:CDS | 50.0% | |
| CACGCAAACAGCGAAAGTGA+CGG | - | chr1.3:2285458-2285477 | None:intergenic | 50.0% | |
| CCCGAAGAAAACGCTTGGTT+CGG | - | chr1.3:2283968-2283987 | None:intergenic | 50.0% | |
| CGAGCAAAACGTACAATGCC+AGG | + | chr1.3:2284174-2284193 | MS.gene27006:CDS | 50.0% | |
| CGAGCATTTCCTTCATCCGT+AGG | + | chr1.3:2285671-2285690 | MS.gene27006:intron | 50.0% | |
| CGCAAAGCAAGAGCAGTGTA+TGG | - | chr1.3:2285426-2285445 | None:intergenic | 50.0% | |
| CTGTGTCAATACTCCGTGCA+TGG | + | chr1.3:2285643-2285662 | MS.gene27006:CDS | 50.0% | |
| CTTTCAGGAAGTCCTCTCTG+AGG | - | chr1.3:2285621-2285640 | None:intergenic | 50.0% | |
| GAAGGGGTCTGCATCTCTTA+AGG | + | chr1.3:2284294-2284313 | MS.gene27006:CDS | 50.0% | |
| GAAGTTCCTGTGCTGCCTTA+AGG | - | chr1.3:2284489-2284508 | None:intergenic | 50.0% | |
| GAGACGATGATGTTCGAGTG+TGG | + | chr1.3:2286236-2286255 | MS.gene27006:CDS | 50.0% | |
| GGGCTTGAAACAAACCGGAT+TGG | + | chr1.3:2284534-2284553 | MS.gene27006:CDS | 50.0% | |
| GTATTCCCTCCTGTTCTCCA+AGG | - | chr1.3:2285518-2285537 | None:intergenic | 50.0% | |
| TAGCGAGGTGAAACTGTTGC+CGG | - | chr1.3:2284251-2284270 | None:intergenic | 50.0% | |
| TCAAAGGAGCCTTGGAGAAC+AGG | + | chr1.3:2285506-2285525 | MS.gene27006:CDS | 50.0% | |
| TGGATCGCTCGTACTAGCAT+TGG | - | chr1.3:2284128-2284147 | None:intergenic | 50.0% | |
| TTCATGTGAGCTATCGCCTG+CGG | + | chr1.3:2284675-2284694 | MS.gene27006:CDS | 50.0% | |
| TTGTCCCAAGGCTAAGAGAC+AGG | - | chr1.3:2284201-2284220 | None:intergenic | 50.0% | |
| ! | ACAGCGAAAGTGACGGGAAA+TGG | - | chr1.3:2285451-2285470 | None:intergenic | 50.0% |
| ! | CCGAACCAAGCGTTTTCTTC+GGG | + | chr1.3:2283965-2283984 | MS.gene27006:CDS | 50.0% |
| ! | GGTGCGTCTTTGGAAACCAA+TGG | + | chr1.3:2286132-2286151 | MS.gene27006:CDS | 50.0% |
| ! | TTAATGCGAGGGTGCGTCTT+TGG | + | chr1.3:2286122-2286141 | MS.gene27006:CDS | 50.0% |
| !! | AGGAAGGCATCATTGTCCCA+AGG | - | chr1.3:2284213-2284232 | None:intergenic | 50.0% |
| AAGGAGCCTTGGAGAACAGG+AGG | + | chr1.3:2285509-2285528 | MS.gene27006:CDS | 55.0% | |
| ACGAGTCCGAACTGTGTCCT+TGG | - | chr1.3:2284148-2284167 | None:intergenic | 55.0% | |
| ACTGCTGATCCTTGCAGGCA+CGG | - | chr1.3:2284436-2284455 | None:intergenic | 55.0% | |
| AGCGAGGTGAAACTGTTGCC+GGG | - | chr1.3:2284250-2284269 | None:intergenic | 55.0% | |
| AGGAGCCTTGGAGAACAGGA+GGG | + | chr1.3:2285510-2285529 | MS.gene27006:CDS | 55.0% | |
| CAAGCTTGGAGACCTCAGAG+AGG | + | chr1.3:2285606-2285625 | MS.gene27006:CDS | 55.0% | |
| CAATCTGATCCGTGCCTGCA+AGG | + | chr1.3:2284424-2284443 | MS.gene27006:CDS | 55.0% | |
| GGATGATGAGGCTGAGTGCA+TGG | + | chr1.3:2284315-2284334 | MS.gene27006:CDS | 55.0% | |
| ! | AGGGCCTGTCTCTTAGCCTT+GGG | + | chr1.3:2284194-2284213 | MS.gene27006:CDS | 55.0% |
| ! | TGATCGACATAGCGGAGACG+AGG | - | chr1.3:2285540-2285559 | None:intergenic | 55.0% |
| CAAGGCTAAGAGACAGGCCC+TGG | - | chr1.3:2284195-2284214 | None:intergenic | 60.0% | |
| CAGGGCCTGTCTCTTAGCCT+TGG | + | chr1.3:2284193-2284212 | MS.gene27006:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 2283959 | 2286783 | 2283959 | ID=MS.gene27006 |
| chr1.3 | mRNA | 2283959 | 2286783 | 2283959 | ID=MS.gene27006.t1;Parent=MS.gene27006 |
| chr1.3 | exon | 2283959 | 2284750 | 2283959 | ID=MS.gene27006.t1.exon1;Parent=MS.gene27006.t1 |
| chr1.3 | CDS | 2283959 | 2284750 | 2283959 | ID=cds.MS.gene27006.t1;Parent=MS.gene27006.t1 |
| chr1.3 | exon | 2285336 | 2285688 | 2285336 | ID=MS.gene27006.t1.exon2;Parent=MS.gene27006.t1 |
| chr1.3 | CDS | 2285336 | 2285688 | 2285336 | ID=cds.MS.gene27006.t1;Parent=MS.gene27006.t1 |
| chr1.3 | exon | 2285792 | 2285852 | 2285792 | ID=MS.gene27006.t1.exon3;Parent=MS.gene27006.t1 |
| chr1.3 | CDS | 2285792 | 2285852 | 2285792 | ID=cds.MS.gene27006.t1;Parent=MS.gene27006.t1 |
| chr1.3 | exon | 2286106 | 2286783 | 2286106 | ID=MS.gene27006.t1.exon4;Parent=MS.gene27006.t1 |
| chr1.3 | CDS | 2286106 | 2286783 | 2286106 | ID=cds.MS.gene27006.t1;Parent=MS.gene27006.t1 |
| Gene Sequence |
| Protein sequence |
