Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27269.t1 | XP_003589334.1 | 98.6 | 627 | 9 | 0 | 1 | 627 | 1 | 627 | 0.00E+00 | 1226.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27269.t1 | Q9SIW1 | 63.1 | 282 | 69 | 6 | 173 | 443 | 117 | 374 | 5.6e-86 | 320.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27269.t1 | G7I5U5 | 98.6 | 627 | 9 | 0 | 1 | 627 | 1 | 627 | 0.0e+00 | 1226.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene27269.t1 | TF | HB-BELL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049983 | MS.gene27269 | 0.807306 | 5.39E-50 | -1.69E-46 |
| MS.gene050633 | MS.gene27269 | 0.817406 | 3.35E-52 | -1.69E-46 |
| MS.gene050657 | MS.gene27269 | 0.825354 | 4.91E-54 | -1.69E-46 |
| MS.gene050759 | MS.gene27269 | 0.802094 | 6.60E-49 | -1.69E-46 |
| MS.gene050826 | MS.gene27269 | 0.82418 | 9.28E-54 | -1.69E-46 |
| MS.gene051147 | MS.gene27269 | 0.813993 | 1.93E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene27269 | 0.819672 | 1.03E-52 | -1.69E-46 |
| MS.gene051800 | MS.gene27269 | 0.863484 | 2.41E-64 | -1.69E-46 |
| MS.gene052463 | MS.gene27269 | 0.840125 | 1.05E-57 | -1.69E-46 |
| MS.gene052674 | MS.gene27269 | 0.853271 | 2.67E-61 | -1.69E-46 |
| MS.gene052675 | MS.gene27269 | 0.85587 | 4.72E-62 | -1.69E-46 |
| MS.gene052677 | MS.gene27269 | 0.861397 | 1.06E-63 | -1.69E-46 |
| MS.gene052775 | MS.gene27269 | 0.806681 | 7.31E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene27269 | 0.805458 | 1.32E-49 | -1.69E-46 |
| MS.gene053486 | MS.gene27269 | 0.801885 | 7.29E-49 | -1.69E-46 |
| MS.gene05350 | MS.gene27269 | 0.806628 | 7.50E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene27269 | -0.806221 | 9.14E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene27269 | 0.8089 | 2.47E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene27269 | 0.82342 | 1.40E-53 | -1.69E-46 |
| MS.gene054479 | MS.gene27269 | 0.804244 | 2.37E-49 | -1.69E-46 |
| MS.gene054641 | MS.gene27269 | 0.824846 | 6.47E-54 | -1.69E-46 |
| MS.gene055327 | MS.gene27269 | 0.801177 | 1.02E-48 | -1.69E-46 |
| MS.gene055864 | MS.gene27269 | 0.811796 | 5.85E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene27269 | 0.847199 | 1.35E-59 | -1.69E-46 |
| MS.gene056480 | MS.gene27269 | 0.803845 | 2.87E-49 | -1.69E-46 |
| MS.gene056779 | MS.gene27269 | 0.815917 | 7.23E-52 | -1.69E-46 |
| MS.gene058081 | MS.gene27269 | 0.8245 | 7.81E-54 | -1.69E-46 |
| MS.gene058223 | MS.gene27269 | -0.800335 | 1.51E-48 | -1.69E-46 |
| MS.gene058289 | MS.gene27269 | 0.831249 | 1.86E-55 | -1.69E-46 |
| MS.gene058647 | MS.gene27269 | 0.822185 | 2.71E-53 | -1.69E-46 |
| MS.gene059438 | MS.gene27269 | 0.808143 | 3.58E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene27269 | 0.809939 | 1.48E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene27269 | 0.804303 | 2.30E-49 | -1.69E-46 |
| MS.gene060122 | MS.gene27269 | -0.87303 | 2.02E-67 | -1.69E-46 |
| MS.gene060125 | MS.gene27269 | -0.861646 | 8.86E-64 | -1.69E-46 |
| MS.gene060373 | MS.gene27269 | 0.815274 | 1.01E-51 | -1.69E-46 |
| MS.gene060380 | MS.gene27269 | 0.813061 | 3.10E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene27269 | 0.86716 | 1.68E-65 | -1.69E-46 |
| MS.gene060785 | MS.gene27269 | 0.80123 | 9.93E-49 | -1.69E-46 |
| MS.gene060850 | MS.gene27269 | 0.802469 | 5.53E-49 | -1.69E-46 |
| MS.gene060851 | MS.gene27269 | 0.811822 | 5.78E-51 | -1.69E-46 |
| MS.gene060852 | MS.gene27269 | 0.808518 | 2.98E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene27269 | 0.829202 | 5.87E-55 | -1.69E-46 |
| MS.gene06121 | MS.gene27269 | 0.809904 | 1.50E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27269.t1 | MTR_1g023050 | 98.565 | 627 | 9 | 0 | 1 | 627 | 1 | 627 | 0.0 | 1292 |
| MS.gene27269.t1 | MTR_3g112300 | 59.476 | 649 | 179 | 21 | 1 | 627 | 1 | 587 | 0.0 | 676 |
| MS.gene27269.t1 | MTR_3g112300 | 67.105 | 456 | 117 | 10 | 1 | 445 | 1 | 434 | 0.0 | 578 |
| MS.gene27269.t1 | MTR_3g112300 | 61.000 | 100 | 28 | 5 | 539 | 627 | 418 | 517 | 5.23e-22 | 100 |
| MS.gene27269.t1 | MTR_3g112300 | 66.425 | 414 | 106 | 10 | 1 | 403 | 1 | 392 | 5.86e-179 | 513 |
| MS.gene27269.t1 | MTR_3g112300 | 64.631 | 393 | 106 | 10 | 1 | 382 | 1 | 371 | 1.47e-162 | 470 |
| MS.gene27269.t1 | MTR_1g057790 | 58.103 | 253 | 91 | 4 | 172 | 417 | 163 | 407 | 1.00e-89 | 291 |
| MS.gene27269.t1 | MTR_7g106320 | 58.364 | 269 | 99 | 4 | 172 | 433 | 173 | 435 | 1.52e-88 | 289 |
| MS.gene27269.t1 | MTR_8g078480 | 53.285 | 274 | 106 | 4 | 173 | 434 | 391 | 654 | 2.28e-87 | 290 |
| MS.gene27269.t1 | MTR_5g018860 | 51.418 | 282 | 113 | 5 | 165 | 434 | 333 | 602 | 2.59e-86 | 285 |
| MS.gene27269.t1 | MTR_4g051532 | 57.836 | 268 | 98 | 4 | 171 | 431 | 218 | 477 | 2.24e-85 | 282 |
| MS.gene27269.t1 | MTR_8g098815 | 51.737 | 259 | 99 | 5 | 173 | 419 | 188 | 432 | 1.42e-77 | 259 |
| MS.gene27269.t1 | MTR_3g112290 | 51.408 | 284 | 93 | 8 | 173 | 435 | 168 | 427 | 8.28e-77 | 251 |
| MS.gene27269.t1 | MTR_7g065050 | 41.234 | 308 | 137 | 8 | 174 | 462 | 141 | 423 | 1.14e-60 | 211 |
| MS.gene27269.t1 | MTR_4g019450 | 44.961 | 258 | 112 | 5 | 173 | 426 | 199 | 430 | 5.50e-59 | 208 |
| MS.gene27269.t1 | MTR_2g095050 | 43.060 | 281 | 127 | 5 | 174 | 435 | 252 | 518 | 1.53e-56 | 202 |
| MS.gene27269.t1 | MTR_1g016490 | 37.548 | 261 | 144 | 5 | 172 | 425 | 245 | 493 | 8.88e-44 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27269.t1 | AT2G16400 | 62.766 | 282 | 70 | 6 | 173 | 443 | 117 | 374 | 5.83e-112 | 344 |
| MS.gene27269.t1 | AT1G19700 | 50.919 | 381 | 123 | 9 | 79 | 429 | 78 | 424 | 4.07e-109 | 339 |
| MS.gene27269.t1 | AT1G19700 | 50.919 | 381 | 123 | 9 | 79 | 429 | 78 | 424 | 4.07e-109 | 339 |
| MS.gene27269.t1 | AT1G19700 | 50.919 | 381 | 123 | 9 | 79 | 429 | 78 | 424 | 4.07e-109 | 339 |
| MS.gene27269.t1 | AT1G19700 | 50.919 | 381 | 123 | 9 | 79 | 429 | 78 | 424 | 4.07e-109 | 339 |
| MS.gene27269.t1 | AT1G19700 | 50.919 | 381 | 123 | 9 | 79 | 429 | 78 | 424 | 4.07e-109 | 339 |
| MS.gene27269.t1 | AT1G75410 | 62.132 | 272 | 72 | 5 | 171 | 430 | 168 | 420 | 4.13e-107 | 333 |
| MS.gene27269.t1 | AT1G75410 | 62.132 | 272 | 72 | 5 | 171 | 430 | 168 | 420 | 4.13e-107 | 333 |
| MS.gene27269.t1 | AT4G34610 | 56.000 | 325 | 105 | 6 | 173 | 482 | 143 | 444 | 1.04e-106 | 332 |
| MS.gene27269.t1 | AT4G34610 | 56.000 | 325 | 105 | 6 | 173 | 482 | 143 | 444 | 1.04e-106 | 332 |
| MS.gene27269.t1 | AT4G34610 | 56.000 | 325 | 105 | 6 | 173 | 482 | 143 | 444 | 1.04e-106 | 332 |
| MS.gene27269.t1 | AT4G34610 | 56.000 | 325 | 105 | 6 | 173 | 482 | 143 | 444 | 1.04e-106 | 332 |
| MS.gene27269.t1 | AT1G75410 | 58.300 | 247 | 72 | 5 | 169 | 403 | 166 | 393 | 1.88e-85 | 273 |
| MS.gene27269.t1 | AT2G23760 | 52.075 | 265 | 102 | 4 | 173 | 424 | 240 | 492 | 1.10e-81 | 270 |
| MS.gene27269.t1 | AT2G23760 | 52.075 | 265 | 102 | 4 | 173 | 424 | 240 | 492 | 1.10e-81 | 270 |
| MS.gene27269.t1 | AT2G23760 | 52.075 | 265 | 102 | 4 | 173 | 424 | 240 | 492 | 1.10e-81 | 270 |
| MS.gene27269.t1 | AT4G36870 | 52.809 | 267 | 98 | 5 | 173 | 425 | 315 | 567 | 2.29e-81 | 272 |
| MS.gene27269.t1 | AT4G36870 | 52.809 | 267 | 98 | 5 | 173 | 425 | 315 | 567 | 2.29e-81 | 272 |
| MS.gene27269.t1 | AT2G35940 | 54.789 | 261 | 102 | 4 | 170 | 417 | 189 | 446 | 1.42e-80 | 268 |
| MS.gene27269.t1 | AT2G35940 | 54.789 | 261 | 102 | 4 | 170 | 417 | 189 | 446 | 1.42e-80 | 268 |
| MS.gene27269.t1 | AT2G35940 | 54.789 | 261 | 102 | 4 | 170 | 417 | 189 | 446 | 1.42e-80 | 268 |
| MS.gene27269.t1 | AT2G23760 | 43.533 | 317 | 102 | 5 | 173 | 424 | 240 | 544 | 1.28e-71 | 244 |
| MS.gene27269.t1 | AT5G41410 | 48.000 | 275 | 113 | 5 | 173 | 426 | 196 | 461 | 6.64e-69 | 235 |
| MS.gene27269.t1 | AT2G27220 | 45.489 | 266 | 103 | 6 | 171 | 432 | 77 | 304 | 3.58e-67 | 226 |
| MS.gene27269.t1 | AT2G27220 | 45.489 | 266 | 103 | 6 | 171 | 432 | 77 | 304 | 3.58e-67 | 226 |
| MS.gene27269.t1 | AT4G36870 | 49.593 | 246 | 96 | 5 | 173 | 404 | 315 | 546 | 3.05e-65 | 224 |
| MS.gene27269.t1 | AT4G36870 | 49.590 | 244 | 95 | 5 | 173 | 402 | 315 | 544 | 3.02e-64 | 221 |
| MS.gene27269.t1 | AT1G75430 | 42.125 | 273 | 130 | 7 | 172 | 430 | 18 | 276 | 3.18e-64 | 213 |
| MS.gene27269.t1 | AT2G27220 | 43.066 | 274 | 116 | 6 | 171 | 432 | 77 | 322 | 5.51e-64 | 218 |
| MS.gene27269.t1 | AT5G02030 | 43.123 | 269 | 113 | 6 | 174 | 426 | 174 | 418 | 2.95e-56 | 200 |
| MS.gene27269.t1 | AT2G27990 | 45.992 | 237 | 112 | 5 | 216 | 445 | 289 | 516 | 6.02e-54 | 194 |
| MS.gene27269.t1 | AT4G32980 | 39.526 | 253 | 136 | 6 | 174 | 425 | 205 | 441 | 2.06e-43 | 162 |
| MS.gene27269.t1 | AT4G32980 | 39.526 | 253 | 136 | 6 | 174 | 425 | 205 | 441 | 2.06e-43 | 162 |
| MS.gene27269.t1 | AT1G75430 | 34.667 | 225 | 119 | 7 | 172 | 382 | 18 | 228 | 2.35e-31 | 124 |
| MS.gene27269.t1 | AT2G27990 | 40.936 | 171 | 88 | 4 | 216 | 382 | 289 | 450 | 4.73e-27 | 115 |
Find 148 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATAATTGTACCTGGTTTC+TGG | 0.152099 | 1.1:-1545224 | None:intergenic |
| TCCTTTGAGTCAATTGAATT+TGG | 0.219438 | 1.1:-1544873 | None:intergenic |
| TTCGAGTGTGGGATGATAAA+AGG | 0.235165 | 1.1:+1545629 | MS.gene27269:CDS |
| TTATGCAGCCATCACCATTT+TGG | 0.238602 | 1.1:-1545882 | None:intergenic |
| TGCATGGCATCTTTGTCTTC+TGG | 0.248717 | 1.1:+1543713 | MS.gene27269:CDS |
| TGCGGAACGACAGCATTTAT+TGG | 0.269167 | 1.1:+1544075 | MS.gene27269:CDS |
| GAGATAGGTGGATTTGAATA+AGG | 0.271180 | 1.1:-1545853 | None:intergenic |
| TCTTACGCGGAGATGATATC+TGG | 0.303124 | 1.1:+1543371 | MS.gene27269:CDS |
| TTAATGCGAGGGTGCGTCTT+TGG | 0.310569 | 1.1:+1545503 | MS.gene27269:CDS |
| CCAATGATGACATCAATAAA+AGG | 0.314376 | 1.1:+1546022 | MS.gene27269:CDS |
| GATCAGATTGCCCTTCATTA+AGG | 0.326393 | 1.1:-1543793 | None:intergenic |
| CGGTTTGTTTCAAGCCCTTT+CGG | 0.335842 | 1.1:-1543910 | None:intergenic |
| AGTATTGACACAGAGCTTTC+AGG | 0.345023 | 1.1:-1545015 | None:intergenic |
| CCTATCTCAATCAACCAAAA+TGG | 0.345586 | 1.1:+1545868 | MS.gene27269:CDS |
| AATGTGATGGATTCTAGAAT+TGG | 0.353123 | 1.1:+1545787 | MS.gene27269:CDS |
| AACTCTGAAAGTGATGGATT+TGG | 0.353605 | 1.1:+1545994 | MS.gene27269:CDS |
| GAATAACTGCTGATCCTTGC+AGG | 0.353930 | 1.1:-1543820 | None:intergenic |
| GAATATGCTGTCTATTGATC+AGG | 0.361084 | 1.1:+1543478 | MS.gene27269:CDS |
| TCATCGTCTCTTAGAGCTTT+CGG | 0.361957 | 1.1:-1545604 | None:intergenic |
| TGTTCATGTTAAACCTTTGT+TGG | 0.369527 | 1.1:-1545825 | None:intergenic |
| GTTGAAGTTTATGACATCTA+TGG | 0.390672 | 1.1:+1543445 | MS.gene27269:CDS |
| GATAAATCATCATAAGTTGT+AGG | 0.393638 | 1.1:-1545916 | None:intergenic |
| TTGTTTGCATTAGAACCATT+AGG | 0.396087 | 1.1:-1544031 | None:intergenic |
| CAAGTATCTTCAGGCCCTAA+TGG | 0.396669 | 1.1:+1544016 | MS.gene27269:CDS |
| CAAAGAAGAGTTTGGTGATT+CGG | 0.398248 | 1.1:+1545549 | MS.gene27269:CDS |
| AGGGCCTGTCTCTTAGCCTT+GGG | 0.402513 | 1.1:+1543576 | MS.gene27269:CDS |
| TATAATCCACATCCTTCAAT+AGG | 0.405384 | 1.1:+1543770 | MS.gene27269:CDS |
| TCAAAGGAGCCTTGGAGAAC+AGG | 0.407571 | 1.1:+1544888 | MS.gene27269:CDS |
| TGTTTGCATTAGAACCATTA+GGG | 0.408633 | 1.1:-1544030 | None:intergenic |
| CAGGGCCTGTCTCTTAGCCT+TGG | 0.411685 | 1.1:+1543575 | MS.gene27269:CDS |
| ATTCATATCAGGTGGCGAAT+TGG | 0.412122 | 1.1:+1545476 | MS.gene27269:intron |
| GAACAACAAGGTCAAATTGC+AGG | 0.412751 | 1.1:+1545691 | MS.gene27269:CDS |
| CCCGAAGAAAACGCTTGGTT+CGG | 0.414480 | 1.1:-1543347 | None:intergenic |
| GGAAAGCAACAACACAAGTT+TGG | 0.415587 | 1.1:+1546108 | MS.gene27269:CDS |
| CCTTAACTCTCATTACCTTA+AGG | 0.423186 | 1.1:+1543853 | MS.gene27269:CDS |
| GAAGGGGTCTGCATCTCTTA+AGG | 0.423750 | 1.1:+1543676 | MS.gene27269:CDS |
| ATCCTCCTCAACCACAGAAT+TGG | 0.427692 | 1.1:+1545732 | MS.gene27269:CDS |
| ATCATGTTGGCAAGACAAAC+AGG | 0.427985 | 1.1:+1545196 | MS.gene27269:CDS |
| TTATCAGAGTTGAATAACTT+TGG | 0.446808 | 1.1:+1545934 | MS.gene27269:CDS |
| ACAGCGAAAGTGACGGGAAA+TGG | 0.449081 | 1.1:-1544830 | None:intergenic |
| TGCGCAAATCTCAAACTTGA+AGG | 0.449976 | 1.1:+1543658 | MS.gene27269:CDS |
| TAGTCTAACAAATCAGTATC+TGG | 0.450445 | 1.1:-1546069 | None:intergenic |
| ACGAGTCCGAACTGTGTCCT+TGG | 0.450686 | 1.1:-1543527 | None:intergenic |
| CTTAAGGTAATGAGAGTTAA+GGG | 0.452147 | 1.1:-1543852 | None:intergenic |
| GCATTTGATGACAGTATTGT+CGG | 0.454790 | 1.1:-1544732 | None:intergenic |
| CCTTAAGGTAATGAGAGTTA+AGG | 0.455316 | 1.1:-1543853 | None:intergenic |
| TAGCGAGGTGAAACTGTTGC+CGG | 0.455506 | 1.1:-1543630 | None:intergenic |
| AAATGGTGATGGCTGCATAA+TGG | 0.456126 | 1.1:+1545885 | MS.gene27269:CDS |
| GAAGTTCCTGTGCTGCCTTA+AGG | 0.456385 | 1.1:-1543868 | None:intergenic |
| TCTATCCAATTCTGTGGTTG+AGG | 0.458494 | 1.1:-1545737 | None:intergenic |
| CGAGCAAAACGTACAATGCC+AGG | 0.460386 | 1.1:+1543556 | MS.gene27269:CDS |
| TTGTACATTTCTTCGACCAT+TGG | 0.464693 | 1.1:-1545529 | None:intergenic |
| TTTGACATGGTTGCTGGTTG+CGG | 0.469668 | 1.1:+1544772 | MS.gene27269:CDS |
| GACTATCACTTCACAGACTC+TGG | 0.470328 | 1.1:+1546087 | MS.gene27269:CDS |
| GATTTCAAAACAATGTCAAA+AGG | 0.470576 | 1.1:+1543738 | MS.gene27269:CDS |
| TTAAGGCCTATTGAAGGATG+TGG | 0.474446 | 1.1:-1543776 | None:intergenic |
| CCTTCATTAAGGCCTATTGA+AGG | 0.476704 | 1.1:-1543782 | None:intergenic |
| ATGTGATGGATTCTAGAATT+GGG | 0.476805 | 1.1:+1545788 | MS.gene27269:CDS |
| CGAAAGGGCTTGAAACAAAC+CGG | 0.477844 | 1.1:+1543911 | MS.gene27269:CDS |
| TCGAGTGTGGGATGATAAAA+GGG | 0.478699 | 1.1:+1545630 | MS.gene27269:CDS |
| GAAATGTACAAAGAAGAGTT+TGG | 0.481440 | 1.1:+1545541 | MS.gene27269:CDS |
| GGATTCAAAGTAGTGATCAT+TGG | 0.484660 | 1.1:+1545761 | MS.gene27269:CDS |
| CAATCTATGCAAGTATCTTC+AGG | 0.487753 | 1.1:+1544007 | MS.gene27269:CDS |
| TTGAATAACTTTGGTGTTGG+TGG | 0.488559 | 1.1:+1545943 | MS.gene27269:CDS |
| CCTTCAATAGGCCTTAATGA+AGG | 0.490236 | 1.1:+1543782 | MS.gene27269:CDS |
| CAATTGACTCAAAGGAGCCT+TGG | 0.496196 | 1.1:+1544880 | MS.gene27269:CDS |
| GACAAGTTAATGAATGTTGA+TGG | 0.500544 | 1.1:+1545664 | MS.gene27269:CDS |
| ACGCAAACAGCGAAAGTGAC+GGG | 0.500857 | 1.1:-1544836 | None:intergenic |
| ACAGATTCACTGTAATTATG+AGG | 0.502023 | 1.1:-1543407 | None:intergenic |
| TCCTTTCAATATCAGTATCC+CGG | 0.503550 | 1.1:+1543611 | MS.gene27269:CDS |
| TCAACCACAGAATTGGATAG+AGG | 0.504097 | 1.1:+1545739 | MS.gene27269:CDS |
| AGCAAGAGCAGTGTATGGTT+CGG | 0.505239 | 1.1:-1544800 | None:intergenic |
| TGAGAGTTAAGGGCATTGTT+CGG | 0.506066 | 1.1:-1543842 | None:intergenic |
| GCCAAATTCAATTGACTCAA+AGG | 0.508585 | 1.1:+1544872 | MS.gene27269:CDS |
| GATGCTTCCAAAGATTCTGA+TGG | 0.513635 | 1.1:+1543971 | MS.gene27269:CDS |
| CGCAAAGCAAGAGCAGTGTA+TGG | 0.513848 | 1.1:-1544805 | None:intergenic |
| GAAATAGTTAATGTCCGAAA+GGG | 0.516547 | 1.1:+1543896 | MS.gene27269:CDS |
| CAAGGCTAAGAGACAGGCCC+TGG | 0.521258 | 1.1:-1543574 | None:intergenic |
| ACAAACTCGTGCAACAAATG+TGG | 0.529085 | 1.1:-1546135 | None:intergenic |
| TTGTCCCAAGGCTAAGAGAC+AGG | 0.530080 | 1.1:-1543580 | None:intergenic |
| TGGATCGCTCGTACTAGCAT+TGG | 0.530376 | 1.1:-1543507 | None:intergenic |
| AATAAATGCTGTCGTTCCGC+AGG | 0.530460 | 1.1:-1544073 | None:intergenic |
| GGGCTTGAAACAAACCGGAT+TGG | 0.530868 | 1.1:+1543916 | MS.gene27269:CDS |
| AATCCCTCTATCCAATTCTG+TGG | 0.532847 | 1.1:-1545743 | None:intergenic |
| AACAGGCTTGACCAGAAACC+AGG | 0.533633 | 1.1:+1545213 | MS.gene27269:CDS |
| CGCAAATCTCAAACTTGAAG+GGG | 0.537507 | 1.1:+1543660 | MS.gene27269:CDS |
| TGTTTGCGTGATGCTATTAG+CGG | 0.542554 | 1.1:+1544850 | MS.gene27269:CDS |
| ATAGGGGAACCTACGGATGA+AGG | 0.542920 | 1.1:-1545062 | None:intergenic |
| TTTCACTTGCATTAGAGTTG+AGG | 0.543423 | 1.1:+1545971 | MS.gene27269:CDS |
| ATGGCATCTTTGTCTTCTGG+AGG | 0.543573 | 1.1:+1543716 | MS.gene27269:CDS |
| ATTTCAAAACAATGTCAAAA+GGG | 0.546039 | 1.1:+1543739 | MS.gene27269:CDS |
| AGCGATCCAAGGACACAGTT+CGG | 0.549071 | 1.1:+1543521 | MS.gene27269:CDS |
| AATATGCTGTCTATTGATCA+GGG | 0.561372 | 1.1:+1543479 | MS.gene27269:CDS |
| TCATTACCTTAAGGCAGCAC+AGG | 0.563750 | 1.1:+1543862 | MS.gene27269:CDS |
| AGCGAGGTGAAACTGTTGCC+GGG | 0.566022 | 1.1:-1543629 | None:intergenic |
| TTGAGGAACTCTGAAAGTGA+TGG | 0.567032 | 1.1:+1545988 | MS.gene27269:CDS |
| GCGCAAATCTCAAACTTGAA+GGG | 0.567269 | 1.1:+1543659 | MS.gene27269:CDS |
| CTTCAATAGGCCTTAATGAA+GGG | 0.568757 | 1.1:+1543783 | MS.gene27269:CDS |
| ATCCAATTCTGTGGTTGAGG+AGG | 0.571241 | 1.1:-1545734 | None:intergenic |
| CTGTGTCAATACTCCGTGCA+TGG | 0.572034 | 1.1:+1545025 | MS.gene27269:CDS |
| ATTTGGTATTAGTTATCCGA+AGG | 0.572160 | 1.1:+1545162 | MS.gene27269:intron |
| TCAATCAACCAAAATGGTGA+TGG | 0.572460 | 1.1:+1545874 | MS.gene27269:CDS |
| CAAAACAATGTCAAAAGGGA+GGG | 0.573643 | 1.1:+1543743 | MS.gene27269:CDS |
| ACTGCTGATCCTTGCAGGCA+CGG | 0.574395 | 1.1:-1543815 | None:intergenic |
| CAAACTCGTGCAACAAATGT+GGG | 0.576826 | 1.1:-1546134 | None:intergenic |
| AAGATCCCGAAGAAAACGCT+TGG | 0.576848 | 1.1:-1543352 | None:intergenic |
| CGAATTGGTTTATTAATGCG+AGG | 0.577323 | 1.1:+1545491 | MS.gene27269:CDS |
| TGAAATAGTTAATGTCCGAA+AGG | 0.577336 | 1.1:+1543895 | MS.gene27269:CDS |
| CTTACGCGGAGATGATATCT+GGG | 0.578743 | 1.1:+1543372 | MS.gene27269:CDS |
| GAGACGATGATGTTCGAGTG+TGG | 0.583909 | 1.1:+1545617 | MS.gene27269:CDS |
| AAATGCAAGGTGACCAACAA+AGG | 0.584563 | 1.1:+1545812 | MS.gene27269:CDS |
| GGATACTGATATTGAAAGGA+AGG | 0.586079 | 1.1:-1543608 | None:intergenic |
| TCTAGAATTGGGAAAATGCA+AGG | 0.587723 | 1.1:+1545799 | MS.gene27269:CDS |
| GTATTCCCTCCTGTTCTCCA+AGG | 0.589107 | 1.1:-1544897 | None:intergenic |
| CAACCACAGAATTGGATAGA+GGG | 0.589884 | 1.1:+1545740 | MS.gene27269:CDS |
| TGCATCTCTTAAGGATGATG+AGG | 0.590655 | 1.1:+1543685 | MS.gene27269:CDS |
| ATGCTAGTACGAGCGATCCA+AGG | 0.594612 | 1.1:+1543510 | MS.gene27269:CDS |
| CATAATTACAGTGAATCTGT+AGG | 0.596692 | 1.1:+1543410 | MS.gene27269:CDS |
| CAATCTGATCCGTGCCTGCA+AGG | 0.597181 | 1.1:+1543806 | MS.gene27269:CDS |
| ACTCTAATGCAAGTGAAACA+TGG | 0.600932 | 1.1:-1545966 | None:intergenic |
| GCCGGGATACTGATATTGAA+AGG | 0.601547 | 1.1:-1543612 | None:intergenic |
| AAGGAGCCTTGGAGAACAGG+AGG | 0.601817 | 1.1:+1544891 | MS.gene27269:CDS |
| AACAACAAGGTCAAATTGCA+GGG | 0.603207 | 1.1:+1545692 | MS.gene27269:CDS |
| CACGCAAACAGCGAAAGTGA+CGG | 0.607447 | 1.1:-1544837 | None:intergenic |
| TCAAAACAATGTCAAAAGGG+AGG | 0.609941 | 1.1:+1543742 | MS.gene27269:CDS |
| TGATCATTGGACAAATGTGA+TGG | 0.613913 | 1.1:+1545774 | MS.gene27269:CDS |
| GAGTTGAATAACTTTGGTGT+TGG | 0.616287 | 1.1:+1545940 | MS.gene27269:CDS |
| GAATTGGTTTATTAATGCGA+GGG | 0.617226 | 1.1:+1545492 | MS.gene27269:CDS |
| GGATGATGAGGCTGAGTGCA+TGG | 0.618918 | 1.1:+1543697 | MS.gene27269:CDS |
| GGTGCGTCTTTGGAAACCAA+TGG | 0.625023 | 1.1:+1545513 | MS.gene27269:CDS |
| GGATTCAGAGAAAATCATGT+TGG | 0.625560 | 1.1:+1545183 | MS.gene27269:CDS |
| AATTACAGTGAATCTGTAGG+AGG | 0.626592 | 1.1:+1543413 | MS.gene27269:CDS |
| TAAAAGGCGTAATCAAACAA+TGG | 0.626825 | 1.1:+1546038 | MS.gene27269:CDS |
| GATTTGCGCATTCATTAGCG+AGG | 0.633287 | 1.1:-1543645 | None:intergenic |
| AAGGTTTACCTCATCCAACA+TGG | 0.638250 | 1.1:-1544119 | None:intergenic |
| AGACGATGATGTTCGAGTGT+GGG | 0.639395 | 1.1:+1545618 | MS.gene27269:CDS |
| TTCATGTGAGCTATCGCCTG+CGG | 0.643410 | 1.1:+1544057 | MS.gene27269:CDS |
| AGGAAGGCATCATTGTCCCA+AGG | 0.659671 | 1.1:-1543592 | None:intergenic |
| TGATCGACATAGCGGAGACG+AGG | 0.663796 | 1.1:-1544919 | None:intergenic |
| AGGAGCCTTGGAGAACAGGA+GGG | 0.665826 | 1.1:+1544892 | MS.gene27269:CDS |
| AATGCTCGAAGAGCCATGCA+CGG | 0.666429 | 1.1:-1545038 | None:intergenic |
| GAGCAAAACGTACAATGCCA+GGG | 0.666769 | 1.1:+1543557 | MS.gene27269:CDS |
| TTGGTGTAATGAGACAAGCT+TGG | 0.669718 | 1.1:+1544974 | MS.gene27269:CDS |
| CAAGCTTGGAGACCTCAGAG+AGG | 0.678920 | 1.1:+1544988 | MS.gene27269:CDS |
| ATATGCTGTCTATTGATCAG+GGG | 0.700074 | 1.1:+1543480 | MS.gene27269:CDS |
| GTTGATGGTGCTGAACAACA+AGG | 0.707575 | 1.1:+1545679 | MS.gene27269:CDS |
| TAAGCTGCTGATCGACATAG+CGG | 0.719259 | 1.1:-1544927 | None:intergenic |
| CTTTCAGGAAGTCCTCTCTG+AGG | 0.726595 | 1.1:-1545000 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGTTTTAAATTTCATT+TGG | + | chr1.1:1545145-1545164 | MS.gene27269:intron | 10.0% |
| !! | AATGAAAAAAAAATGAGTAT+AGG | - | chr1.1:1545083-1545102 | None:intergenic | 15.0% |
| !! | AATGTAAAATGATTTATGTT+TGG | - | chr1.1:1545356-1545375 | None:intergenic | 15.0% |
| !! | ATGAAAAAAAAATGAGTATA+GGG | - | chr1.1:1545082-1545101 | None:intergenic | 15.0% |
| !!! | ACTCATTTTTTTTTCATTAA+TGG | + | chr1.1:1545085-1545104 | MS.gene27269:intron | 15.0% |
| !!! | ATTTATATGTTTTATACGTA+TGG | - | chr1.1:1544174-1544193 | None:intergenic | 15.0% |
| !! | ATCACTATTTAATTCATATC+AGG | + | chr1.1:1545465-1545484 | MS.gene27269:intron | 20.0% |
| !! | ATTTCAAAACAATGTCAAAA+GGG | + | chr1.1:1543739-1543758 | MS.gene27269:CDS | 20.0% |
| !! | TGAAAAAAAAATGAGTATAG+GGG | - | chr1.1:1545081-1545100 | None:intergenic | 20.0% |
| ! | AAAACATTCATAATTGTACC+TGG | - | chr1.1:1545234-1545253 | None:intergenic | 25.0% |
| ! | AAACCTTTACACTGTATTAT+TGG | + | chr1.1:1544135-1544154 | MS.gene27269:intron | 25.0% |
| ! | AACCTCAAATTAATTGTTAG+TGG | + | chr1.1:1544649-1544668 | MS.gene27269:intron | 25.0% |
| ! | AATCCAATAATACAGTGTAA+AGG | - | chr1.1:1544141-1544160 | None:intergenic | 25.0% |
| ! | ACTATTTAATTCATATCAGG+TGG | + | chr1.1:1545468-1545487 | MS.gene27269:intron | 25.0% |
| ! | ATATTACAATAGTGTGTGAA+TGG | + | chr1.1:1544438-1544457 | MS.gene27269:intron | 25.0% |
| ! | CTACAAGTTATAATCAATTC+TGG | - | chr1.1:1544592-1544611 | None:intergenic | 25.0% |
| ! | GATAAATCATCATAAGTTGT+AGG | - | chr1.1:1545919-1545938 | None:intergenic | 25.0% |
| ! | GATTTCAAAACAATGTCAAA+AGG | + | chr1.1:1543738-1543757 | MS.gene27269:CDS | 25.0% |
| ! | GTAATCAGAAGTTTAGTAAA+TGG | - | chr1.1:1544295-1544314 | None:intergenic | 25.0% |
| ! | TTATCAGAGTTGAATAACTT+TGG | + | chr1.1:1545934-1545953 | MS.gene27269:CDS | 25.0% |
| ! | TTGAGGTTAAAAGTCAATTA+TGG | - | chr1.1:1544637-1544656 | None:intergenic | 25.0% |
| !!! | ACAGTTGATTTTAACACATT+TGG | + | chr1.1:1544539-1544558 | MS.gene27269:intron | 25.0% |
| AATATGCTGTCTATTGATCA+GGG | + | chr1.1:1543479-1543498 | MS.gene27269:CDS | 30.0% | |
| ACAGATTCACTGTAATTATG+AGG | - | chr1.1:1543410-1543429 | None:intergenic | 30.0% | |
| ACGATTCAACCAAATAGAAA+GGG | - | chr1.1:1544396-1544415 | None:intergenic | 30.0% | |
| AGGTTAAAAGTCAATTATGG+AGG | - | chr1.1:1544634-1544653 | None:intergenic | 30.0% | |
| ATTTATCTTACCTTTGCATG+AGG | + | chr1.1:1544495-1544514 | MS.gene27269:intron | 30.0% | |
| ATTTGGTATTAGTTATCCGA+AGG | + | chr1.1:1545162-1545181 | MS.gene27269:intron | 30.0% | |
| CAAGTTATAATCAATTCTGG+AGG | - | chr1.1:1544589-1544608 | None:intergenic | 30.0% | |
| CACTGTATTATTGGATTACA+AGG | + | chr1.1:1544144-1544163 | MS.gene27269:intron | 30.0% | |
| CATAATTACAGTGAATCTGT+AGG | + | chr1.1:1543410-1543429 | MS.gene27269:CDS | 30.0% | |
| CCAATGATGACATCAATAAA+AGG | + | chr1.1:1546022-1546041 | MS.gene27269:CDS | 30.0% | |
| CTTAAGGTAATGAGAGTTAA+GGG | - | chr1.1:1543855-1543874 | None:intergenic | 30.0% | |
| GAAATAGTTAATGTCCGAAA+GGG | + | chr1.1:1543896-1543915 | MS.gene27269:CDS | 30.0% | |
| GAAATGTACAAAGAAGAGTT+TGG | + | chr1.1:1545541-1545560 | MS.gene27269:CDS | 30.0% | |
| GACAAGTTAATGAATGTTGA+TGG | + | chr1.1:1545664-1545683 | MS.gene27269:CDS | 30.0% | |
| GCTTAACAACTTTAAGCTTA+TGG | + | chr1.1:1544205-1544224 | MS.gene27269:intron | 30.0% | |
| GTATTCTGATTAAGATCCAA+GGG | + | chr1.1:1545276-1545295 | MS.gene27269:intron | 30.0% | |
| GTTGAAGTTTATGACATCTA+TGG | + | chr1.1:1543445-1543464 | MS.gene27269:CDS | 30.0% | |
| TAACATACACTTTAAGTGTC+AGG | - | chr1.1:1545310-1545329 | None:intergenic | 30.0% | |
| TAGTATGTAACAAACGATTG+AGG | + | chr1.1:1544355-1544374 | MS.gene27269:intron | 30.0% | |
| TAGTCTAACAAATCAGTATC+TGG | - | chr1.1:1546072-1546091 | None:intergenic | 30.0% | |
| TATAATCCACATCCTTCAAT+AGG | + | chr1.1:1543770-1543789 | MS.gene27269:CDS | 30.0% | |
| TCCTTTGAGTCAATTGAATT+TGG | - | chr1.1:1544876-1544895 | None:intergenic | 30.0% | |
| TGAAATAGTTAATGTCCGAA+AGG | + | chr1.1:1543895-1543914 | MS.gene27269:CDS | 30.0% | |
| TGTTCATGTTAAACCTTTGT+TGG | - | chr1.1:1545828-1545847 | None:intergenic | 30.0% | |
| TGTTTGCATTAGAACCATTA+GGG | - | chr1.1:1544033-1544052 | None:intergenic | 30.0% | |
| TTGTTTGCATTAGAACCATT+AGG | - | chr1.1:1544034-1544053 | None:intergenic | 30.0% | |
| ! | AACAAAACTTTTGTCCATGT+TGG | + | chr1.1:1544105-1544124 | MS.gene27269:CDS | 30.0% |
| ! | AGATTTTCCATCAGAATCTT+TGG | - | chr1.1:1543981-1544000 | None:intergenic | 30.0% |
| ! | ATCAATTTTACCTCATGCAA+AGG | - | chr1.1:1544508-1544527 | None:intergenic | 30.0% |
| ! | ATGATTTTCTCTGAATCCTT+CGG | - | chr1.1:1545181-1545200 | None:intergenic | 30.0% |
| ! | CACCACTAACAATTAATTTG+AGG | - | chr1.1:1544654-1544673 | None:intergenic | 30.0% |
| ! | CCTTTTATTGATGTCATCAT+TGG | - | chr1.1:1546025-1546044 | None:intergenic | 30.0% |
| ! | GAATTGGTTTATTAATGCGA+GGG | + | chr1.1:1545492-1545511 | MS.gene27269:CDS | 30.0% |
| ! | TAAAAGGCGTAATCAAACAA+TGG | + | chr1.1:1546038-1546057 | MS.gene27269:CDS | 30.0% |
| ! | TAAGTCATATTCCTGTCTTT+TGG | + | chr1.1:1545429-1545448 | MS.gene27269:intron | 30.0% |
| ! | TGAGGTAAAATTGATTCTGA+AGG | + | chr1.1:1544513-1544532 | MS.gene27269:intron | 30.0% |
| !! | AATGTGATGGATTCTAGAAT+TGG | + | chr1.1:1545787-1545806 | MS.gene27269:CDS | 30.0% |
| !! | ATGTGATGGATTCTAGAATT+GGG | + | chr1.1:1545788-1545807 | MS.gene27269:CDS | 30.0% |
| !!! | ACTTTGTTGTTTTTCCAATC+CGG | - | chr1.1:1543933-1543952 | None:intergenic | 30.0% |
| AACAACAAGGTCAAATTGCA+GGG | + | chr1.1:1545692-1545711 | MS.gene27269:CDS | 35.0% | |
| AATTACAGTGAATCTGTAGG+AGG | + | chr1.1:1543413-1543432 | MS.gene27269:CDS | 35.0% | |
| ACATATTGCCCCTTTCTATT+TGG | + | chr1.1:1544384-1544403 | MS.gene27269:intron | 35.0% | |
| ACTCTAATGCAAGTGAAACA+TGG | - | chr1.1:1545969-1545988 | None:intergenic | 35.0% | |
| AGCAGTGAATTGGTTACAAA+AGG | + | chr1.1:1544331-1544350 | MS.gene27269:intron | 35.0% | |
| ATATGCTGTCTATTGATCAG+GGG | + | chr1.1:1543480-1543499 | MS.gene27269:CDS | 35.0% | |
| CAAAACAATGTCAAAAGGGA+GGG | + | chr1.1:1543743-1543762 | MS.gene27269:CDS | 35.0% | |
| CAATCTATGCAAGTATCTTC+AGG | + | chr1.1:1544007-1544026 | MS.gene27269:CDS | 35.0% | |
| CCTATCTCAATCAACCAAAA+TGG | + | chr1.1:1545868-1545887 | MS.gene27269:CDS | 35.0% | |
| CCTTAACTCTCATTACCTTA+AGG | + | chr1.1:1543853-1543872 | MS.gene27269:CDS | 35.0% | |
| CCTTAAGGTAATGAGAGTTA+AGG | - | chr1.1:1543856-1543875 | None:intergenic | 35.0% | |
| CGATTCAACCAAATAGAAAG+GGG | - | chr1.1:1544395-1544414 | None:intergenic | 35.0% | |
| CGTATTCTGATTAAGATCCA+AGG | + | chr1.1:1545275-1545294 | MS.gene27269:intron | 35.0% | |
| CTTCAATAGGCCTTAATGAA+GGG | + | chr1.1:1543783-1543802 | MS.gene27269:CDS | 35.0% | |
| GAATATGCTGTCTATTGATC+AGG | + | chr1.1:1543478-1543497 | MS.gene27269:CDS | 35.0% | |
| GACGATTCAACCAAATAGAA+AGG | - | chr1.1:1544397-1544416 | None:intergenic | 35.0% | |
| GGATACTGATATTGAAAGGA+AGG | - | chr1.1:1543611-1543630 | None:intergenic | 35.0% | |
| GGATTCAAAGTAGTGATCAT+TGG | + | chr1.1:1545761-1545780 | MS.gene27269:CDS | 35.0% | |
| GGATTCAGAGAAAATCATGT+TGG | + | chr1.1:1545183-1545202 | MS.gene27269:CDS | 35.0% | |
| TCAAAACAATGTCAAAAGGG+AGG | + | chr1.1:1543742-1543761 | MS.gene27269:CDS | 35.0% | |
| TCAATCAACCAAAATGGTGA+TGG | + | chr1.1:1545874-1545893 | MS.gene27269:CDS | 35.0% | |
| TCATAATTGTACCTGGTTTC+TGG | - | chr1.1:1545227-1545246 | None:intergenic | 35.0% | |
| TCCTTTCAATATCAGTATCC+CGG | + | chr1.1:1543611-1543630 | MS.gene27269:CDS | 35.0% | |
| TGATCATTGGACAAATGTGA+TGG | + | chr1.1:1545774-1545793 | MS.gene27269:CDS | 35.0% | |
| TTGTACATTTCTTCGACCAT+TGG | - | chr1.1:1545532-1545551 | None:intergenic | 35.0% | |
| TTTCACTTGCATTAGAGTTG+AGG | + | chr1.1:1545971-1545990 | MS.gene27269:CDS | 35.0% | |
| ! | CAAAGAAGAGTTTGGTGATT+CGG | + | chr1.1:1545549-1545568 | MS.gene27269:CDS | 35.0% |
| ! | CGAATTGGTTTATTAATGCG+AGG | + | chr1.1:1545491-1545510 | MS.gene27269:CDS | 35.0% |
| ! | GAGATAGGTGGATTTGAATA+AGG | - | chr1.1:1545856-1545875 | None:intergenic | 35.0% |
| ! | GAGTTGAATAACTTTGGTGT+TGG | + | chr1.1:1545940-1545959 | MS.gene27269:CDS | 35.0% |
| ! | GCATTTGATGACAGTATTGT+CGG | - | chr1.1:1544735-1544754 | None:intergenic | 35.0% |
| ! | GCCAAATTCAATTGACTCAA+AGG | + | chr1.1:1544872-1544891 | MS.gene27269:CDS | 35.0% |
| ! | TCTAGAATTGGGAAAATGCA+AGG | + | chr1.1:1545799-1545818 | MS.gene27269:CDS | 35.0% |
| ! | TGTTGTGTCATCTTTTGACA+TGG | + | chr1.1:1544759-1544778 | MS.gene27269:CDS | 35.0% |
| !! | AACTCTGAAAGTGATGGATT+TGG | + | chr1.1:1545994-1546013 | MS.gene27269:CDS | 35.0% |
| !! | TTGAATAACTTTGGTGTTGG+TGG | + | chr1.1:1545943-1545962 | MS.gene27269:CDS | 35.0% |
| !! | TTTTGGTTGATTGAGATAGG+TGG | - | chr1.1:1545868-1545887 | None:intergenic | 35.0% |
| !!! | CCATTTTGGTTGATTGAGAT+AGG | - | chr1.1:1545871-1545890 | None:intergenic | 35.0% |
| AAATGCAAGGTGACCAACAA+AGG | + | chr1.1:1545812-1545831 | MS.gene27269:CDS | 40.0% | |
| AAGGTTTACCTCATCCAACA+TGG | - | chr1.1:1544122-1544141 | None:intergenic | 40.0% | |
| AATCCCTCTATCCAATTCTG+TGG | - | chr1.1:1545746-1545765 | None:intergenic | 40.0% | |
| AATGAGTATAGGGGAACCTA+CGG | - | chr1.1:1545072-1545091 | None:intergenic | 40.0% | |
| ACAAACTCGTGCAACAAATG+TGG | - | chr1.1:1546138-1546157 | None:intergenic | 40.0% | |
| ATCATGTTGGCAAGACAAAC+AGG | + | chr1.1:1545196-1545215 | MS.gene27269:CDS | 40.0% | |
| ATTCATATCAGGTGGCGAAT+TGG | + | chr1.1:1545476-1545495 | MS.gene27269:intron | 40.0% | |
| CAAACTCGTGCAACAAATGT+GGG | - | chr1.1:1546137-1546156 | None:intergenic | 40.0% | |
| CAACCACAGAATTGGATAGA+GGG | + | chr1.1:1545740-1545759 | MS.gene27269:CDS | 40.0% | |
| CAGTAGCAATAGCAGTGAAT+TGG | + | chr1.1:1544321-1544340 | MS.gene27269:intron | 40.0% | |
| CCTTCAATAGGCCTTAATGA+AGG | + | chr1.1:1543782-1543801 | MS.gene27269:CDS | 40.0% | |
| CCTTCATTAAGGCCTATTGA+AGG | - | chr1.1:1543785-1543804 | None:intergenic | 40.0% | |
| CGCAAATCTCAAACTTGAAG+GGG | + | chr1.1:1543660-1543679 | MS.gene27269:CDS | 40.0% | |
| GAACAACAAGGTCAAATTGC+AGG | + | chr1.1:1545691-1545710 | MS.gene27269:CDS | 40.0% | |
| GATCAGATTGCCCTTCATTA+AGG | - | chr1.1:1543796-1543815 | None:intergenic | 40.0% | |
| GATGCTTCCAAAGATTCTGA+TGG | + | chr1.1:1543971-1543990 | MS.gene27269:CDS | 40.0% | |
| GCGCAAATCTCAAACTTGAA+GGG | + | chr1.1:1543659-1543678 | MS.gene27269:CDS | 40.0% | |
| GGAAAGCAACAACACAAGTT+TGG | + | chr1.1:1546108-1546127 | MS.gene27269:CDS | 40.0% | |
| TCAACCACAGAATTGGATAG+AGG | + | chr1.1:1545739-1545758 | MS.gene27269:CDS | 40.0% | |
| TCATCGTCTCTTAGAGCTTT+CGG | - | chr1.1:1545607-1545626 | None:intergenic | 40.0% | |
| TCGAGTGTGGGATGATAAAA+GGG | + | chr1.1:1545630-1545649 | MS.gene27269:CDS | 40.0% | |
| TCTATCCAATTCTGTGGTTG+AGG | - | chr1.1:1545740-1545759 | None:intergenic | 40.0% | |
| TGCATCTCTTAAGGATGATG+AGG | + | chr1.1:1543685-1543704 | MS.gene27269:CDS | 40.0% | |
| TGCGCAAATCTCAAACTTGA+AGG | + | chr1.1:1543658-1543677 | MS.gene27269:CDS | 40.0% | |
| TGTTTGCGTGATGCTATTAG+CGG | + | chr1.1:1544850-1544869 | MS.gene27269:CDS | 40.0% | |
| TTAAGGCCTATTGAAGGATG+TGG | - | chr1.1:1543779-1543798 | None:intergenic | 40.0% | |
| TTCGAGTGTGGGATGATAAA+AGG | + | chr1.1:1545629-1545648 | MS.gene27269:CDS | 40.0% | |
| TTGGTGTAATGAGACAAGCT+TGG | + | chr1.1:1544974-1544993 | MS.gene27269:CDS | 40.0% | |
| ! | ACTTTTGTCCATGTTGGATG+AGG | + | chr1.1:1544111-1544130 | MS.gene27269:CDS | 40.0% |
| ! | CAACAAAGTTTTCGTGATGC+TGG | + | chr1.1:1543944-1543963 | MS.gene27269:CDS | 40.0% |
| ! | TCATCTTTTGACATGGTTGC+TGG | + | chr1.1:1544766-1544785 | MS.gene27269:CDS | 40.0% |
| ! | TTATGCAGCCATCACCATTT+TGG | - | chr1.1:1545885-1545904 | None:intergenic | 40.0% |
| ! | TTGAGGAACTCTGAAAGTGA+TGG | + | chr1.1:1545988-1546007 | MS.gene27269:CDS | 40.0% |
| !! | AAATGGTGATGGCTGCATAA+TGG | + | chr1.1:1545885-1545904 | MS.gene27269:CDS | 40.0% |
| !! | AGTATTGACACAGAGCTTTC+AGG | - | chr1.1:1545018-1545037 | None:intergenic | 40.0% |
| !! | GTGTCAGGTTATTTTACCCT+TGG | - | chr1.1:1545295-1545314 | None:intergenic | 40.0% |
| !! | TGAGAGTTAAGGGCATTGTT+CGG | - | chr1.1:1543845-1543864 | None:intergenic | 40.0% |
| AAGATCCCGAAGAAAACGCT+TGG | - | chr1.1:1543355-1543374 | None:intergenic | 45.0% | |
| AATAAATGCTGTCGTTCCGC+AGG | - | chr1.1:1544076-1544095 | None:intergenic | 45.0% | |
| AATATGACTTAGTGCGCGTC+TGG | - | chr1.1:1545420-1545439 | None:intergenic | 45.0% | |
| AGACGATGATGTTCGAGTGT+GGG | + | chr1.1:1545618-1545637 | MS.gene27269:CDS | 45.0% | |
| AGCAAGAGCAGTGTATGGTT+CGG | - | chr1.1:1544803-1544822 | None:intergenic | 45.0% | |
| ATCCAATTCTGTGGTTGAGG+AGG | - | chr1.1:1545737-1545756 | None:intergenic | 45.0% | |
| ATCCTCCTCAACCACAGAAT+TGG | + | chr1.1:1545732-1545751 | MS.gene27269:CDS | 45.0% | |
| ATGGCATCTTTGTCTTCTGG+AGG | + | chr1.1:1543716-1543735 | MS.gene27269:CDS | 45.0% | |
| CAAAAAGCTCTTCAGCAGCT+TGG | + | chr1.1:1544955-1544974 | MS.gene27269:CDS | 45.0% | |
| CAAGTATCTTCAGGCCCTAA+TGG | + | chr1.1:1544016-1544035 | MS.gene27269:CDS | 45.0% | |
| CGAAAGGGCTTGAAACAAAC+CGG | + | chr1.1:1543911-1543930 | MS.gene27269:CDS | 45.0% | |
| CTTACGCGGAGATGATATCT+GGG | + | chr1.1:1543372-1543391 | MS.gene27269:CDS | 45.0% | |
| GAATAACTGCTGATCCTTGC+AGG | - | chr1.1:1543823-1543842 | None:intergenic | 45.0% | |
| GACTATCACTTCACAGACTC+TGG | + | chr1.1:1546087-1546106 | MS.gene27269:CDS | 45.0% | |
| GAGCAAAACGTACAATGCCA+GGG | + | chr1.1:1543557-1543576 | MS.gene27269:CDS | 45.0% | |
| GATTTGCGCATTCATTAGCG+AGG | - | chr1.1:1543648-1543667 | None:intergenic | 45.0% | |
| GCAAGTAGCAACCAAAAGAC+AGG | - | chr1.1:1545443-1545462 | None:intergenic | 45.0% | |
| GCCGGGATACTGATATTGAA+AGG | - | chr1.1:1543615-1543634 | None:intergenic | 45.0% | |
| TAAGCTGCTGATCGACATAG+CGG | - | chr1.1:1544930-1544949 | None:intergenic | 45.0% | |
| TCATTACCTTAAGGCAGCAC+AGG | + | chr1.1:1543862-1543881 | MS.gene27269:CDS | 45.0% | |
| TCTTACGCGGAGATGATATC+TGG | + | chr1.1:1543371-1543390 | MS.gene27269:CDS | 45.0% | |
| TGCATGGCATCTTTGTCTTC+TGG | + | chr1.1:1543713-1543732 | MS.gene27269:CDS | 45.0% | |
| TGCGGAACGACAGCATTTAT+TGG | + | chr1.1:1544075-1544094 | MS.gene27269:CDS | 45.0% | |
| ! | CAATTGACTCAAAGGAGCCT+TGG | + | chr1.1:1544880-1544899 | MS.gene27269:CDS | 45.0% |
| ! | CGGTTTGTTTCAAGCCCTTT+CGG | - | chr1.1:1543913-1543932 | None:intergenic | 45.0% |
| ! | GTTTTCTTCGGGATCTTACG+CGG | + | chr1.1:1543358-1543377 | MS.gene27269:CDS | 45.0% |
| ! | TCCGAACCAAGCGTTTTCTT+CGG | + | chr1.1:1543346-1543365 | MS.gene27269:CDS | 45.0% |
| ! | TTTGACATGGTTGCTGGTTG+CGG | + | chr1.1:1544772-1544791 | MS.gene27269:CDS | 45.0% |
| !! | GTTGATGGTGCTGAACAACA+AGG | + | chr1.1:1545679-1545698 | MS.gene27269:CDS | 45.0% |
| AACAGGCTTGACCAGAAACC+AGG | + | chr1.1:1545213-1545232 | MS.gene27269:CDS | 50.0% | |
| AATGCTCGAAGAGCCATGCA+CGG | - | chr1.1:1545041-1545060 | None:intergenic | 50.0% | |
| ACGCAAACAGCGAAAGTGAC+GGG | - | chr1.1:1544839-1544858 | None:intergenic | 50.0% | |
| AGCGATCCAAGGACACAGTT+CGG | + | chr1.1:1543521-1543540 | MS.gene27269:CDS | 50.0% | |
| ATAGGGGAACCTACGGATGA+AGG | - | chr1.1:1545065-1545084 | None:intergenic | 50.0% | |
| ATGCTAGTACGAGCGATCCA+AGG | + | chr1.1:1543510-1543529 | MS.gene27269:CDS | 50.0% | |
| CACGCAAACAGCGAAAGTGA+CGG | - | chr1.1:1544840-1544859 | None:intergenic | 50.0% | |
| CCCGAAGAAAACGCTTGGTT+CGG | - | chr1.1:1543350-1543369 | None:intergenic | 50.0% | |
| CGAGCAAAACGTACAATGCC+AGG | + | chr1.1:1543556-1543575 | MS.gene27269:CDS | 50.0% | |
| CGAGCATTTCCTTCATCCGT+AGG | + | chr1.1:1545053-1545072 | MS.gene27269:intron | 50.0% | |
| CGCAAAGCAAGAGCAGTGTA+TGG | - | chr1.1:1544808-1544827 | None:intergenic | 50.0% | |
| CTGTGTCAATACTCCGTGCA+TGG | + | chr1.1:1545025-1545044 | MS.gene27269:CDS | 50.0% | |
| CTTTCAGGAAGTCCTCTCTG+AGG | - | chr1.1:1545003-1545022 | None:intergenic | 50.0% | |
| GAAGGGGTCTGCATCTCTTA+AGG | + | chr1.1:1543676-1543695 | MS.gene27269:CDS | 50.0% | |
| GAAGTTCCTGTGCTGCCTTA+AGG | - | chr1.1:1543871-1543890 | None:intergenic | 50.0% | |
| GAGACGATGATGTTCGAGTG+TGG | + | chr1.1:1545617-1545636 | MS.gene27269:CDS | 50.0% | |
| GGGCTTGAAACAAACCGGAT+TGG | + | chr1.1:1543916-1543935 | MS.gene27269:CDS | 50.0% | |
| GTATTCCCTCCTGTTCTCCA+AGG | - | chr1.1:1544900-1544919 | None:intergenic | 50.0% | |
| TAGCGAGGTGAAACTGTTGC+CGG | - | chr1.1:1543633-1543652 | None:intergenic | 50.0% | |
| TCAAAGGAGCCTTGGAGAAC+AGG | + | chr1.1:1544888-1544907 | MS.gene27269:CDS | 50.0% | |
| TGGATCGCTCGTACTAGCAT+TGG | - | chr1.1:1543510-1543529 | None:intergenic | 50.0% | |
| TTCATGTGAGCTATCGCCTG+CGG | + | chr1.1:1544057-1544076 | MS.gene27269:CDS | 50.0% | |
| TTGTCCCAAGGCTAAGAGAC+AGG | - | chr1.1:1543583-1543602 | None:intergenic | 50.0% | |
| ! | ACAGCGAAAGTGACGGGAAA+TGG | - | chr1.1:1544833-1544852 | None:intergenic | 50.0% |
| ! | CCGAACCAAGCGTTTTCTTC+GGG | + | chr1.1:1543347-1543366 | MS.gene27269:CDS | 50.0% |
| ! | GGTGCGTCTTTGGAAACCAA+TGG | + | chr1.1:1545513-1545532 | MS.gene27269:CDS | 50.0% |
| ! | TTAATGCGAGGGTGCGTCTT+TGG | + | chr1.1:1545503-1545522 | MS.gene27269:CDS | 50.0% |
| !! | AGGAAGGCATCATTGTCCCA+AGG | - | chr1.1:1543595-1543614 | None:intergenic | 50.0% |
| AAGGAGCCTTGGAGAACAGG+AGG | + | chr1.1:1544891-1544910 | MS.gene27269:CDS | 55.0% | |
| ACGAGTCCGAACTGTGTCCT+TGG | - | chr1.1:1543530-1543549 | None:intergenic | 55.0% | |
| ACTGCTGATCCTTGCAGGCA+CGG | - | chr1.1:1543818-1543837 | None:intergenic | 55.0% | |
| AGCGAGGTGAAACTGTTGCC+GGG | - | chr1.1:1543632-1543651 | None:intergenic | 55.0% | |
| AGGAGCCTTGGAGAACAGGA+GGG | + | chr1.1:1544892-1544911 | MS.gene27269:CDS | 55.0% | |
| CAAGCTTGGAGACCTCAGAG+AGG | + | chr1.1:1544988-1545007 | MS.gene27269:CDS | 55.0% | |
| CAATCTGATCCGTGCCTGCA+AGG | + | chr1.1:1543806-1543825 | MS.gene27269:CDS | 55.0% | |
| GGATGATGAGGCTGAGTGCA+TGG | + | chr1.1:1543697-1543716 | MS.gene27269:CDS | 55.0% | |
| ! | AGGGCCTGTCTCTTAGCCTT+GGG | + | chr1.1:1543576-1543595 | MS.gene27269:CDS | 55.0% |
| ! | TGATCGACATAGCGGAGACG+AGG | - | chr1.1:1544922-1544941 | None:intergenic | 55.0% |
| CAAGGCTAAGAGACAGGCCC+TGG | - | chr1.1:1543577-1543596 | None:intergenic | 60.0% | |
| CAGGGCCTGTCTCTTAGCCT+TGG | + | chr1.1:1543575-1543594 | MS.gene27269:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 1543341 | 1546164 | 1543341 | ID=MS.gene27269 |
| chr1.1 | mRNA | 1543341 | 1546164 | 1543341 | ID=MS.gene27269.t1;Parent=MS.gene27269 |
| chr1.1 | exon | 1543341 | 1544132 | 1543341 | ID=MS.gene27269.t1.exon1;Parent=MS.gene27269.t1 |
| chr1.1 | CDS | 1543341 | 1544132 | 1543341 | ID=cds.MS.gene27269.t1;Parent=MS.gene27269.t1 |
| chr1.1 | exon | 1544718 | 1545070 | 1544718 | ID=MS.gene27269.t1.exon2;Parent=MS.gene27269.t1 |
| chr1.1 | CDS | 1544718 | 1545070 | 1544718 | ID=cds.MS.gene27269.t1;Parent=MS.gene27269.t1 |
| chr1.1 | exon | 1545174 | 1545234 | 1545174 | ID=MS.gene27269.t1.exon3;Parent=MS.gene27269.t1 |
| chr1.1 | CDS | 1545174 | 1545234 | 1545174 | ID=cds.MS.gene27269.t1;Parent=MS.gene27269.t1 |
| chr1.1 | exon | 1545487 | 1546164 | 1545487 | ID=MS.gene27269.t1.exon4;Parent=MS.gene27269.t1 |
| chr1.1 | CDS | 1545487 | 1546164 | 1545487 | ID=cds.MS.gene27269.t1;Parent=MS.gene27269.t1 |
| Gene Sequence |
| Protein sequence |
