Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22419.t1 | XP_024626322.1 | 78 | 490 | 4 | 1 | 1 | 386 | 1 | 490 | 1.20E-199 | 705.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22419.t1 | A0A396HB66 | 78.0 | 490 | 4 | 1 | 1 | 386 | 1 | 490 | 8.7e-200 | 705.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene22419 | 0.820129 | 8.07E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene22419 | 0.810967 | 8.86E-51 | -1.69E-46 |
| MS.gene049499 | MS.gene22419 | 0.813116 | 3.01E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene22419 | 0.807816 | 4.20E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene22419 | 0.809977 | 1.45E-50 | -1.69E-46 |
| MS.gene050273 | MS.gene22419 | 0.82322 | 1.56E-53 | -1.69E-46 |
| MS.gene050414 | MS.gene22419 | 0.817074 | 3.98E-52 | -1.69E-46 |
| MS.gene050646 | MS.gene22419 | 0.845854 | 3.13E-59 | -1.69E-46 |
| MS.gene051201 | MS.gene22419 | 0.804802 | 1.81E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene22419 | 0.802511 | 5.42E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene22419 | 0.816102 | 6.58E-52 | -1.69E-46 |
| MS.gene052037 | MS.gene22419 | 0.81282 | 3.50E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene22419 | 0.835127 | 2.01E-56 | -1.69E-46 |
| MS.gene052463 | MS.gene22419 | 0.866602 | 2.53E-65 | -1.69E-46 |
| MS.gene052516 | MS.gene22419 | 0.816406 | 5.62E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene22419 | 0.815806 | 7.66E-52 | -1.69E-46 |
| MS.gene052932 | MS.gene22419 | 0.806184 | 9.30E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene22419 | 0.808668 | 2.77E-50 | -1.69E-46 |
| MS.gene053456 | MS.gene22419 | 0.803517 | 3.36E-49 | -1.69E-46 |
| MS.gene053620 | MS.gene22419 | 0.815136 | 1.08E-51 | -1.69E-46 |
| MS.gene05423 | MS.gene22419 | 0.804748 | 1.86E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene22419 | 0.812321 | 4.50E-51 | -1.69E-46 |
| MS.gene05458 | MS.gene22419 | 0.821627 | 3.65E-53 | -1.69E-46 |
| MS.gene054651 | MS.gene22419 | 0.824211 | 9.12E-54 | -1.69E-46 |
| MS.gene054709 | MS.gene22419 | 0.812716 | 3.69E-51 | -1.69E-46 |
| MS.gene055228 | MS.gene22419 | 0.801455 | 8.93E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene22419 | 0.841131 | 5.72E-58 | -1.69E-46 |
| MS.gene055724 | MS.gene22419 | 0.829691 | 4.47E-55 | -1.69E-46 |
| MS.gene055864 | MS.gene22419 | 0.80523 | 1.48E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene22419 | 0.819321 | 1.23E-52 | -1.69E-46 |
| MS.gene056699 | MS.gene22419 | 0.824602 | 7.39E-54 | -1.69E-46 |
| MS.gene056779 | MS.gene22419 | 0.801765 | 7.71E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene22419 | 0.804651 | 1.95E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene22419 | 0.812127 | 4.96E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene22419 | 0.804343 | 2.26E-49 | -1.69E-46 |
| MS.gene057371 | MS.gene22419 | 0.802883 | 4.54E-49 | -1.69E-46 |
| MS.gene057919 | MS.gene22419 | 0.822132 | 2.79E-53 | -1.69E-46 |
| MS.gene058010 | MS.gene22419 | 0.805665 | 1.20E-49 | -1.69E-46 |
| MS.gene058279 | MS.gene22419 | 0.809837 | 1.55E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene22419 | 0.806983 | 6.31E-50 | -1.69E-46 |
| MS.gene058647 | MS.gene22419 | 0.800852 | 1.19E-48 | -1.69E-46 |
| MS.gene059439 | MS.gene22419 | 0.823993 | 1.03E-53 | -1.69E-46 |
| MS.gene059965 | MS.gene22419 | 0.823692 | 1.21E-53 | -1.69E-46 |
| MS.gene060122 | MS.gene22419 | -0.819532 | 1.11E-52 | -1.69E-46 |
| MS.gene060125 | MS.gene22419 | -0.801614 | 8.29E-49 | -1.69E-46 |
| MS.gene060373 | MS.gene22419 | 0.812833 | 3.47E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene22419 | 0.830179 | 3.40E-55 | -1.69E-46 |
| MS.gene060932 | MS.gene22419 | 0.850539 | 1.59E-60 | -1.69E-46 |
| MS.gene060937 | MS.gene22419 | 0.810302 | 1.23E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene22419 | 0.829988 | 3.78E-55 | -1.69E-46 |
| MS.gene061188 | MS.gene22419 | 0.804277 | 2.33E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22419.t1 | MTR_7g101730 | 98.522 | 203 | 3 | 0 | 182 | 384 | 286 | 488 | 2.88e-141 | 414 |
| MS.gene22419.t1 | MTR_7g101730 | 97.688 | 173 | 4 | 0 | 1 | 173 | 1 | 173 | 1.47e-88 | 279 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22419.t1 | AT2G37035 | 53.917 | 217 | 65 | 1 | 170 | 386 | 252 | 433 | 2.23e-73 | 235 |
| MS.gene22419.t1 | AT2G37035 | 44.156 | 154 | 70 | 2 | 22 | 173 | 30 | 169 | 8.74e-23 | 99.8 |
Find 89 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATATTCTCTGTGGATTTC+TGG | 0.061482 | 7.3:-11654487 | MS.gene22419:CDS |
| TTGTTGCTGATAATGGAATT+AGG | 0.178046 | 7.3:-11655168 | MS.gene22419:CDS |
| GTTATGTCGCCTTGGGTTAC+TGG | 0.193809 | 7.3:-11654572 | MS.gene22419:CDS |
| TCCGATCTTGTTGCTGATAA+TGG | 0.209575 | 7.3:-11655175 | MS.gene22419:CDS |
| AATGGTAGCGTTGTTGATTT+TGG | 0.215077 | 7.3:-11655223 | MS.gene22419:CDS |
| TTTGGTTACATGGTTTCTTA+TGG | 0.235123 | 7.3:-11654525 | MS.gene22419:CDS |
| AATTCCAAAGCTCCGGTTAA+TGG | 0.284429 | 7.3:-11655241 | MS.gene22419:CDS |
| GTTCAACTACTGGTGTGGTT+TGG | 0.305022 | 7.3:-11654760 | MS.gene22419:CDS |
| CAAGGCGACATAACCGAAAA+TGG | 0.306788 | 7.3:+11654581 | None:intergenic |
| TTCAACTACTGGTGTGGTTT+GGG | 0.319340 | 7.3:-11654759 | MS.gene22419:CDS |
| TGTTGCTGATAATGGAATTA+GGG | 0.322052 | 7.3:-11655167 | MS.gene22419:CDS |
| TGTGGATTTCTGGGTTGCTT+TGG | 0.322485 | 7.3:-11654477 | MS.gene22419:CDS |
| AATCAACAGGGTAGGAGGTT+TGG | 0.323638 | 7.3:-11654215 | MS.gene22419:CDS |
| CTTTCCCGTCTTGACCTTGC+CGG | 0.324595 | 7.3:-11655436 | MS.gene22419:CDS |
| TATATTCTCTGTGGATTTCT+GGG | 0.335772 | 7.3:-11654486 | MS.gene22419:CDS |
| TACCATGGAGGTTTACTTCA+TGG | 0.347990 | 7.3:-11654282 | MS.gene22419:CDS |
| TGACACAGCTTGTGGGAATA+TGG | 0.355268 | 7.3:-11654667 | MS.gene22419:CDS |
| AATCCCGAATCCAAAGAAAA+TGG | 0.355440 | 7.3:+11655199 | None:intergenic |
| ATCAACAGGGTAGGAGGTTT+GGG | 0.356159 | 7.3:-11654214 | MS.gene22419:CDS |
| AAGAGAAGATTAAGAGAGAT+AGG | 0.357433 | 7.3:+11655533 | None:intergenic |
| AGCAGCGTTAACAGCGTTAC+CGG | 0.363800 | 7.3:+11655417 | None:intergenic |
| TTTGATAAGGTGGGCTGTTA+GGG | 0.367104 | 7.3:-11654696 | MS.gene22419:CDS |
| TCAGTTGTTAATGATCTTGT+AGG | 0.382451 | 7.3:-11654791 | MS.gene22419:CDS |
| GGATTTCTGGGTTGCTTTGG+AGG | 0.384827 | 7.3:-11654474 | MS.gene22419:CDS |
| CGGAGAAGAAATCATCATCT+AGG | 0.397067 | 7.3:+11655299 | None:intergenic |
| GCTACCATTAACCGGAGCTT+TGG | 0.398706 | 7.3:+11655237 | None:intergenic |
| GAGTAGGGATGCCAATCAAC+AGG | 0.400674 | 7.3:-11654228 | MS.gene22419:CDS |
| CGACGACGGCGAAGAGCAGC+TGG | 0.432165 | 7.3:+11655352 | None:intergenic |
| CGTTCTTTAAGCTATTTGTT+CGG | 0.433372 | 7.3:-11654616 | MS.gene22419:CDS |
| CTAGATGATGATTTCTTCTC+CGG | 0.439591 | 7.3:-11655298 | MS.gene22419:CDS |
| TGCTTGGAAGCTGTGCTTTG+TGG | 0.441214 | 7.3:-11654368 | MS.gene22419:CDS |
| TTTCGCACCGTCGTTGAAAA+CGG | 0.444607 | 7.3:-11655511 | MS.gene22419:CDS |
| AGGTTTACTTCATGGTTGCT+TGG | 0.460321 | 7.3:-11654274 | MS.gene22419:CDS |
| AGATTAAGAGAGATAGGAAA+AGG | 0.472898 | 7.3:+11655539 | None:intergenic |
| CTGCGATGAGCGACCAACTA+CGG | 0.472986 | 7.3:-11655636 | None:intergenic |
| GTTTGGGCAGAGGGAAATTG+AGG | 0.473811 | 7.3:-11654198 | MS.gene22419:CDS |
| GGGTAGGAGGTTTGGGCAGA+GGG | 0.480015 | 7.3:-11654207 | MS.gene22419:CDS |
| AGGGTAGGAGGTTTGGGCAG+AGG | 0.486226 | 7.3:-11654208 | MS.gene22419:CDS |
| TCAACAACGCTACCATTAAC+CGG | 0.488618 | 7.3:+11655229 | None:intergenic |
| AGTAAGGAGATTGTGAAGGA+AGG | 0.489890 | 7.3:-11654437 | MS.gene22419:CDS |
| AAACCTCCTACCCTGTTGAT+TGG | 0.504079 | 7.3:+11654217 | None:intergenic |
| GGAAGGTTTAGTTCAACTAC+TGG | 0.504708 | 7.3:-11654770 | MS.gene22419:CDS |
| CATGGTAGACTGAAACATCT+TGG | 0.507976 | 7.3:+11654298 | None:intergenic |
| ACGGGAAAGAAGAGATTTAA+CGG | 0.513314 | 7.3:+11655450 | None:intergenic |
| CGTTTCATTTCCTTCGTCGA+CGG | 0.515738 | 7.3:-11655481 | MS.gene22419:CDS |
| ACACGAGTGAGATGAAGAAA+AGG | 0.516134 | 7.3:+11655328 | None:intergenic |
| TGCTTTGTGGATCGTTAATG+AGG | 0.519695 | 7.3:-11654355 | MS.gene22419:CDS |
| GTAAGGAGATTGTGAAGGAA+GGG | 0.524150 | 7.3:-11654436 | MS.gene22419:CDS |
| GAAATTGAGGGCTTAATCGA+TGG | 0.529867 | 7.3:-11654185 | MS.gene22419:CDS |
| CGGCGAAGAGCAGCTGGAGA+AGG | 0.529976 | 7.3:+11655358 | None:intergenic |
| GCACGTTGTGTAACCGTAGT+TGG | 0.530006 | 7.3:+11655623 | None:intergenic |
| TTTCTTCATCTCACTCGTGT+CGG | 0.535665 | 7.3:-11655325 | MS.gene22419:CDS |
| AGGTAGTAAGGAGATTGTGA+AGG | 0.545123 | 7.3:-11654441 | MS.gene22419:CDS |
| TTTGGGCAGAGGGAAATTGA+GGG | 0.547206 | 7.3:-11654197 | MS.gene22419:CDS |
| TGGATCGAATTCCAAAGCTC+CGG | 0.549733 | 7.3:-11655248 | MS.gene22419:CDS |
| ACTACTGGTGTGGTTTGGGA+TGG | 0.550541 | 7.3:-11654755 | MS.gene22419:CDS |
| CAGAAAAGCCTGATAAAACA+TGG | 0.551031 | 7.3:+11654397 | None:intergenic |
| GGATGCAGTGACACAGCTTG+TGG | 0.553261 | 7.3:-11654675 | MS.gene22419:CDS |
| GAAAGAAGAGATTTAACGGC+GGG | 0.553372 | 7.3:+11655454 | None:intergenic |
| GATGCAGTGACACAGCTTGT+GGG | 0.555205 | 7.3:-11654674 | MS.gene22419:CDS |
| TCCATTATCAGCAACAAGAT+CGG | 0.556064 | 7.3:+11655174 | None:intergenic |
| TTCTCCGGTGATGATGATGA+TGG | 0.557902 | 7.3:-11655283 | MS.gene22419:CDS |
| AAGGAATGTGAAGAGATTTG+AGG | 0.560449 | 7.3:+11655558 | None:intergenic |
| GTTACCGGCAAGGTCAAGAC+GGG | 0.567998 | 7.3:+11655432 | None:intergenic |
| GTTTAGTTCAACTACTGGTG+TGG | 0.574767 | 7.3:-11654765 | MS.gene22419:CDS |
| ATGCCAATCAACAGGGTAGG+AGG | 0.575686 | 7.3:-11654220 | MS.gene22419:CDS |
| GAAACTGAGAAGAACGTTGA+CGG | 0.578836 | 7.3:+11655383 | None:intergenic |
| CCGTCCATCATCATCATCAC+CGG | 0.581846 | 7.3:+11655279 | None:intergenic |
| CGTTAACAGCGTTACCGGCA+AGG | 0.583355 | 7.3:+11655422 | None:intergenic |
| GGAGAAGAAATCATCATCTA+GGG | 0.584514 | 7.3:+11655300 | None:intergenic |
| CGTTACCGGCAAGGTCAAGA+CGG | 0.585212 | 7.3:+11655431 | None:intergenic |
| TTGTTAATGATCTTGTAGGA+AGG | 0.591111 | 7.3:-11654787 | MS.gene22419:CDS |
| GGCGGGATCGCCGTCGACGA+AGG | 0.591405 | 7.3:+11655471 | None:intergenic |
| AAATTGAGGGCTTAATCGAT+GGG | 0.595021 | 7.3:-11654184 | MS.gene22419:CDS |
| AACCATGAAGTAAACCTCCA+TGG | 0.610271 | 7.3:+11654280 | None:intergenic |
| TTCTCAAAACCAGTAACCCA+AGG | 0.613465 | 7.3:+11654563 | None:intergenic |
| GGGATGCCAATCAACAGGGT+AGG | 0.627186 | 7.3:-11654223 | MS.gene22419:CDS |
| TTTGTGGATCGTTAATGAGG+TGG | 0.632821 | 7.3:-11654352 | MS.gene22419:CDS |
| GAGATTTGAGGTGAATGATG+AGG | 0.634010 | 7.3:+11655570 | None:intergenic |
| CAAGATGTTTCAGTCTACCA+TGG | 0.640369 | 7.3:-11654297 | MS.gene22419:CDS |
| TGTGACGTTTATATTCTCTG+TGG | 0.646145 | 7.3:-11654495 | MS.gene22419:CDS |
| AGGTTTGAAGAGGATTTCTG+CGG | 0.648624 | 7.3:-11654723 | MS.gene22419:CDS |
| GATGAAGAAAAGGACGACGA+CGG | 0.656060 | 7.3:+11655338 | None:intergenic |
| AGTAGGGATGCCAATCAACA+GGG | 0.665230 | 7.3:-11654227 | MS.gene22419:CDS |
| CCGGTGATGATGATGATGGA+CGG | 0.666741 | 7.3:-11655279 | MS.gene22419:CDS |
| TTGTTTGAGAAGTTGTGCAG+TGG | 0.672793 | 7.3:+11655597 | None:intergenic |
| GATGTTTCAGTCTACCATGG+AGG | 0.685865 | 7.3:-11654294 | MS.gene22419:CDS |
| GACGAAGGAAATGAAACGTG+AGG | 0.707332 | 7.3:+11655486 | None:intergenic |
| GGAAAGAAGAGATTTAACGG+CGG | 0.721458 | 7.3:+11655453 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTCAAATATTTGTGAA+TGG | - | chr7.3:11654865-11654884 | MS.gene22419:intron | 20.0% |
| AAAGAAGAAGAAGAAGAAGA+GGG | - | chr7.3:11654778-11654797 | MS.gene22419:CDS | 30.0% | |
| AAGAGAAGATTAAGAGAGAT+AGG | + | chr7.3:11654276-11654295 | None:intergenic | 30.0% | |
| AGATTAAGAGAGATAGGAAA+AGG | + | chr7.3:11654270-11654289 | None:intergenic | 30.0% | |
| CGTTCTTTAAGCTATTTGTT+CGG | - | chr7.3:11655190-11655209 | MS.gene22419:CDS | 30.0% | |
| GTTACATATTCGTGTGTATT+AGG | - | chr7.3:11654979-11654998 | MS.gene22419:intron | 30.0% | |
| TATATTCTCTGTGGATTTCT+GGG | - | chr7.3:11655320-11655339 | MS.gene22419:CDS | 30.0% | |
| TCAGTTGTTAATGATCTTGT+AGG | - | chr7.3:11655015-11655034 | MS.gene22419:intron | 30.0% | |
| TTATATTCTCTGTGGATTTC+TGG | - | chr7.3:11655319-11655338 | MS.gene22419:CDS | 30.0% | |
| TTGTTAATGATCTTGTAGGA+AGG | - | chr7.3:11655019-11655038 | MS.gene22419:intron | 30.0% | |
| TTTGGTTACATGGTTTCTTA+TGG | - | chr7.3:11655281-11655300 | MS.gene22419:CDS | 30.0% | |
| ! | ACGTTGTTCTTTGTTCTTTT+GGG | - | chr7.3:11654913-11654932 | MS.gene22419:intron | 30.0% |
| ! | ATGGTATTTTGCTGAAATTG+AGG | - | chr7.3:11655158-11655177 | MS.gene22419:CDS | 30.0% |
| ! | GTTTTCAATTAGGTTTGAAG+AGG | - | chr7.3:11655073-11655092 | MS.gene22419:intron | 30.0% |
| !! | TGATTTTGGTCCATTTTCTT+TGG | - | chr7.3:11654597-11654616 | MS.gene22419:CDS | 30.0% |
| !! | TGTTGCTGATAATGGAATTA+GGG | - | chr7.3:11654639-11654658 | MS.gene22419:CDS | 30.0% |
| !! | TTATTTTGTGGCTAAGAGTA+GGG | - | chr7.3:11655563-11655582 | MS.gene22419:CDS | 30.0% |
| !! | TTGTTGCTGATAATGGAATT+AGG | - | chr7.3:11654638-11654657 | MS.gene22419:CDS | 30.0% |
| !!! | GTTGAAATTGATGCCATTTT+CGG | - | chr7.3:11655212-11655231 | MS.gene22419:CDS | 30.0% |
| !!! | TTGGCTTGTGTTTTATTTTG+TGG | - | chr7.3:11655551-11655570 | MS.gene22419:CDS | 30.0% |
| !!! | TTTATTTTGTGGCTAAGAGT+AGG | - | chr7.3:11655562-11655581 | MS.gene22419:CDS | 30.0% |
| AAATTGAGGGCTTAATCGAT+GGG | - | chr7.3:11655622-11655641 | MS.gene22419:CDS | 35.0% | |
| AAGAAGGAGAAGAGTGATTT+GGG | - | chr7.3:11654811-11654830 | MS.gene22419:intron | 35.0% | |
| AAGGAATGTGAAGAGATTTG+AGG | + | chr7.3:11654251-11654270 | None:intergenic | 35.0% | |
| AATCCCGAATCCAAAGAAAA+TGG | + | chr7.3:11654610-11654629 | None:intergenic | 35.0% | |
| ACGGGAAAGAAGAGATTTAA+CGG | + | chr7.3:11654359-11654378 | None:intergenic | 35.0% | |
| ATTATCTGTGGCTTATGGAT+GGG | - | chr7.3:11654939-11654958 | MS.gene22419:intron | 35.0% | |
| CAGAAAAGCCTGATAAAACA+TGG | + | chr7.3:11655412-11655431 | None:intergenic | 35.0% | |
| CTAGATGATGATTTCTTCTC+CGG | - | chr7.3:11654508-11654527 | MS.gene22419:CDS | 35.0% | |
| GAAAGAAGAAGAAGAAGAAG+AGG | - | chr7.3:11654777-11654796 | MS.gene22419:CDS | 35.0% | |
| GGAGAAGAAATCATCATCTA+GGG | + | chr7.3:11654509-11654528 | None:intergenic | 35.0% | |
| TCCATTATCAGCAACAAGAT+CGG | + | chr7.3:11654635-11654654 | None:intergenic | 35.0% | |
| TGTGACGTTTATATTCTCTG+TGG | - | chr7.3:11655311-11655330 | MS.gene22419:CDS | 35.0% | |
| ! | ATCGTTAATGAGGTGGTTTT+TGG | - | chr7.3:11655461-11655480 | MS.gene22419:CDS | 35.0% |
| ! | GACGTTGTTCTTTGTTCTTT+TGG | - | chr7.3:11654912-11654931 | MS.gene22419:intron | 35.0% |
| ! | GGCTTTTCTGATTAAATGCT+TGG | - | chr7.3:11655422-11655441 | MS.gene22419:CDS | 35.0% |
| ! | GTTGTCTTCCATGTTTTATC+AGG | - | chr7.3:11655401-11655420 | MS.gene22419:CDS | 35.0% |
| ! | TGGTCCATTTTCTTTGGATT+CGG | - | chr7.3:11654603-11654622 | MS.gene22419:CDS | 35.0% |
| !! | GTTTGGGATGGTTTTCAATT+AGG | - | chr7.3:11655063-11655082 | MS.gene22419:intron | 35.0% |
| !! | GTTTTTCAGATTGTTCGTTC+TGG | - | chr7.3:11654661-11654680 | MS.gene22419:CDS | 35.0% |
| !!! | AATGGTAGCGTTGTTGATTT+TGG | - | chr7.3:11654583-11654602 | MS.gene22419:CDS | 35.0% |
| !!! | GTTTTGAGAAGGAGATTTCT+GGG | - | chr7.3:11655256-11655275 | MS.gene22419:CDS | 35.0% |
| !!! | TCTTTTGGGTTCATTATCTG+TGG | - | chr7.3:11654927-11654946 | MS.gene22419:intron | 35.0% |
| !!! | TTTCTGCGGTTGTTTTGATA+AGG | - | chr7.3:11655097-11655116 | MS.gene22419:intron | 35.0% |
| !!! | TTTCTGGGTTTTTGGTTACA+TGG | - | chr7.3:11655271-11655290 | MS.gene22419:CDS | 35.0% |
| AACCATGAAGTAAACCTCCA+TGG | + | chr7.3:11655529-11655548 | None:intergenic | 40.0% | |
| AATTCCAAAGCTCCGGTTAA+TGG | - | chr7.3:11654565-11654584 | MS.gene22419:CDS | 40.0% | |
| ACACGAGTGAGATGAAGAAA+AGG | + | chr7.3:11654481-11654500 | None:intergenic | 40.0% | |
| AGAAGGAGAAGAGTGATTTG+GGG | - | chr7.3:11654812-11654831 | MS.gene22419:intron | 40.0% | |
| AGGTAGTAAGGAGATTGTGA+AGG | - | chr7.3:11655365-11655384 | MS.gene22419:CDS | 40.0% | |
| AGGTTTACTTCATGGTTGCT+TGG | - | chr7.3:11655532-11655551 | MS.gene22419:CDS | 40.0% | |
| AGGTTTGAAGAGGATTTCTG+CGG | - | chr7.3:11655083-11655102 | MS.gene22419:intron | 40.0% | |
| AGTAAGGAGATTGTGAAGGA+AGG | - | chr7.3:11655369-11655388 | MS.gene22419:CDS | 40.0% | |
| CAAGATGTTTCAGTCTACCA+TGG | - | chr7.3:11655509-11655528 | MS.gene22419:CDS | 40.0% | |
| CATGGTAGACTGAAACATCT+TGG | + | chr7.3:11655511-11655530 | None:intergenic | 40.0% | |
| CATTATCTGTGGCTTATGGA+TGG | - | chr7.3:11654938-11654957 | MS.gene22419:intron | 40.0% | |
| CGGAGAAGAAATCATCATCT+AGG | + | chr7.3:11654510-11654529 | None:intergenic | 40.0% | |
| GAAACTGAGAAGAACGTTGA+CGG | + | chr7.3:11654426-11654445 | None:intergenic | 40.0% | |
| GAAAGAAGAGATTTAACGGC+GGG | + | chr7.3:11654355-11654374 | None:intergenic | 40.0% | |
| GAAATTGAGGGCTTAATCGA+TGG | - | chr7.3:11655621-11655640 | MS.gene22419:CDS | 40.0% | |
| GAAGAAGGAGAAGAGTGATT+TGG | - | chr7.3:11654810-11654829 | MS.gene22419:intron | 40.0% | |
| GGAAAGAAGAGATTTAACGG+CGG | + | chr7.3:11654356-11654375 | None:intergenic | 40.0% | |
| GGCTTATGGATGGGTAATTA+TGG | - | chr7.3:11654948-11654967 | MS.gene22419:intron | 40.0% | |
| GGTTCATTATCTGTGGCTTA+TGG | - | chr7.3:11654934-11654953 | MS.gene22419:intron | 40.0% | |
| GTAAGGAGATTGTGAAGGAA+GGG | - | chr7.3:11655370-11655389 | MS.gene22419:CDS | 40.0% | |
| TACCATGGAGGTTTACTTCA+TGG | - | chr7.3:11655524-11655543 | MS.gene22419:CDS | 40.0% | |
| TCAACAACGCTACCATTAAC+CGG | + | chr7.3:11654580-11654599 | None:intergenic | 40.0% | |
| TCCGATCTTGTTGCTGATAA+TGG | - | chr7.3:11654631-11654650 | MS.gene22419:CDS | 40.0% | |
| TGCTTTGTGGATCGTTAATG+AGG | - | chr7.3:11655451-11655470 | MS.gene22419:CDS | 40.0% | |
| TTCAACTACTGGTGTGGTTT+GGG | - | chr7.3:11655047-11655066 | MS.gene22419:intron | 40.0% | |
| TTCTCAAAACCAGTAACCCA+AGG | + | chr7.3:11655246-11655265 | None:intergenic | 40.0% | |
| TTGTTTGAGAAGTTGTGCAG+TGG | + | chr7.3:11654212-11654231 | None:intergenic | 40.0% | |
| TTTCTTCATCTCACTCGTGT+CGG | - | chr7.3:11654481-11654500 | MS.gene22419:CDS | 40.0% | |
| TTTGTGGATCGTTAATGAGG+TGG | - | chr7.3:11655454-11655473 | MS.gene22419:CDS | 40.0% | |
| ! | ATTTTCGGTTATGTCGCCTT+GGG | - | chr7.3:11655227-11655246 | MS.gene22419:CDS | 40.0% |
| ! | GAGATTTGAGGTGAATGATG+AGG | + | chr7.3:11654239-11654258 | None:intergenic | 40.0% |
| ! | GGAAGGTTTAGTTCAACTAC+TGG | - | chr7.3:11655036-11655055 | MS.gene22419:intron | 40.0% |
| ! | GGTCCATTTTCTTTGGATTC+GGG | - | chr7.3:11654604-11654623 | MS.gene22419:CDS | 40.0% |
| ! | GTTTAGTTCAACTACTGGTG+TGG | - | chr7.3:11655041-11655060 | MS.gene22419:intron | 40.0% |
| !! | GAAGGAGATTTCTGGGTTTT+TGG | - | chr7.3:11655263-11655282 | MS.gene22419:CDS | 40.0% |
| !! | GGATTTTAGGAGAGGTAGTA+AGG | - | chr7.3:11655353-11655372 | MS.gene22419:CDS | 40.0% |
| !! | TTTGATAAGGTGGGCTGTTA+GGG | - | chr7.3:11655110-11655129 | MS.gene22419:intron | 40.0% |
| !!! | GGTTTTGAGAAGGAGATTTC+TGG | - | chr7.3:11655255-11655274 | MS.gene22419:CDS | 40.0% |
| !!! | TGCGGTTGTTTTGATAAGGT+GGG | - | chr7.3:11655101-11655120 | MS.gene22419:intron | 40.0% |
| !!! | TGGTTTTTGGCTCGAATTTG+CGG | - | chr7.3:11655474-11655493 | MS.gene22419:CDS | 40.0% |
| !!! | TTGGGTTACTGGTTTTGAGA+AGG | - | chr7.3:11655245-11655264 | MS.gene22419:CDS | 40.0% |
| !!! | TTTTGATAAGGTGGGCTGTT+AGG | - | chr7.3:11655109-11655128 | MS.gene22419:intron | 40.0% |
| AAACCTCCTACCCTGTTGAT+TGG | + | chr7.3:11655592-11655611 | None:intergenic | 45.0% | |
| AATCAACAGGGTAGGAGGTT+TGG | - | chr7.3:11655591-11655610 | MS.gene22419:CDS | 45.0% | |
| AGAAGAAGAAGAAGAGGGAG+AGG | - | chr7.3:11654783-11654802 | MS.gene22419:CDS | 45.0% | |
| AGAGGGAGAGGAAAAGAAGA+AGG | - | chr7.3:11654795-11654814 | MS.gene22419:CDS | 45.0% | |
| AGTAGGGATGCCAATCAACA+GGG | - | chr7.3:11655579-11655598 | MS.gene22419:CDS | 45.0% | |
| ATCAACAGGGTAGGAGGTTT+GGG | - | chr7.3:11655592-11655611 | MS.gene22419:CDS | 45.0% | |
| CAAGGCGACATAACCGAAAA+TGG | + | chr7.3:11655228-11655247 | None:intergenic | 45.0% | |
| CGTTTCATTTCCTTCGTCGA+CGG | - | chr7.3:11654325-11654344 | MS.gene22419:CDS | 45.0% | |
| GACGAAGGAAATGAAACGTG+AGG | + | chr7.3:11654323-11654342 | None:intergenic | 45.0% | |
| GATGAAGAAAAGGACGACGA+CGG | + | chr7.3:11654471-11654490 | None:intergenic | 45.0% | |
| GATGTTTCAGTCTACCATGG+AGG | - | chr7.3:11655512-11655531 | MS.gene22419:CDS | 45.0% | |
| GTTCAACTACTGGTGTGGTT+TGG | - | chr7.3:11655046-11655065 | MS.gene22419:intron | 45.0% | |
| TCGTTCTGGTATCACGTTGA+AGG | - | chr7.3:11654675-11654694 | MS.gene22419:CDS | 45.0% | |
| TGACACAGCTTGTGGGAATA+TGG | - | chr7.3:11655139-11655158 | MS.gene22419:intron | 45.0% | |
| TGGATCGAATTCCAAAGCTC+CGG | - | chr7.3:11654558-11654577 | MS.gene22419:CDS | 45.0% | |
| TTCTGGTATCACGTTGAAGG+CGG | - | chr7.3:11654678-11654697 | MS.gene22419:CDS | 45.0% | |
| TTTCGCACCGTCGTTGAAAA+CGG | - | chr7.3:11654295-11654314 | MS.gene22419:CDS | 45.0% | |
| TTTGGGCAGAGGGAAATTGA+GGG | - | chr7.3:11655609-11655628 | MS.gene22419:CDS | 45.0% | |
| ! | CATTTTCGGTTATGTCGCCT+TGG | - | chr7.3:11655226-11655245 | MS.gene22419:CDS | 45.0% |
| ! | GAGAAGAGTGATTTGGGGAA+TGG | - | chr7.3:11654817-11654836 | MS.gene22419:intron | 45.0% |
| ! | TGTGGATTTCTGGGTTGCTT+TGG | - | chr7.3:11655329-11655348 | MS.gene22419:CDS | 45.0% |
| ! | TTCTCCGGTGATGATGATGA+TGG | - | chr7.3:11654523-11654542 | MS.gene22419:CDS | 45.0% |
| !! | GGCGGAAGATTCTGAAATTG+AGG | - | chr7.3:11654696-11654715 | MS.gene22419:CDS | 45.0% |
| !!! | CTGCGGTTGTTTTGATAAGG+TGG | - | chr7.3:11655100-11655119 | MS.gene22419:intron | 45.0% |
| !!! | GATGATGGACGGACTCTTTT+TGG | - | chr7.3:11654538-11654557 | MS.gene22419:CDS | 45.0% |
| !!! | GCTTTGGAGGATTTTAGGAG+AGG | - | chr7.3:11655345-11655364 | MS.gene22419:CDS | 45.0% |
| !!! | GGGTTGCTTTGGAGGATTTT+AGG | - | chr7.3:11655340-11655359 | MS.gene22419:CDS | 45.0% |
| !!! | GGTTTTTGGCTCGAATTTGC+GGG | - | chr7.3:11655475-11655494 | MS.gene22419:CDS | 45.0% |
| !!! | TGAGGTACCGTTTTCAACGA+CGG | + | chr7.3:11654305-11654324 | None:intergenic | 45.0% |
| AGCAGCGTTAACAGCGTTAC+CGG | + | chr7.3:11654392-11654411 | None:intergenic | 50.0% | |
| ATGCCAATCAACAGGGTAGG+AGG | - | chr7.3:11655586-11655605 | MS.gene22419:CDS | 50.0% | |
| CCGTCCATCATCATCATCAC+CGG | + | chr7.3:11654530-11654549 | None:intergenic | 50.0% | |
| GAGTAGGGATGCCAATCAAC+AGG | - | chr7.3:11655578-11655597 | MS.gene22419:CDS | 50.0% | |
| GATGCAGTGACACAGCTTGT+GGG | - | chr7.3:11655132-11655151 | MS.gene22419:intron | 50.0% | |
| GCACGTTGTGTAACCGTAGT+TGG | + | chr7.3:11654186-11654205 | None:intergenic | 50.0% | |
| GCTACCATTAACCGGAGCTT+TGG | + | chr7.3:11654572-11654591 | None:intergenic | 50.0% | |
| GTTATGTCGCCTTGGGTTAC+TGG | - | chr7.3:11655234-11655253 | MS.gene22419:CDS | 50.0% | |
| GTTTGGGCAGAGGGAAATTG+AGG | - | chr7.3:11655608-11655627 | MS.gene22419:CDS | 50.0% | |
| TGCTTGGAAGCTGTGCTTTG+TGG | - | chr7.3:11655438-11655457 | MS.gene22419:CDS | 50.0% | |
| ! | ACTACTGGTGTGGTTTGGGA+TGG | - | chr7.3:11655051-11655070 | MS.gene22419:intron | 50.0% |
| ! | GGATTTCTGGGTTGCTTTGG+AGG | - | chr7.3:11655332-11655351 | MS.gene22419:CDS | 50.0% |
| !! | CCGGTGATGATGATGATGGA+CGG | - | chr7.3:11654527-11654546 | MS.gene22419:CDS | 50.0% |
| CGTTAACAGCGTTACCGGCA+AGG | + | chr7.3:11654387-11654406 | None:intergenic | 55.0% | |
| CGTTACCGGCAAGGTCAAGA+CGG | + | chr7.3:11654378-11654397 | None:intergenic | 55.0% | |
| CTTTCCCGTCTTGACCTTGC+CGG | - | chr7.3:11654370-11654389 | MS.gene22419:CDS | 55.0% | |
| GGATGCAGTGACACAGCTTG+TGG | - | chr7.3:11655131-11655150 | MS.gene22419:intron | 55.0% | |
| GGGATGCCAATCAACAGGGT+AGG | - | chr7.3:11655583-11655602 | MS.gene22419:CDS | 55.0% | |
| GTTACCGGCAAGGTCAAGAC+GGG | + | chr7.3:11654377-11654396 | None:intergenic | 55.0% | |
| AGGGTAGGAGGTTTGGGCAG+AGG | - | chr7.3:11655598-11655617 | MS.gene22419:CDS | 60.0% | |
| GGGTAGGAGGTTTGGGCAGA+GGG | - | chr7.3:11655599-11655618 | MS.gene22419:CDS | 60.0% | |
| CGGCGAAGAGCAGCTGGAGA+AGG | + | chr7.3:11654451-11654470 | None:intergenic | 65.0% | |
| CGACGACGGCGAAGAGCAGC+TGG | + | chr7.3:11654457-11654476 | None:intergenic | 70.0% | |
| GGCGGGATCGCCGTCGACGA+AGG | + | chr7.3:11654338-11654357 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 11654175 | 11655653 | 11654175 | ID=MS.gene22419 |
| chr7.3 | mRNA | 11654175 | 11655653 | 11654175 | ID=MS.gene22419.t1;Parent=MS.gene22419 |
| chr7.3 | exon | 11655146 | 11655653 | 11655146 | ID=MS.gene22419.t1.exon1;Parent=MS.gene22419.t1 |
| chr7.3 | CDS | 11655146 | 11655653 | 11655146 | ID=cds.MS.gene22419.t1;Parent=MS.gene22419.t1 |
| chr7.3 | exon | 11654175 | 11654827 | 11654175 | ID=MS.gene22419.t1.exon2;Parent=MS.gene22419.t1 |
| chr7.3 | CDS | 11654175 | 11654827 | 11654175 | ID=cds.MS.gene22419.t1;Parent=MS.gene22419.t1 |
| Gene Sequence |
| Protein sequence |
